BLASTX nr result
ID: Forsythia22_contig00050872
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00050872
(212 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEJ90716.1| RNA polymerase beta' subunit, partial (chloroplas... 41 2e-07
gb|ACB88309.1| RNA polymerase C, partial (chloroplast) [Daucus a... 40 5e-07
gb|ACA10461.1| RNA polymerase C, partial (chloroplast) [Coccineo... 40 7e-07
gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (ch... 40 1e-06
gb|ACN75312.1| RNA polymerase C, partial (chloroplast) [Strychno... 40 1e-06
gb|ADD47816.1| RNA polymerase C [Strychnos nux-vomica] 40 1e-06
gb|AJP31404.1| RNA polymerase C, partial (chloroplast) [Strychno... 40 1e-06
gb|AJP31400.1| RNA polymerase C, partial (chloroplast) [Strychno... 40 1e-06
gb|AJP31398.1| RNA polymerase C, partial (chloroplast) [Strychno... 40 1e-06
gb|ACA10602.1| RNA polymerase C, partial (chloroplast) [Strychno... 40 1e-06
ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasilie... 40 1e-06
ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot escule... 40 1e-06
gb|ADD47821.1| RNA polymerase C [Coptis chinensis] gi|290585154|... 40 1e-06
gb|AGP25518.1| RNA polymerase C, partial (chloroplast) [Coptis c... 40 1e-06
gb|ADD47688.1| RNA polymerase C [Fordia cauliflora] 40 2e-06
gb|AIK21299.1| RNA polymerase beta (chloroplast) [Lathyrus sativus] 40 4e-06
ref|YP_003587773.1| RNA polymerase beta' subunit [Lathyrus sativ... 40 4e-06
gb|AFO83478.1| RNA polymerase beta' subunit, partial (chloroplas... 40 4e-06
gb|AFO83477.1| RNA polymerase beta' subunit, partial (chloroplas... 40 4e-06
gb|AGW98876.1| RNA polymerase beta (chloroplast) [Stictocardia m... 40 5e-06
>gb|AEJ90716.1| RNA polymerase beta' subunit, partial (chloroplast) [Sisyrinchium
chilense]
Length = 169
Score = 40.8 bits (94), Expect(2) = 2e-07
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKIW+KEPIV EIL EVM
Sbjct: 84 IGVAKSKIWEKEPIVWEILQEVM 106
Score = 40.4 bits (93), Expect(2) = 2e-07
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 116 APTLHRLGIQAFQPVLVEGR 135
>gb|ACB88309.1| RNA polymerase C, partial (chloroplast) [Daucus aureus]
Length = 169
Score = 40.4 bits (93), Expect(2) = 5e-07
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 91 APTLHRLGIQAFQPVLVEGR 110
Score = 39.7 bits (91), Expect(2) = 5e-07
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = -1
Query: 209 RQFSLSIIGAYGI-SICQKRVAAMRILGVAKSKIWKKEPIV*EILHEVM 66
R+ ++ + + I S+ ++++A+ +GVAKSKIW+K+PIV EIL EVM
Sbjct: 35 REIAIELFQTFVIRSLIRQQLASN--IGVAKSKIWEKKPIVWEILREVM 81
>gb|ACA10461.1| RNA polymerase C, partial (chloroplast) [Coccineorchis cernua]
Length = 160
Score = 40.0 bits (92), Expect(2) = 7e-07
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 90 APTLHRLGIQAFQPILVEGR 109
Score = 39.7 bits (91), Expect(2) = 7e-07
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -1
Query: 131 GVAKSKIWKKEPIV*EILHEVM 66
G+AKSKIW+KEPIV EIL EVM
Sbjct: 59 GIAKSKIWEKEPIVWEILQEVM 80
>gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Daphniphyllum oldhamii]
Length = 639
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 437 APTLHRLGIQAFQPVLVEGR 456
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 405 IGVAKSKIREKEPIVWEILHEVM 427
>gb|ACN75312.1| RNA polymerase C, partial (chloroplast) [Strychnos erichsonii]
gi|224987381|gb|ACN75440.1| RNA polymerase C, partial
(chloroplast) [Strychnos sp. MAG-2009]
Length = 194
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 118 APTLHRLGIQAFQPVLVEGR 137
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 86 IGVAKSKIREKEPIVWEILHEVM 108
>gb|ADD47816.1| RNA polymerase C [Strychnos nux-vomica]
Length = 180
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 95 APTLHRLGIQAFQPVLVEGR 114
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 63 IGVAKSKIREKEPIVWEILHEVM 85
>gb|AJP31404.1| RNA polymerase C, partial (chloroplast) [Strychnos jobertiana]
Length = 169
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 91 APTLHRLGIQAFQPVLVEGR 110
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 59 IGVAKSKIREKEPIVWEILHEVM 81
>gb|AJP31400.1| RNA polymerase C, partial (chloroplast) [Strychnos cogens]
Length = 168
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 90 APTLHRLGIQAFQPVLVEGR 109
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 58 IGVAKSKIREKEPIVWEILHEVM 80
>gb|AJP31398.1| RNA polymerase C, partial (chloroplast) [Strychnos amazonica]
Length = 168
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 90 APTLHRLGIQAFQPVLVEGR 109
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 58 IGVAKSKIREKEPIVWEILHEVM 80
>gb|ACA10602.1| RNA polymerase C, partial (chloroplast) [Strychnos decussata]
gi|167890750|gb|ACA10603.1| RNA polymerase C, partial
