BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00027627
         (1789 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012078997.1| PREDICTED: uncharacterized protein LOC105639...   114   5e-32
ref|XP_007033139.1| Retrotransposon protein, putative [Theobroma...   110   3e-30
ref|XP_006436321.1| hypothetical protein CICLE_v10033628mg, part...   112   3e-27
ref|XP_006386829.1| hypothetical protein POPTR_0002s22700g [Popu...   125   8e-26
gb|KJB65800.1| hypothetical protein B456_010G1135001, partial [G...    94   1e-23
ref|XP_012477568.1| PREDICTED: uncharacterized protein LOC105793...    92   4e-23
ref|XP_007010461.1| Retrotransposon protein, putative [Theobroma...   115   9e-23
ref|XP_006432547.1| hypothetical protein CICLE_v10003434mg, part...   115   1e-22
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...    93   2e-22
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]      93   2e-22
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    84   3e-22
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-...    94   3e-22
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...    72   4e-22
dbj|BAA22288.1| polyprotein [Oryza australiensis]                      91   4e-22
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...    92   6e-22
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]         91   9e-22
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    92   4e-21
ref|XP_009587096.1| PREDICTED: uncharacterized protein LOC104084...    70   5e-21
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...    92   3e-20
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]      92   3e-20

>ref|XP_012078997.1| PREDICTED: uncharacterized protein LOC105639525 [Jatropha curcas]
           gi|802640779|ref|XP_012078998.1| PREDICTED:
           uncharacterized protein LOC105639526 [Jatropha curcas]
          Length = 212

 Score =  114 bits (284), Expect(2) = 5e-32
 Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
 Frame = -1

Query: 976 ERAGLQEHSDNSNTATYDACS-MSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSK 800
           ER     H+D+   AT    + M+ EL+KQH+ +D+   I H +EL D Q R+++YETSK
Sbjct: 57  ERNNFIRHTDDDGQATCVMLARMNYELQKQHENMDSRINILHLRELFDSQGRSERYETSK 116

Query: 799 RL*RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNM 620
            L    M + SS+S HV KM  YIEKL Q    MD EL +DLV+QSLP ++S FI++FNM
Sbjct: 117 ELFHCKMAEGSSVSVHVFKMTGYIEKLGQLGIAMDYELIIDLVLQSLPPSYSHFILSFNM 176

Query: 619 NKI 611
           NK+
Sbjct: 177 NKL 179



 Score = 53.9 bits (128), Expect(2) = 5e-32
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = -3

Query: 1148 MSNHISFRGILEANKHIGPNFLDWHRNLRIVLKHEK 1041
            MSN++  R ILEANK   PNF+DW+RN+RIVLK EK
Sbjct: 1    MSNNLCLRSILEANKLTRPNFIDWYRNVRIVLKQEK 36


>ref|XP_007033139.1| Retrotransposon protein, putative [Theobroma cacao]
           gi|508712168|gb|EOY04065.1| Retrotransposon protein,
           putative [Theobroma cacao]
          Length = 289

 Score =  110 bits (276), Expect(2) = 3e-30
 Identities = 58/122 (47%), Positives = 85/122 (69%), Gaps = 4/122 (3%)
 Frame = -1

Query: 961 QEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL 794
           Q H D+ + A   AC    SM+LEL+KQ + +D  + I H +EL D++ RT++YE SK L
Sbjct: 62  QRHKDDDDQA---ACVMLASMTLELQKQDEHMDVQSMILHLRELFDKEGRTERYEISKEL 118

Query: 793 *RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNK 614
            R  M + SS+  HVLKMI  IE+L Q    M +ELS++LV+QSLP++FSQF++NF+MN+
Sbjct: 119 FRCKMAEGSSVKPHVLKMIGPIERLGQLGLAMYHELSINLVLQSLPDSFSQFVLNFHMNR 178

Query: 613 IQ 608
           ++
Sbjct: 179 LE 180



 Score = 50.8 bits (120), Expect(2) = 3e-30
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -3

Query: 1148 MSNHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKE 1038
            M+N++  R IL+ANK IGPNFLD  RNL+IVLK EK+
Sbjct: 1    MANNLLLRSILDANKLIGPNFLDSFRNLKIVLKQEKK 37


