BLASTX nr result
ID: Forsythia22_contig00050640
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00050640
(464 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 159 9e-37
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 147 3e-33
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 146 6e-33
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 145 1e-32
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 145 1e-32
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 145 1e-32
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 145 1e-32
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 144 2e-32
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 143 4e-32
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 143 4e-32
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 142 1e-31
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 140 3e-31
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 140 4e-31
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 139 7e-31
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 137 3e-30
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 137 3e-30
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 136 5e-30
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 135 8e-30
gb|ABA93686.1| retrotransposon protein, putative, Ty1-copia subc... 135 8e-30
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 135 1e-29
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 159 bits (401), Expect = 9e-37
Identities = 71/148 (47%), Positives = 98/148 (66%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVS 180
GT +N +Y G+ + G S++ V T WH RL H+S +GL+ L + V G ++
Sbjct: 362 GTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLT 421
Query: 181 DLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSR 360
DLPFC+HCV GK ++ F+ +H+T+ L+Y+HSDLWGPS P+ G RYFL++IDDYSR
Sbjct: 422 DLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSR 481
Query: 361 KVWVYLLKDKSDTFHNFNNWKRQVENLT 444
KVW+Y LK+KS+TF F WK VE T
Sbjct: 482 KVWIYFLKNKSETFLKFKEWKILVETQT 509
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 147 bits (371), Expect = 3e-33
Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVS 180
G +R+ +YI G G S + K D T WH+RL H+S KG+++L K ++ +
Sbjct: 386 GQKRDTLYILDGVTEEGESHSSAEVK-DETALWHSRLGHMSQKGMEILVKKGCLRREVIK 444
Query: 181 DLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGN-RYFLSIIDDYS 357
+L FC+ CV GK H++SF+ H TK L YVHSDLWG NP S GN +YF+S +DDYS
Sbjct: 445 ELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYS 504
Query: 358 RKVWVYLLKDKSDTFHNFNNWKRQVENLTD 447
RKVW+Y L+ K + F F WK+ VEN +D
Sbjct: 505 RKVWIYFLRKKDEAFEKFVEWKKMVENQSD 534
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 146 bits (368), Expect = 6e-33
Identities = 63/149 (42%), Positives = 92/149 (61%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVS 180
G N +Y+ G + + + ++ D T WH RL H+SIKGL+ L+ + + G D +
Sbjct: 394 GVNENGLYVLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQ 453
Query: 181 DLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSR 360
L FC++C+ GK H+ F+ G H +K++L+Y H D WGP+ P+ G RYF+S+IDDYSR
Sbjct: 454 QLEFCENCIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSR 513
Query: 361 KVWVYLLKDKSDTFHNFNNWKRQVENLTD 447
KVW+Y+LK K F WK VEN +D
Sbjct: 514 KVWIYILKIKDQALEKFKVWKSLVENQSD 542
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 145 bits (366), Expect = 1e-32
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Frame = +1
Query: 19 IYITTGEVIRGLDSSISSTKVDH---THKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
+Y+ G + G DS+ ++ D T+ WH RL H+S G+ L +N+ S +
Sbjct: 399 LYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIK 458
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HC+ GKH ++ F+T VH TK L+YVH+DLWGPS P+ G RY L+IIDDYSRKVW
Sbjct: 459 FCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVW 518
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F NWK +E T+
Sbjct: 519 PYFLKHKDDTFTAFKNWKVMIERQTE 544
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 145 bits (366), Expect = 1e-32
Identities = 68/146 (46%), Positives = 92/146 (63%), Gaps = 3/146 (2%)
Frame = +1
Query: 19 IYITTGEVIRGLDSS---ISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
+Y+ G + G DS+ I++ + T+ WH RL H+S G+ L +N+ S +
Sbjct: 399 LYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIK 458
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HC+ GKH ++ F+T VH TK L+YVH+DLWGPS P+ G RY L+IIDDYSRKVW
Sbjct: 459 FCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVW 518
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F NWK +E T+
Sbjct: 519 PYFLKHKDDTFTAFKNWKVMIERQTE 544
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 145 bits (365), Expect = 1e-32
Identities = 67/146 (45%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Frame = +1
Query: 19 IYITTGEVIRGLDSSISSTKVDH---THKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
+Y+ G + G DS+ ++ D T+ WH RL H+S G+ L +N+ S +
