BLASTX nr result
ID: Forsythia22_contig00041935
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00041935
(538 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 59 4e-13
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 62 4e-13
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 57 6e-13
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 58 7e-13
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 54 2e-12
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 59 3e-12
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 54 3e-12
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 60 4e-12
gb|AGH20681.1| reverse transcriptase, partial [Raphanus sativus] 60 4e-12
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 56 5e-12
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] 57 5e-12
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 60 6e-12
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 63 7e-12
gb|AGH20672.1| reverse transcriptase, partial [Thlaspi arvense] 60 7e-12
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 56 8e-12
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 56 8e-12
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 56 8e-12
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 58 9e-12
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus] 60 9e-12
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 57 1e-11
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 58.9 bits (141), Expect(2) = 4e-13
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGEP 190
+ A S +S W AM E+ S N TW L + + + ++ KR + S GE
Sbjct: 907 YKEAVSSNESAKWLVAMSEEMESLHKNQTWELVR-IPQGRKVVGCKWVFKRKEGTSEGES 965
Query: 189 LRFKARLVAKEFIQREGIDYNKIFS 115
+R+KARLVAK F QREG+DYN+IFS
Sbjct: 966 VRYKARLVAKGFSQREGVDYNEIFS 990
Score = 42.0 bits (97), Expect(2) = 4e-13
Identities = 18/39 (46%), Positives = 30/39 (76%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +V++T+IR++L++VAH + + Q+D K LHGEL+E
Sbjct: 990 SPVVRHTSIRVLLAMVAHFDLELEQLDVKTAFLHGELEE 1028
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 62.4 bits (150), Expect(2) = 4e-13
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGEP 190
++ A S E W SAMQE+ S NGTW L L + +I KR + LS EP
Sbjct: 809 YTEAVVSGDREKWISAMQEEMQSLEKNGTWELVH-LPKQKKPVRCKWIFKRKEGLSPSEP 867
Query: 189 LRFKARLVAKEFIQREGIDYNKIFS 115
RFKARLVAK F Q G+DYN +FS
Sbjct: 868 PRFKARLVAKGFSQIVGVDYNDVFS 892
Score = 38.5 bits (88), Expect(2) = 4e-13
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR S+VA H+ + Q+D K LHGEL+E
Sbjct: 892 SPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEE 930
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 57.4 bits (137), Expect(2) = 6e-13
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -2
Query: 348 SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTG-EPLRFKAR 172
S +++ W A+QE+ S N TW L K + S ++ KR + + G E R+KAR
Sbjct: 780 SNEADQWVKAIQEEMDSLRKNETWELVTKPKDRK-VVGSKWVFKRKQGTLGNEAPRYKAR 838
Query: 171 LVAKEFIQREGIDYNKIFS 115
LVAK F Q+EG+DYN+IFS
Sbjct: 839 LVAKGFSQKEGVDYNEIFS 857
Score = 42.7 bits (99), Expect(2) = 6e-13
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR++L+ VAH + + Q+D K LHGELDE
Sbjct: 857 SPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDE 895
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 57.8 bits (138), Expect(3) = 7e-13
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -2
Query: 369 DFSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGE 193
+FS A S+ + W AMQ++ S N TW L + I +I KR + + E
Sbjct: 816 NFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKR-LINCKWIFKRNEGIPDVE 874
Query: 192 PLRFKARLVAKEFIQREGIDYNKIFS 115
P ++KARLVA+ F QREG+D+N+IFS
Sbjct: 875 PPKYKARLVARGFTQREGVDFNEIFS 900
Score = 34.7 bits (78), Expect(3) = 7e-13