(chloroplast) [Strychnos decussata]
gi|167890752|gb|ACA10604.1| RNA polymerase C, partial
(chloroplast) [Strychnos decussata]
gi|167890754|gb|ACA10605.1| RNA polymerase C, partial
(chloroplast) [Strychnos madagascariensis]
gi|167890756|gb|ACA10606.1| RNA polymerase C, partial
(chloroplast) [Strychnos madagascariensis]
gi|167890758|gb|ACA10607.1| RNA polymerase C, partial
(chloroplast) [Strychnos madagascariensis]
gi|167890760|gb|ACA10608.1| RNA polymerase C, partial
(chloroplast) [Strychnos spinosa]
gi|167890762|gb|ACA10609.1| RNA polymerase C, partial
(chloroplast) [Strychnos spinosa]
gi|167890764|gb|ACA10610.1| RNA polymerase C, partial
(chloroplast) [Strychnos spinosa]
Length = 160
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 90 APTLHRLGIQAFQPVLVEGR 109
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 58 IGVAKSKIREKEPIVWEILHEVM 80
>ref|YP_004327650.1| RNA polymerase beta' subunit [Hevea brasiliensis]
gi|308523495|gb|ADO33545.1| RNA polymerase beta' subunit
[Hevea brasiliensis]
Length = 680
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 455 APTLHRLGIQAFQPILVEGR 474
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 423 IGVAKSKIREKEPIVWEILHEVM 445
>ref|YP_001718428.1| RNA polymerase beta' subunit [Manihot esculenta]
gi|212288297|sp|B1NWE1.1|RPOC1_MANES RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
(chloroplast) [Manihot esculenta]
gi|157695876|gb|ABV66145.1| RNA polymerase beta [Manihot
esculenta]
Length = 680
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 455 APTLHRLGIQAFQPILVEGR 474
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKI +KEPIV EILHEVM
Sbjct: 423 IGVAKSKIREKEPIVWEILHEVM 445
>gb|ADD47821.1| RNA polymerase C [Coptis chinensis] gi|290585154|gb|ADD47822.1| RNA
polymerase C, partial (chloroplast) [Coptis chinensis]
Length = 162
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 87 APTLHRLGIQAFQPILVEGR 106
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKIW+K PIV EIL EVM
Sbjct: 55 IGVAKSKIWEKAPIVWEILQEVM 77
>gb|AGP25518.1| RNA polymerase C, partial (chloroplast) [Coptis chinensis]
Length = 158
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 79 APTLHRLGIQAFQPILVEGR 98
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKSKIW+K PIV EIL EVM
Sbjct: 47 IGVAKSKIWEKAPIVWEILQEVM 69
>gb|ADD47688.1| RNA polymerase C [Fordia cauliflora]
Length = 162
Score = 40.0 bits (92), Expect(2) = 2e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 87 APTLHRLGIQAFQPILVEGR 106
Score = 38.1 bits (87), Expect(2) = 2e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+G+AKSKI +KEPIV EILHEVM
Sbjct: 55 IGIAKSKIREKEPIVWEILHEVM 77
>gb|AIK21299.1| RNA polymerase beta (chloroplast) [Lathyrus sativus]
Length = 689
Score = 40.0 bits (92), Expect(2) = 4e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 458 APTLHRLGIQAFQPILVEGR 477
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKS+I +KEPIV EILHEVM
Sbjct: 426 IGVAKSQIREKEPIVWEILHEVM 448
>ref|YP_003587773.1| RNA polymerase beta' subunit [Lathyrus sativus]
gi|293338662|gb|ADE43634.1| RNA polymerase beta' subunit
(chloroplast) [Lathyrus sativus]
Length = 685
Score = 40.0 bits (92), Expect(2) = 4e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 454 APTLHRLGIQAFQPILVEGR 473
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKS+I +KEPIV EILHEVM
Sbjct: 422 IGVAKSQIREKEPIVWEILHEVM 444
>gb|AFO83478.1| RNA polymerase beta' subunit, partial (chloroplast) [Lathyrus
sativus]
Length = 177
Score = 40.0 bits (92), Expect(2) = 4e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 94 APTLHRLGIQAFQPILVEGR 113
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKS+I +KEPIV EILHEVM
Sbjct: 62 IGVAKSQIREKEPIVWEILHEVM 84
>gb|AFO83477.1| RNA polymerase beta' subunit, partial (chloroplast) [Lathyrus
cicera]
Length = 177
Score = 40.0 bits (92), Expect(2) = 4e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQP+LVEGR
Sbjct: 94 APTLHRLGIQAFQPILVEGR 113
Score = 37.0 bits (84), Expect(2) = 4e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -1
Query: 134 LGVAKSKIWKKEPIV*EILHEVM 66
+GVAKS+I +KEPIV EILHEVM
Sbjct: 62 IGVAKSQIREKEPIVWEILHEVM 84
>gb|AGW98876.1| RNA polymerase beta (chloroplast) [Stictocardia macalusoi]
Length = 687
Score = 40.4 bits (93), Expect(2) = 5e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -2
Query: 61 APTLHRLCIQAFQPVLVEGR 2
APTLHRL IQAFQPVLVEGR
Sbjct: 462 APTLHRLGIQAFQPVLVEGR 481
Score = 36.2 bits (82), Expect(2) = 5e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = -1
Query: 209 RQFSLSIIGAYGISICQKRVAAMRILGVAKSKIWKKEPIV*EILHEVM 66
R+ ++ + + I +R A I GVAKSKI +KEPIV EIL EVM
Sbjct: 406 REIAIELFQTFVIRGLIRRHLASNI-GVAKSKIGEKEPIVWEILQEVM 452