BLASTX nr result
ID: Forsythia22_contig00044114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00044114
(1013 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011085577.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 298 4e-78
emb|CDP02357.1| unnamed protein product [Coffea canephora] 246 1e-62
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 234 1e-58
ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic... 234 1e-58
ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 233 1e-58
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 232 3e-58
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 214 6e-53
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 214 6e-53
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 210 1e-51
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The... 202 3e-49
ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 195 4e-47
ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 195 4e-47
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 195 5e-47
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu... 194 6e-47
ref|XP_012835044.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 193 2e-46
ref|XP_010694421.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 192 4e-46
ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 192 4e-46
ref|XP_009378288.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 191 5e-46
ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 189 2e-45
ref|XP_011010825.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 189 4e-45
>ref|XP_011085577.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Sesamum indicum]
Length = 1032
Score = 298 bits (763), Expect = 4e-78
Identities = 162/268 (60%), Positives = 186/268 (69%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS K P+S KID + P KP V L+ + VM R IVKQ +S+ P KL N +S
Sbjct: 1 MSSSKTPISFGFKIDNSRTPFHKP-VLILNPYRDCRVMWRNIVKQVSSRTPLKLCRNSES 59
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
SRTCSFLG +Q+S FP+KFKFRPLFELNS C+PELG +K+GDF +RDE P
Sbjct: 60 LSRTCSFLGSAQESAFPDKFKFRPLFELNSRPTFCFPELGFQKLGDFSSRDEFSPFPA-- 117
Query: 445 GLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQY 266
R+Q+N GLC KSYASVAEAV VS TD AD ERRQY
Sbjct: 118 --RNQINWNGLCFKSYASVAEAVAVSQTDLVEENSVNVSV-ADEVQELLNEVRKEERRQY 174
Query: 265 STRWRQQRMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYMK 86
TRWRQ+R VRGMG ++Y+ LRRRQ +IETEAW QAAKEY+ELL DMCEQKLAPNLPYMK
Sbjct: 175 WTRWRQRRSVRGMGNERYKALRRRQVKIETEAWGQAAKEYRELLNDMCEQKLAPNLPYMK 234
Query: 85 SLFLGWFEPLRDRIAAEQELIRKGKSKA 2
SLFLGWFEPLR++IA EQE IRKGKSKA
Sbjct: 235 SLFLGWFEPLRNKIAEEQEFIRKGKSKA 262
>emb|CDP02357.1| unnamed protein product [Coffea canephora]
Length = 1040
Score = 246 bits (629), Expect = 1e-62
Identities = 147/274 (53%), Positives = 170/274 (62%), Gaps = 6/274 (2%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDR-PKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSL--- 638
MSS K P+SL+I I R PV KP +F L P S VM + I K +S+
Sbjct: 1 MSSTKSPISLNINIGRLTPNPVYKPRIFLLKPPEISTVMWKNIAKLVSSRTLRTQEFGSI 60
Query: 637 -NPQSFSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMG 461
NP S RT SFLGFSQDS FPEKFKF L + N S + E G RK+G+F TRDE +
Sbjct: 61 FNPHSLPRTYSFLGFSQDSIFPEKFKFSTL-DFNPCSGNGFLEQGFRKVGEFSTRDEFLA 119
