BLASTX nr result
ID: Forsythia22_contig00039944
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00039944
(522 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v... 179 6e-43
gb|AKB94071.1| ORF V protein [Strawberry vein banding virus] 177 2e-42
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus] 177 2e-42
gb|AAA21736.1| reverse transcriptase [Cauliflower mosaic virus] 169 9e-40
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57... 168 1e-39
gb|ABX80508.1| RdRp [Dahlia mosaic virus] 167 2e-39
gb|ABX80507.1| RdRp [Dahlia mosaic virus] 167 2e-39
gb|ABX80505.1| RdRp [Dahlia mosaic virus] 167 2e-39
gb|ABX80504.1| RdRp [Carnation etched ring virus] 167 2e-39
gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus] 167 2e-39
gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland] 167 2e-39
gb|AHA91342.1| reverse transcriptase [Cauliflower mosaic virus] ... 167 3e-39
gb|AHA91338.1| reverse transcriptase [Cauliflower mosaic virus] 167 3e-39
gb|AHA91331.1| reverse transcriptase [Cauliflower mosaic virus] 167 3e-39
gb|AHA91317.1| reverse transcriptase [Cauliflower mosaic virus] 167 3e-39
gb|ABX80506.1| RdRp [Dahlia mosaic virus] 167 3e-39
gb|ABX80502.1| RdRp [Cauliflower mosaic virus] 167 3e-39
gb|ABX80501.1| RdRp [Cauliflower mosaic virus] 167 3e-39
dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus] 167 3e-39
dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus] 167 3e-39
>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein
banding virus]
Length = 708
Score = 179 bits (454), Expect = 6e-43
Identities = 94/158 (59%), Positives = 111/158 (70%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLD RINKGKF A+I + D NKII+ K M YSP+DREEF QI+ELL L +I PSKSP
Sbjct: 256 PLDSRINKGKFEAQIALLDT--NKIIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSP 313
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SSPAFMV RMVI+Y LN +TK DGY+ PN + LLQ I GK +SSFD
Sbjct: 314 HSSPAFMVRNHAEIKRGKARMVINYKKLNDHTKGDGYLLPNKEQLLQRIGGKTFYSSFDC 373
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +VR ET LTAFSCPQ +++W V+PFGL+QA
Sbjct: 374 KSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQA 411
>gb|AKB94071.1| ORF V protein [Strawberry vein banding virus]
Length = 704
Score = 177 bits (449), Expect = 2e-42
Identities = 98/177 (55%), Positives = 117/177 (66%), Gaps = 4/177 (2%)
Frame = -2
Query: 521 IYSNLTASAFILDII----PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEF 354
+ S T +LD I PLD RINKGKF A+I + D NK+I+ K M YSP+DREEF
Sbjct: 233 VISAFTEVEKLLDSICSEHPLDERINKGKFEAQITLLDP--NKVIKCKPMQYSPQDREEF 290
Query: 353 SIQIKELLDLKVIEPSKSPFSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPN 174
QI+ELL L +I PSKSP SSPAFMV RMVI+Y LN TK DGY+ PN
Sbjct: 291 KTQIEELLKLGIIRPSKSPHSSPAFMVRNHAEIKRGKARMVINYKKLNDNTKGDGYLLPN 350
Query: 173 MQSLLQLIKGKRIFSSFDLKSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
+ LLQ I GK +SSFD KSGF +VR ET LTAFSCPQ +++W V+PFGL+QA
Sbjct: 351 KEQLLQRIGGKTYYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQA 407
>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
Length = 699
Score = 177 bits (449), Expect = 2e-42
Identities = 98/177 (55%), Positives = 117/177 (66%), Gaps = 4/177 (2%)
Frame = -2
Query: 521 IYSNLTASAFILDII----PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEF 354
+ S T +LD I PLD RINKGKF A+I + D NK+I+ K M YSP+DREEF
Sbjct: 228 VISAFTEVEKLLDSICSEHPLDERINKGKFEAQITLLDP--NKVIKCKPMQYSPQDREEF 285
Query: 353 SIQIKELLDLKVIEPSKSPFSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPN 174
QI+ELL L +I PSKSP SSPAFMV RMVI+Y LN TK DGY+ PN
Sbjct: 286 KTQIEELLKLGIIRPSKSPHSSPAFMVRNHAEIKRGKARMVINYKKLNDNTKGDGYLLPN 345
Query: 173 MQSLLQLIKGKRIFSSFDLKSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
+ LLQ I GK +SSFD KSGF +VR ET LTAFSCPQ +++W V+PFGL+QA
Sbjct: 346 KEQLLQRIGGKTYYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQA 402
>gb|AAA21736.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 680
Score = 169 bits (427), Expect = 9e-40
Identities = 88/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D NK I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 225 PLDPNKTKQWMKASIKLSDP--NKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 282
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 283 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 342
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 343 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 380
>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
polyprotein [Horseradish latent virus]
Length = 679
Score = 168 bits (426), Expect = 1e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP +KG A I++ D K+I+ K M YSP DREEF QI+ELLDLKVI PSKSP
Sbjct: 224 PLDPEKSKGWMQASIKLSDP--TKVIKVKPMKYSPMDREEFEKQIQELLDLKVIRPSKSP 281
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +N T D Y PN LL LI+GK+IFSSFD
Sbjct: 282 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNDATVGDAYNLPNKDELLTLIRGKKIFSSFDC 341
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +VR DEE+K LTAF+CPQ +++W VVPFG++QA
Sbjct: 342 KSGFWQVRLDEESKSLTAFTCPQGHYEWNVVPFGMKQA 379
>gb|ABX80508.1| RdRp [Dahlia mosaic virus]
Length = 387
Score = 167 bits (423), Expect = 2e-39
Identities = 87/158 (55%), Positives = 110/158 (69%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K A I++ D ++R K MVYSP+DR+EF IQIKELLDLKVIEPSKS
Sbjct: 163 PIDPAKSKAWMKASIKLADP--KSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQ 220
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y LN+ T D + PNMQ L+ L++GK IFSSFD
Sbjct: 221 HMSPAFLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDC 280
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ +FQW VVPFGL+QA
Sbjct: 281 KSGFWQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQA 318
>gb|ABX80507.1| RdRp [Dahlia mosaic virus]
Length = 387
Score = 167 bits (423), Expect = 2e-39
Identities = 87/158 (55%), Positives = 110/158 (69%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K A I++ D ++R K MVYSP+DR+EF IQIKELLDLKVIEPSKS
Sbjct: 163 PIDPAKSKAWMKASIKLADP--KSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQ 220
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y LN+ T D + PNMQ L+ L++GK IFSSFD
Sbjct: 221 HMSPAFLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDC 280
