BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00018424
         (2651 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]   422   e-170
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [...   512   e-149
ref|YP_009110633.1| RNA polymerase alpha subunit (chloroplast) [...   510   e-148
ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum ind...   490   e-143
gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast...   489   e-142
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [...   489   e-142
ref|YP_009117253.1| RNA polymerase alpha subunit (chloroplast) [...   487   e-142
ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia t...   484   e-141
ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]...   486   e-141
ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [...   483   e-140
ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta...   481   e-139
gb|ADD31214.1| RNA polymerase alpha subunit protein (chloroplast...   480   e-139
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast...   483   e-139
gb|ADD31215.1| RNA polymerase alpha subunit protein (chloroplast...   481   e-139
gb|ADD31212.1| RNA polymerase alpha subunit protein (chloroplast...   478   e-139
sp|Q06RA0.2|RPOA_JASNU RecName: Full=DNA-directed RNA polymerase...   486   e-139
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [...   481   e-138
ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [...   481   e-138
ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [...   482   e-138
ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [...   482   e-138

>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
          Length = 466

 Score =  422 bits (1086), Expect(3) = e-170
 Identities = 212/251 (84%), Positives = 222/251 (88%)
 Frame = -1

Query: 863 REKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 684
           R+KV VS RTLQWKCVESR DSKRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195

Query: 683 TRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDII 504
           TR K E +PHEYSTI GIQES+HEILMNLKEIVL+SNLYGT DASIC +GPGYVTAQDII
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255

Query: 503 LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVRNA 324
           LPP VEIVDNTQHIA+LTEPI+LCI LQIER RGY IK  +N QDGSY IDAVFMPVRNA
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315

Query: 323 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDN 144
           NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEENL  E+N
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 375

Query: 143 QHTVPLSPLTF 111
           QH V L   TF
Sbjct: 376 QHKVTLPLFTF 386



 Score =  182 bits (463), Expect(3) = e-170
 Identities = 90/108 (83%), Positives = 97/108 (89%)
 Frame = -2

Query: 1291 RRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFXXXXXXXXAIRT 1112
            R+IPKGVI+VQASFNNTIVTVTDVRGRV+SWSSAG+CGFKGTRRGTPF        AIRT
Sbjct: 23   RKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIRT 82

Query: 1111 VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 968
            VVDQGMQRA V+IKGPGLGRDAALRAI RSGILL F+RDVTP+PHNGC
Sbjct: 83   VVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGC 130



 Score = 45.1 bits (105), Expect(3) = e-170
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQ ELSPR+YNCLK+S
Sbjct: 403 ALKSIFIDQLELSPRIYNCLKKS 425


>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
           gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
           (chloroplast) [Olea europaea]
           gi|291059284|gb|ADD72120.1| RNA polymerase alpha subunit
           [Olea europaea] gi|328795464|emb|CBR30346.1| RNA
           polymerase alpha subunit [Olea europaea subsp. europaea]
           gi|334084432|emb|CBR23861.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334084518|emb|CBR24655.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084604|emb|CBR30439.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084690|emb|CBS29383.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334084895|emb|CBS29273.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|334084981|emb|CBJ04329.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334085067|emb|CBR23770.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|510934435|emb|CCQ09133.1| RNA polymerase alpha
           subunit (chloroplast) [Olea europaea subsp. europaea]
          Length = 337

 Score =  512 bits (1318), Expect(2) = e-149
 Identities = 250/253 (98%), Positives = 252/253 (99%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPIDLCIGLQI+RNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSPLTF
Sbjct: 241 DNQHTVPLSPLTF 253



 Score = 47.4 bits (111), Expect(2) = e-149
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSE SPRVYNCLKRS
Sbjct: 268 ALKSIFIDQSEFSPRVYNCLKRS 290


>ref|YP_009110633.1| RNA polymerase alpha subunit (chloroplast) [Hesperelaea palmeri]
           gi|725798317|emb|CED79793.1| RNA polymerase alpha
           subunit (chloroplast) [Hesperelaea palmeri]
          Length = 337

 Score =  510 bits (1314), Expect(2) = e-148
 Identities = 249/253 (98%), Positives = 251/253 (99%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENVPHEYSTIAGIQESVHEI MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPIDLCIGLQI+RNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSPLTF
Sbjct: 241 DNQHTVPLSPLTF 253



 Score = 47.4 bits (111), Expect(2) = e-148
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSE SPRVYNCLKRS
Sbjct: 268 ALKSIFIDQSEFSPRVYNCLKRS 290


>ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum indicum]
           gi|347448327|gb|AEO92738.1| RNA polymerase alpha subunit
           (chloroplast) [Sesamum indicum]
           gi|496538633|gb|AGL45368.1| RpoA (chloroplast) [Sesamum
           indicum]
          Length = 337

 Score =  490 bits (1261), Expect(2) = e-143
 Identities = 240/253 (94%), Positives = 243/253 (96%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENVPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICV+GPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI  CIGL+IERNRGYLIKMP NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIHFCIGLEIERNRGYLIKMPQNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQ TVPLSP TF
Sbjct: 241 DNQRTVPLSPFTF 253



 Score = 48.9 bits (115), Expect(2) = e-143
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELSPRVYNCLKRS
Sbjct: 268 ALKSIFIDQSELSPRVYNCLKRS 290


>gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast) [Antirrhinum
           majus]
          Length = 336

 Score =  489 bits (1258), Expect(2) = e-142
 Identities = 236/253 (93%), Positives = 244/253 (96%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K EN+PHEYSTI GIQESVHEILMNLKEIVLR+NLYGTCDASIC RGPGYVTAQD
Sbjct: 61  CITRVKSENIPHEYSTITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI+ CIGL+IERNRGYLIKMPHNFQDGSY IDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPL+
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLD 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHT+PLSP +F
Sbjct: 241 DNQHTIPLSPFSF 253



 Score = 47.4 bits (111), Expect(2) = e-142
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELSPR YNCLKRS
Sbjct: 267 ALKSIFIDQSELSPRAYNCLKRS 289


>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
           philippensis] gi|557136896|emb|CDI43950.1| RNA
           polymerase alpha subunit (chloroplast) [Lindenbergia
           philippensis]
          Length = 336

 Score =  489 bits (1258), Expect(2) = e-142
 Identities = 239/253 (94%), Positives = 243/253 (96%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREK+TVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1   MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENV HEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICV GPGYVTAQD
Sbjct: 61  CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVMGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NMNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQ TVPLSP TF
Sbjct: 241 DNQRTVPLSPFTF 253



 Score = 47.4 bits (111), Expect(2) = e-142
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -3

Query: 66  LKSIFIDQSELSPRVYNCLKRS 1
           LKSIFIDQSELSPRVYNCLKRS
Sbjct: 268 LKSIFIDQSELSPRVYNCLKRS 289


>ref|YP_009117253.1| RNA polymerase alpha subunit (chloroplast) [Premna microphylla]
           gi|748013937|gb|AJE28407.1| RNA polymerase alpha subunit
           (chloroplast) [Premna microphylla]
          Length = 336

 Score =  487 bits (1253), Expect(2) = e-142
 Identities = 236/253 (93%), Positives = 243/253 (96%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVT STRTLQWKCVESR D KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTASTRTLQWKCVESRTDGKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           C+TR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CLTRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI LCIGL+IERNRGYL+KMP+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPISLCIGLEIERNRGYLVKMPNNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP  F
Sbjct: 241 DNQHTVPLSPFPF 253



 Score = 48.9 bits (115), Expect(2) = e-142
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELSPRVYNCLKRS
Sbjct: 268 ALKSIFIDQSELSPRVYNCLKRS 290


>ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia takesimensis]
           gi|744673771|gb|AJD00756.1| RNA polymerase alpha subunit
           [Scrophularia takesimensis]
          Length = 335

 Score =  484 bits (1247), Expect(2) = e-141
 Identities = 238/253 (94%), Positives = 241/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENV HEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGY  KMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYFFKMPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGN NEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NVNHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTV LSP  F
Sbjct: 241 DNQHTVSLSPFYF 253



 Score = 48.9 bits (115), Expect(2) = e-141
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELSPRVYNCLKRS
Sbjct: 266 ALKSIFIDQSELSPRVYNCLKRS 288


>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
           gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
           [Ajuga reptans]
          Length = 337

 Score =  486 bits (1251), Expect(2) = e-141
 Identities = 238/253 (94%), Positives = 243/253 (96%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGT DASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTFDASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGYLIKMPH FQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLKIERNRGYLIKMPHKFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGNGNEKQEILFLEIWTNGSL PKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLNPKEALHEASRNLIDLFIPFLYKEEENLPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHT PLSP TF
Sbjct: 241 DNQHTAPLSPFTF 253