Sbjct: 399 LYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIK 458
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HC+ GKH ++ F+T VH TK L+YVH+DLWGPS P+ G RY L++IDDYSRKVW
Sbjct: 459 FCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVW 518
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F NWK +E T+
Sbjct: 519 PYFLKHKDDTFTAFKNWKVMIERQTE 544
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 145 bits (365), Expect = 1e-32
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Frame = +1
Query: 19 IYITTGEVIRGLDSSISSTKVDH---THKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
+Y+ G + G DS+ ++ D T+ WH RL H+S G+ L +N+ S +
Sbjct: 401 LYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIK 460
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HC+ GKH ++ F+T VH TK L+YVH+DLWGPS P+ G RY L+IIDDYSRKVW
Sbjct: 461 FCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVW 520
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F NWK +E T+
Sbjct: 521 PYFLKHKDDTFTAFKNWKVMIERQTE 546
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103833265 [Brassica rapa]
Length = 3353
Score = 144 bits (364), Expect = 2e-32
Identities = 74/150 (49%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVS 180
G N +Y G V RG +++IS + T WH RL H+S K ++LL + K V
Sbjct: 323 GKYENGLYYLQGTVSRG-EANISESTDSKTKVWHTRLGHMSSKNMELLAKEGFIPKTEVG 381
Query: 181 DLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTS-DGNRYFLSIIDDYS 357
L FC+ CVLGK HKLSF T H TK ILEYVHSDLWG S P S G +YF+S IDD+S
Sbjct: 382 KLEFCEGCVLGKKHKLSFPTAKHTTKGILEYVHSDLWGSPSTPGSLGGCKYFISFIDDFS 441
Query: 358 RKVWVYLLKDKSDTFHNFNNWKRQVENLTD 447
+KVWVY L+ K + F F WK VE+ T+
Sbjct: 442 KKVWVYFLQTKDEAFSKFKEWKEAVESHTE 471
Score = 144 bits (364), Expect = 2e-32
Identities = 74/150 (49%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVS 180
G N +Y G V RG +++IS + T WH RL H+S K ++LL + K V
Sbjct: 2398 GKYENGLYYLQGTVSRG-EANISESTDSKTKVWHTRLGHMSSKNMELLAKEGFIPKTEVG 2456
Query: 181 DLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTS-DGNRYFLSIIDDYS 357
L FC+ CVLGK HKLSF T H TK ILEYVHSDLWG S P S G +YF+S IDD+S
Sbjct: 2457 KLEFCEGCVLGKKHKLSFPTAKHTTKGILEYVHSDLWGSPSTPGSLGGCKYFISFIDDFS 2516
Query: 358 RKVWVYLLKDKSDTFHNFNNWKRQVENLTD 447
+KVWVY L+ K + F F WK VE+ T+
Sbjct: 2517 KKVWVYFLQTKDEAFSKFKEWKEAVESHTE 2546
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 143 bits (361), Expect = 4e-32
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRG--LDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G +++S + T+ WH RL H+S G+ L +N+ ++
Sbjct: 350 NLYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGYTQGNMK 409
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH ++ F+T VH+TK IL+YVH+DLWGPS P+ G RY L+IIDDYS KVW
Sbjct: 410 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSTKVW 469
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F WK +E T+
Sbjct: 470 PYFLKHKDDTFATFKEWKVMIERQTE 495
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 143 bits (361), Expect = 4e-32
Identities = 65/146 (44%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRGLDSS--ISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G ++ +S + T+ WH RL H+S G+ L +N+ ++
Sbjct: 295 NLYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 354
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH ++ F+T VH+TK IL+YVH+DLWGPS P+ G RY L+IIDDYSRKVW
Sbjct: 355 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVW 414
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F WK ++ T+
Sbjct: 415 PYFLKHKDDTFAAFKEWKVMIKRQTE 440
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 142 bits (357), Expect = 1e-31
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRGLDSSISSTKVD--HTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G ++ + TK + T+ WH RL H+S G+ L +N+ ++
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 459
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+ CV GKH ++ F+T VH+TK IL+YVH+DLWGPS P+ G RY L+IIDDYSRKVW
Sbjct: 460 FCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVW 519
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F WK +E T+
Sbjct: 520 PYFLKHKDDTFAAFKEWKVMIERQTE 545
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 140 bits (353), Expect = 3e-31
Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRG--LDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G +++S + T+ WH RL H+S G+ L +N+ ++
Sbjct: 340 NLYVLRGSTLHGSITAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 399
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH ++ F+T VH++K IL+YVH+DLWGPS P+ G Y L+IIDDYSRKVW
Sbjct: 400 FCEHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVW 459
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F WK +E T+
Sbjct: 460 PYFLKHKDDTFAAFKEWKVMIERQTE 485
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 140 bits (352), Expect = 4e-31
Identities = 64/142 (45%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Frame = +1
Query: 16 DIYITTGEVIRG--LDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G +++S + T+ WH RL H+S G+ L +N+ ++
