BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00029803
         (1996 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012840385.1| PREDICTED: RNA pseudouridine synthase 3, mit...   458   0.0  
gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Erythra...   451   0.0  
ref|XP_012854072.1| PREDICTED: RNA pseudouridine synthase 3, mit...   445   0.0  
ref|XP_012853147.1| PREDICTED: RNA pseudouridine synthase 3, mit...   440   0.0  
emb|CDO98596.1| unnamed protein product [Coffea canephora]            412   0.0  
gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial...   423   0.0  
ref|XP_012444478.1| PREDICTED: RNA pseudouridine synthase 3, mit...   409   0.0  
gb|KHG09609.1| hypothetical protein F383_12972 [Gossypium arboreum]   392   0.0  
ref|XP_012068449.1| PREDICTED: RNA pseudouridine synthase 3, mit...   392   0.0  
ref|XP_004243668.1| PREDICTED: RNA pseudouridine synthase 3, mit...   384   0.0  
ref|XP_012068447.1| PREDICTED: RNA pseudouridine synthase 3, mit...   384   0.0  
emb|CDX88490.1| BnaC06g39340D [Brassica napus]                        359   e-178
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   353   e-177
emb|CDX87423.1| BnaA07g34500D [Brassica napus]                        353   e-177
ref|XP_009106606.1| PREDICTED: RNA pseudouridine synthase 3, mit...   357   e-176
ref|XP_010927194.1| PREDICTED: RNA pseudouridine synthase 3, mit...   365   e-174
ref|XP_010323966.1| PREDICTED: RNA pseudouridine synthase 3, mit...   345   e-173
ref|XP_008807168.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   363   e-171
ref|XP_009401551.1| PREDICTED: RNA pseudouridine synthase 3, mit...   357   e-171
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo...   343   e-166

>ref|XP_012840385.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like
            [Erythranthe guttatus] gi|848908360|ref|XP_012853148.1|
            PREDICTED: RNA pseudouridine synthase 3,
            mitochondrial-like isoform X2 [Erythranthe guttatus]
          Length = 475

 Score =  458 bits (1179), Expect(2) = 0.0
 Identities = 222/297 (74%), Positives = 251/297 (84%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            MR   L+R  +    H  R++IRPP PA AKA++RVSNN+AHLG PKEGPKP+QLLSLPP
Sbjct: 1    MRNKLLNRNTISTVWHNRRSKIRPPPPASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPP 60

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKG 1130
            FPG+PLPGR S S  HVTAISWLKYYFDD+ PPVIQ HFNK LV+MECL+S+  S S++G
Sbjct: 61   FPGNPLPGRNSTSVEHVTAISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRG 120

Query: 1129 QPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYK 950
            Q +S  KIK +E++E G RVYVPVSVAE+++SKRFDVIPSGTL PNADEI YLQRLVKYK
Sbjct: 121  QTMSTRKIKPSEIVEEGDRVYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYK 180

Query: 949  DSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRT 770
            DSAILVLNKPPKLPVKGN+PVHNSMD      LSYDYDEGPKLVHRLDRESSGLLLMGRT
Sbjct: 181  DSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRT 240

Query: 769  EESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            +ESISYLHWLFSDV+K  S SK W+DAC+  YQRYWALVIG P +KEG+ICAPLTKV
Sbjct: 241  KESISYLHWLFSDVRKAASFSKEWSDACDAMYQRYWALVIGVPNQKEGVICAPLTKV 297



 Score =  295 bits (754), Expect(2) = 0.0
 Identities = 141/180 (78%), Positives = 159/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTE V+L++NS LEASQEAIT YRVLGPMINGCSWIEL P T RKHQLRVHCAE
Sbjct: 297 VLLNDGKTEMVILSHNSGLEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAE 356

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H++WKQMPR+DFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL
Sbjct: 357 ALGTPIVGDYKYGWFVHSKWKQMPRLDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 416

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           H RE+VLPNI KF+ LH++ +  NY  D    ++PD+LRFV  MP HMKISWNLMSSYLV
Sbjct: 417 HSREMVLPNIEKFIELHKHMSG-NYNVDPELCAKPDILRFVVPMPKHMKISWNLMSSYLV 475


>gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Erythranthe guttata]
          Length = 460

 Score =  451 bits (1161), Expect(2) = 0.0
 Identities = 217/280 (77%), Positives = 245/280 (87%)
 Frame = -1

Query: 1438 SRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPGHPLPGRKSASAYHV 1259
            +R++IRPP PA AKA++RVSNN+AHLG PKEGPKP+QLLSLPPFPG+PLPGR S S  HV
Sbjct: 3    TRSKIRPPPPASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPPFPGNPLPGRNSTSVEHV 62

Query: 1258 TAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQPLSMIKIKHNEVIEVG 1079
            TAISWLKYYFDD+ PPVIQ HFNK LV+MECL+S+  S S++GQ +S  KIK +E++E G
Sbjct: 63   TAISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRGQTMSTRKIKPSEIVEEG 122

Query: 1078 ARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAILVLNKPPKLPVKG 899
             RVYVPVSVAE+++SKRFDVIPSGTL PNADEI YLQRLVKYKDSAILVLNKPPKLPVKG
Sbjct: 123  DRVYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYKDSAILVLNKPPKLPVKG 182

Query: 898  NMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESISYLHWLFSDVKKG 719
            N+PVHNSMD      LSYDYDEGPKLVHRLDRESSGLLLMGRT+ESISYLHWLFSDV+K 
Sbjct: 183  NLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSDVRKA 242

Query: 718  KSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
             S SK W+DAC+  YQRYWALVIG P +KEG+ICAPLTKV
Sbjct: 243  ASFSKEWSDACDAMYQRYWALVIGVPNQKEGVICAPLTKV 282



 Score =  295 bits (754), Expect(2) = 0.0
 Identities = 141/180 (78%), Positives = 159/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTE V+L++NS LEASQEAIT YRVLGPMINGCSWIEL P T RKHQLRVHCAE
Sbjct: 282 VLLNDGKTEMVILSHNSGLEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAE 341

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H++WKQMPR+DFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL
Sbjct: 342 ALGTPIVGDYKYGWFVHSKWKQMPRLDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 401

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           H RE+VLPNI KF+ LH++ +  NY  D    ++PD+LRFV  MP HMKISWNLMSSYLV
Sbjct: 402 HSREMVLPNIEKFIELHKHMSG-NYNVDPELCAKPDILRFVVPMPKHMKISWNLMSSYLV 460


>ref|XP_012854072.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like
            [Erythranthe guttatus] gi|848911213|ref|XP_012854073.1|
            PREDICTED: RNA pseudouridine synthase 3,
            mitochondrial-like [Erythranthe guttatus]
          Length = 475

 Score =  445 bits (1145), Expect(2) = 0.0
 Identities = 218/297 (73%), Positives = 248/297 (83%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            MR   L+++ +    H  R++IRPP PA  KA++RVSNN+AHLG PKEGPKP+QLLSLPP
Sbjct: 1    MRNKLLNQKTISTVWHNRRSKIRPPPPASTKAVLRVSNNIAHLGAPKEGPKPKQLLSLPP 60