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IRI+L++VA + + Q+D K LHG L+E
Sbjct: 900 SPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEE 938
Score = 26.9 bits (58), Expect(3) = 7e-13
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 515 ISVLPNMLLDF*QLSRDRTKREV*ESTR--YTDYVSLVFMS*QDQIHQEP 372
+S LP L QL+RDR +REV R Y D ++ + + +EP
Sbjct: 765 VSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEP 814
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 54.3 bits (129), Expect(2) = 2e-12
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = -2
Query: 348 SLQSESWNSAMQEKTTSSANNGTWVLA-QDLKTSL*QIASVYISKRGKLSTGEPLRFKAR 172
S SE W +AM ++ S N TW L Q + V+ K G +S E +++KAR
Sbjct: 800 SSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEG-ISPAEGVKYKAR 858
Query: 171 LVAKEFIQREGIDYNKIFS 115
+VA+ F QREG+DYN+IFS
Sbjct: 859 VVARGFNQREGVDYNEIFS 877
Score = 44.3 bits (103), Expect(2) = 2e-12
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +V++T+IR++L++VAH N + Q+D K LHGEL+E
Sbjct: 877 SPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEE 915
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 58.5 bits (140), Expect(2) = 3e-12
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 336 ESWNSAMQEKTTSSANNGTW-VLAQDLKTSL*QIASVYISKRGKLSTGEPLRFKARLVAK 160
E WN+AM+E+ S + N TW ++ + K L V+ K G P RF ARLVAK
Sbjct: 829 EKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAP-RFIARLVAK 887
Query: 159 EFIQREGIDYNKIFS 115
F Q+EG+DYN+IFS
Sbjct: 888 GFTQKEGVDYNEIFS 902
Score = 39.3 bits (90), Expect(2) = 3e-12
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+ +IR +LS+V H+N + Q+D K LHG L+E
Sbjct: 902 SPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEE 940
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 53.5 bits (127), Expect(3) = 3e-12
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTG-EP 190
+ AT + + W A E+ S NGTWVL D + I ++ K S G EP
Sbjct: 849 YQEATSDKEWKKWKLATHEEMDSLIKNGTWVLV-DKPQNRKIIGCRWLFKLKSGSPGVEP 907
Query: 189 LRFKARLVAKEFIQREGIDYNKIFS 115
+R+KA+LVAK + REG+DY +IF+
Sbjct: 908 VRYKAQLVAKGYTHREGVDYQEIFA 932
Score = 40.0 bits (92), Expect(3) = 3e-12
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+L+VK+T+IRI++S+V + + Q+D K LHGEL+E
Sbjct: 932 ALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEE 970
Score = 23.5 bits (49), Expect(3) = 3e-12
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 479 QLSRDRTKREV*ESTRYTDYVSLVF 405
QL+RDR +R++ R+T+ + F
Sbjct: 809 QLARDRERRQIHPPARFTEESGVAF 833
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 59.7 bits (143), Expect(2) = 4e-12
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = -2
Query: 348 SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPLRFKARL 169
+++ ++W +AM E+ S N TW L L I ++ K K S GE R+KARL
Sbjct: 844 AIEKKTWRNAMDEEIKSIQKNDTWELTS-LPNGHKTIGVKWVYKAKKNSKGEVERYKARL 902
Query: 168 VAKEFIQREGIDYNKIFS 115
VAK +IQR GIDY+++F+
Sbjct: 903 VAKGYIQRAGIDYDEVFA 920
Score = 37.7 bits (86), Expect(2) = 4e-12
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+ + T+R+I+SL A + WK Q+D K L+G+L+E
Sbjct: 922 VARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEE 958
>gb|AGH20681.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 60.1 bits (144), Expect(2) = 4e-12
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = -2
Query: 342 QSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPLRFKARLVA 163
+ +SW SAM E+ S N TW LA L I ++ K K S GE R+KARLVA
Sbjct: 7 EKKSWRSAMDEEIKSIQKNDTWELAS-LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVA 65
Query: 162 KEFIQREGIDYNKIFS 115
K + QR GIDY+++F+
Sbjct: 66 KGYSQRAGIDYDEVFA 81
Score = 37.4 bits (85), Expect(2) = 4e-12
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+ + T+R+I+SL A +WK Q+D K L+G+L+E
Sbjct: 83 VARLETVRLIISLAAQKSWKIHQMDVKSAFLNGDLEE 119