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ +FQW VVPFGL+QA
Sbjct: 281 KSGFWQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQA 318
>gb|ABX80505.1| RdRp [Dahlia mosaic virus]
Length = 387
Score = 167 bits (423), Expect = 2e-39
Identities = 87/158 (55%), Positives = 110/158 (69%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K A I++ D ++R K MVYSP+DR+EF IQIKELLDLKVIEPSKS
Sbjct: 163 PIDPAKSKAWMKASIKLADP--KSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQ 220
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y LN+ T D + PNMQ L+ L++GK IFSSFD
Sbjct: 221 HMSPAFLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDC 280
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ +FQW VVPFGL+QA
Sbjct: 281 KSGFWQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQA 318
>gb|ABX80504.1| RdRp [Carnation etched ring virus]
Length = 394
Score = 167 bits (423), Expect = 2e-39
Identities = 86/158 (54%), Positives = 109/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K TA IE+ D I++ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 170 PIDPEKSKQWMTATIELIDP--KTIVKVKPMSYSPSDREEFDKQIKELLDLKVIKPSKSP 227
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y +NK TK D + PN LL L++GK+I+SSFD
Sbjct: 228 HMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLALVRGKKIYSSFDC 287
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ ++QW VVPFGL+QA
Sbjct: 288 KSGFWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQA 325
>gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]
Length = 673
Score = 167 bits (423), Expect = 2e-39
Identities = 87/158 (55%), Positives = 110/158 (69%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K A I++ D ++R K MVYSP+DR+EF IQIKELLDLKVIEPSKS
Sbjct: 219 PIDPAKSKAWMKASIKLADP--KSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQ 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y LN+ T D + PNMQ L+ L++GK IFSSFD
Sbjct: 277 HMSPAFLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ +FQW VVPFGL+QA
Sbjct: 337 KSGFWQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQA 374
>gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]
Length = 673
Score = 167 bits (423), Expect = 2e-39
Identities = 87/158 (55%), Positives = 110/158 (69%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K A I++ D ++R K MVYSP+DR+EF IQIKELLDLKVIEPSKS
Sbjct: 219 PIDPAKSKAWMKASIKLADP--KSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQ 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y LN+ T D + PNMQ L+ L++GK IFSSFD
Sbjct: 277 HMSPAFLVEKEAEKGRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ +FQW VVPFGL+QA
Sbjct: 337 KSGFWQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQA 374
>gb|AHA91342.1| reverse transcriptase [Cauliflower mosaic virus]
gi|558762564|gb|AHA91352.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 674
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 219 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 277 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 337 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 374
>gb|AHA91338.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 219 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 277 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 337 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 374
>gb|AHA91331.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 219 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 277 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 337 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 374
>gb|AHA91317.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 219 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 277 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 337 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 374
>gb|ABX80506.1| RdRp [Dahlia mosaic virus]
Length = 387
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 110/158 (69%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
P+DP +K A I++ D ++R K MVYSP+DR+EF IQIKELLDLKVIEPSKS
Sbjct: 163 PIDPAKSKAWMKASIKLADP--KSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQ 220
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
SPAF+V RMV++Y LN+ T D + PNMQ L+ L++GK IFSSFD
Sbjct: 221 HMSPAFLVEKEAEKRRGKKRMVVNYXKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDC 280
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++ LTAF+CPQ +FQW VVPFGL+QA
Sbjct: 281 KSGFWQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQA 318
>gb|ABX80502.1| RdRp [Cauliflower mosaic virus]
Length = 401
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 177 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 234
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 235 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 294
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 295 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 332
>gb|ABX80501.1| RdRp [Cauliflower mosaic virus]
Length = 401
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 177 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 234
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 235 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 294
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 295 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 332
>dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 219 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 277 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 337 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 374
>dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 167 bits (422), Expect = 3e-39
Identities = 87/158 (55%), Positives = 108/158 (68%)
Frame = -2
Query: 476 PLDPRINKGKFTARIEMFDEFRNKIIRSKAMVYSPKDREEFSIQIKELLDLKVIEPSKSP 297
PLDP K A I++ D +K I+ K M YSP DREEF QIKELLDLKVI+PSKSP
Sbjct: 219 PLDPNKTKQWMKASIKLSDP--SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSP 276
Query: 296 FSSPAFMVXXXXXXXXXXXRMVIDYSTLNKYTKNDGYIFPNMQSLLQLIKGKRIFSSFDL 117
+PAF+V RMV++Y +NK T D Y PN LL LI+GK+IFSSFD
Sbjct: 277 HMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDC 336
Query: 116 KSGFHRVRFDEETKPLTAFSCPQENFQWTVVPFGLQQA 3
KSGF +V D+E++PLTAF+CPQ +++W VVPFGL+QA
Sbjct: 337 KSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQA 374