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKG 1130
            FPG+PLPGR S S  HVTAISWLKYYFDD+ PPVIQ HFNK LV+MECL+S+  S S+ G
Sbjct: 61   FPGNPLPGRHSTSVEHVTAISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYTG 120

Query: 1129 QPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYK 950
            Q +S  KIK +E++E G RVYVPVSVAE+++SKRFDVIPSGTL PNADEI YLQRLVKYK
Sbjct: 121  QTMSTRKIKPSEIMEEGDRVYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYK 180

Query: 949  DSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRT 770
            DSAILVLNKPPKLPVKGN+ VHNSMD      LSYDYDEGPKLVHRLDRESSGLLLMGRT
Sbjct: 181  DSAILVLNKPPKLPVKGNLLVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRT 240

Query: 769  EESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            +ESISYLHWLFSDV+K  S SK W+DAC+  YQRYWALVIG P +KEG+I APLTKV
Sbjct: 241  KESISYLHWLFSDVRKAASFSKEWSDACDAMYQRYWALVIGVPNQKEGVIFAPLTKV 297



 Score =  295 bits (755), Expect(2) = 0.0
 Identities = 142/180 (78%), Positives = 159/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTE V+L++NS LEASQEAIT YRVLGPMINGCSWIEL P T RKHQLRVHCAE
Sbjct: 297 VLLNDGKTEMVILSHNSGLEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAE 356

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H++WKQMPR++FEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL
Sbjct: 357 ALGTPIVGDYKYGWFVHSKWKQMPRLNFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 416

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           H RE+VLPNI KF+ LH+ K   NY  D    ++PD+LRFVA MP HMKISWNLMSSYLV
Sbjct: 417 HSREMVLPNIEKFIELHKQKPG-NYNVDPELCAKPDILRFVAPMPKHMKISWNLMSSYLV 475


>ref|XP_012853147.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Erythranthe guttatus]
          Length = 513

 Score =  440 bits (1132), Expect(2) = 0.0
 Identities = 221/335 (65%), Positives = 252/335 (75%), Gaps = 38/335 (11%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            MR   L+R  +    H  R++IRPP PA AKA++RVSNN+AHLG PKEGPKP+QLLSLPP
Sbjct: 1    MRNKLLNRNTISTVWHNRRSKIRPPPPASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPP 60

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKG 1130
            FPG+PLPGR S S  HVTAISWLKYYFDD+ PPVIQ HFNK LV+MECL+S+  S S++G
Sbjct: 61   FPGNPLPGRNSTSVEHVTAISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRG 120

Query: 1129 QPLSM--------------------------------------IKIKHNEVIEVGARVYV 1064
            Q +S                                       ++IK +E++E G RVYV
Sbjct: 121  QTMSTRKVIMLLLESCIKLCSYCYEFEYLLHTQITRFYSCNSYVQIKPSEIVEEGDRVYV 180

Query: 1063 PVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAILVLNKPPKLPVKGNMPVH 884
            PVSVAE+++SKRFDVIPSGTL PNADEI YLQRLVKYKDSAILVLNKPPKLPVKGN+PVH
Sbjct: 181  PVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYKDSAILVLNKPPKLPVKGNLPVH 240

Query: 883  NSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESISYLHWLFSDVKKGKSMSK 704
            NSMD      LSYDYDEGPKLVHRLDRESSGLLLMGRT+ESISYLHWLFSDV+K  S SK
Sbjct: 241  NSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSDVRKAASFSK 300

Query: 703  AWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
             W+DAC+  YQRYWALVIG P +KEG+ICAPLTKV
Sbjct: 301  EWSDACDAMYQRYWALVIGVPNQKEGVICAPLTKV 335



 Score =  295 bits (754), Expect(2) = 0.0
 Identities = 141/180 (78%), Positives = 159/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTE V+L++NS LEASQEAIT YRVLGPMINGCSWIEL P T RKHQLRVHCAE
Sbjct: 335 VLLNDGKTEMVILSHNSGLEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAE 394

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H++WKQMPR+DFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL
Sbjct: 395 ALGTPIVGDYKYGWFVHSKWKQMPRLDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 454

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           H RE+VLPNI KF+ LH++ +  NY  D    ++PD+LRFV  MP HMKISWNLMSSYLV
Sbjct: 455 HSREMVLPNIEKFIELHKHMSG-NYNVDPELCAKPDILRFVVPMPKHMKISWNLMSSYLV 513


>emb|CDO98596.1| unnamed protein product [Coffea canephora]
          Length = 465

 Score =  412 bits (1058), Expect(2) = 0.0
 Identities = 212/284 (74%), Positives = 236/284 (83%), Gaps = 1/284 (0%)
 Frame = -1

Query: 1447 RHYSRTR-IRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPGHPLPGRKSAS 1271
            RHYSR++ ++PP       +IRV+NNVAHLG P++GPKP+QLLSLPPFPG PLPGR S++
Sbjct: 15   RHYSRSKKVQPPR------VIRVTNNVAHLGRPRKGPKPRQLLSLPPFPGLPLPGRNSST 68

Query: 1270 AYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQPLSMIKIKHNEV 1091
              HVTAISWLKYYFDDIP  V+QSHFNK LVQME LDS+ SS+S   Q  S  KI HNE 
Sbjct: 69   G-HVTAISWLKYYFDDIPGDVVQSHFNKGLVQMESLDSSMSSKSQGMQTKSTRKINHNEA 127

Query: 1090 IEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAILVLNKPPKL 911
            +E GARV VPVSVAE++ISKRFD+IPSGTL PNADEIEYLQRL    DSAILVLNKPPKL
Sbjct: 128  MEPGARVSVPVSVAEAKISKRFDIIPSGTLYPNADEIEYLQRL----DSAILVLNKPPKL 183

Query: 910  PVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESISYLHWLFSD 731
            PVKGN+P+HNSMD      LSYDYDEGPKLVHRLDRESSGLLLMGRT+ESISYLH LFSD
Sbjct: 184  PVKGNLPIHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHLLFSD 243

Query: 730  VKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            + K KS+SK W DACE TYQRYWALVIG PKEKEGLI AP+TKV
Sbjct: 244  INKAKSLSKGWGDACESTYQRYWALVIGSPKEKEGLIHAPITKV 287



 Score =  310 bits (795), Expect(2) = 0.0
 Identities = 145/180 (80%), Positives = 164/180 (91%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           V+LD+GKTERV++AN S LEA QEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHC+E
Sbjct: 287 VMLDDGKTERVIVANRSGLEAFQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCSE 346

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H++WKQMPRVDFEP +GEPY++RRPEGLDVQKGSVLSKVPLLHL
Sbjct: 347 ALGTPIVGDYKYGWFVHHKWKQMPRVDFEPNSGEPYRLRRPEGLDVQKGSVLSKVPLLHL 406

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+VLPNI KFL +H +K + NY   L   S+PD+LRFVA MPSHMKISWNLMSSYL+
Sbjct: 407 HCREMVLPNIEKFLEIHTSKGS-NYSSKLKYSSKPDVLRFVAPMPSHMKISWNLMSSYLI 465


>gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial [Erythranthe
            guttata]
          Length = 452

 Score =  423 bits (1088), Expect(2) = 0.0
 Identities = 209/278 (75%), Positives = 235/278 (84%)
 Frame = -1

