BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00036846
         (573 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    84   2e-23
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      90   2e-23
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    89   3e-23
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...    89   4e-23
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    89   5e-23
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      89   5e-23
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         89   7e-23
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          89   9e-23
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]            89   9e-23
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    91   1e-22
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    89   2e-22
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...    89   2e-22
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      89   2e-22
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    89   3e-22
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    89   3e-22
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...    87   7e-22
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         80   1e-21
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 87   3e-21
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                87   3e-21
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]            88   5e-20

>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 83.6 bits (205), Expect(2) = 2e-23
 Identities = 37/93 (39%), Positives = 59/93 (63%)
 Frame = +3

Query: 285  VLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIFLL 464
            V+GKQ R+ F+  +H +  +L Y+ S DLWGP+   +H G RY+++  DD+SR VW++ L
Sbjct: 784  VMGKQRRVKFSMGSHTTNGVLEYIHS-DLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFL 842

Query: 465  K*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            K   + F  F+  K ++E +TG  ++ LRT  G
Sbjct: 843  KAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNG 875



 Score = 52.4 bits (124), Expect(2) = 2e-23
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +2

Query: 47  GEYLKIFKGSLMQMK*LIKNGLHVISA*PILGTRAAAFKSLVDN-TSLWHRRLGYISLKG 223
           G  L++ KG+L+ MK  +++G++ +    +LGT A       DN T LWHRRLG++S KG
Sbjct: 704 GGVLRVSKGALVVMKGRLQHGIYTLMGSSVLGTAAVE----EDNCTELWHRRLGHMSEKG 759

Query: 224 LQILKSQRIFAEEQINPFLQC 286
           L IL  Q + +  +      C
Sbjct: 760 LSILSKQGLLSGAETGKLKFC 780


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 89.7 bits (221), Expect(2) = 2e-23
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 442 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPAHKTSFGGARYMMTIVDDYSRKVWPY 500

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 501 FLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNG 535



 Score = 46.2 bits (108), Expect(2) = 2e-23
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSLV--DNTSLWHRRLGYISLKGL 226
           LK+ KGSL+ MK  IK+  L+ +    ILG  AA F SL   D T+LWH RLG++S  GL
Sbjct: 361 LKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSDATNLWHMRLGHMSEIGL 420

Query: 227 QILKSQRIFAEEQINPFLQC 286
             L  + +   + I     C
Sbjct: 421 AELSKRGLLDGQSIRKLKFC 440


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 88.6 bits (218), Expect(2) = 3e-23
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 436 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYIMTIVDDYSRKVWPY 494

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 495 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 529



 Score = 46.6 bits (109), Expect(2) = 3e-23
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L  + TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 334 SLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 393

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I     C
Sbjct: 394 SNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFC 434


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score = 89.4 bits (220), Expect(2) = 4e-23
 Identities = 45/95 (47%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K +  G RY M+I DDYSR VW +
Sbjct: 409 HCIFGKHKRVKFTTSTHTTEGILDYVHS-DLWGPARKRSFGGARYMMTIVDDYSRKVWPY 467

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK   +AF  F+  K ++E QT  K++VLRT  G
Sbjct: 468 FLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNG 502



 Score = 45.4 bits (106), Expect(2) = 4e-23
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
 Frame = +2

Query: 5   LFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSLV 172
           L   +TL R G ++ G    LK+ KGSL+ MK  IKN  L+ +    I+G  AA   SL 
Sbjct: 311 LISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVAAVTDSL- 369

Query: 173 DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
            N+ LWH RLG++S  GL  L  + +   + I     C
Sbjct: 370 SNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFC 407


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score = 88.6 bits (218), Expect(2) = 5e-23
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 505 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPACKTSFGGARYMMTIVDDYSRKVWPY 563

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 564 FLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNG 598



 Score = 45.8 bits (107), Expect(2) = 5e-23
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 403 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 462

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I     C
Sbjct: 463 SNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFC 503


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 88.6 bits (218), Expect(2) = 5e-23
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 505 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPACKTSFGGARYMMTIVDDYSRKVWPY 563

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 564 FLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNG 598



 Score = 45.8 bits (107), Expect(2) = 5e-23
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 403 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 462

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I     C
Sbjct: 463 SNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFC 503


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 89.0 bits (219), Expect(2) = 7e-23
 Identities = 44/95 (46%), Positives = 62/95 (65%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 470 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYMMTIVDDYSRKVWPY 528

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF+ F+  K ++E QT  K+++LRT  G
Sbjct: 529 FLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNG 563



 Score = 45.1 bits (105), Expect(2) = 7e-23
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  A    SL
Sbjct: 368 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSL 427

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I+    C
Sbjct: 428 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFC 468