Query: 460 RPILSGLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXX 281
RP L+ R+Q++ GL KSYAS+AEA+ VS TD AD
Sbjct: 120 RPSLNFARNQISINGLSQKSYASLAEAIAVSSTDVEEDTSVVA---ADEVHELLSEMKKE 176
Query: 280 ERRQYSTRWRQQ-RMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAP 104
+RRQ S RWR+ R V GMG +KY L+RRQ +IETEAWEQAA EYKELL DMCE KLAP
Sbjct: 177 DRRQMSFRWRKHHRAVYGMGSKKYHALKRRQVKIETEAWEQAANEYKELLNDMCEHKLAP 236
Query: 103 NLPYMKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
NLPYMKSLFLGWFEPL +IA EQEL R KSKA
Sbjct: 237 NLPYMKSLFLGWFEPLCSKIAEEQELCRLRKSKA 270
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 234 bits (596), Expect = 1e-58
Identities = 136/269 (50%), Positives = 176/269 (65%), Gaps = 1/269 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS K P+SL+IK+++ KP ++ NSP+M R I+KQ +S+ P KL + S
Sbjct: 1 MSSTKTPISLTIKLNQF---TDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFS--S 55
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
+RT SFLGF QDS F + KFR L ++ S+ V +G + +G++ DE + RP++
Sbjct: 56 KNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIV----MGFQNLGEYLPGDEFLSRPLI- 110
Query: 445 GLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQY 266
++QVN C KSYASVAEAV VS TD D E++Q+
Sbjct: 111 --KNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSV-----VDEVHELLTELKKEEKKQF 163
Query: 265 STRWRQQRMVR-GMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYM 89
+ R R+QRM+ GMG +KYQ L+RRQ ++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+
Sbjct: 164 AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYV 223
Query: 88 KSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
KSLFLGWFEPLRD+IA EQEL +GKSKA
Sbjct: 224 KSLFLGWFEPLRDKIAEEQELCSQGKSKA 252
>ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Nicotiana sylvestris]
gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName:
Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor [Nicotiana sylvestris]
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 234 bits (596), Expect = 1e-58
Identities = 136/269 (50%), Positives = 176/269 (65%), Gaps = 1/269 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS K P+SL+IK+++ KP ++ NSP+M R I+KQ +S+ P KL + S
Sbjct: 1 MSSTKTPISLTIKLNQF---TDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFS--S 55
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
+RT SFLGF QDS F + KFR L ++ S+ V +G + +G++ DE + RP++
Sbjct: 56 KNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIV----MGFQNLGEYLPGDEFLSRPLI- 110
Query: 445 GLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQY 266
++QVN C KSYASVAEAV VS TD D E++Q+
Sbjct: 111 --KNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSV-----VDEVHELLTELKKEEKKQF 163
Query: 265 STRWRQQRMVR-GMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYM 89
+ R R+QRM+ GMG +KYQ L+RRQ ++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+
Sbjct: 164 AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYV 223
Query: 88 KSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
KSLFLGWFEPLRD+IA EQEL +GKSKA
Sbjct: 224 KSLFLGWFEPLRDKIAEEQELCSQGKSKA 252
>ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Nicotiana tomentosiformis]
Length = 1021
Score = 233 bits (595), Expect = 1e-58