>ref|XP_006436321.1| hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
           gi|557538517|gb|ESR49561.1| hypothetical protein
           CICLE_v10033628mg, partial [Citrus clementina]
          Length = 263

 Score =  112 bits (279), Expect(2) = 3e-27
 Identities = 62/125 (49%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
 Frame = -1

Query: 976 ERAGLQEHSDNSNTA-TYDACSMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSK 800
           ER   Q+  D+  +A +Y   SMS EL++QH+ +           L  EQSRT +YE SK
Sbjct: 59  ERVTYQKWQDDDLSAKSYILASMSNELQRQHENMP---------NLYSEQSRTVRYEISK 109

Query: 799 RL*RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNM 620
           +L R  M +  S++ HVLKMIDYIE+L   +F+MD EL++DL++QSLP++FSQFIMNFNM
Sbjct: 110 KLFRMRMTE-GSVNEHVLKMIDYIEQLEALNFSMDGELAIDLILQSLPDSFSQFIMNFNM 168

Query: 619 NKIQC 605
           NK++C
Sbjct: 169 NKMEC 173



 Score = 39.7 bits (91), Expect(2) = 3e-27
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = -3

Query: 1151 IMSNHISFRGILEANKHIGPNFLDWHRNLRIVLKHEK 1041
            IM+N ++   ILE  +  GPN++DW RNLRI+L +EK
Sbjct: 4    IMNNPLA--RILENYRLTGPNYVDWFRNLRIILNYEK 38


>ref|XP_006386829.1| hypothetical protein POPTR_0002s22700g [Populus trichocarpa]
           gi|550345621|gb|ERP64626.1| hypothetical protein
           POPTR_0002s22700g [Populus trichocarpa]
          Length = 171

 Score =  125 bits (315), Expect = 8e-26
 Identities = 63/113 (55%), Positives = 82/113 (72%)
 Frame = -1

Query: 949 DNSNTATYDACSMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL*RGLMVKR 770
           D+  TA      +S ++++QH+ ++AYT I H KEL DE SRT +Y+TSK L R  M K 
Sbjct: 40  DDEQTACVMLAIISYKIQRQHENMNAYTIIMHLKELFDETSRTNRYQTSKELFRCKMTKG 99

Query: 769 SSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNKI 611
           SS++ HVLKM  YIEKL Q  F MD +LSV+LV+QSLP NFSQFIMN++MNK+
Sbjct: 100 SSMNTHVLKMNGYIEKLEQLGFVMDRKLSVELVLQSLPQNFSQFIMNYHMNKL 152


>gb|KJB65800.1| hypothetical protein B456_010G1135001, partial [Gossypium
           raimondii]
          Length = 189

 Score = 94.0 bits (232), Expect(2) = 1e-23
 Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
 Frame = -1

Query: 976 ERAGLQEHSDNS-NTATYDACSMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSK 800
           +R   ++H D+  +       +M+ EL+KQH+ + AY  I H KE +  Q+R ++++ SK
Sbjct: 60  DRDAYRKHFDDMVDVGCLMLATMNPELQKQHEDMVAYEMIEHLKE-HQGQARQERFDISK 118

Query: 799 RL*RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNM 620
            L +  + + S +  HVLKMI YIE L++  F +  EL+ D+V+QSLP+++SQF +NFNM
Sbjct: 119 ALFQCKLAEGSPVGPHVLKMIGYIESLSKLGFPLSQELATDVVLQSLPDSYSQFFLNFNM 178

Query: 619 NKI 611
           N+I
Sbjct: 179 NEI 181



 Score = 45.8 bits (107), Expect(2) = 1e-23
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = -3

Query: 1145 SNHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKE 1038
            +N +S R +LE +K  G NFLDW RNLRIVLK E++
Sbjct: 5    TNTLSLRSVLEKDKLNGLNFLDWFRNLRIVLKQERK 40


>ref|XP_012477568.1| PREDICTED: uncharacterized protein LOC105793188 [Gossypium
           raimondii]
          Length = 203

 Score = 92.0 bits (227), Expect(2) = 4e-23
 Identities = 46/123 (37%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
 Frame = -1

Query: 976 ERAGLQEHSDNS-NTATYDACSMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSK 800
           +R   ++H D+  +       +M+ EL+KQH+ + AY  I H KEL   Q+  ++++ SK
Sbjct: 60  DRDAYKKHLDDMVDVGCLMLATMNPELQKQHEDMVAYEMIEHLKELYQGQAWQERFDISK 119

