BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00018225
         (1791 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011087492.1| PREDICTED: RNA polymerase II-associated prot...   584   e-164
ref|XP_011087491.1| PREDICTED: RNA polymerase II-associated prot...   578   e-162
ref|XP_012840399.1| PREDICTED: RNA polymerase II-associated prot...   536   e-149
ref|XP_012840398.1| PREDICTED: RNA polymerase II-associated prot...   530   e-147
gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Erythra...   506   e-140
emb|CDP18255.1| unnamed protein product [Coffea canephora]            501   e-139
ref|XP_009767310.1| PREDICTED: RNA polymerase II-associated prot...   498   e-138
ref|XP_009611909.1| PREDICTED: RNA polymerase II-associated prot...   492   e-136
ref|XP_009767318.1| PREDICTED: RNA polymerase II-associated prot...   489   e-135
ref|XP_009767301.1| PREDICTED: RNA polymerase II-associated prot...   486   e-134
ref|XP_009611910.1| PREDICTED: RNA polymerase II-associated prot...   483   e-133
ref|XP_009767326.1| PREDICTED: RNA polymerase II-associated prot...   475   e-131
ref|XP_009611912.1| PREDICTED: RNA polymerase II-associated prot...   473   e-130
ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated prot...   473   e-130
ref|XP_009611911.1| PREDICTED: RNA polymerase II-associated prot...   471   e-130
ref|XP_009767331.1| PREDICTED: RNA polymerase II-associated prot...   471   e-130
ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated prot...   471   e-129
ref|XP_009767339.1| PREDICTED: RNA polymerase II-associated prot...   468   e-129
ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated prot...   466   e-128
ref|XP_010327507.1| PREDICTED: RNA polymerase II-associated prot...   464   e-127

>ref|XP_011087492.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Sesamum
            indicum]
          Length = 470

 Score =  584 bits (1506), Expect = e-164
 Identities = 314/477 (65%), Positives = 362/477 (75%), Gaps = 4/477 (0%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPSKHSRDQ QDFEGLLNNLQDWE                        +   +  AS
Sbjct: 1    MARVPSKHSRDQAQDFEGLLNNLQDWELSFKDKDKKLRSDGVSE------GKLDLLGQAS 54

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            + +    VNGKQ + K  +SDN  + RQYDYL +Y+A+ RLSGG  ++ES VDANSEKEL
Sbjct: 55   RSTASARVNGKQTMEKSPSSDNTSAVRQYDYLTEYEALSRLSGGIQSQESFVDANSEKEL 114

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF +AIDCYSRSI  SPTAVAYANRAMAYIK+KRFQEAENDCTEALNLDDRY
Sbjct: 115  GNEFFKQKKFVDAIDCYSRSIALSPTAVAYANRAMAYIKLKRFQEAENDCTEALNLDDRY 174

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES DDA FALRLEP NQE+KKQYAE+KSLL+KEILKK SG  
Sbjct: 175  IKAYSRRSTARKELGKLKESIDDAEFALRLEPQNQEIKKQYAELKSLLQKEILKKASGGL 234

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSEN---REVPAETSMEV 825
             GS++G +  GK +VDK+K + K+Q+VST+S  G VAEIL+++ E    R+V AETSMEV
Sbjct: 235  AGSVRGAQ-PGKPEVDKNKNVQKLQAVSTSSPEGRVAEILEEHPEGNNIRDVAAETSMEV 293

Query: 824  ESSSLRTHRSHVDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNSAY 645
            E++++R+     D+G  T K K K+ +QEL+ SVQ                NIVPPNSAY
Sbjct: 294  ETNNIRSTGFKPDTGSGTAKKKTKDTKQELRASVQELAAKAASLAKAEAAKNIVPPNSAY 353

Query: 644  QFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDLGV 465
            QFEVSWRG SGDR+LQARLLKVT  TALPGIFKNALSA +LVD+IRCIATFF EDM LGV
Sbjct: 354  QFEVSWRGFSGDRDLQARLLKVTSPTALPGIFKNALSASILVDVIRCIATFFTEDMALGV 413