Query: 1432 TRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPGHPLPGRKSASAYHVTA 1253
            ++IRPP PA  KA++RVSNN+AHLG PKEGPKP+QLLSLPPFPG+PLPGR S S  HVTA
Sbjct: 1    SKIRPPPPASTKAVLRVSNNIAHLGAPKEGPKPKQLLSLPPFPGNPLPGRHSTSVEHVTA 60

Query: 1252 ISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQPLSMIKIKHNEVIEVGAR 1073
            ISWLKYYFDD+ PPVIQ HFNK LV+MECL+S+  S S+ GQ +S  KIK +E++E G R
Sbjct: 61   ISWLKYYFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYTGQTMSTRKIKPSEIMEEGDR 120

Query: 1072 VYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAILVLNKPPKLPVKGNM 893
            VYVPVSVAE+++SKRFDVIPSGTL PNADEI YLQRL    DSAILVLNKPPKLPVKGN+
Sbjct: 121  VYVPVSVAENKVSKRFDVIPSGTLHPNADEIMYLQRL----DSAILVLNKPPKLPVKGNL 176

Query: 892  PVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESISYLHWLFSDVKKGKS 713
             VHNSMD      LSYDYDEGPKLVHRLDRESSGLLLMGRT+ESISYLHWLFSDV+K  S
Sbjct: 177  LVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSDVRKAAS 236

Query: 712  MSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
             SK W+DAC+  YQRYWALVIG P +KEG+I APLTKV
Sbjct: 237  FSKEWSDACDAMYQRYWALVIGVPNQKEGVIFAPLTKV 274



 Score =  295 bits (755), Expect(2) = 0.0
 Identities = 142/180 (78%), Positives = 159/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTE V+L++NS LEASQEAIT YRVLGPMINGCSWIEL P T RKHQLRVHCAE
Sbjct: 274 VLLNDGKTEMVILSHNSGLEASQEAITRYRVLGPMINGCSWIELHPLTRRKHQLRVHCAE 333

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H++WKQMPR++FEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL
Sbjct: 334 ALGTPIVGDYKYGWFVHSKWKQMPRLNFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 393

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           H RE+VLPNI KF+ LH+ K   NY  D    ++PD+LRFVA MP HMKISWNLMSSYLV
Sbjct: 394 HSREMVLPNIEKFIELHKQKPG-NYNVDPELCAKPDILRFVAPMPKHMKISWNLMSSYLV 452


>ref|XP_012444478.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Gossypium
            raimondii] gi|823223472|ref|XP_012444479.1| PREDICTED:
            RNA pseudouridine synthase 3, mitochondrial [Gossypium
            raimondii] gi|763789432|gb|KJB56428.1| hypothetical
            protein B456_009G119600 [Gossypium raimondii]
          Length = 472

 Score =  409 bits (1050), Expect(2) = 0.0
 Identities = 206/299 (68%), Positives = 241/299 (80%), Gaps = 2/299 (0%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            M+K  L   +L   RHYSR  + PP PAYA  +IRVSNNVA+LG PK+GPKP+QLLSLPP
Sbjct: 1    MQKNRLGHHLLSLARHYSR--VAPPPPAYADPVIRVSNNVAYLGSPKQGPKPRQLLSLPP 58

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLD--STNSSRSH 1136
            FPGH LPG+ SA+   VTAISWLKYYFD+I    IQSHFNK LV++E  +  + +S    
Sbjct: 59   FPGHHLPGKNSATG-RVTAISWLKYYFDEISDSAIQSHFNKGLVEIESSNPNAADSFIER 117

Query: 1135 KGQPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVK 956
             GQ  S+ KIKHNEV+EVGARV+VPVS+AE+R+SKRFD IPSGTL PNADEI+YL+RLVK
Sbjct: 118  DGQMKSLRKIKHNEVMEVGARVWVPVSIAETRVSKRFDCIPSGTLHPNADEIDYLRRLVK 177

Query: 955  YKDSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMG 776
            YKD AILVLNKPPKLPVKG++PVHNSMD      LSY YDEGPKLVHRLDRESSGLLLMG
Sbjct: 178  YKDYAILVLNKPPKLPVKGSLPVHNSMDALAAAALSYYYDEGPKLVHRLDRESSGLLLMG 237

Query: 775  RTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            RT+ESI++LHWLF+D+   KS  KAWNDAC+  +QRYWALVIG PKE EGLI +PL+K+
Sbjct: 238  RTKESINHLHWLFNDINPAKSSCKAWNDACDAKFQRYWALVIGTPKENEGLIRSPLSKI 296



 Score =  296 bits (759), Expect(2) = 0.0
 Identities = 145/180 (80%), Positives = 157/180 (87%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           +LLD+GKTERV+LA N  LE SQEA+TEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAE
Sbjct: 296 ILLDDGKTERVILAQNVGLEPSQEAVTEYRVLGPMINGCSWVELRPLTSRKHQLRVHCAE 355

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H +WKQMPRVD E  TG+PYK+RRPEGLDVQKGSVLSKVPLLHL
Sbjct: 356 ALGTPIVGDYKYGWFVHRKWKQMPRVDIEQRTGKPYKLRRPEGLDVQKGSVLSKVPLLHL 415

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRELVLPNIAKFL L  N NA    P L    +PDLLRFVA+MP HMKISWNLMSSYLV
Sbjct: 416 HCRELVLPNIAKFLPLLSN-NAETLSPGL--SGKPDLLRFVASMPKHMKISWNLMSSYLV 472


>gb|KHG09609.1| hypothetical protein F383_12972 [Gossypium arboreum]
          Length = 468

 Score =  392 bits (1007), Expect(2) = 0.0
 Identities = 201/302 (66%), Positives = 240/302 (79%), Gaps = 5/302 (1%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            M+K  L   +L   R+YSR  + PP PAYA  +IRVSNNVA+LG PK+GPKP+QLLSLPP
Sbjct: 1    MQKNKLGHHLLSLARYYSR--VAPPPPAYADPVIRVSNNVAYLGSPKQGPKPRQLLSLPP 58

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHK- 1133
            FPGH LPG+ SA+   VTAISWLKYYFD+I    IQSHFNK LV++E   S+N + ++  
Sbjct: 59   FPGHHLPGKNSATG-RVTAISWLKYYFDEISDSAIQSHFNKGLVKIE---SSNPNAAYSF 114

Query: 1132 ----GQPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQR 965
                GQ  S+ KIKHNEV+EVGARV+VPVS+AE+R+S+RFD IPSGTL PNADEI+YL+R
Sbjct: 115  IERDGQMKSLRKIKHNEVMEVGARVWVPVSIAETRVSRRFDCIPSGTLHPNADEIDYLRR 174

Query: 964  LVKYKDSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLL 785
            L    D AILVLNKPPKLPVKG++PVHNSMD      LSYDYDEGPKLVHRLDRESSGLL
Sbjct: 175  L----DYAILVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLL 230

Query: 784  LMGRTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLT 605
            L+GRT+ESIS+LHWLF+D+   KS  KAWNDAC+  +QR+WALVIG PKE EGLI +PL+
Sbjct: 231  LLGRTKESISHLHWLFNDINPAKSSCKAWNDACDAKFQRFWALVIGTPKENEGLIRSPLS 290