Query: 799 RL*RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNM 620
            L +  + + S +  HV KMI YIE L++  F +  EL+ ++++QSLP+++SQF++NFNM
Sbjct: 120 ALFQCKLAEGSPVGPHVHKMIGYIESLSKLGFQLSQELATNVILQSLPDSYSQFVLNFNM 179

Query: 619 NKI 611
           N+I
Sbjct: 180 NEI 182



 Score = 45.8 bits (107), Expect(2) = 4e-23
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = -3

Query: 1145 SNHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKE 1038
            +N +S R +LE +K  G NFLDW RNLRIVLK E++
Sbjct: 5    TNTLSLRSVLEKDKLNGLNFLDWFRNLRIVLKQERK 40


>ref|XP_007010461.1| Retrotransposon protein, putative [Theobroma cacao]
           gi|508727374|gb|EOY19271.1| Retrotransposon protein,
           putative [Theobroma cacao]
          Length = 277

 Score =  115 bits (289), Expect = 9e-23
 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%)
 Frame = -1

Query: 976 ERAGLQEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYE 809
           ++   Q H D+ + A   AC    SM+LEL+KQH+ +D  + I H +EL D + R ++YE
Sbjct: 45  DKEAYQCHKDDDDQA---ACMMLASMTLELQKQHEHMDVQSMILHLRELFDREGRIERYE 101

Query: 808 TSKRL*RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMN 629
            SK L R  M + SS+  HVLKMI  IE+L Q    MD+ELS+DLV+QSLP++FSQF++N
Sbjct: 102 ISKELFRCKMAEGSSVRPHVLKMIGLIERLRQLGLAMDHELSIDLVLQSLPDSFSQFMLN 161

Query: 628 FNMNKIQ 608
           F+MN+++
Sbjct: 162 FHMNRLE 168


>ref|XP_006432547.1| hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
           gi|557534669|gb|ESR45787.1| hypothetical protein
           CICLE_v10003434mg, partial [Citrus clementina]
          Length = 218

 Score =  115 bits (288), Expect = 1e-22
 Identities = 59/116 (50%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
 Frame = -1

Query: 949 DNSNTATYDACSMSLELEKQHKGL-DAYTKIYHFKELNDEQSRTKQYETSKRL*RGLMVK 773
           D+ +  +Y   SMS EL++QH+ + +A + I H +EL  EQS+T +YE S +L    M +
Sbjct: 41  DDLSAKSYILASMSNELQRQHENMPNASSMILHLQELYGEQSKTVRYEISNKLFIMRMTE 100

Query: 772 RSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNKIQC 605
             S++ HVLKMIDYIE+L   +F+MD EL++DL++QSLP++FSQFIMNFNMNK++C
Sbjct: 101 -GSVNEHVLKMIDYIEQLEALNFSMDGELAIDLILQSLPDSFSQFIMNFNMNKMEC 155


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score = 92.8 bits (229), Expect(2) = 2e-22
 Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
 Frame = -1

Query: 961 QEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL 794
           +EH    N     +C    +MS EL++Q++ LDA+T I   + + ++Q+R +++ TSK L
Sbjct: 130 REHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSL 189

Query: 793 *RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNK 614
               + + + +S HV+KMI Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN 
Sbjct: 190 FACRLAEGNLVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNN 249

Query: 613 I 611
           +
Sbjct: 250 L 250



 Score = 42.7 bits (99), Expect(2) = 2e-22
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = -3

Query: 1142 NHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            ++ + R ILE  K  G NF+DW+RNLRIVL+ E ++
Sbjct: 74   SNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKE 109



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           GLVHTDV G MS  A+GGF +FI FT + SRYG++YLM  KSE+ EKF++F+ EV+
Sbjct: 462 GLVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQ 517



 Score = 53.1 bits (126), Expect(2) = 1e-06
 Identities = 29/66 (43%), Positives = 40/66 (60%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KRI KLH+D  L S  +ESF  CESC LGK+T   F+G+ +  +++LG    L++ D C 
Sbjct: 415 KRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLG----LVHTDVCG 470