Identities = 138/270 (51%), Positives = 177/270 (65%), Gaps = 2/270 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS K P+SL+IK+++ KP ++ NSP+M R I+KQ +S+ P KL + S
Sbjct: 1 MSSTKTPISLTIKLNQF---TDKPTGLDINRYHNSPIMWRNIIKQLSSRTPQKLLFS--S 55
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
+RT SFLGF QDS F + KFR L ++ S+ V +G + +G++ DE + RP+L
Sbjct: 56 KNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIV----MGFQNLGEYLPGDEFLSRPLL- 110
Query: 445 GLRSQVNTYGLC-PKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQ 269
+SQVN+ C KSYASVAEAV VS TD D E++Q
Sbjct: 111 --KSQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSV-----VDEVQELLTELKKEEKKQ 163
Query: 268 YSTRWRQQRMVR-GMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPY 92
++ R R+QRM+ GMG +KYQ L+RRQ ++ETEAWEQAAKEYKELL DMCEQKLAPNLPY
Sbjct: 164 FAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPY 223
Query: 91 MKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
+KSLFLGWFEPLRD+IA EQEL +GKSKA
Sbjct: 224 VKSLFLGWFEPLRDKIAEEQELCSQGKSKA 253
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
[Nicotiana tabacum] gi|21425665|emb|CAC95020.1|
mitochondrial and chloroplast RNA polymerase [Nicotiana
tabacum]
Length = 1021
Score = 232 bits (592), Expect = 3e-58
Identities = 137/270 (50%), Positives = 177/270 (65%), Gaps = 2/270 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS K P+SL+IK+++ KP ++ NSP+M R I+KQ +S+ P KL + S
Sbjct: 1 MSSTKTPISLTIKLNQF---TDKPTGLDINRYHNSPIMWRNIIKQLSSRTPQKLLFS--S 55
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
+RT SFLGF QDS F + KFR L ++ S+ V +G + +G++ DE + RP+L
Sbjct: 56 KNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIV----MGFQNLGEYLPGDEFLSRPLL- 110
Query: 445 GLRSQVNTYGLC-PKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQ 269
++QVN+ C KSYASVAEAV VS TD D E++Q
Sbjct: 111 --KNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSV-----VDEVQELLTELKKEEKKQ 163
Query: 268 YSTRWRQQRMVR-GMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPY 92
++ R R+QRM+ GMG +KYQ L+RRQ ++ETEAWEQAAKEYKELL DMCEQKLAPNLPY
Sbjct: 164 FAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPY 223
Query: 91 MKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
+KSLFLGWFEPLRD+IA EQEL +GKSKA
Sbjct: 224 VKSLFLGWFEPLRDKIAEEQELCSQGKSKA 253
>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Solanum tuberosum]
Length = 1019
Score = 214 bits (546), Expect = 6e-53
Identities = 130/269 (48%), Positives = 168/269 (62%), Gaps = 1/269 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MS K P+SL+IK ++ P NSP+M R IVKQ +S+ P K+ L S
Sbjct: 1 MSCTKTPISLTIKFNQFTNLETNPY-------QNSPIMWRNIVKQFSSRTPQKILLT--S 51
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
+RT SFLGF QDS F +K R + S SN + E+G + +G+F DE + RP+L
Sbjct: 52 KNRTYSFLGFGQDSVFKDKRILRSFIPV-SCSNSGFLEMGFQNLGEF---DEFLRRPLLC 107
Query: 445 GLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQY 266
++SQV+ +C KSYASVAEAV VS TD E++Q+
Sbjct: 108 AMKSQVSNNDICRKSYASVAEAVAVSSTDAEEDVSV-----VGEVQELLTELKKEEKKQF 162
Query: 265 STRWRQQRMVR-GMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYM 89
+ R R QR++ G+ ++KY L+RRQ +IET+AWE AAKEY+ELL DMCEQKLAPNLPY+
Sbjct: 163 TFRRRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAPNLPYV 222
Query: 88 KSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