Query: 604  KV 599
            K+
Sbjct: 291  KI 292



 Score =  300 bits (767), Expect(2) = 0.0
 Identities = 146/180 (81%), Positives = 158/180 (87%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           +LLD+GKTERV+LA N  LE SQEA+TEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAE
Sbjct: 292 ILLDDGKTERVILAQNVGLEPSQEAVTEYRVLGPMINGCSWVELRPLTSRKHQLRVHCAE 351

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H +WKQMPRVD EP TG+PYK+RRPEGLDVQKGSVLSKVPLLHL
Sbjct: 352 ALGTPIVGDYKYGWFVHRKWKQMPRVDIEPRTGKPYKLRRPEGLDVQKGSVLSKVPLLHL 411

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRELVLPNIAKFL L  N NA    P L    +PDLLRFVA+MP HMKISWNLMSSYLV
Sbjct: 412 HCRELVLPNIAKFLPLLSN-NAETLSPGL--SGKPDLLRFVASMPKHMKISWNLMSSYLV 468


>ref|XP_012068449.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X2 [Jatropha curcas] gi|643734412|gb|KDP41142.1|
            hypothetical protein JCGZ_03633 [Jatropha curcas]
          Length = 463

 Score =  392 bits (1007), Expect(2) = 0.0
 Identities = 203/297 (68%), Positives = 236/297 (79%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            M K    +++L   R YSR  I PP+PAYA+ IIRVSNNVA+LG PK+GPKP+QLLSLPP
Sbjct: 1    MWKNIHYKRVLSKVRSYSR--IAPPAPAYAQPIIRVSNNVAYLGSPKDGPKPRQLLSLPP 58

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKG 1130
            FPG PLPG K++ A  VTAISW+KYYFD+I   VIQSHFNK LVQMEC          +G
Sbjct: 59   FPGLPLPG-KTSEASRVTAISWVKYYFDEILDSVIQSHFNKGLVQMEC-------PIEQG 110

Query: 1129 QPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYK 950
            +   M KIK ++V+EVGA+V++PVSVAE+RISKRFD IPSGTL PNADEIEYLQRLVKYK
Sbjct: 111  EQTFMRKIKPSDVMEVGAKVHIPVSVAETRISKRFDTIPSGTLYPNADEIEYLQRLVKYK 170

Query: 949  DSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRT 770
            DSAI+VLNKPPKLP+KGN+PVHNSMD      LSYDY+EGPKLV RLDRESSGL+LMGR 
Sbjct: 171  DSAIIVLNKPPKLPIKGNLPVHNSMDALAAAALSYDYNEGPKLVQRLDRESSGLILMGRK 230

Query: 769  EESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            +ES+ +L WLFSD KK  S  K WNDAC+   QR+WALVIG P+EKEGLI APL+KV
Sbjct: 231  KESVDHLQWLFSDQKKPSSRFKDWNDACQAKCQRFWALVIGSPEEKEGLIRAPLSKV 287



 Score =  286 bits (732), Expect(2) = 0.0
 Identities = 138/180 (76%), Positives = 158/180 (87%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTER++LA NS  EASQEA+T+YRVLGP INGCSW+EL P TSRKHQLRVHCAE
Sbjct: 287 VLLNDGKTERIVLAQNSGFEASQEALTQYRVLGPTINGCSWVELCPLTSRKHQLRVHCAE 346

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H RWKQM RVD EP +G+PYK+RRPEG+DVQKGSVLSKVPLLHL
Sbjct: 347 ALGTPIVGDYKYGWFVHRRWKQMARVDIEPFSGKPYKLRRPEGIDVQKGSVLSKVPLLHL 406

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE VLPNIAKFL +  N+ + N  P L   ++PDLLRFVA+MP+HMKISWNLMSSYLV
Sbjct: 407 HCREFVLPNIAKFLDI-LNQKSENIHPAL--SAKPDLLRFVASMPTHMKISWNLMSSYLV 463


>ref|XP_004243668.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial isoform X1
            [Solanum lycopersicum] gi|723716591|ref|XP_010323964.1|
            PREDICTED: RNA pseudouridine synthase 3, mitochondrial
            isoform X1 [Solanum lycopersicum]
            gi|723716594|ref|XP_010323965.1| PREDICTED: RNA
            pseudouridine synthase 3, mitochondrial isoform X1
            [Solanum lycopersicum]
          Length = 475

 Score =  384 bits (987), Expect(2) = 0.0
 Identities = 200/296 (67%), Positives = 231/296 (78%), Gaps = 5/296 (1%)
 Frame = -1

Query: 1471 SRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPGHPL 1292
            SR +L   R +SR+          + +IRVSNN+ HLG  K+G KP QLLSLPPFPG PL
Sbjct: 8    SRCLLFLVRRFSRSVGHSAQAYRCEPVIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPL 67

Query: 1291 PGRKSAS-----AYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQ 1127
            PG+K A+     + HVTAISW+KYYFD+IP  VIQSHFNK LVQ+E  +   S    +GQ
Sbjct: 68   PGKKVATGPDQPSCHVTAISWIKYYFDEIPGSVIQSHFNKGLVQLELNELFTSK---EGQ 124

Query: 1126 PLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKD 947
               + KIKH+EV+EVGAR++VP+SVAE+RISKR+DVIPSGTL PNADEI YLQRLV YKD
Sbjct: 125  TRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKD 184

Query: 946  SAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTE 767
             AILVLNKPPKLPVKGN+ VHNSMD      LSY+YDEGP+LVHRLDRESSGL LMGRTE
Sbjct: 185  PAILVLNKPPKLPVKGNLHVHNSMDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTE 244

Query: 766  ESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            ESIS+LH LFS+ K+ KS+SKAWNDAC  TYQRYWALVIG PK KEG+I APLTKV
Sbjct: 245  ESISHLHLLFSNTKRSKSLSKAWNDACGSTYQRYWALVIGSPKVKEGVISAPLTKV 300



 Score =  293 bits (750), Expect(2) = 0.0
 Identities = 141/180 (78%), Positives = 155/180 (86%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+G+TERVMLA  S LEAS EA+TEYR+LGPMINGCSWIELRPHTSRKHQLRVHCAE
Sbjct: 300 VLLDDGRTERVMLAQQSGLEASDEAVTEYRLLGPMINGCSWIELRPHTSRKHQLRVHCAE 359

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H +WKQMPRVD EP TG+PY+++RPEGLDVQKGSVLSKVPLLHL
Sbjct: 360 ALGTPIVGDYKYGWFVHRKWKQMPRVDVEPITGKPYRLKRPEGLDVQKGSVLSKVPLLHL 419

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRELVLPNIAKF+ LH  K   N        S+PDLLRFVA MPS MKISW LMSS L+
Sbjct: 420 HCRELVLPNIAKFIELHSRKTRKNTD----YSSKPDLLRFVAPMPSPMKISWKLMSSCLI 475


>ref|XP_012068447.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Jatropha curcas] gi|802573713|ref|XP_012068448.1|
            PREDICTED: RNA pseudouridine synthase 3,
            mitochondrial-like isoform X1 [Jatropha curcas]
          Length = 472

 Score =  384 bits (987), Expect(2) = 0.0
 Identities = 203/306 (66%), Positives = 236/306 (77%), Gaps = 9/306 (2%)
 Frame = -1

Query: 1489 MRKTFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPP 1310
            M K    +++L   R YSR  I PP+PAYA+ IIRVSNNVA+LG PK+GPKP+QLLSLPP
Sbjct: 1    MWKNIHYKRVLSKVRSYSR--IAPPAPAYAQPIIRVSNNVAYLGSPKDGPKPRQLLSLPP 58

Query: 1309 FPGHPLPGRKSASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKG 1130
            FPG PLPG K++ A  VTAISW+KYYFD+I   VIQSHFNK LVQMEC          +G
Sbjct: 59   FPGLPLPG-KTSEASRVTAISWVKYYFDEILDSVIQSHFNKGLVQMEC-------PIEQG 110

Query: 1129 QPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYK 950
            +   M KIK ++V+EVGA+V++PVSVAE+RISKRFD IPSGTL PNADEIEYLQRLVKYK
Sbjct: 111  EQTFMRKIKPSDVMEVGAKVHIPVSVAETRISKRFDTIPSGTLYPNADEIEYLQRLVKYK 170

Query: 949  DSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKL---------VHRLDRES 797
            DSAI+VLNKPPKLP+KGN+PVHNSMD      LSYDY+EGPKL         V RLDRES
Sbjct: 171  DSAIIVLNKPPKLPIKGNLPVHNSMDALAAAALSYDYNEGPKLLFAYKYFYQVQRLDRES 230

Query: 796  SGLLLMGRTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLIC 617
            SGL+LMGR +ES+ +L WLFSD KK  S  K WNDAC+   QR+WALVIG P+EKEGLI 
Sbjct: 231  SGLILMGRKKESVDHLQWLFSDQKKPSSRFKDWNDACQAKCQRFWALVIGSPEEKEGLIR 290

Query: 616  APLTKV 599
            APL+KV
Sbjct: 291  APLSKV 296



 Score =  286 bits (732), Expect(2) = 0.0
 Identities = 138/180 (76%), Positives = 158/180 (87%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTER++LA NS  EASQEA+T+YRVLGP INGCSW+EL P TSRKHQLRVHCAE
Sbjct: 296 VLLNDGKTERIVLAQNSGFEASQEALTQYRVLGPTINGCSWVELCPLTSRKHQLRVHCAE 355

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H RWKQM RVD EP +G+PYK+RRPEG+DVQKGSVLSKVPLLHL
Sbjct: 356 ALGTPIVGDYKYGWFVHRRWKQMARVDIEPFSGKPYKLRRPEGIDVQKGSVLSKVPLLHL 415

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE VLPNIAKFL +  N+ + N  P L   ++PDLLRFVA+MP+HMKISWNLMSSYLV
Sbjct: 416 HCREFVLPNIAKFLDI-LNQKSENIHPAL--SAKPDLLRFVASMPTHMKISWNLMSSYLV 472


>emb|CDX88490.1| BnaC06g39340D [Brassica napus]
          Length = 473

 Score =  359 bits (922), Expect(2) = e-178
 Identities = 181/301 (60%), Positives = 224/301 (74%), Gaps = 7/301 (2%)
 Frame = -1

Query: 1480 TFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPG 1301
            +F    +  A R YSR  + PP P+    +IRV+NN+AHLG PK GP P+QL+SLPPFPG
Sbjct: 12   SFRHAYLASATRRYSR--VAPPQPS----VIRVTNNIAHLGPPKTGPLPRQLMSLPPFPG 65

Query: 1300 HPLPGRKSASAY-------HVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSR 1142
            HPLPG+ + +         HVTAISW+KYYF+++    IQSHF K LV+ME  D     R
Sbjct: 66   HPLPGKNAVNGADGDGDISHVTAISWVKYYFEEVQDKTIQSHFTKGLVEMEKEDGVRGMR 125

Query: 1141 SHKGQPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRL 962
                      K+KHNEV+++G ++++PVSVAE+RISKR+D IPSGTL PNADEI+YLQRL
Sbjct: 126  ----------KVKHNEVMQIGDKLWLPVSVAETRISKRYDTIPSGTLYPNADEIDYLQRL 175

Query: 961  VKYKDSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLL 782
            V++KDSAI+VLNKPPKLPVKGN+P+HNSMD      LSY  DEGP+LVHRLDRE+SGLL+
Sbjct: 176  VRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSYGNDEGPRLVHRLDRETSGLLV 235

Query: 781  MGRTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTK 602
            MGRT+ESI +LH +FSD K   S  KAWN ACE  YQRYWALVIG PK++EG+I APL+K
Sbjct: 236  MGRTKESIDHLHSVFSDFKGRNSRCKAWNKACEAMYQRYWALVIGSPKDREGVISAPLSK 295

Query: 601  V 599
            V
Sbjct: 296  V 296



 Score =  297 bits (761), Expect(2) = e-178
 Identities = 143/180 (79%), Positives = 159/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+GKT+RV+LA  S  EASQEAITEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAE
Sbjct: 296 VLLDDGKTDRVVLAQGSGFEASQEAITEYRVLGPMINGCSWLELRPVTSRKHQLRVHCAE 355

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWFIH RWKQMP+VD EPTTG+ YK+RRPEGLDVQKGSVLSKVPLLHL
Sbjct: 356 ALGTPIVGDYKYGWFIHKRWKQMPQVDIEPTTGKQYKLRRPEGLDVQKGSVLSKVPLLHL 415

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+VLPNIAKFL +   +     +P +   S+PDLLRFVA+MPSHMKISWN+MSSYLV
Sbjct: 416 HCREMVLPNIAKFLHVLNQRETDPLRPGI--SSKPDLLRFVASMPSHMKISWNIMSSYLV 473


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
            gi|557086377|gb|ESQ27229.1| hypothetical protein
            EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  353 bits (907), Expect(2) = e-177
 Identities = 175/292 (59%), Positives = 222/292 (76%), Gaps = 2/292 (0%)
 Frame = -1

Query: 1468 RQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPGHPLP 1289
            RQ+ LA      +R+ PP       +IRV+NN+A LG PK+GP P+QL+SLPPFPGHPLP
Sbjct: 14   RQVYLAAVTRRYSRVAPPP----STVIRVTNNIAQLGPPKKGPLPRQLMSLPPFPGHPLP 69

Query: 1288 GRKSA--SAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQPLSM 1115
            G+ +      HVTAISW+KYY ++I    IQSHF K LVQME     ++SR  +     +
Sbjct: 70   GKNAGVDEDGHVTAISWVKYYLEEIHDKAIQSHFTKGLVQMEFRGRRDASREKQDGVRPI 129

Query: 1114 IKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAIL 935
             K+KHNEV+++G ++++PVS+AE+RISKR+D IPSGTL PNADEI YLQRLV++KDSAI+
Sbjct: 130  KKVKHNEVMQIGDKIWLPVSIAETRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAII 189

Query: 934  VLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESIS 755
            VLNKPPKLPVKGN+P+HNSMD      LS+  DEGP+L+HRLDRE+SGLL+MGRT+ESI 
Sbjct: 190  VLNKPPKLPVKGNVPIHNSMDALAAAALSFGKDEGPRLLHRLDRETSGLLVMGRTKESID 249

Query: 754  YLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            +LH +FSD K   S  KAWN ACE  YQ+YWALVIG PK+KEG+I AP++KV
Sbjct: 250  HLHSVFSDFKGRDSRCKAWNKACEAMYQQYWALVIGSPKDKEGVISAPISKV 301



 Score =  300 bits (767), Expect(2) = e-177
 Identities = 141/180 (78%), Positives = 162/180 (90%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+GKT+RV+LA  S  EASQEAITEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAE
Sbjct: 301 VLLDDGKTDRVVLARGSGFEASQEAITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAE 360

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H +WKQMP+VD EPT+G+PYK+RRPEGLD+QKGSVLSKVPLLHL
Sbjct: 361 ALGTPIVGDYKYGWFVHKKWKQMPQVDIEPTSGKPYKLRRPEGLDIQKGSVLSKVPLLHL 420

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+VLPNIAKFL +  N+   +  P ++  S+PDLLRFVA+MPSHMKISWN+MSSYLV
Sbjct: 421 HCREMVLPNIAKFLHVLNNQEIDSLHPGII--SKPDLLRFVASMPSHMKISWNIMSSYLV 478


>emb|CDX87423.1| BnaA07g34500D [Brassica napus]
          Length = 471

 Score =  353 bits (907), Expect(2) = e-177
 Identities = 178/299 (59%), Positives = 221/299 (73%), Gaps = 5/299 (1%)
 Frame = -1

Query: 1480 TFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPG 1301
            +FL   +    R +SR  + PP PA    +IRV+NN+AHLG PK GP P+QL+ LPPFPG
Sbjct: 12   SFLQSYLASPTRRFSR--VAPPQPA----VIRVTNNIAHLGPPKTGPLPRQLMYLPPFPG 65

Query: 1300 HPLPGRKSASAY-----HVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSH 1136
            HPLPG+ + +       HVTAISW+KYYF+++    IQSHF K LV ME  D   + R  
Sbjct: 66   HPLPGKNAVNGADGDVGHVTAISWVKYYFEEVNDKTIQSHFTKGLVVMEKEDGVRAMR-- 123

Query: 1135 KGQPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVK 956
                    K+KHNEV+++G ++++PVS+AE+RISKR+D IPSGTL PNADEI YLQRLV+
Sbjct: 124  --------KVKHNEVMQIGDKLWLPVSIAETRISKRYDTIPSGTLYPNADEIAYLQRLVR 175

Query: 955  YKDSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMG 776
            +KDSAI+VLNKPPKLPVKGN+P+HNSMD      LSY  DEGP+LVHRLDRE+SGLL+MG
Sbjct: 176  FKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSYGNDEGPRLVHRLDRETSGLLVMG 235

Query: 775  RTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            RT+ES  +LH +FSD K   S  KAWN ACE  YQRYWALVIG PK+KEG++ APL+KV
Sbjct: 236  RTKESKDHLHSVFSDYKGRNSRCKAWNKACEAMYQRYWALVIGSPKDKEGIVSAPLSKV 294



 Score =  298 bits (764), Expect(2) = e-177
 Identities = 144/180 (80%), Positives = 160/180 (88%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+GKT+RV+LA  S  EASQEAITEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAE
Sbjct: 294 VLLDDGKTDRVVLAQGSGFEASQEAITEYRVLGPMINGCSWLELRPVTSRKHQLRVHCAE 353

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWFIH RWKQMP+VD EPTTG+ YK+RRPEGLDVQKGSVLSKVPLLHL
Sbjct: 354 ALGTPIVGDYKYGWFIHKRWKQMPQVDIEPTTGKQYKLRRPEGLDVQKGSVLSKVPLLHL 413

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+VLPNIAKFL +   + A   +P +   S+PDLLRFVA+MPSHMKISWN+MSSYLV
Sbjct: 414 HCREMVLPNIAKFLHVLSQREADPLRPGI--SSKPDLLRFVASMPSHMKISWNIMSSYLV 471


>ref|XP_009106606.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Brassica
            rapa]
          Length = 471

 Score =  357 bits (915), Expect(2) = e-176
 Identities = 180/299 (60%), Positives = 222/299 (74%), Gaps = 5/299 (1%)
 Frame = -1

Query: 1480 TFLSRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPG 1301
            +FL   +    R +SR  + PP PA    +IRV+NN+AHLG PK GP P+QL+ LPPFPG
Sbjct: 12   SFLQSYLASPTRRFSR--VAPPQPA----VIRVTNNIAHLGPPKTGPLPRQLMYLPPFPG 65

Query: 1300 HPLPGRKSASAY-----HVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSH 1136
            HPLPG+ + +       HVTAISW+KYYF+++    IQSHF K LV ME  D   + R  
Sbjct: 66   HPLPGKNAVNGADGDVGHVTAISWVKYYFEEVNDKTIQSHFTKGLVVMEKEDGVRAMR-- 123

Query: 1135 KGQPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVK 956
                    K+KHNEV++VG ++++PVS+AE+RISKR+D IPSGTL PNADEI YLQRLV+
Sbjct: 124  --------KVKHNEVMQVGDKLWLPVSIAETRISKRYDTIPSGTLYPNADEIAYLQRLVR 175

Query: 955  YKDSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMG 776
            +KDSAI+VLNKPPKLPVKGN+P+HNSMD      LSY  DEGP+LVHRLDRE+SGLL+MG
Sbjct: 176  FKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSYGNDEGPRLVHRLDRETSGLLVMG 235

Query: 775  RTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            RT+ESI +LH +FSD K   S  KAWN ACE  YQRYWALVIG PK+KEG++ APL+KV
Sbjct: 236  RTKESIDHLHSVFSDFKGRNSRCKAWNKACEAMYQRYWALVIGSPKDKEGIVSAPLSKV 294



 Score =  292 bits (748), Expect(2) = e-176
 Identities = 140/180 (77%), Positives = 158/180 (87%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+GKT+RV+LA  S  + SQEAIT+YRVLGPMINGCSW+ELRP TSRKHQLRVHCAE
Sbjct: 294 VLLDDGKTDRVVLAQGSGFKTSQEAITKYRVLGPMINGCSWLELRPITSRKHQLRVHCAE 353

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWFIH RWKQMP+VD EPTTG+ YK+RRPEGLD+QKGSVLSKVPLLHL
Sbjct: 354 ALGTPIVGDYKYGWFIHKRWKQMPQVDIEPTTGKQYKLRRPEGLDIQKGSVLSKVPLLHL 413

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+VLPNIAKFL +   + A    P +   S+PDLLRFVA+MPSHMKISWN+MSSYLV
Sbjct: 414 HCREMVLPNIAKFLHVLSQREADPLHPGI--SSKPDLLRFVASMPSHMKISWNIMSSYLV 471


>ref|XP_010927194.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Elaeis
            guineensis]
          Length = 483

 Score =  365 bits (937), Expect(2) = e-174
 Identities = 189/311 (60%), Positives = 235/311 (75%), Gaps = 13/311 (4%)
 Frame = -1

Query: 1492 LMRKTFLSRQ--ILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLS 1319
            ++R+ +  R   +L A RH SR  + PP P  A+ +IRVSNNVA LG PKEGPKP+QLLS
Sbjct: 1    MLRRRYCPRPPALLRAVRHLSR--LAPPRPVTAEPVIRVSNNVARLGEPKEGPKPRQLLS 58