Query: 132 KMLKVA 115
            M   A
Sbjct: 471 PMSSTA 476



 Score = 28.9 bits (63), Expect(2) = 1e-06
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 399 LNPTFIWHCCLGHINE 414


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score = 92.8 bits (229), Expect(2) = 2e-22
 Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
 Frame = -1

Query: 961 QEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL 794
           +EH    N     +C    +MS EL++Q++ LDA+T I   + + ++Q+R +++ TSK L
Sbjct: 63  REHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSL 122

Query: 793 *RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNK 614
               + + + +S HV+KMI Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN 
Sbjct: 123 FACRLAEGNLVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNN 182

Query: 613 I 611
           +
Sbjct: 183 L 183



 Score = 42.7 bits (99), Expect(2) = 2e-22
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = -3

Query: 1142 NHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            ++ + R ILE  K  G NF+DW+RNLRIVL+ E ++
Sbjct: 7    SNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKE 42



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           GLVHTDV G MS  A+GGF +FI FT + SRYG++YLM  KSE+ EKF++F+ EV+
Sbjct: 375 GLVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQ 430



 Score = 53.1 bits (126), Expect(2) = 1e-06
 Identities = 29/66 (43%), Positives = 40/66 (60%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KRI KLH+D  L S  +ESF  CESC LGK+T   F+G+ +  +++LG    L++ D C 
Sbjct: 328 KRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLG----LVHTDVCG 383

Query: 132 KMLKVA 115
            M   A
Sbjct: 384 PMSSTA 389



 Score = 28.9 bits (63), Expect(2) = 1e-06
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 312 LNPTFIWHCCLGHINE 327


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 76.3 bits (186), Expect(3) = 3e-22
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = -1

Query: 166 LVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           L+HTDV G MS  A+GGF +FI FT D SRYG+IYLM  KSE+ EKFK+F+ EV+
Sbjct: 586 LIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQ 640



 Score = 52.4 bits (124), Expect(3) = 3e-22
 Identities = 24/51 (47%), Positives = 36/51 (70%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLY 160
           KR+ KLH D  L+S   ESF+ CESC LGK+T T F+G+ +  +D+L +++
Sbjct: 538 KRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALIH 588



 Score = 26.2 bits (56), Expect(3) = 3e-22
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 389 VEPQGIKEIKLKYSYLWHCIFGHINE 312
           +  + ++   +  +++WHC  GHI+E
Sbjct: 512 INAKRLRPNNMNSTFIWHCRLGHISE 537



 Score = 84.3 bits (207), Expect(2) = 7e-19
 Identities = 38/100 (38%), Positives = 66/100 (66%)
 Frame = -1

Query: 916 SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL*RGLMVKRSSISAHVLKMI 737
           +M+ +L+KQ + ++AY  I   K + + Q+RTK++E SK L    + + S +S H++KM+
Sbjct: 169 AMNSDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSCKLAEGSPVSPHMIKMV 228

Query: 736 DYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMN 617
            Y + L +  F +  EL+ DL++ SLP ++ QFI+NF+MN
Sbjct: 229 GYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMN 268



 Score = 39.3 bits (90), Expect(2) = 7e-19
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -3

Query: 1151 IMSNHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            + ++  + R IL+  K  G NF DW RNLRIVL+ +K++
Sbjct: 91   VPTSSFALRSILKKEKLNGTNFADWSRNLRIVLRQDKKE 129


>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550176|gb|ABA92973.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 591

 Score = 94.0 bits (232), Expect(2) = 3e-22
 Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
 Frame = -1

Query: 961 QEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL 794
           +EH    N     +C    +MSL+L++Q++ LDA+T I   + + ++Q+R +++ TSK L
Sbjct: 85  REHERRCNEYLDISCLMLATMSLKLQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSL 144

Query: 793 *RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNK 614
               + + + +S HV+KMI Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN 
Sbjct: 145 FACRLAEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNN 204

Query: 613 I 611
           +
Sbjct: 205 L 205



 Score = 40.8 bits (94), Expect(2) = 3e-22
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -3

Query: 1142 NHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            ++ + R ILE  K  G NF+DW+ NLRIVL+ E ++
Sbjct: 29   SNFNLRSILEKEKLTGTNFMDWYHNLRIVLRQEHKE 64



 Score = 52.4 bits (124), Expect(3) = 1e-14
 Identities = 23/51 (45%), Positives = 37/51 (72%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLY 160
           KR+ KLH+D  L S  +ESF+ CESC LGK+T   F+G+ +  +++LG+++
Sbjct: 337 KRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQNERASELLGLVH 387



 Score = 48.5 bits (114), Expect(3) = 1e-14
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYG 71
           GLVHT V G MS  AKGGF +FI FT D SRYG
Sbjct: 384 GLVHTHVCGSMSSTAKGGFGYFITFTDDLSRYG 416



 Score = 28.1 bits (61), Expect(3) = 1e-14
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 321 LNPTFIWHCRLGHINE 336


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score = 71.6 bits (174), Expect(3) = 4e-22
 Identities = 31/56 (55%), Positives = 43/56 (76%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           GL+HTDV G MS  A+G + +FI FT D SRYG++YLM+ KS++ E FK+F+ EV+
Sbjct: 141 GLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQ 196



 Score = 53.1 bits (126), Expect(3) = 4e-22
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLY 160
           K I KLH D  L+S  YES++ CESC LGK+T   F+G  +  +D+LG+++
Sbjct: 94  KHIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIH 144



 Score = 29.6 bits (65), Expect(3) = 4e-22
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 389 VEPQGIKEIKLKYSYLWHCIFGHINE 312
           +  +  K   L  ++LWHC  GHINE
Sbjct: 68  IRTKKFKSNDLNPTFLWHCRLGHINE 93


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 90.5 bits (223), Expect(2) = 4e-22
 Identities = 44/122 (36%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
 Frame = -1

Query: 973 RAGLQEHSDNS-NTATYDACSMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKR 797
           R G ++H++++ + +     +MS EL+KQ++  DA+T I   + + + Q+R +++ TSK 
Sbjct: 63  RRGFEKHTNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKS 122

Query: 796 L*RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMN 617
           L    +V+ + +S HV+KMI YIE L +  F +  EL+ D+++QSLP +F  FI+N++MN
Sbjct: 123 LFACRLVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMN 182

Query: 616 KI 611
            +
Sbjct: 183 NM 184



 Score = 43.9 bits (102), Expect(2) = 4e-22
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = -3

Query: 1133 SFRGILEANKHIGPNFLDWHRNLRIVLKHEKEKLDMSI 1020
            + R ILE  K  G NF+DW+RNLRIVLK E+++  + +
Sbjct: 11   NLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEV 48



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = -1

Query: 166 LVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           LVHTDV G MS  A+GG+ +FI FT D SRYG+IYLM  KSE+ EKFK+F+ EV+
Sbjct: 498 LVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQ 552



 Score = 52.8 bits (125), Expect(2) = 1e-05
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KR+ KLHKD  L S  +ESF+ CESC LGK+T   F+G  +  +D+L     L++ D C 
Sbjct: 450 KRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLA----LVHTDVCG 505

Query: 132 KMLKVA 115
            M   A
Sbjct: 506 PMSSTA 511



 Score = 26.2 bits (56), Expect(2) = 1e-05
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 350 SYLWHCIFGHINE 312
           +++WHC  GHIN+
Sbjct: 437 TFIWHCRLGHINK 449


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 829

 Score = 91.7 bits (226), Expect(2) = 6e-22
 Identities = 46/121 (38%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
 Frame = -1

Query: 961 QEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL 794
           +EH    N     +C    +MS EL++Q++ LDA+T I   + + ++Q+R +++ TSK L
Sbjct: 142 REHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSL 201

Query: 793 *RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNK 614
               + + + +S HV+K+I Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN 
Sbjct: 202 FACRLAEGNPVSPHVIKIIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNN 261

Query: 613 I 611
           +
Sbjct: 262 L 262



 Score = 42.4 bits (98), Expect(2) = 6e-22
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = -3

Query: 1133 SFRGILEANKHIGPNFLDWHRNLRIVLKHEKEKLDMSIS 1017
            + R ILE  K  G NF+DW+RNLRIVL+ E ++  ++ S
Sbjct: 89   NLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTES 127



 Score = 77.8 bits (190), Expect = 3e-11
 Identities = 36/54 (66%), Positives = 42/54 (77%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQE 8
           GLVHTDV G MS  A+GGF +FI FT D SRYG++YLM  KSE+ EKFKKF+ E
Sbjct: 441 GLVHTDVCGPMSSTARGGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKKFQNE 494