Query: 464  KYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVKQ 294
            +YL+NL K+PRFDMIIMCLSP DKADL KIWNE FSKG  DY + LGNLR RYG+KQ
Sbjct: 414  EYLQNLAKIPRFDMIIMCLSPLDKADLSKIWNEVFSKGMTDYTDILGNLRLRYGIKQ 470


>ref|XP_011087491.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Sesamum
            indicum]
          Length = 476

 Score =  578 bits (1489), Expect = e-162
 Identities = 314/483 (65%), Positives = 362/483 (74%), Gaps = 10/483 (2%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQD------FEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRH 1551
            MA+VPSKHSRDQ QD      FEGLLNNLQDWE                        +  
Sbjct: 1    MARVPSKHSRDQAQDCLTGQDFEGLLNNLQDWELSFKDKDKKLRSDGVSE------GKLD 54

Query: 1550 SMNSASQHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDA 1374
             +  AS+ +    VNGKQ + K  +SDN  + RQYDYL +Y+A+ RLSGG  ++ES VDA
Sbjct: 55   LLGQASRSTASARVNGKQTMEKSPSSDNTSAVRQYDYLTEYEALSRLSGGIQSQESFVDA 114

Query: 1373 NSEKELGNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEAL 1194
            NSEKELGNEFFKQKKF +AIDCYSRSI  SPTAVAYANRAMAYIK+KRFQEAENDCTEAL
Sbjct: 115  NSEKELGNEFFKQKKFVDAIDCYSRSIALSPTAVAYANRAMAYIKLKRFQEAENDCTEAL 174

Query: 1193 NLDDRYIKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILK 1014
            NLDDRYIKAYSRRSTARKELGKLKES DDA FALRLEP NQE+KKQYAE+KSLL+KEILK
Sbjct: 175  NLDDRYIKAYSRRSTARKELGKLKESIDDAEFALRLEPQNQEIKKQYAELKSLLQKEILK 234

Query: 1013 KTSGATQGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSEN---REVPA 843
            K SG   GS++G +  GK +VDK+K + K+Q+VST+S  G VAEIL+++ E    R+V A
Sbjct: 235  KASGGLAGSVRGAQ-PGKPEVDKNKNVQKLQAVSTSSPEGRVAEILEEHPEGNNIRDVAA 293

Query: 842  ETSMEVESSSLRTHRSHVDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIV 663
            ETSMEVE++++R+     D+G  T K K K+ +QEL+ SVQ                NIV
Sbjct: 294  ETSMEVETNNIRSTGFKPDTGSGTAKKKTKDTKQELRASVQELAAKAASLAKAEAAKNIV 353

Query: 662  PPNSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFME 483
            PPNSAYQFEVSWRG SGDR+LQARLLKVT  TALPGIFKNALSA +LVD+IRCIATFF E
Sbjct: 354  PPNSAYQFEVSWRGFSGDRDLQARLLKVTSPTALPGIFKNALSASILVDVIRCIATFFTE 413

Query: 482  DMDLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYG 303
            DM LGV+YL+NL K+PRFDMIIMCLSP DKADL KIWNE FSKG  DY + LGNLR RYG
Sbjct: 414  DMALGVEYLQNLAKIPRFDMIIMCLSPLDKADLSKIWNEVFSKGMTDYTDILGNLRLRYG 473

Query: 302  VKQ 294
            +KQ
Sbjct: 474  IKQ 476


>ref|XP_012840399.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Erythranthe guttatus]
          Length = 469

 Score =  536 bits (1380), Expect = e-149
 Identities = 292/476 (61%), Positives = 346/476 (72%), Gaps = 4/476 (0%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MAK PSKHSRD  Q+ EGLLNNLQDWE                         + S N+  
Sbjct: 1    MAKTPSKHSRDLPQELEGLLNNLQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +  +   V+ KQ + K  + +N  + +QYD+LK+Y+A+ RLS    + ES VDANSEKEL
Sbjct: 61   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 120