KSLFLGWFEPLRD+IA EQEL +GKSKA
Sbjct: 223 KSLFLGWFEPLRDKIAQEQELCIQGKSKA 251
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Vitis vinifera]
gi|731418092|ref|XP_010660553.1| PREDICTED: DNA-directed
RNA polymerase 2, chloroplastic/mitochondrial [Vitis
vinifera] gi|298204431|emb|CBI16911.3| unnamed protein
product [Vitis vinifera]
Length = 1035
Score = 214 bits (546), Expect = 6e-53
Identities = 138/273 (50%), Positives = 168/273 (61%), Gaps = 5/273 (1%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPK---IPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTK-LSL 638
MSS K P+ LS + R I KP F + VM R I K+A + P K + L
Sbjct: 1 MSSGKTPI-LSANLGRDLDLIISFEKPTNFRPNPLKKPTVMWRNIAKRAIPRAPRKCVYL 59
Query: 637 NPQSFSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGR 458
+ Q SR SFLGFSQD FPE KF FE +S S+ + E+G R+IG+ +R++ +GR
Sbjct: 60 DSQPLSRRYSFLGFSQDLIFPEIMKFGT-FEPSSCSSSGFSEMGFRRIGEISSREDAVGR 118
Query: 457 PILSGLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXE 278
P LR+Q+ G CPKSYASVAEAV S TD +D E
Sbjct: 119 PSFGCLRNQMGFSGFCPKSYASVAEAV--SSTDVEEDVSA-----SDEIQELLGEMKKEE 171
Query: 277 RRQYSTRWRQQ-RMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPN 101
+RQ + + R++ +M RGM + +Y LRRRQ +IETEAWE AAKEYKELLMDMCEQKLAPN
Sbjct: 172 KRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPN 231
Query: 100 LPYMKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
LPYMKSLFLGWFEPLRD I EQEL R GK+KA
Sbjct: 232 LPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKA 264
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Solanum lycopersicum]
Length = 1022
Score = 210 bits (534), Expect = 1e-51
Identities = 126/273 (46%), Positives = 167/273 (61%), Gaps = 5/273 (1%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSN----SPVMLRKIVKQATSKNPTKLSL 638
MS K P+SL+I+ D+ DL +N SP+M R IVKQ +++ P K+ L
Sbjct: 1 MSCTKTPISLTIRFDQ-----------FTDLETNPYHISPIMWRNIVKQFSTRTPQKILL 49
Query: 637 NPQSFSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGR 458
S + S+LGF S F +K R + S SN + E+G + +G+F DE + R
Sbjct: 50 T--SKNHAYSYLGFGLHSVFKDKRTLRSFIPV-SCSNSGFLEMGFQNLGEFLPGDEFLRR 106
Query: 457 PILSGLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXE 278
P+L ++SQV+ +C K+YASVAEAV VS TD E
Sbjct: 107 PLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSV-----VGEVQELLTELKKEE 161
Query: 277 RRQYSTRWRQQRMVR-GMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPN 101
++Q++ R R+QRM+ G+ ++KY L RRQ +IET+AWEQAAKEY+ELL DMCEQKLAPN
Sbjct: 162 KKQFTFRRRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPN 221
Query: 100 LPYMKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
LPY+KSLFLGWFEPLRD+IA EQEL +GKSKA
Sbjct: 222 LPYVKSLFLGWFEPLRDKIAQEQELCIQGKSKA 254
>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1100
Score = 202 bits (514), Expect = 3e-49
Identities = 125/273 (45%), Positives = 161/273 (58%), Gaps = 5/273 (1%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPK--IPVGK--PAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSL 638
MS I+ PL S +D+ +P+ P++ + P S VM R I K A S+
Sbjct: 1 MSIIETPLISSNLLDKFDHFVPLDNRNPSILYQNPPKISIVMWRNIAKHAISRRTHSF-- 58
Query: 637 NPQSFSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGR 458
Q F+RT SFLG SQDS F EK KFR L + SN + ++G R+IG+ T E +G+