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 88.6 bits (218), Expect(2) = 9e-23
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 302 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYIMTIVDDYSRKVWPY 360

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 361 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 395



 Score = 45.1 bits (105), Expect(2) = 9e-23
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 200 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 259

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I     C
Sbjct: 260 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFC 300


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score = 88.6 bits (218), Expect(2) = 9e-23
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 302 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYIMTIVDDYSRKVWPY 360

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 361 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 395



 Score = 45.1 bits (105), Expect(2) = 9e-23
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 200 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 259

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I     C
Sbjct: 260 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFC 300


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 90.9 bits (224), Expect(2) = 1e-22
 Identities = 46/95 (48%), Positives = 60/95 (63%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + V GK HR  F  A H++K  L Y+ S D WGP    +  G R+F+SI DDYSRM W++
Sbjct: 448 HCVFGKLHRNKFPKAIHRTKGTLDYIHS-DCWGPCRVESLGGCRFFVSIIDDYSRMTWVY 506

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
           ++K   +AF  F+  K LMENQTG KI+ LRT  G
Sbjct: 507 MMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNG 541



 Score = 42.4 bits (98), Expect(2) = 1e-22
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNGLHVISA*PILGTRAAAFKSL--VDNTSLWHRRLGYISLKGLQ 229
           L+++KGS + +K +++  L+ +    + G+   A       D T LWH RLG++  +G+Q
Sbjct: 368 LRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQ 427

Query: 230 ILKSQRIFAEEQINPFLQC 286
           IL  + + A  ++     C
Sbjct: 428 ILSKEDLLAGHKVKSLEFC 446


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score = 88.6 bits (218), Expect(2) = 2e-22
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 677 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGTRYMMTIVDDYSRKVWPY 735

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 736 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 770



 Score = 43.9 bits (102), Expect(2) = 2e-22
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 575 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 634

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG+++  GL  L  + +   + I     C
Sbjct: 635 SNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFC 675


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score = 88.6 bits (218), Expect(2) = 2e-22
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 470 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGTRYMMTIVDDYSRKVWPY 528

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 529 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 563



 Score = 43.9 bits (102), Expect(2) = 2e-22
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL
Sbjct: 368 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 427

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG+++  GL  L  + +   + I     C
Sbjct: 428 SNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFC 468


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 88.6 bits (218), Expect(2) = 2e-22
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 379 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYMMTIVDDYSRKVWPY 437

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 438 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 472



 Score = 43.9 bits (102), Expect(2) = 2e-22
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
 Frame = +2

Query: 2   TLFPYTTLFRSG-KFEGE--YLKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSL 169
           +L    TL R G K+ G    LK+ KGSL+ MK  IK   L+ +    ILG  AA   SL
Sbjct: 277 SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSL 336

Query: 170 V--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
              D T+LWH RLG++S  GL  L  + +   + I     C
Sbjct: 337 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFC 377


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1262

 Score = 88.6 bits (218), Expect(2) = 3e-22
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 485 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYMMTIVDDYSRKVWPY 543

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 544 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 578



 Score = 43.1 bits (100), Expect(2) = 3e-22
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSLV--DNTSLWHRRLGYISLKGL 226
           LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL   D T+LWH RLG++S  GL
Sbjct: 404 LKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 463

Query: 227 QILKSQRIFAEEQINPFLQC 286
             L  + +   + I     C
Sbjct: 464 AELSKRGLLDGQSIKKLKFC 483


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 88.6 bits (218), Expect(2) = 3e-22
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I DDYSR VW +
Sbjct: 431 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYMMTIVDDYSRKVWPY 489

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LRT  G
Sbjct: 490 FLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 524



 Score = 43.1 bits (100), Expect(2) = 3e-22
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSLV--DNTSLWHRRLGYISLKGL 226
           LK+ KGSL+ MK  IK+  L+ +    ILG  AA   SL   D T+LWH RLG++S  GL
Sbjct: 350 LKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 409

Query: 227 QILKSQRIFAEEQINPFLQC 286
             L  + +   + I     C
Sbjct: 410 AELSKRGLLDGQSIKKLKFC 429


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score = 86.7 bits (213), Expect(2) = 7e-22
 Identities = 45/95 (47%), Positives = 59/95 (62%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + VLGKQ R+ F TA H +K IL Y+ S D+WGPA   +  G  YF++  DD+SR VW+F
Sbjct: 394 HCVLGKQRRVKFGTAIHNTKGILDYVHS-DVWGPAKTPSIGGRHYFVTFVDDFSRRVWVF 452

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            +K   D    F   KA +EN TG KI+VL+T  G
Sbjct: 453 TMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNG 487