Query: 1318 LPPFPG---HPLPGRKSASAY------HVTAISWLKYYFDDIPPPVIQSHFNKVLVQMEC 1166
            LPPFP    +PLPGRK   A        +TAI+W+K+YF DIPP VIQSHF K LV +E 
Sbjct: 59   LPPFPSSHTNPLPGRKRDPAADPSKPRRITAITWVKHYFADIPPEVIQSHFRKGLVHVE- 117

Query: 1165 LDSTNSSRSHKG--QPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPN 992
              S +     KG  Q   + ++KHN+V+EVG ++++PVSVAE++I+KR+D IP+ TL PN
Sbjct: 118  -SSNHGVPPDKGDHQMCQLKRVKHNDVMEVGMKIHIPVSVAETKITKRYDTIPTATLHPN 176

Query: 991  ADEIEYLQRLVKYKDSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHR 812
            ADEIEY++RLV YKDSAI+VLNKPPK+PVKGN+PVHNSMD      LSY  ++GPKLVHR
Sbjct: 177  ADEIEYIRRLVIYKDSAIIVLNKPPKVPVKGNLPVHNSMDVLAAAALSYGNEQGPKLVHR 236

Query: 811  LDRESSGLLLMGRTEESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEK 632
            LDRESSGLLLMGRT+E+ + LHWLF+++   KS S+ WNDACE T QRYWALVIGCPKE+
Sbjct: 237  LDRESSGLLLMGRTKETFARLHWLFANINLAKSSSQIWNDACEATMQRYWALVIGCPKER 296

Query: 631  EGLICAPLTKV 599
            EGLI APL+KV
Sbjct: 297  EGLISAPLSKV 307



 Score =  278 bits (711), Expect(2) = e-174
 Identities = 132/180 (73%), Positives = 153/180 (85%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+GKTERV+LA+ S ++ SQEA+TEYRV+GP INGCSW+ELRP T RKHQLRVHCAE
Sbjct: 307 VLLDDGKTERVILAHPSGIDGSQEAVTEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAE 366

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H RWKQMPRVD+EP T  PYK+RRPEGL+VQKGSVLSKVPLLHL
Sbjct: 367 ALGTPIVGDYKYGWFMHQRWKQMPRVDYEPMTRSPYKLRRPEGLEVQKGSVLSKVPLLHL 426

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+V+P+ AKFL   R+    + +       +PDLLRFVA MPSHMKISWN+MSSYLV
Sbjct: 427 HCREMVIPHFAKFL---RSSGEWHDEGTPWTSDKPDLLRFVAPMPSHMKISWNVMSSYLV 483


>ref|XP_010323966.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial isoform X2
            [Solanum lycopersicum]
          Length = 459

 Score =  345 bits (885), Expect(2) = e-173
 Identities = 185/296 (62%), Positives = 216/296 (72%), Gaps = 5/296 (1%)
 Frame = -1

Query: 1471 SRQILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPGHPL 1292
            SR +L   R +SR+          + +IRVSNN+ HLG  K+G KP QLLSLPPFPG PL
Sbjct: 8    SRCLLFLVRRFSRSVGHSAQAYRCEPVIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPL 67

Query: 1291 PGRKSAS-----AYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQ 1127
            PG+K A+     + HVTAISW+KYYFD+IP  VIQSHFNK LVQ+E  +   S    +GQ
Sbjct: 68   PGKKVATGPDQPSCHVTAISWIKYYFDEIPGSVIQSHFNKGLVQLELNELFTSK---EGQ 124

Query: 1126 PLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKD 947
               + KIKH+EV+EVGAR++VP+SVAE+RISKR+DVIPSGTL PNADEI YLQRLV YK 
Sbjct: 125  TRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYPNADEIAYLQRLVFYK- 183

Query: 946  SAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTE 767
                           GN+ VHNSMD      LSY+YDEGP+LVHRLDRESSGL LMGRTE
Sbjct: 184  ---------------GNLHVHNSMDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTE 228

Query: 766  ESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            ESIS+LH LFS+ K+ KS+SKAWNDAC  TYQRYWALVIG PK KEG+I APLTKV
Sbjct: 229  ESISHLHLLFSNTKRSKSLSKAWNDACGSTYQRYWALVIGSPKVKEGVISAPLTKV 284



 Score =  293 bits (750), Expect(2) = e-173
 Identities = 141/180 (78%), Positives = 155/180 (86%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+G+TERVMLA  S LEAS EA+TEYR+LGPMINGCSWIELRPHTSRKHQLRVHCAE
Sbjct: 284 VLLDDGRTERVMLAQQSGLEASDEAVTEYRLLGPMINGCSWIELRPHTSRKHQLRVHCAE 343

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H +WKQMPRVD EP TG+PY+++RPEGLDVQKGSVLSKVPLLHL
Sbjct: 344 ALGTPIVGDYKYGWFVHRKWKQMPRVDVEPITGKPYRLKRPEGLDVQKGSVLSKVPLLHL 403

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRELVLPNIAKF+ LH  K   N        S+PDLLRFVA MPS MKISW LMSS L+
Sbjct: 404 HCRELVLPNIAKFIELHSRKTRKNTD----YSSKPDLLRFVAPMPSPMKISWKLMSSCLI 459


>ref|XP_008807168.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudouridine synthase 3,
            mitochondrial [Phoenix dactylifera]
          Length = 483

 Score =  363 bits (931), Expect(2) = e-171
 Identities = 184/297 (61%), Positives = 225/297 (75%), Gaps = 9/297 (3%)
 Frame = -1

Query: 1462 ILLACRHYSRTRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPG---HPL 1292
            +L   RH SR  + PP PA A+ +IRVSNNVA LG PKEGPKP+QLLSLPP P    +PL
Sbjct: 13   LLRTVRHLSR--LAPPRPATAEPVIRVSNNVARLGEPKEGPKPRQLLSLPPSPXSHTNPL 70

Query: 1291 PGRKSASAY------HVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKG 1130
            PGRK   A        +TAI+W+K+YF DIPP VIQSHF K LV +E  +          
Sbjct: 71   PGRKRDPAADPSKPRRITAITWVKHYFADIPPEVIQSHFRKGLVHVESSNRGVPLEKGHH 130

Query: 1129 QPLSMIKIKHNEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYK 950
            Q   + ++KHN+V+EVG ++++PVSVAE++I+KR+D IP+ TL PNADEIEY++RLV YK
Sbjct: 131  QMHQLKRVKHNDVMEVGMKIHIPVSVAETKITKRYDTIPTATLHPNADEIEYIRRLVTYK 190

Query: 949  DSAILVLNKPPKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRT 770
            DSAI+VLNKPPK+PVKGN+PVHNSMD      LSY  ++GPKLVHRLDRESSGLLLMGRT
Sbjct: 191  DSAIIVLNKPPKVPVKGNLPVHNSMDVLAAAALSYGNEQGPKLVHRLDRESSGLLLMGRT 250

Query: 769  EESISYLHWLFSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            +ES + LHWLF+++   KS S+ WNDACE T QRYWALVIGCPKE+EGLI APL+KV
Sbjct: 251  KESFAQLHWLFTNINLAKSSSQTWNDACEATMQRYWALVIGCPKEREGLISAPLSKV 307