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAIDCYSRSI  SP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 121  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 180

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES DDA FALRLEP NQE+KKQ+AE KSLLEK ILKK SGA 
Sbjct: 181  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 240

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDN---SENREVPAETSMEV 825
             GS++G +  GK +VDK+  + K  S       G V EIL++N   +++REV A+TSME+
Sbjct: 241  TGSVEGAQ-PGKSEVDKNNNVQKPLS-------GRVTEILEENPKGNKSREVTADTSMEI 292

Query: 824  ESSSLRTHRSHVDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNSAY 645
            + +S+R++ S V +   T K+K KNG+Q+LK SVQ                NIVPPNSAY
Sbjct: 293  KQNSVRSNGSDVITDSETAKTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPNSAY 352

Query: 644  QFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDLGV 465
            QFEVSWRGLS DRNLQ RLL+VT   ALPGIFKNALSAP+LVDIIRCIATFF+EDM L V
Sbjct: 353  QFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILVDIIRCIATFFVEDMALAV 412

Query: 464  KYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
             YL+NLTK+PRFDMIIMCLS +DK+D+ KIW+E F KGT DY E L +LR RYG+K
Sbjct: 413  DYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADYGEILRDLRIRYGIK 468


>ref|XP_012840398.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Erythranthe guttatus] gi|604329640|gb|EYU34894.1|
            hypothetical protein MIMGU_mgv1a005743mg [Erythranthe
            guttata]
          Length = 472

 Score =  530 bits (1366), Expect = e-147
 Identities = 292/479 (60%), Positives = 346/479 (72%), Gaps = 7/479 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MAK PSKHSRD  Q+ EGLLNNLQDWE                         + S N+  
Sbjct: 1    MAKTPSKHSRDLPQELEGLLNNLQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +  +   V+ KQ + K  + +N  + +QYD+LK+Y+A+ RLS    + ES VDANSEKEL
Sbjct: 61   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 120

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAIDCYSRSI  SP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 121  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 180

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES DDA FALRLEP NQE+KKQ+AE KSLLEK ILKK SGA 
Sbjct: 181  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 240

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDN---SENREVPAETSMEV 825
             GS++G +  GK +VDK+  + K  S       G V EIL++N   +++REV A+TSME+
Sbjct: 241  TGSVEGAQ-PGKSEVDKNNNVQKPLS-------GRVTEILEENPKGNKSREVTADTSMEI 292

Query: 824  ESSSLRTHRSHVDSGLVTVK---SKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPN 654
            + +S+R++ S V +   T K   +K KNG+Q+LK SVQ                NIVPPN
Sbjct: 293  KQNSVRSNGSDVITDSETAKLSQTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPN 352

Query: 653  SAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMD 474
            SAYQFEVSWRGLS DRNLQ RLL+VT   ALPGIFKNALSAP+LVDIIRCIATFF+EDM 
Sbjct: 353  SAYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILVDIIRCIATFFVEDMA 412

Query: 473  LGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
            L V YL+NLTK+PRFDMIIMCLS +DK+D+ KIW+E F KGT DY E L +LR RYG+K
Sbjct: 413  LAVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADYGEILRDLRIRYGIK 471


>gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Erythranthe guttata]
          Length = 462

 Score =  506 bits (1304), Expect = e-140
 Identities = 284/479 (59%), Positives = 337/479 (70%), Gaps = 7/479 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MAK PSKHSRD            QDWE                         + S N+  
Sbjct: 1    MAKTPSKHSRDL----------PQDWELSFKEKDKKMRSDAVGKAKLKDQLGQPSGNNVG 50

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +  +   V+ KQ + K  + +N  + +QYD+LK+Y+A+ RLS    + ES VDANSEKEL
Sbjct: 51   RPYDSAKVHRKQTMEKTPSYENPSTVKQYDHLKEYEALSRLSSAVPSTESFVDANSEKEL 110