 Score = 53.1 bits (126), Expect(2) = 2e-06
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KR+ KLH+D  L S  +ESF+ CESC LGK+T   F+G+ +  +++LG    L++ D C 
Sbjct: 394 KRMKKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLG----LVHTDVCG 449

Query: 132 KMLKVA 115
            M   A
Sbjct: 450 PMSSTA 455



 Score = 28.1 bits (61), Expect(2) = 2e-06
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 378 LNPTFIWHCRLGHINE 393


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score = 90.5 bits (223), Expect(2) = 9e-22
 Identities = 43/102 (42%), Positives = 69/102 (67%)
 Frame = -1

Query: 916 SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL*RGLMVKRSSISAHVLKMI 737
           +MS EL+ Q++ LDA+T I   + + ++Q+R +++ TSK L    + + + +S HV+KMI
Sbjct: 159 TMSPELQSQYEALDAHTIITGLRNMFEDQARAERFNTSKFLFAYRLAQGNPVSPHVIKMI 218

Query: 736 DYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNKI 611
            Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN +
Sbjct: 219 GYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNL 260



 Score = 42.7 bits (99), Expect(2) = 9e-22
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = -3

Query: 1142 NHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            ++ + R ILE  K  G NF+DW+RNLRIVL+ E ++
Sbjct: 84   SNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKE 119



 Score = 73.9 bits (180), Expect = 4e-10
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = -1

Query: 166 LVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           LVHTDV G MS  A+ GF +FI FT D SRYG++YLM  KSE+ EKFK+F+ EV+
Sbjct: 493 LVHTDVCGPMSSTARSGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQ 547



 Score = 50.8 bits (120), Expect(2) = 1e-05
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KR+ KLH+D  L S  +ESF+ CESC LGK+T   F+G+ +  +++L     L++ D C 
Sbjct: 445 KRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLA----LVHTDVCG 500

Query: 132 KMLKVA 115
            M   A
Sbjct: 501 PMSSTA 506



 Score = 28.1 bits (61), Expect(2) = 1e-05
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 429 LNPTFIWHCRLGHINE 444


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 91.7 bits (226), Expect(2) = 4e-21
 Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
 Frame = -1

Query: 961 QEHSDNSNTATYDAC----SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL 794
           +EH    N     +C    +MS EL++Q++ LDA+T I   + + ++Q+R K++ TSK L
Sbjct: 63  REHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSL 122

Query: 793 *RGLMVKRSSISAHVLKMIDYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNK 614
               + + + +S HV+KMI Y E L +  F +  EL+ DL++QSLP +F  FI+NFNMN 
Sbjct: 123 FACRLAEGNPVSPHVIKMIGYNETLEKLGFPLSQELATDLILQSLPPSFEPFILNFNMNN 182

Query: 613 I 611
           +
Sbjct: 183 M 183



 Score = 39.7 bits (91), Expect(2) = 4e-21
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -3

Query: 1133 SFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            + R ILE  K  G N +DW+RNLRIVL+ E ++
Sbjct: 10   NLRSILEKEKLTGTNIMDWYRNLRIVLRQEHKE 42



 Score = 73.9 bits (180), Expect = 4e-10
 Identities = 34/55 (61%), Positives = 41/55 (74%)
 Frame = -1

Query: 166 LVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           LVHTDV G MS  A+GGF +F  FT D SRYG++YLM  KSE+ EKFK+F  EV+
Sbjct: 474 LVHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQ 528


>ref|XP_009587096.1| PREDICTED: uncharacterized protein LOC104084843 [Nicotiana
           tomentosiformis]
          Length = 248

 Score = 70.1 bits (170), Expect(3) = 5e-21
 Identities = 30/56 (53%), Positives = 41/56 (73%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQEVE 2
           GL+H D+Y  M    +GG+S+ IIFT D SRYGF+YLM+ KSE+ + FK+ + EVE
Sbjct: 189 GLIHKDIYRPMKIQVRGGYSYIIIFTDDMSRYGFVYLMKHKSESFKMFKRLRSEVE 244