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 55.8 bits (133), Expect(3) = 5e-12
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLA---QDLKTSL*QIASVYISKRGKLSTG 196
+ AT + + W A E+ S NGTWVL QD K I ++ K G
Sbjct: 73 YQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQDRKI----IGCRWLFKMKSGIPG 128
Query: 195 -EPLRFKARLVAKEFIQREGIDYNKIFS 115
EP+R+KARLVAK + QREG+DY +IF+
Sbjct: 129 VEPVRYKARLVAKGYTQREGVDYQEIFA 156
Score = 37.0 bits (84), Expect(3) = 5e-12
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+VK+T IRI++S+V + + Q+D K LHGEL+E
Sbjct: 158 VVKHTFIRILMSVVVDQDLELEQMDVKTAFLHGELEE 194
Score = 23.9 bits (50), Expect(3) = 5e-12
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 491 LDF*QLSRDRTKREV*ESTRYTDYVSLVF 405
L + QL++DR +RE+ R+T+ + F
Sbjct: 29 LAYYQLAKDRERREIHPPARFTEESGVAF 57
>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
Length = 494
Score = 56.6 bits (135), Expect(3) = 5e-12
Identities = 31/84 (36%), Positives = 44/84 (52%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPL 187
+ AT + + + W A E+ S NGTWVL K + + EP+
Sbjct: 74 YQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPV 133
Query: 186 RFKARLVAKEFIQREGIDYNKIFS 115
R+KARLVAK + QREG+DY +IF+
Sbjct: 134 RYKARLVAKGYTQREGVDYQEIFA 157
Score = 36.6 bits (83), Expect(3) = 5e-12
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+ K+T+IRI++S+V + + Q+D K LHGEL+E
Sbjct: 159 VAKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEE 195
Score = 23.5 bits (49), Expect(3) = 5e-12
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 479 QLSRDRTKREV*ESTRYTDYVSLVF 405
QL+RDR +R++ R+T+ + F
Sbjct: 34 QLARDRERRQIHPPARFTEESGVAF 58
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 59.7 bits (143), Expect(2) = 6e-12
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGEP 190
++ A S E W SA+QE+ S NGTW L L + +I KR + LS EP
Sbjct: 809 YTEAVVSGDREKWISAIQEEMQSLEKNGTWELVH-LPKQKKPVRCKWIFKRKEGLSPSEP 867
Query: 189 LRFKARLVAKEFIQREGIDYNKIFS 115
RFK RLVAK F Q G+DYN +FS
Sbjct: 868 PRFKVRLVAKGFSQIAGVDYNDVFS 892
Score = 37.0 bits (84), Expect(2) = 6e-12
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR S+V H+ + Q+D K LHGEL+E
Sbjct: 892 SPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEE 930
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 62.8 bits (151), Expect(2) = 7e-12
Identities = 37/84 (44%), Positives = 45/84 (53%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPL 187
++ A S E+W SAMQE+ S NGTW L K ++ LS EP
Sbjct: 142 YTEAVVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIFKRKEGLSPSEPP 201
Query: 186 RFKARLVAKEFIQREGIDYNKIFS 115
RFKARLVAK F Q G+DYN +FS
Sbjct: 202 RFKARLVAKGFSQIAGVDYNDVFS 225
Score = 33.9 bits (76), Expect(2) = 7e-12
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR S+VA + + Q+D K LHGEL++
Sbjct: 225 SPVVKHSSIRTFFSIVAMDDLELKQLDVKTTFLHGELED 263
>gb|AGH20672.1| reverse transcriptase, partial [Thlaspi arvense]
Length = 315
Score = 60.1 bits (144), Expect(2) = 7e-12
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = -2
Query: 348 SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPLRFKARL 169
+++ ++W +AM E+ S N TW LA L I ++ K K S GE R+KARL
Sbjct: 5 AMEKKTWRNAMDEEIKSIQKNETWELAS-LPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63
Query: 168 VAKEFIQREGIDYNKIFS 115
VAK++ QR GIDY+++F+
Sbjct: 64 VAKDYSQRAGIDYDEVFA 81
Score = 36.6 bits (83), Expect(2) = 7e-12
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+ + T+R+I+SL A + W+ Q+D K L+G+L+E
Sbjct: 83 VARLETVRLIISLAAQNRWRIHQMDVKSAFLNGDLEE 119
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 55.8 bits (133), Expect(2) = 8e-12
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = -2
Query: 339 SESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGEPLRFKARLVA 163
SE+W SAM E+ S N TW + L I+ +I KR + LS+ EP ++KARLVA