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAIDCYSRSI  SP+AVAYANRAMAYIK++RFQEAENDCTEALNLDDRY
Sbjct: 111  GNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRAMAYIKIRRFQEAENDCTEALNLDDRY 170

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES DDA FALRLEP NQE+KKQ+AE KSLLEK ILKK SGA 
Sbjct: 171  IKAYSRRSTARKELGKLKESMDDAEFALRLEPQNQEIKKQFAESKSLLEKAILKKVSGAL 230

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDN---SENREVPAETSMEV 825
             GS++G +  GK +VDK+  + K  S       G V EIL++N   +++REV A+TSME+
Sbjct: 231  TGSVEGAQ-PGKSEVDKNNNVQKPLS-------GRVTEILEENPKGNKSREVTADTSMEI 282

Query: 824  ESSSLRTHRSHVDSGLVTVK---SKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPN 654
            + +S+R++ S V +   T K   +K KNG+Q+LK SVQ                NIVPPN
Sbjct: 283  KQNSVRSNGSDVITDSETAKLSQTKPKNGKQQLKASVQELAAKAANLAKAEAAKNIVPPN 342

Query: 653  SAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMD 474
            SAYQFEVSWRGLS DRNLQ RLL+VT   ALPGIFKNALSAP+LVDIIRCIATFF+EDM 
Sbjct: 343  SAYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILVDIIRCIATFFVEDMA 402

Query: 473  LGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
            L V YL+NLTK+PRFDMIIMCLS +DK+D+ KIW+E F KGT DY E L +LR RYG+K
Sbjct: 403  LAVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADYGEILRDLRIRYGIK 461


>emb|CDP18255.1| unnamed protein product [Coffea canephora]
          Length = 466

 Score =  501 bits (1290), Expect = e-139
 Identities = 271/481 (56%), Positives = 339/481 (70%), Gaps = 12/481 (2%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            M++VPSKHSRDQ QDFEGLLNNLQDWE                     L AQRH++ +A+
Sbjct: 1    MSRVPSKHSRDQAQDFEGLLNNLQDWELSFKDKDKKLKSQSRGKEKADLLAQRHNVANAN 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            Q S+ + V  +  V K    D   + ++YDYL++YDA+R+LS  F  EES VDANSEKEL
Sbjct: 61   QLSSSSRVGERHAVEKNANEDIGDAAKKYDYLRNYDAMRQLSSSFMTEESSVDANSEKEL 120

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNE+FK KKFNEAIDCYSRSI                     F+EAE+DCTEALNLDDRY
Sbjct: 121  GNEYFKHKKFNEAIDCYSRSIAL-------------------FEEAESDCTEALNLDDRY 161

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKE++DDA FALRLEP NQE+KKQYAE KSLL+KEILKK S A+
Sbjct: 162  IKAYSRRSTARKELGKLKEAYDDAEFALRLEPQNQEIKKQYAEAKSLLDKEILKKVSRAS 221

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSE--NREVPAETSMEVE 822
              S+QG+++AGK KV+ +K ++ V+ VS+   +G VAE+  D+++  N E+P +T+M ++
Sbjct: 222  TSSVQGLQKAGKSKVETNKAVNGVKPVSSDFNSGMVAEVQDDHTKGNNGEIPLKTAMRLD 281

Query: 821  SSSLRT--------HRSHV-DSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXN 669
             +S+++        H S + ++ L T K    NG+ ELK SVQ                 
Sbjct: 282  GTSMKSKDQNGNASHESALQNTALETTKRSSTNGKHELKTSVQELAARAATLAKAEAAKI 341

Query: 668  IVPPNSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFF 489
            I PPNSAYQFEVSWRGLSGDR+LQA+LLK TP T+LP IFKNALSA +L+DI+ CIATFF
Sbjct: 342  IAPPNSAYQFEVSWRGLSGDRSLQAQLLKATPPTSLPQIFKNALSASLLMDILGCIATFF 401

Query: 488  MEDMDLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSR 309
            +ED+DL VK+LENLTK+PRFDMI+MCLS +DKADL ++WNE FS+ TP+YAE L  LRSR
Sbjct: 402  IEDVDLAVKFLENLTKIPRFDMIVMCLSSADKADLFRMWNEVFSQTTPEYAEILSRLRSR 461

Query: 308  Y 306
            Y
Sbjct: 462  Y 462


>ref|XP_009767310.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Nicotiana sylvestris]
          Length = 464

 Score =  498 bits (1281), Expect = e-138
 Identities = 278/477 (58%), Positives = 326/477 (68%), Gaps = 6/477 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VP KH+RDQFQD +GLLNNLQDWE                         R   +  S
Sbjct: 1    MARVPGKHTRDQFQDMQGLLNNLQDWELSLKDKDKKMKSQARGKEKL-----REDWSHTS 55

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  VNG Q VGK       G+   YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 56   ELPTGPQVNGTQRVGKSTLIS--GAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 113

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAIDCYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 114  GNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRY 173

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ SGAT
Sbjct: 174  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGAT 233

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG +  G  K +K+ P+  +QSV ++     V +I    S +R+VP  T+MEVE +
Sbjct: 234  GVSAQGAQNTG--KTNKTGPV--IQSVGSSQKVAEVRKIPAKES-SRDVPG-TAMEVEDT 287

Query: 815  SLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNS 651
             ++ +    D+      L   K  HKN +QELK SVQ                NI PPNS
Sbjct: 288  HMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNS 347

Query: 650  AYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDL 471
            AYQFEVSWRGLSGDR+LQ  LLKVT  + LP IFKNALSAPML+DI+RC+ATF +EDMDL
Sbjct: 348  AYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMDL 407

Query: 470  GVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
             ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  +++  LG LR +YG+
Sbjct: 408  AIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYGL 464


>ref|XP_009611909.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Nicotiana tomentosiformis]
          Length = 465

 Score =  492 bits (1266), Expect = e-136
 Identities = 275/477 (57%), Positives = 318/477 (66%), Gaps = 6/477 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPSKHSRDQFQD +GLLN LQDWE                         R   +  S
Sbjct: 1    MARVPSKHSRDQFQDMQGLLNTLQDWELSLKDKDKKMKSQARGKEKL-----REDWSHTS 55

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  V G Q VGK  +  +      YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 56   ELPTGPQVTGTQRVGKSTSISSAAG--PYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 113

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAI CYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 114  GNEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRY 173

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ S AT
Sbjct: 174  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAAT 233

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG ++ G  K +K+ P+  +QSVS +S        +     NR+VP  T+MEVE +
Sbjct: 234  GVSAQGAQKTG--KTNKTGPV--IQSVSGSSQKVAEVRKIPAKENNRDVPG-TAMEVEDT 288

Query: 815  SLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNS 651
             ++ +    D+      L   K  HKN +QELK SVQ                NI PPNS
Sbjct: 289  HMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNS 348

Query: 650  AYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDL 471
            AYQFEVSWRGLSGDRNLQ  LLKVT    LP IFKNALSAPML+DI+RC+ATF +EDMDL
Sbjct: 349  AYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMDL 408

Query: 470  GVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
             ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  ++   L  LR  YG+
Sbjct: 409  AIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYGL 465


>ref|XP_009767318.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Nicotiana sylvestris]
          Length = 461

 Score =  489 bits (1259), Expect = e-135
 Identities = 277/477 (58%), Positives = 324/477 (67%), Gaps = 6/477 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VP KH+RDQFQ   GLLNNLQDWE                         R   +  S
Sbjct: 1    MARVPGKHTRDQFQ---GLLNNLQDWELSLKDKDKKMKSQARGKEKL-----REDWSHTS 52

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  VNG Q VGK       G+   YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 53   ELPTGPQVNGTQRVGKSTLIS--GAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 110

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAIDCYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 111  GNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRY 170

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ SGAT
Sbjct: 171  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGAT 230

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG +  G  K +K+ P+  +QSV ++     V +I    S +R+VP  T+MEVE +
Sbjct: 231  GVSAQGAQNTG--KTNKTGPV--IQSVGSSQKVAEVRKIPAKES-SRDVPG-TAMEVEDT 284

Query: 815  SLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNS 651
             ++ +    D+      L   K  HKN +QELK SVQ                NI PPNS
Sbjct: 285  HMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNS 344

Query: 650  AYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDL 471
            AYQFEVSWRGLSGDR+LQ  LLKVT  + LP IFKNALSAPML+DI+RC+ATF +EDMDL
Sbjct: 345  AYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMDL 404

Query: 470  GVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
             ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  +++  LG LR +YG+
Sbjct: 405  AIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYGL 461


>ref|XP_009767301.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Nicotiana sylvestris]
          Length = 484

 Score =  486 bits (1250), Expect = e-134
 Identities = 278/497 (55%), Positives = 326/497 (65%), Gaps = 26/497 (5%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQ--------------------DFEGLLNNLQDWEXXXXXXXXXXXXX 1593
            MA+VP KH+RDQFQ                    D +GLLNNLQDWE             
Sbjct: 1    MARVPGKHTRDQFQGFICSILSGLWFYWHYLADQDMQGLLNNLQDWELSLKDKDKKMKSQ 60

Query: 1592 XXXXXXXXLPAQRHSMNSASQHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRR 1413
                        R   +  S+   G  VNG Q VGK       G+   YDY K Y+    
Sbjct: 61   ARGKEKL-----REDWSHTSELPTGPQVNGTQRVGKSTLIS--GAAGPYDYSKKYNPTSH 113

Query: 1412 LSGGFTAEES-VDANSEKELGNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKV 1236
            LS    +EES +DANSEKELGNEFFKQKKF EAIDCYSRSI  SPTAVAYANRAMAY+K+
Sbjct: 114  LSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL 173

Query: 1235 KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQ 1056
            KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQ
Sbjct: 174  KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQ 233

Query: 1055 YAEVKSLLEKEILKKTSGATQGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEIL 876
            Y EVK+L EKEILK+ SGAT  S QG +  G  K +K+ P+  +QSV ++     V +I 
Sbjct: 234  YGEVKALYEKEILKRVSGATGVSAQGAQNTG--KTNKTGPV--IQSVGSSQKVAEVRKIP 289

Query: 875  KDNSENREVPAETSMEVESSSLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXX 711
               S +R+VP  T+MEVE + ++ +    D+      L   K  HKN +QELK SVQ   
Sbjct: 290  AKES-SRDVPG-TAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELA 347

Query: 710  XXXXXXXXXXXXXNIVPPNSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSA 531
                         NI PPNSAYQFEVSWRGLSGDR+LQ  LLKVT  + LP IFKNALSA
Sbjct: 348  ARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSA 407

Query: 530  PMLVDIIRCIATFFMEDMDLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKG 351
            PML+DI+RC+ATF +EDMDL ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG
Sbjct: 408  PMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKG 467

Query: 350  TPDYAEKLGNLRSRYGV 300
              +++  LG LR +YG+
Sbjct: 468  AEEHSATLGALRLKYGL 484


>ref|XP_009611910.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Nicotiana tomentosiformis]
          Length = 462

 Score =  483 bits (1244), Expect = e-133
 Identities = 274/477 (57%), Positives = 316/477 (66%), Gaps = 6/477 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPSKHSRDQFQ   GLLN LQDWE                         R   +  S
Sbjct: 1    MARVPSKHSRDQFQ---GLLNTLQDWELSLKDKDKKMKSQARGKEKL-----REDWSHTS 52

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  V G Q VGK  +  +      YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 53   ELPTGPQVTGTQRVGKSTSISSAAG--PYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 110

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAI CYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 111  GNEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRY 170

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ S AT
Sbjct: 171  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAAT 230

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG ++ G  K +K+ P+  +QSVS +S        +     NR+VP  T+MEVE +
Sbjct: 231  GVSAQGAQKTG--KTNKTGPV--IQSVSGSSQKVAEVRKIPAKENNRDVPG-TAMEVEDT 285

Query: 815  SLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNS 651
             ++ +    D+      L   K  HKN +QELK SVQ                NI PPNS
Sbjct: 286  HMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNS 345

Query: 650  AYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDL 471
            AYQFEVSWRGLSGDRNLQ  LLKVT    LP IFKNALSAPML+DI+RC+ATF +EDMDL
Sbjct: 346  AYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMDL 405

Query: 470  GVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
             ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  ++   L  LR  YG+
Sbjct: 406  AIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYGL 462


>ref|XP_009767326.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4
            [Nicotiana sylvestris]
          Length = 454

 Score =  475 bits (1222), Expect = e-131
 Identities = 271/477 (56%), Positives = 322/477 (67%), Gaps = 6/477 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VP KH+RDQFQD+E    +L+D +                         R   +  S
Sbjct: 1    MARVPGKHTRDQFQDWE---LSLKDKDKKMKSQARGKEKL------------REDWSHTS 45

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  VNG Q VGK       G+   YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 46   ELPTGPQVNGTQRVGKSTLIS--GAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 103

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAIDCYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 104  GNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRY 163

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ SGAT
Sbjct: 164  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGAT 223

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG +  G  K +K+ P+  +QSV ++     V +I    S +R+VP  T+MEVE +
Sbjct: 224  GVSAQGAQNTG--KTNKTGPV--IQSVGSSQKVAEVRKIPAKES-SRDVPG-TAMEVEDT 277

Query: 815  SLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNS 651
             ++ +    D+      L   K  HKN +QELK SVQ                NI PPNS
Sbjct: 278  HMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNS 337

Query: 650  AYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDL 471
            AYQFEVSWRGLSGDR+LQ  LLKVT  + LP IFKNALSAPML+DI+RC+ATF +EDMDL
Sbjct: 338  AYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMDL 397

Query: 470  GVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
             ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  +++  LG LR +YG+
Sbjct: 398  AIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYGL 454


>ref|XP_009611912.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4
            [Nicotiana tomentosiformis]
          Length = 427

 Score =  473 bits (1217), Expect = e-130
 Identities = 270/472 (57%), Positives = 308/472 (65%), Gaps = 1/472 (0%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPSKHSRDQFQD +GLLN LQDWE                         R   +  S
Sbjct: 1    MARVPSKHSRDQFQDMQGLLNTLQDWELSLKDKDKKMKSQARGKEKL-----REDWSHTS 55

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  V G Q VGK  +  +      YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 56   ELPTGPQVTGTQRVGKSTSISSAAG--PYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 113

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAI CYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 114  GNEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRY 173

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ S AT
Sbjct: 174  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAAT 233

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG ++ G  K +K+ P+  +QSVS +S    VAE+       R++PA         
Sbjct: 234  GVSAQGAQKTG--KTNKTGPV--IQSVSGSSQK--VAEV-------RKIPA--------- 271

Query: 815  SLRTHRSHVDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNSAYQFE 636
                            K  HKN +QELK SVQ                NI PPNSAYQFE
Sbjct: 272  ----------------KRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNSAYQFE 315

Query: 635  VSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDLGVKYL 456
            VSWRGLSGDRNLQ  LLKVT    LP IFKNALSAPML+DI+RC+ATF +EDMDL ++YL
Sbjct: 316  VSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMDLAIRYL 375

Query: 455  ENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
            ENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  ++   L  LR  YG+
Sbjct: 376  ENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYGL 427


>ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
            [Solanum tuberosum]
          Length = 468