Sbjct: 59 --QCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSRFLDMGGRRIGEVLTNVEYIGK 116
Query: 457 PILSGLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXE 278
R+++ GLCP+ Y SVAEAV + + + D
Sbjct: 117 QSFGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKELLDEMKKEQ------- 169
Query: 277 RRQYSTRWRQQRMV-RGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPN 101
RR+ R R+ +++ RGMG+ KY+ LRRRQ +IETEAWEQAAKEY+ELLMDMCE KLAPN
Sbjct: 170 RRETGNRRRRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPN 229
Query: 100 LPYMKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
LPY+KSLFLGWFEPLRD I EQEL R GK +A
Sbjct: 230 LPYIKSLFLGWFEPLRDAIIKEQELYRLGKLRA 262
>ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial isoform X2 [Prunus mume]
Length = 862
Score = 195 bits (496), Expect = 4e-47
Identities = 126/270 (46%), Positives = 158/270 (58%), Gaps = 2/270 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS + PLS + I + P +F + S + R KQA S+ + +N QS
Sbjct: 1 MSSSQTPLSPA-NISK-NFTFHSPLIFHKNPSMISTTVWRNFAKQAISRKQ-RFHINSQS 57
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
FSR S L Q+S FP FK FEL+S S++ + E+G R G + ++ M +P
Sbjct: 58 FSRAYSLLRICQESVFPGNFK---PFELSSCSSLRFSEVGFRGKGTISSPEDCMCKPSFW 114
Query: 445 GLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERR-- 272
+R+ + G CPK YASVAEAV S TD D E+R
Sbjct: 115 SVRNPIGFNGFCPKGYASVAEAV--SSTDVEEDVSV-----VDEVQELLQQMSIEEKREA 167
Query: 271 QYSTRWRQQRMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPY 92
QY R RQ R RGMG+ KY +L+RRQ +IETEAWE+AAKEY+EL+MDMCEQKLAPNLPY
Sbjct: 168 QYKQRTRQNR-ARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPY 226
Query: 91 MKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
MKSLFLGWFEPLR+ I EQ+L RKGK KA
Sbjct: 227 MKSLFLGWFEPLRNAIDNEQDLCRKGKKKA 256
>ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial isoform X1 [Prunus mume]
Length = 1024
Score = 195 bits (496), Expect = 4e-47
Identities = 126/270 (46%), Positives = 158/270 (58%), Gaps = 2/270 (0%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS + PLS + I + P +F + S + R KQA S+ + +N QS
Sbjct: 1 MSSSQTPLSPA-NISK-NFTFHSPLIFHKNPSMISTTVWRNFAKQAISRKQ-RFHINSQS 57
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
FSR S L Q+S FP FK FEL+S S++ + E+G R G + ++ M +P
Sbjct: 58 FSRAYSLLRICQESVFPGNFK---PFELSSCSSLRFSEVGFRGKGTISSPEDCMCKPSFW 114
Query: 445 GLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERR-- 272
+R+ + G CPK YASVAEAV S TD D E+R
Sbjct: 115 SVRNPIGFNGFCPKGYASVAEAV--SSTDVEEDVSV-----VDEVQELLQQMSIEEKREA 167
Query: 271 QYSTRWRQQRMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPY 92
QY R RQ R RGMG+ KY +L+RRQ +IETEAWE+AAKEY+EL+MDMCEQKLAPNLPY
Sbjct: 168 QYKQRTRQNR-ARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPY 226
Query: 91 MKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
MKSLFLGWFEPLR+ I EQ+L RKGK KA
Sbjct: 227 MKSLFLGWFEPLRNAIDNEQDLCRKGKKKA 256
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 195 bits (495), Expect = 5e-47
Identities = 119/246 (48%), Positives = 149/246 (60%), Gaps = 2/246 (0%)
Frame = -2
Query: 736 PAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQSFSRTCSFLGFSQDSTFPEKFKFR 557
P +F + S + R KQA S+ + +N QSFSR S LG Q+S FP FK
Sbjct: 22 PLIFHKNPSMISTTVWRNFAKQAISRKQ-RFHINSQSFSRAYSLLGICQESVFPGNFK-- 78
Query: 556 PLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILSGLRSQVNTYGLCPKSYASVAEAV 377
FEL+S S++ + E+G R G + ++ M +P +R+ + G CPK YASVAEAV
Sbjct: 79 -PFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSFWSVRNPIWFNGFCPKGYASVAEAV 137
Query: 376 EVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERR--QYSTRWRQQRMVRGMGKQKYQVL 203
S TD D E+R QY R RQ R RGMG+ KY +L
Sbjct: 138 --SSTDVEEEVSV-----VDEVQELLQQMSIEEKREAQYKQRTRQNR-ARGMGQGKYHML 189
Query: 202 RRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDRIAAEQELI 23
+RRQ +IETEAWE+AAKEY+EL+MDMCEQKLAPNLPYMKSLFLGWFEPLR+ I EQ+L
Sbjct: 190 KRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLC 249
Query: 22 RKGKSK 5
RKGK+K
Sbjct: 250 RKGKNK 255
>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
gi|550340797|gb|ERP62048.1| hypothetical protein
POPTR_0004s11060g [Populus trichocarpa]
Length = 475
Score = 194 bits (494), Expect = 6e-47
Identities = 125/272 (45%), Positives = 152/272 (55%), Gaps = 5/272 (1%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS P + + KID KP++ L S VM R + KQA K P SLN S
Sbjct: 1 MSSANPHIFSTKKIDPLIAFDKKPSILSLINSKPSTVMWRNVAKQAILK-PQSKSLNFPS 59
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
F RT SFLG Q+ F EK KF +N+SS P+L R+IG+ T ++ MG+P
Sbjct: 60 FPRTHSFLGAPQEPIFFEKSKFH---SVNNSS----PQLCFRRIGEISTHEDYMGKPSFG 112
Query: 445 GLRSQVNTYG-----LCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXX 281
LR+ ++ G LCP+ Y SVAEAV + + +
Sbjct: 113 FLRNGDSSNGNLCSGLCPRGYVSVAEAVSSTDVEDNVVVDEELQELLQDTRKEEEKEKDF 172
Query: 280 ERRQYSTRWRQQRMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPN 101
RR R+ RGMG KY+ LRRRQ +IE EAWEQAAKEYKELL DMCE KLAPN
Sbjct: 173 RRR------RRLHANRGMGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPN 226
Query: 100 LPYMKSLFLGWFEPLRDRIAAEQELIRKGKSK 5
LPYMK LFLGWFEPLRD IA EQE IR+GK++
Sbjct: 227 LPYMKGLFLGWFEPLRDAIAKEQESIRRGKTR 258
>ref|XP_012835044.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Erythranthe guttatus]
gi|604335441|gb|EYU39350.1| hypothetical protein
MIMGU_mgv1a000681mg [Erythranthe guttata]
Length = 1021
Score = 193 bits (490), Expect = 2e-46
Identities = 126/276 (45%), Positives = 159/276 (57%), Gaps = 8/276 (2%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
M S K P+S + KI + P P ++S VM + I K+ +SK T L+ P S
Sbjct: 1 MYSSKTPISTTFKIGGSRNPNHNPR----SSSNSSTVMWKSIAKRISSK--TLLNRCPNS 54
Query: 625 FSRTCSFLGFSQDSTFPEKFKFR-PLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPIL 449
FL F+QDS FP+KFK R PLF+ + S + Y T DE M +
Sbjct: 55 RR----FLAFAQDSVFPDKFKLRKPLFDNSRSDSNIYTS----------THDEFM----M 96
Query: 448 SGLRSQVNTYGLCPKSYASVAEAVEVSPT------DXXXXXXXXXXXVADXXXXXXXXXX 287
R+Q+N GL KSYA+VAEAVEV+ + D ++
Sbjct: 97 FSSRNQMNVTGLSFKSYATVAEAVEVAGSHTDFEDDNNSNSNNNNINNSNNVDDEFQELL 156
Query: 286 XXERRQYSTRWRQQRMV-RGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKL 110
R++ +WRQ R +GMG +K++ LRRRQ +IETEAWEQAAKEY+ELL DMCEQKL
Sbjct: 157 NEVRKEEKRQWRQNRRSGKGMGNEKFKALRRRQVKIETEAWEQAAKEYRELLNDMCEQKL 216
Query: 109 APNLPYMKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
APNLPYMKSLFLGWFEPLR++I EQE IRKGKSKA
Sbjct: 217 APNLPYMKSLFLGWFEPLRNKIEEEQEFIRKGKSKA 252
>ref|XP_010694421.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Beta vulgaris subsp.
vulgaris] gi|870867851|gb|KMT18720.1| hypothetical
protein BVRB_2g028430 [Beta vulgaris subsp. vulgaris]
Length = 1036
Score = 192 bits (487), Expect = 4e-46
Identities = 120/263 (45%), Positives = 149/263 (56%), Gaps = 1/263 (0%)
Frame = -2
Query: 787 PLSLSIKIDRPKIPVGKP-AVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQSFSRTC 611
P +LS K D P I + K + F ++ NS VM KQA S+ P +L S SR
Sbjct: 10 PANLSQKFD-PSIQIHKSRSNFVINPFFNSTVMWENFAKQAISRTP-RLCFKSFSLSRNY 67
Query: 610 SFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILSGLRSQ 431
SFLG S DS EK KFRP FEL NV +PELG + G ++E+ RPI L +Q
Sbjct: 68 SFLGVSCDSVIAEKLKFRP-FELGFCKNVNFPELGFCRKGGPLVKEEMGERPIFGCLSNQ 126
Query: 430 VNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQYSTRWR 251
N LCPK YASV EA V+ +D R R R
Sbjct: 127 PNLKVLCPKGYASVVEAELVTSSDYEDDVSVFDEIQELVEEMRKVEKRAKWR---DIRQR 183
Query: 250 QQRMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYMKSLFLG 71
+ +MV G+ +YQ+LR RQ ++ETE+W+QAA EY+ELL DMC+ LAPNL Y+KSLFLG
Sbjct: 184 KPKMVAGLPSYRYQMLRNRQIKLETESWQQAANEYRELLADMCKHNLAPNLSYVKSLFLG 243
Query: 70 WFEPLRDRIAAEQELIRKGKSKA 2
WFEPLRD I EQELIR+GK +A
Sbjct: 244 WFEPLRDSIMEEQELIRQGKFRA 266
>ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Pyrus x
bretschneideri]
Length = 1024
Score = 192 bits (487), Expect = 4e-46
Identities = 119/247 (48%), Positives = 146/247 (59%), Gaps = 2/247 (0%)
Frame = -2
Query: 736 PAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQSFSRTCSFLGFSQDSTFPEKFKFR 557
P VF S + R + KQA S N + L+ QS SR S L FS++S F EKFK
Sbjct: 22 PIVFHKSPSMISTSLWRNLAKQAISGNQ-RCRLSSQSISRAYSLLRFSRESVFSEKFK-- 78
Query: 556 PLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILSGLRSQVNTYGLCPKSYASVAEAV 377
FE S +PE+G G+ + + MG P L +R+ + G CPK YAS+AEAV
Sbjct: 79 -PFETGSCLKG-FPEVGFCGKGEISSGESYMGNPSLGSVRNPIGFNGFCPKGYASIAEAV 136
Query: 376 EVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQYSTRWRQ--QRMVRGMGKQKYQVL 203
S TD D +RQ + WR+ QR VRGMG+ KY L
Sbjct: 137 --SSTDAEEDVSV-----VDEVQELLQQMSKEGKRQ-TDHWRRMRQRRVRGMGQAKYLAL 188
Query: 202 RRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDRIAAEQELI 23
+RRQ +IETEAWE+AAKEY+EL+MDMCE KLAPNLPYMKSLFLGWFEPLR+ I EQ+L
Sbjct: 189 KRRQIKIETEAWERAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPLRNAIEHEQDLC 248
Query: 22 RKGKSKA 2
RKGK+KA
Sbjct: 249 RKGKNKA 255
>ref|XP_009378288.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Pyrus x bretschneideri]
Length = 1025
Score = 191 bits (486), Expect = 5e-46
Identities = 112/231 (48%), Positives = 142/231 (61%), Gaps = 2/231 (0%)
Frame = -2
Query: 688 RKIVKQATSKNPTKLSLNPQSFSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPEL 509
R + KQA +N + LN QS SR S LGFS++S P+ FK F+L S SN+ +PE+
Sbjct: 38 RNLAKQAIPRNQ-RGRLNSQSISRAYSLLGFSRESVSPQSFK---PFQLGSYSNMGFPEV 93
Query: 508 GLRKIGDFFTRDEVMGRPILSGLRSQVNTYGLCPKSYASVAEAVEVSPTDXXXXXXXXXX 329