 Score = 46.2 bits (108), Expect(2) = e-141
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           AL+SIFIDQSELSP+VYNCLKRS
Sbjct: 268 ALQSIFIDQSELSPKVYNCLKRS 290


>ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [Tectona grandis]
           gi|438687635|emb|CCP47162.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688319|emb|CCP47251.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688443|emb|CCP47340.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
          Length = 337

 Score =  483 bits (1243), Expect(2) = e-140
 Identities = 238/253 (94%), Positives = 243/253 (96%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTC ASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCGASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPI+LCI L+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIELEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENL LE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLLLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTV LSP TF
Sbjct: 241 DNQHTVLLSPFTF 253



 Score = 47.0 bits (110), Expect(2) = e-140
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL PRVYNCLKRS
Sbjct: 268 ALKSIFIDQSELPPRVYNCLKRS 290


>ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta]
           gi|608608813|gb|AHW52216.1| RNA polymerase alpha subunit
           (chloroplast) [Rhazya stricta]
           gi|645929242|gb|AIB08766.1| RNA polymerase alpha subunit
           [Rhazya stricta]
          Length = 337

 Score =  481 bits (1238), Expect(2) = e-139
 Identities = 235/253 (92%), Positives = 241/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREK+TVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTC+ASICV+GPGYVTAQD
Sbjct: 61  CITRVKFEKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           I+LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK P NFQDGSYPIDAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEEN  LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLE 240

Query: 149 DNQHTVPLSPLTF 111
           +NQH VPLSP TF
Sbjct: 241 NNQHAVPLSPFTF 253



 Score = 46.6 bits (109), Expect(2) = e-139
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL PR+YNCLKRS
Sbjct: 268 ALKSIFIDQSELPPRIYNCLKRS 290


>gb|ADD31214.1| RNA polymerase alpha subunit protein (chloroplast) [Ehretia
           acuminata]
          Length = 339

 Score =  480 bits (1235), Expect(2) = e-139
 Identities = 239/255 (93%), Positives = 243/255 (95%), Gaps = 2/255 (0%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVIVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLEN--VPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 516
            ITR+K E+  VPHEYSTI+GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA
Sbjct: 61  SITRVKSESEKVPHEYSTISGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 120

Query: 515 QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMP 336
           QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK PHNFQDGSYPIDAVFMP
Sbjct: 121 QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMP 180

Query: 335 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLP 156
           VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEEN+ 
Sbjct: 181 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENVH 240

Query: 155 LEDNQHTVPLSPLTF 111
           LEDNQHTVPLSP  F
Sbjct: 241 LEDNQHTVPLSPFIF 255



 Score = 46.6 bits (109), Expect(2) = e-139
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL PR+YNCLKRS
Sbjct: 270 ALKSIFIDQSELPPRIYNCLKRS 292


>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
           gi|108773161|ref|YP_635671.1| RNA polymerase alpha
           subunit [Solanum tuberosum]
           gi|565356831|ref|XP_006345266.1| PREDICTED: DNA-directed
           RNA polymerase subunit alpha-like [Solanum tuberosum]
           gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           (chloroplast) [Solanum bulbocastanum]
           gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
           [Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
           polymerase alpha subunit [Solanum bulbocastanum]
           gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
           [Solanum tuberosum] gi|329124614|gb|AEB72171.1| RNA
           polymerase alpha subunit (chloroplast) [Solanum
           tuberosum] gi|329124701|gb|AEB72257.1| RNA polymerase
           alpha subunit (chloroplast) [Solanum tuberosum]
          Length = 337

 Score =  483 bits (1242), Expect(2) = e-139
 Identities = 236/253 (93%), Positives = 242/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP TF
Sbjct: 241 DNQHTVPLSPFTF 253



 Score = 43.1 bits (100), Expect(2) = e-139
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELS R+YNCLK S
Sbjct: 268 ALKSIFIDQSELSSRIYNCLKMS 290


>gb|ADD31215.1| RNA polymerase alpha subunit protein (chloroplast) [Ilex cornuta]
          Length = 337

 Score =  481 bits (1238), Expect(2) = e-139
 Identities = 236/253 (93%), Positives = 239/253 (94%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR K E +PHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK P+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYRNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHT+PL P  F
Sbjct: 241 DNQHTIPLPPFNF 253



 Score = 44.3 bits (103), Expect(2) = e-139
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQ EL PR+YNCLKRS
Sbjct: 268 ALKSIFIDQLELPPRIYNCLKRS 290