 Score = 43.9 bits (102), Expect(2) = 7e-22
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNGLHVISA*PILGTRAAAFKSL---VDNTSLWHRRLGYISLKGL 226
           LK   G+L+ +K ++KN L+      ++GT AAA  S     +   LWH RLG+   K L
Sbjct: 313 LKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSL 372

Query: 227 QILKSQ 244
           QIL  Q
Sbjct: 373 QILTKQ 378


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 79.7 bits (195), Expect(2) = 1e-21
 Identities = 43/93 (46%), Positives = 55/93 (59%)
 Frame = +3

Query: 285 VLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIFLL 464
           + GK HR  F    H SK +L Y    D WGPA   +  G RYFMS+ DDYSR VWI++L
Sbjct: 462 IFGKSHRSKFNKGEHMSKQVLDYAHI-DHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYIL 520

Query: 465 K*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
           K    A   F+  K+L+ENQ+  K++ LRT  G
Sbjct: 521 KIKDQALEKFKVWKSLVENQSDFKLKCLRTDNG 553



 Score = 50.1 bits (118), Expect(2) = 1e-21
 Identities = 27/77 (35%), Positives = 43/77 (55%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNGLHVISA*PILGTRAAAFKSLVDNTSLWHRRLGYISLKGLQIL 235
           L++ KG+ + MK + +NGL+V+    +      +  S  D T LWH RLG++S+KGLQ L
Sbjct: 382 LEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQEL 441

Query: 236 KSQRIFAEEQINPFLQC 286
             Q +   ++I     C
Sbjct: 442 SKQGLLGGDRIQQLEFC 458


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 87.0 bits (214), Expect(2) = 3e-21
 Identities = 43/95 (45%), Positives = 62/95 (65%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I +DYSR VW +
Sbjct: 455 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYMMTIVNDYSRKVWPY 513

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF+ F+  K ++E QT  K+++LRT  G
Sbjct: 514 FLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNG 548



 Score = 41.6 bits (96), Expect(2) = 3e-21
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSLV--DNTSLWHRRLGYISLKGL 226
           LK+ KGSL+ MK  IK+  L+ +    ILG  A    SL   D T+LWH RLG++S  GL
Sbjct: 374 LKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 433

Query: 227 QILKSQRIFAEEQINPFLQC 286
             L  + +   + I     C
Sbjct: 434 AELSMRGLLDGQSIGKLKFC 453


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 87.0 bits (214), Expect(2) = 3e-21
 Identities = 43/95 (45%), Positives = 62/95 (65%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK  R+ F T+TH ++ IL Y+ S DLWGPA K++  G RY M+I +DYSR VW +
Sbjct: 287 HCIFGKHKRVKFNTSTHTTEGILDYVHS-DLWGPARKTSFGGARYMMTIVNDYSRKVWPY 345

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF+ F+  K ++E QT  K+++LRT  G
Sbjct: 346 FLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNG 380



 Score = 41.6 bits (96), Expect(2) = 3e-21
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +2

Query: 56  LKIFKGSLMQMK*LIKNG-LHVISA*PILGTRAAAFKSLV--DNTSLWHRRLGYISLKGL 226
           LK+ KGSL+ MK  IK+  L+ +    ILG  A    SL   D T+LWH RLG++S  GL
Sbjct: 206 LKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 265

Query: 227 QILKSQRIFAEEQINPFLQC 286
             L  + +   + I     C
Sbjct: 266 AELSMRGLLDGQSIGKLKFC 285


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score = 87.8 bits (216), Expect(2) = 5e-20
 Identities = 43/95 (45%), Positives = 60/95 (63%)
 Frame = +3

Query: 279 YSVLGKQHRLHFATATHKSKAIL*YLDSKDLWGPASKSTHMGYRYFMSITDDYSRMVWIF 458
           + + GK HR+ F T+TH ++ IL Y+ S DLWGP  K++  G RY M+I DDYSR VW +
Sbjct: 291 HCIFGKHHRVKFNTSTHTTEGILDYVHS-DLWGPTCKTSFGGARYMMTIIDDYSRKVWPY 349

Query: 459 LLK*NLDAFSNFQN*KALMENQTGNKIEVLRTKMG 563
            LK    AF  F+  K ++E QT  K+++LR   G
Sbjct: 350 FLKHKYQAFDVFKEWKTMVERQTERKVKILRPDNG 384



 Score = 36.6 bits (83), Expect(2) = 5e-20
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 131 PILGTRAAAFKSLV--DNTSLWHRRLGYISLKGLQILKSQRIFAEEQINPFLQC 286
           PILG  AA   SL   D T+LWH RLG++S  GL  L  + +   + I   + C
Sbjct: 236 PILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGMLDGQSIGKLIFC 289