BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00040117
         (409 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]...    49   3e-06

>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
           gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
           [Ajuga reptans]
          Length = 337

 Score = 48.9 bits (115), Expect(2) = 3e-06
 Identities = 28/50 (56%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = -2

Query: 168 NTGSLSPITFHDKLDELGKKKKH*--NRFFY*---LSPSVYNCLKRSNIY 34
           +T  LSP TFHDK D++ K KK       F     LSP VYNCLKRSNIY
Sbjct: 244 HTAPLSPFTFHDKFDKVRKNKKKIALQSIFIDQSELSPKVYNCLKRSNIY 293



 Score = 28.5 bits (62), Expect(2) = 3e-06
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -1

Query: 205 YKEGEILPLEDNQH 164
           YKE E LPLEDNQH
Sbjct: 231 YKEEENLPLEDNQH 244