>gb|ADD31212.1| RNA polymerase alpha subunit protein (chloroplast) [Aucuba
           japonica]
          Length = 349

 Score =  478 bits (1231), Expect(2) = e-139
 Identities = 234/253 (92%), Positives = 239/253 (94%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMK QADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKSQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR K E +PHEYSTI GIQES+HEILMNLKEIVLRSNLYGTCD SICVRGPGY+TAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTCDTSICVRGPGYITAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVD TQHIASLTEPIDLCIGLQIERNRGYLIK P+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDKTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           N N+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NVNYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP TF
Sbjct: 241 DNQHTVPLSPFTF 253



 Score = 46.6 bits (109), Expect(2) = e-139
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL PR+YNCLKRS
Sbjct: 268 ALKSIFIDQSELPPRIYNCLKRS 290


>sp|Q06RA0.2|RPOA_JASNU RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP;
           AltName: Full=Plastid-encoded RNA polymerase subunit
           alpha; Short=RNA polymerase subunit alpha (chloroplast)
           [Jasminum nudiflorum]
          Length = 355

 Score =  486 bits (1250), Expect(2) = e-139
 Identities = 237/253 (93%), Positives = 242/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKV VSTRTLQWKCVESREDSKRLYYGRFILSPL KGQADTI I +RRALLGEIEGT
Sbjct: 1   MVREKVRVSTRTLQWKCVESREDSKRLYYGRFILSPLRKGQADTIAIGIRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K +NVPHEYSTIAGIQESVHEILMN KEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKSKNVPHEYSTIAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYL+KMPHN QDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYG+GNEK EILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEE  PLE
Sbjct: 181 NANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLE 240

Query: 149 DNQHTVPLSPLTF 111
           DN HTVPLSPLTF
Sbjct: 241 DNHHTVPLSPLTF 253



 Score = 38.9 bits (89), Expect(2) = e-139
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL P+VYNCLK S
Sbjct: 272 ALKSIFIDQSEL-PKVYNCLKGS 293


>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
           gi|813424048|ref|YP_009131744.1| RNA polymerase alpha
           subunit (chloroplast) [Solanum cheesmaniae]
           gi|813424153|ref|YP_009131993.1| RNA polymerase alpha
           subunit (chloroplast) [Solanum habrochaites]
           gi|813559439|ref|YP_009131827.1| RNA polymerase alpha
           subunit (chloroplast) [Solanum chilense]
           gi|813559523|ref|YP_009131910.1| RNA polymerase alpha
           subunit (chloroplast) [Solanum galapagense]
           gi|813559607|ref|YP_009132159.1| RNA polymerase alpha
           subunit (chloroplast) [Solanum peruvianum]
           gi|813559691|ref|YP_009132242.1| RNA polymerase alpha
           subunit (chloroplast) [Solanum pimpinellifolium]
           gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
           (chloroplast) [Solanum lycopersicum]
           gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum lycopersicum]
           gi|89241703|emb|CAJ32426.1| RNA polymerase alpha chain
           [Solanum lycopersicum] gi|757813377|gb|AJO25142.1| RNA
           polymerase alpha subunit (chloroplast) [Solanum
           lycopersicum] gi|779776248|gb|AJY78722.1| RNA polymerase
           alpha subunit (chloroplast) [Solanum cheesmaniae]
           gi|779776337|gb|AJY78805.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum chilense]
           gi|779776427|gb|AJY78888.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum galapagense]
           gi|779776518|gb|AJY78971.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum habrochaites]
           gi|779776608|gb|AJY79054.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum lycopersicum]
           gi|779776789|gb|AJY79220.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum peruvianum]
           gi|779776879|gb|AJY79303.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum pimpinellifolium]
          Length = 337

 Score =  481 bits (1238), Expect(2) = e-138
 Identities = 235/253 (92%), Positives = 242/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP TF
Sbjct: 241 DNQHTVPLSPFTF 253



 Score = 43.1 bits (100), Expect(2) = e-138
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELS R+YNCLK S
Sbjct: 268 ALKSIFIDQSELSSRIYNCLKMS 290


>ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [Solanum neorickii]
           gi|779776699|gb|AJY79137.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum neorickii]
          Length = 337

 Score =  481 bits (1237), Expect(2) = e-138
 Identities = 234/253 (92%), Positives = 242/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K E VPHEYSTI GIQESVHEILMNLKE+VLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEVVLRSNLYGTSEASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP TF
Sbjct: 241 DNQHTVPLSPFTF 253