Sbjct: 397 NLYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 456
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH ++ F+T VH+TK IL+YVH+DLWGPS P+ G Y L+IIDDYSRKVW
Sbjct: 457 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVW 516
Query: 370 VYLLKDKSDTFHNFNNWKRQVE 435
Y LK K DTF F WK +E
Sbjct: 517 PYFLKHKDDTFAAFKEWKVMIE 538
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 139 bits (350), Expect = 7e-31
Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRG--LDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G +++S + T+ WH RL H+S G+ L +N+ +
Sbjct: 400 NLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMK 459
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH ++ F+T VH+TK IL+YVH+DLWGPS G RY L+IIDDYSRKVW
Sbjct: 460 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVW 519
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F WK ++E T+
Sbjct: 520 PYFLKHKDDTFAAFKEWKVRIERQTE 545
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 137 bits (345), Expect = 3e-30
Identities = 65/147 (44%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVS 180
G+ N +Y+ G + + + KV T WH+RL H+S+ LK+L K + + ++
Sbjct: 409 GSLSNGLYVLDGSTVMSELCNAETDKVK-TALWHSRLGHMSMNNLKVLAGKGLIDRKEIN 467
Query: 181 DLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWG-PSSNPTSDGNRYFLSIIDDYS 357
+L FC+HCV+GK K+SF+ G H ++ L YVH+DLWG P+ P+ G +YFLSIIDD +
Sbjct: 468 ELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKT 527
Query: 358 RKVWVYLLKDKSDTFHNFNNWKRQVEN 438
RKVW+Y LK K +TF F WK VEN
Sbjct: 528 RKVWLYFLKSKDETFDKFCEWKSLVEN 554
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 137 bits (345), Expect = 3e-30
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRGLDSSISSTKVD--HTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G ++ + TK + T+ WH RL H+S G+ L +N+ ++
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 459
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH ++ F+T VH+TK IL+YVH+DLWGPS P+ G RY L+IIDDYSRK W
Sbjct: 460 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEW 519
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F K +E T+
Sbjct: 520 PYFLKHKDDTFAAFKERKVMIERQTE 545
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 136 bits (343), Expect = 5e-30
Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Frame = +1
Query: 16 DIYITTGEVIRGLDSSISSTKVD--HTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLP 189
++Y+ G + G ++ + TK + T+ WH RL H+S G+ L +N+ ++
Sbjct: 137 NLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMK 196
Query: 190 FCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVW 369
FC+HCV GKH + F+ VH+ K IL+YVH+DLWGPS P+ G RY L+IIDD+SRKVW
Sbjct: 197 FCEHCVFGKHKWVKFNISVHRIKGILDYVHADLWGPSHKPSLGGARYMLTIIDDHSRKVW 256
Query: 370 VYLLKDKSDTFHNFNNWKRQVENLTD 447
Y LK K DTF F WK +E T+
Sbjct: 257 PYFLKHKDDTFAAFKEWKVMIERQTE 282
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 135 bits (341), Expect = 8e-30
Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 3/151 (1%)
Frame = +1
Query: 1 GTRRNDIYITTGEVIRG-LDSSISSTKVDH--THKWHNRLAHVSIKGLKLLNDKNVFGKD 171
G +N++Y G + G + ++ SS+K D WH RL H K L++L + +
Sbjct: 325 GVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGT 384
Query: 172 CVSDLPFCDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDD 351
L FC+HCVLGK ++ F T +H TK IL+YVHSD+WGP+ P+ G YF++ +DD
Sbjct: 385 KACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDD 444
Query: 352 YSRKVWVYLLKDKSDTFHNFNNWKRQVENLT 444
+SR+VWV+ +K+K+D F WK +VEN T
Sbjct: 445 FSRRVWVFTMKNKNDVLEIFLKWKAEVENHT 475
>gb|ABA93686.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 680
Score = 135 bits (341), Expect = 8e-30
Identities = 64/145 (44%), Positives = 92/145 (63%), Gaps = 6/145 (4%)
Frame = +1
Query: 19 IYITTGEVIRGLDSS--ISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDLPF 192
+Y+ G + G S+ +S+ + +T+ WH RL H+S G+ L +N+ ++
Sbjct: 77 LYVLRGSTLHGSVSAAIVSNNEPSNTNLWHMRLGHMSEFGMAKLMKRNLLDGCTQGNMKL 136
Query: 193 CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDYSRKVWV 372
C+HCV GK ++ F+T VH+TK IL+Y+H+DLWGPS P++ RY L+IIDDYSRKVW
Sbjct: 137 CEHCVFGKDKRVKFNTSVHRTKGILDYLHADLWGPSRKPSNGCARYMLTIIDDYSRKVWT 196
Query: 373 YLLKDKSDTFHNFNNW----KRQVE 435
Y LK+K DTF F W KRQ+E
Sbjct: 197 YFLKNKDDTFVAFKEWKVMIKRQIE 221
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttatus]
Length = 598
Score = 135 bits (340), Expect = 1e-29
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Frame = +1
Query: 7 RRNDIYITTGEVIRGLDSSISSTKVDHTHKWHNRLAHVSIKGLKLLNDKNVFGKDCVSDL 186
R ++Y+ + E +S++ + D + WH L H+S K L +L+ FG D VS +
Sbjct: 120 RMGNMYVCSAES----SASMNVVQNDLSELWHKGLGHMSNKWLSILHKNQYFGNDKVSSV 175
Query: 187 PFCDHCVLGKHHKLSF----STGVHKTKRILEYVHSDLWGPSSNPTSDGNRYFLSIIDDY 354
CD C+LGK + F S + + ILEY+H+D+WGP+S PT GNRYFLSIIDDY
Sbjct: 176 TLCDSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDY 235
Query: 355 SRKVWVYLLKDKSDTFHNFNNWKRQVENLT 444
SRKV+V+LLK KSD F F WK +EN T
Sbjct: 236 SRKVFVFLLKQKSDVFDKFKTWKTLIENQT 265