Sbjct: 829 SENWISAMHEEMQSLEKNSTWEVVP-LPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 162 KEFIQREGIDYNKIFS 115
+ + Q G+DYN +FS
Sbjct: 888 RGYSQIPGVDYNDVFS 903
Score = 40.4 bits (93), Expect(2) = 8e-12
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR LS+VA H+ + Q+D K LHGEL+E
Sbjct: 903 SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 55.8 bits (133), Expect(2) = 8e-12
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = -2
Query: 339 SESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGEPLRFKARLVA 163
SE+W SAM E+ S N TW + L I+ +I KR + LS+ EP ++KARLVA
Sbjct: 829 SENWISAMHEEMQSLEKNSTWEVVP-LPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 162 KEFIQREGIDYNKIFS 115
+ + Q G+DYN +FS
Sbjct: 888 RGYSQIPGVDYNDVFS 903
Score = 40.4 bits (93), Expect(2) = 8e-12
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR LS+VA H+ + Q+D K LHGEL+E
Sbjct: 903 SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 55.8 bits (133), Expect(2) = 8e-12
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = -2
Query: 339 SESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGK-LSTGEPLRFKARLVA 163
SE+W SAM E+ S N TW + L I+ +I KR + LS+ EP ++KARLVA
Sbjct: 829 SENWISAMHEEMQSLEKNSTWEVVP-LPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 162 KEFIQREGIDYNKIFS 115
+ + Q G+DYN +FS
Sbjct: 888 RGYSQIPGVDYNDVFS 903
Score = 40.4 bits (93), Expect(2) = 8e-12
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+++IR LS+VA H+ + Q+D K LHGEL+E
Sbjct: 903 SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEE 941
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 57.8 bits (138), Expect(2) = 9e-12
Identities = 33/75 (44%), Positives = 41/75 (54%)
Frame = -2
Query: 339 SESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPLRFKARLVAK 160
S W +AMQE+ S NGTW L K K+ + EP RFKA LVAK
Sbjct: 470 SPKWMTAMQEEFESLLKNGTWQLVDKPKGCKVVGCKWVFKKKLGIPHVEPERFKATLVAK 529
Query: 159 EFIQREGIDYNKIFS 115
+ QREG+D+N+IFS
Sbjct: 530 AYTQREGMDFNEIFS 544
Score = 38.5 bits (88), Expect(2) = 9e-12
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = -3
Query: 119 SLIVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
S +VK+T+IR++L+LV+ N + Q+D + LHGEL+E
Sbjct: 544 SPMVKHTSIRVLLALVSLWNLELXQMDVNRAFLHGELEE 582
>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 60.1 bits (144), Expect(2) = 9e-12
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = -2
Query: 342 QSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPLRFKARLVA 163
+ +SW SAM E+ S N TW LA L I ++ K K S GE R+KARLVA
Sbjct: 7 EKKSWRSAMDEEIKSIQKNDTWELAS-LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVA 65
Query: 162 KEFIQREGIDYNKIFS 115
K + QR GIDY+++F+
Sbjct: 66 KGYSQRAGIDYDEVFA 81
Score = 36.2 bits (82), Expect(2) = 9e-12
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+ + T+R+I+SL A +W+ Q+D K L+G+L+E
Sbjct: 83 VARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEE 119
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 56.6 bits (135), Expect(3) = 1e-11
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = -2
Query: 366 FSVAT*SLQSESWNSAMQEKTTSSANNGTWVLAQDLKTSL*QIASVYISKRGKLSTGEPL 187
+ AT + + W A E+ S NGTWVL K + + EP+
Sbjct: 749 YQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPV 808
Query: 186 RFKARLVAKEFIQREGIDYNKIFS 115
R+KARLVAK + QREG+DY +IF+
Sbjct: 809 RYKARLVAKGYTQREGVDYQEIFA 832
Score = 36.6 bits (83), Expect(3) = 1e-11
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = -3
Query: 113 IVKYTTIRIILSLVAHHNWKAGQIDFKKKKLHGELDE 3
+ K+T+IRI++S+V + + Q+D K LHGEL+E
Sbjct: 834 VAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEE 870
Score = 22.3 bits (46), Expect(3) = 1e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 479 QLSRDRTKREV*ESTRYTDYVSLVF 405
QL RDR +R++ R+T+ + F
Sbjct: 709 QLVRDRERRQIHPPARFTEESGVAF 733