 Score = 43.1 bits (100), Expect(2) = e-138
 Identities = 20/23 (86%), Positives = 21/23 (91%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSELS R+YNCLK S
Sbjct: 268 ALKSIFIDQSELSSRIYNCLKMS 290


>ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [Saracha punctata]
           gi|772657870|ref|YP_009128870.1| RNA polymerase alpha
           subunit (chloroplast) [Iochroma loxense]
           gi|788229498|ref|YP_009123663.1| RNA polymerase alpha
           subunit (chloroplast) [Iochroma stenanthum]
           gi|788512410|ref|YP_009123188.1| RNA polymerase alpha
           subunit (chloroplast) [Dunalia obovata]
           gi|803360269|ref|YP_009123382.1| RNA polymerase alpha
           subunit (chloroplast) [Iochroma nitidum]
           gi|813559832|ref|YP_009132783.1| RNA polymerase alpha
           subunit (chloroplast) [Dunalia brachyacantha]
           gi|821318364|ref|YP_009139499.1| RNA polymerase alpha
           subunit (chloroplast) [Dunalia solanacea]
           gi|827046045|ref|YP_009142357.1| RNA polymerase alpha
           subunit (chloroplast) [Iochroma tingoanum]
           gi|756419301|gb|AJL34440.1| RNA polymerase alpha subunit
           (chloroplast) [Dunalia obovata]
           gi|756762019|gb|AJM70131.1| RNA polymerase alpha subunit
           (chloroplast) [Iochroma nitidum]
           gi|757173743|gb|AJN90537.1| RNA polymerase alpha subunit
           (chloroplast) [Iochroma stenanthum]
           gi|758185536|gb|AJO61611.1| RNA polymerase alpha subunit
           (chloroplast) [Saracha punctata]
           gi|765365581|gb|AJR30409.1| RNA polymerase alpha subunit
           (chloroplast) [Vassobia breviflora]
           gi|766544031|gb|AJS14284.1| RNA polymerase alpha subunit
           (chloroplast) [Iochroma loxense]
           gi|766544117|gb|AJS14368.1| RNA polymerase alpha subunit
           (chloroplast) [Iochroma calycinum]
           gi|770591288|gb|AJW75080.1| ribosomal protein L16
           (chloroplast) [Vassobia dichotoma]
           gi|800876083|gb|AKA66563.1| RNA polymerase alpha subunit
           (chloroplast) [Dunalia brachyacantha]
           gi|817597882|gb|AKF78442.1| RNA polymerase alpha subunit
           (chloroplast) [Dunalia solanacea]
           gi|820957844|gb|AKH02349.1| RNA polymerase alpha subunit
           (chloroplast) [Iochroma tingoanum]
          Length = 337

 Score =  482 bits (1240), Expect(2) = e-138
 Identities = 236/253 (93%), Positives = 241/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVE VDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP TF
Sbjct: 241 DNQHTVPLSPFTF 253



 Score = 41.2 bits (95), Expect(2) = e-138
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL  R+YNCLK S
Sbjct: 268 ALKSIFIDQSELPSRIYNCLKMS 290


>ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [Capsicum annuum]
           gi|814071816|ref|YP_009122895.1| RNA polymerase alpha
           subunit (chloroplast) [Capsicum lycianthoides]
           gi|401065964|gb|AFP90808.1| RNA polymerase alpha subunit
           (chloroplast) [Capsicum annuum]
           gi|641803841|gb|AIA76992.1| RNA polymerase alpha subunit
           (chloroplast) (chloroplast) [Capsicum annuum var.
           glabriusculum] gi|756141197|gb|AJK90778.1| RNA
           polymerase alpha subunit (chloroplast) [Capsicum
           lycianthoides]
          Length = 337

 Score =  482 bits (1240), Expect(2) = e-138
 Identities = 236/253 (93%), Positives = 241/253 (95%)
 Frame = -1

Query: 869 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 690
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 689 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 510
           CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120

Query: 509 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 330
           IILPPYVE VDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 329 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 150
           NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240

Query: 149 DNQHTVPLSPLTF 111
           DNQHTVPLSP TF
Sbjct: 241 DNQHTVPLSPFTF 253



 Score = 41.2 bits (95), Expect(2) = e-138
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -3

Query: 69  ALKSIFIDQSELSPRVYNCLKRS 1
           ALKSIFIDQSEL  R+YNCLK S
Sbjct: 268 ALKSIFIDQSELPSRIYNCLKMS 290