 Score =  270 bits (691), Expect(2) = e-171
 Identities = 129/180 (71%), Positives = 152/180 (84%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL++GKTERV+LA+ S ++ SQEA+TEYRV+GP INGCSW+ELRP T RKHQLRVHCAE
Sbjct: 307 VLLNDGKTERVILAHPSGIDGSQEAVTEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAE 366

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H RWKQMPRVD+EP T  PYK+RRPEGL+VQKGS LSKVPLLHL
Sbjct: 367 ALGTPIVGDYKYGWFMHQRWKQMPRVDYEPMTRAPYKLRRPEGLEVQKGSALSKVPLLHL 426

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+V+P+IAKFL    +    + +    +  +PDLLRFVA MPSHMKISWN+MSS LV
Sbjct: 427 HCREMVIPHIAKFL---SSSGEWHDEGTPWSSDKPDLLRFVAPMPSHMKISWNVMSSCLV 483


>ref|XP_009401551.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Musa
            acuminata subsp. malaccensis]
          Length = 481

 Score =  357 bits (915), Expect(2) = e-171
 Identities = 182/287 (63%), Positives = 223/287 (77%), Gaps = 9/287 (3%)
 Frame = -1

Query: 1432 TRIRPPSPAYAKAIIRVSNNVAHLGCPKEGPKPQQLLSLPPFPG---HPLPGRK-----S 1277
            +RI PPSPA A+ +IRVSNNVA LG PKEGPKP+QLLSLPPFP     PLPGRK     S
Sbjct: 21   SRIAPPSPATAEPVIRVSNNVARLGKPKEGPKPRQLLSLPPFPSTGTDPLPGRKKDPAAS 80

Query: 1276 ASAYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQPLSMIK-IKH 1100
                 VTAISW+K+YF DIPP VIQSHFNK LV +E   S +  ++ +   +  +K IKH
Sbjct: 81   GQPRRVTAISWVKHYFADIPPEVIQSHFNKGLVHVE--SSNHDFQTEENYLMHCLKKIKH 138

Query: 1099 NEVIEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAILVLNKP 920
            N ++E G ++++PVS AE++I KR+D IP+ TL PNADEIEY++RLV +KDSAI+VLNKP
Sbjct: 139  NHIMEPGMKIHLPVSAAETKIIKRYDTIPTATLHPNADEIEYIRRLVIHKDSAIIVLNKP 198

Query: 919  PKLPVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESISYLHWL 740
            PK+P+KGN+PVHNSMD      LSY  D+GPKLVHRLDRESSGLLL+GRT+ES++ LHWL
Sbjct: 199  PKVPMKGNLPVHNSMDILAAAALSYGSDQGPKLVHRLDRESSGLLLLGRTKESLTRLHWL 258

Query: 739  FSDVKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            F++V   KS S+ WN+ACE T QRYWALVIG PKE+EG+I APLTKV
Sbjct: 259  FTNVNLAKSSSEIWNNACEATTQRYWALVIGSPKEREGIISAPLTKV 305



 Score =  274 bits (701), Expect(2) = e-171
 Identities = 131/180 (72%), Positives = 154/180 (85%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLL+NGK ER++LA+ S ++ SQ+AITEYRV+GP INGCSW+ELRP T RKHQLRVHCAE
Sbjct: 305 VLLNNGKAERIILAHPSGIDGSQDAITEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAE 364

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H RWKQMPRVD+E  +G+PYK+RRPEGLDVQKGSVLSKVPLLHL
Sbjct: 365 ALGTPIVGDYKYGWFVHQRWKQMPRVDYETLSGKPYKLRRPEGLDVQKGSVLSKVPLLHL 424

Query: 237 HCRELVLPNIAKFLLLHRNKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSYLV 58
           HCRE+V+PNI+KF L    +  V   P   + S+PDLLR VA MPSHMKISWN+MSS+LV
Sbjct: 425 HCREMVIPNISKF-LGSSGEWLVECNPG--STSKPDLLRIVAPMPSHMKISWNVMSSFLV 481


>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
          Length = 509

 Score =  343 bits (881), Expect(2) = e-166
 Identities = 174/284 (61%), Positives = 214/284 (75%), Gaps = 6/284 (2%)
 Frame = -1

Query: 1432 TRIRPPSPAYAK-AIIRVS-NNVAHLGCPKEGPKPQQLLSLPPFPG----HPLPGRKSAS 1271
            +R+ PP+PA A   ++RV  +NVA LG PK GP+P+QLLSLPPFPG     PLPGRK+A+
Sbjct: 50   SRLAPPAPAEADPVVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAA 109

Query: 1270 AYHVTAISWLKYYFDDIPPPVIQSHFNKVLVQMECLDSTNSSRSHKGQPLSMIKIKHNEV 1091
               VTA+SW+K+Y  D+P  V+Q+HFNK LV  EC D   S  + K Q   + KIKHN+V
Sbjct: 110  PRRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDV 169

Query: 1090 IEVGARVYVPVSVAESRISKRFDVIPSGTLCPNADEIEYLQRLVKYKDSAILVLNKPPKL 911
            +E G R+++PVSVAE  I KR++ IP+ TL PN DEIEYL+RLV +KDSAILVLNKPPK+
Sbjct: 170  MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 229

Query: 910  PVKGNMPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESSGLLLMGRTEESISYLHWLFSD 731
            P+KGN+PVHNSMD      LSY  +EGPKLVHRLDRESSGLLL GRT+ES + LHWLF+ 
Sbjct: 230  PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 289

Query: 730  VKKGKSMSKAWNDACEETYQRYWALVIGCPKEKEGLICAPLTKV 599
            V   K+ S+ WN ACE   QRYWALVIG PKE+EG+I APL+KV
Sbjct: 290  VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKV 333



 Score =  270 bits (691), Expect(2) = e-166
 Identities = 127/182 (69%), Positives = 155/182 (85%), Gaps = 2/182 (1%)
 Frame = -2

Query: 597 VLLDNGKTERVMLANNSVLEASQEAITEYRVLGPMINGCSWIELRPHTSRKHQLRVHCAE 418
           VLLD+GK ERV+LA+ S ++ +QEA+T YRV+GP I+GCSWIELRP T RKHQLRVHCAE
Sbjct: 333 VLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAE 392

Query: 417 ALGTPIVGDYRYGWFIHNRWKQMPRVDFEPTTGEPYKMRRPEGLDVQKGSVLSKVPLLHL 238
           ALGTPIVGDY+YGWF+H RWKQ P+ DFEP TGEPYK+RRPEGL++QKGSVLSKVPLLHL
Sbjct: 393 ALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHL 452

Query: 237 HCRELVLPNIAKFLLLHR--NKNAVNYKPDLVNESRPDLLRFVAAMPSHMKISWNLMSSY 64
           HCRE+V+PNIAKFL  +   ++N   +     ++ +P+LLRF+A MP+HMKISWN+MSSY
Sbjct: 453 HCREMVIPNIAKFLSSNGEWHENGAPW-----SKEKPNLLRFIAPMPAHMKISWNIMSSY 507

Query: 63  LV 58
           LV
Sbjct: 508 LV 509