 Score = 52.4 bits (124), Expect(3) = 5e-21
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMY 148
           KRI KL+K+  LD   +ES+  CESC  GK+T +LF G G+  +++LG+++  +Y
Sbjct: 142 KRINKLYKEGNLDKYDFESYPTCESCLKGKMTKSLFIGSGERASELLGLIHKDIY 196



 Score = 28.5 bits (62), Expect(3) = 5e-21
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 371 KEIKLKYSYLWHCIFGHINE 312
           ++ ++ ++YLWHC  GHI E
Sbjct: 122 RDDQVNHTYLWHCRLGHIIE 141


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score = 92.0 bits (227), Expect(2) = 3e-20
 Identities = 43/102 (42%), Positives = 70/102 (68%)
 Frame = -1

Query: 916 SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL*RGLMVKRSSISAHVLKMI 737
           +MS EL++Q++ LDA+T I   + + ++Q+R +++ TSK L    + + + +S HV+KMI
Sbjct: 174 TMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPHVIKMI 233

Query: 736 DYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNKI 611
            Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN +
Sbjct: 234 GYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNL 275



 Score = 36.2 bits (82), Expect(2) = 3e-20
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -3

Query: 1142 NHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            ++ + R ILE  K    N +DW+RNLRIVL+ E ++
Sbjct: 99   SNFNLRYILEKEKLTRTNIMDWYRNLRIVLRQEHKE 134



 Score = 74.7 bits (182), Expect = 2e-10
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQE 8
           GLVHTDV G MS  A+GGF +FI FT D SR G++YLM  KSE++EKFKKF+ E
Sbjct: 589 GLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNE 642



 Score = 52.0 bits (123), Expect(2) = 5e-06
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KR+ KLH+D  L S  +ESF+ CESC LGK+T   F+G+    +++LG    L++ D C 
Sbjct: 542 KRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLG----LVHTDVCG 597

Query: 132 KMLKVA 115
            M   A
Sbjct: 598 PMSSTA 603



 Score = 28.1 bits (61), Expect(2) = 5e-06
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 526 LNPTFIWHCRLGHINE 541


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score = 92.0 bits (227), Expect(2) = 3e-20
 Identities = 43/102 (42%), Positives = 70/102 (68%)
 Frame = -1

Query: 916 SMSLELEKQHKGLDAYTKIYHFKELNDEQSRTKQYETSKRL*RGLMVKRSSISAHVLKMI 737
           +MS EL++Q++ LDA+T I   + + ++Q+R +++ TSK L    + + + +S HV+KMI
Sbjct: 174 TMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPHVIKMI 233

Query: 736 DYIEKLNQFSFTMDNELSVDLVIQSLPNNFSQFIMNFNMNKI 611
            Y E L++  F +  EL+ DL++QSLP +F  FIMNFNMN +
Sbjct: 234 GYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNL 275



 Score = 36.2 bits (82), Expect(2) = 3e-20
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -3

Query: 1142 NHISFRGILEANKHIGPNFLDWHRNLRIVLKHEKEK 1035
            ++ + R ILE  K    N +DW+RNLRIVL+ E ++
Sbjct: 99   SNFNLRYILEKEKLTRTNIMDWYRNLRIVLRQEHKE 134



 Score = 74.7 bits (182), Expect = 2e-10
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = -1

Query: 169 GLVHTDVYGQMSKDAKGGFSHFIIFTYDRSRYGFIYLMEFKSEALEKFKKFKQE 8
           GLVHTDV G MS  A+GGF +FI FT D SR G++YLM  KSE++EKFKKF+ E
Sbjct: 589 GLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNE 642



 Score = 52.0 bits (123), Expect(2) = 5e-06
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = -2

Query: 312 KRITKLHKDEYLDSNYYESFDKCESCPLGKIT*TLFSGKGDTVADILGVLYILMYMDKCL 133
           KR+ KLH+D  L S  +ESF+ CESC LGK+T   F+G+    +++LG    L++ D C 
Sbjct: 542 KRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLG----LVHTDVCG 597

Query: 132 KMLKVA 115
            M   A
Sbjct: 598 PMSSTA 603



 Score = 28.1 bits (61), Expect(2) = 5e-06
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 LKYSYLWHCIFGHINE 312
           L  +++WHC  GHINE
Sbjct: 526 LNPTFIWHCRLGHINE 541