G G+ T + MG P +R+ + G P+ YASVAE V S TD
Sbjct: 94 GFPGKGEISTGESYMGNPSYWSVRTPIGFNGFFPRGYASVAEVV--SSTDAEEDVSL--- 148
Query: 328 XVADXXXXXXXXXXXXERRQYSTRWRQQRM--VRGMGKQKYQVLRRRQARIETEAWEQAA 155
D +RQ + WR+ R+ VRGMG+ KY L+RRQ +IETEAWE+AA
Sbjct: 149 --VDEVQELLQQMSKEGKRQ-TDHWRRMRLRRVRGMGQAKYFALKRRQIKIETEAWERAA 205
Query: 154 KEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDRIAAEQELIRKGKSKA 2
KEY+EL+MDMCE KLAPNLPYMKSLFLGWFEP+R+ I EQ+L RKGK+KA
Sbjct: 206 KEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPMRNAIEKEQDLCRKGKNKA 256
>ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Malus domestica]
Length = 1025
Score = 189 bits (481), Expect = 2e-45
Identities = 116/253 (45%), Positives = 149/253 (58%), Gaps = 2/253 (0%)
Frame = -2
Query: 754 KIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQSFSRTCSFLGFSQDSTFP 575
+IP+G F + S + R + KQA +N + LN QS SR S L FS +S P
Sbjct: 20 RIPIG----FHKNPSMISTSLWRNLAKQAIPRNQ-RGRLNSQSISRAYSLLCFSXESVSP 74
Query: 574 EKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILSGLRSQVNTYGLCPKSYA 395
+ FK F+L S SN+ +PE+G G+ T + +G P +R+ + G C K YA
Sbjct: 75 QXFK---PFQLGSYSNMGFPEVGFPGKGEISTSESYLGNPSYWSVRTPIGFNGFCAKGYA 131
Query: 394 SVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXXERRQYSTRWRQQRM--VRGMGK 221
SVAE V S TD D +RQ + WR+ R+ VRGMG+
Sbjct: 132 SVAEVV--SSTDAEEDVSL-----VDEVQELLQQMSKEGKRQ-TDHWRRMRLRRVRGMGQ 183
Query: 220 QKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDRIA 41
KY L+RRQ +IETEAWE+AAKEY+EL+MDMCE KLAPNLPYMKSLFLGWFEP+R+ I
Sbjct: 184 AKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPMRNAIE 243
Query: 40 AEQELIRKGKSKA 2
EQ+L RKGK+KA
Sbjct: 244 KEQDLCRKGKNKA 256
>ref|XP_011010825.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like isoform X2 [Populus
euphratica]
Length = 1030
Score = 189 bits (479), Expect = 4e-45
Identities = 122/272 (44%), Positives = 150/272 (55%), Gaps = 5/272 (1%)
Frame = -2
Query: 805 MSSIKPPLSLSIKIDRPKIPVGKPAVFCLDLPSNSPVMLRKIVKQATSKNPTKLSLNPQS 626
MSS P + + KID K ++ L S VM R + KQA K P SL+ S
Sbjct: 1 MSSANPHIFSTKKIDPLIAFDKKTSILSLISSKPSTVMWRNVAKQAILK-PQSKSLSFPS 59
Query: 625 FSRTCSFLGFSQDSTFPEKFKFRPLFELNSSSNVCYPELGLRKIGDFFTRDEVMGRPILS 446
F RT SFLG Q+ F EK KF +N+SS P+LG R+I + T ++ MG+P
Sbjct: 60 FPRTHSFLGAPQEPIFFEKSKFH---SVNNSS----PQLGFRRISEISTYEDYMGKPSFG 112
Query: 445 GLRSQVNTYG-----LCPKSYASVAEAVEVSPTDXXXXXXXXXXXVADXXXXXXXXXXXX 281
LR+ ++ G CP+ Y SVAEAV + + +
Sbjct: 113 FLRNGDSSNGNLCSGFCPRGYVSVAEAVSSTDVEDNVVVDEELQELLQETRKEEEKEKDF 172
Query: 280 ERRQYSTRWRQQRMVRGMGKQKYQVLRRRQARIETEAWEQAAKEYKELLMDMCEQKLAPN 101
RR R+ RGMG KY+ LRRRQ +IE EAWEQAAKEYKELL DMCE KLAPN
Sbjct: 173 RRR------RRLHSNRGMGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPN 226
Query: 100 LPYMKSLFLGWFEPLRDRIAAEQELIRKGKSK 5
LPYMK LFLGWFEPLRD IA EQE IR+GK++
Sbjct: 227 LPYMKGLFLGWFEPLRDAIAKEQESIRRGKTR 258