 Score =  473 bits (1217), Expect = e-130
 Identities = 265/480 (55%), Positives = 315/480 (65%), Gaps = 8/480 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MAKVPSKHSRDQFQD +GLLNNLQDWE                         R S    S
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETLREDWSRTSELLTS 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
               NGT V         +++    +   Y+Y K+Y+ I  LS    +EES ++ANSEKEL
Sbjct: 61   PQVNGTRVG--------KSTSIRSAAGPYNYSKNYNPISHLSSELISEESNINANSEKEL 112

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNE FKQKKFNEAIDCYSRSI  SPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 113  GNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRY 172

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRST+RKELGKLKES +DA FALRLEP N E+KKQY EVK+L EKEI K+ SGAT
Sbjct: 173  IKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSGAT 232

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S Q  +++G  K  KS P+  +QSVS++S        +     NR+VP    +E    
Sbjct: 233  DVSAQRAQKSG--KTIKSGPV--IQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVEDTHM 288

Query: 815  SLRTHRSH-------VDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPP 657
             +    S        ++    T K  HK  +QEL+ SVQ                NI  P
Sbjct: 289  QINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAP 348

Query: 656  NSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDM 477
            NSAYQFEVSWRGLSGDRNLQ +LLKVT    LP IFKNALSAPML+DI+RC+ATFF+EDM
Sbjct: 349  NSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVATFFIEDM 408

Query: 476  DLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
            +L ++YLE+LTKVPRFDMIIMCLS +DK++L KIW E F K   +++  LG LR  YG+K
Sbjct: 409  NLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALRVPYGLK 468


>ref|XP_009611911.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Nicotiana tomentosiformis]
          Length = 455

 Score =  471 bits (1213), Expect = e-130
 Identities = 269/477 (56%), Positives = 315/477 (66%), Gaps = 6/477 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPSKHSRDQFQD+E    +L+D +                         R   +  S
Sbjct: 1    MARVPSKHSRDQFQDWE---LSLKDKDKKMKSQARGKEKL------------REDWSHTS 45

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
            +   G  V G Q VGK  +  +      YDY K Y+    LS    +EES +DANSEKEL
Sbjct: 46   ELPTGPQVTGTQRVGKSTSISSAAG--PYDYSKKYNPTSHLSSEMLSEESNIDANSEKEL 103

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNEFFKQKKF EAI CYSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 104  GNEFFKQKKFKEAIICYSRSIALSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRY 163

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ S AT
Sbjct: 164  IKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSAAT 223

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG ++ G  K +K+ P+  +QSVS +S        +     NR+VP  T+MEVE +
Sbjct: 224  GVSAQGAQKTG--KTNKTGPV--IQSVSGSSQKVAEVRKIPAKENNRDVPG-TAMEVEDT 278

Query: 815  SLRTHRSHVDSG-----LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNS 651
             ++ +    D+      L   K  HKN +QELK SVQ                NI PPNS
Sbjct: 279  HMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNS 338

Query: 650  AYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDL 471
            AYQFEVSWRGLSGDRNLQ  LLKVT    LP IFKNALSAPML+DI+RC+ATF +EDMDL
Sbjct: 339  AYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMDIVRCVATFSIEDMDL 398

Query: 470  GVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
             ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  ++   L  LR  YG+
Sbjct: 399  AIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHTATLSALRLNYGL 455


>ref|XP_009767331.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X5
            [Nicotiana sylvestris]
          Length = 449

 Score =  471 bits (1212), Expect = e-130
 Identities = 266/461 (57%), Positives = 312/461 (67%), Gaps = 6/461 (1%)
 Frame = -2

Query: 1664 EGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSASQHSNGTGVNGKQPVGK 1485
            +GLLNNLQDWE                         R   +  S+   G  VNG Q VGK
Sbjct: 2    QGLLNNLQDWELSLKDKDKKMKSQARGKEKL-----REDWSHTSELPTGPQVNGTQRVGK 56

Query: 1484 IRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKELGNEFFKQKKFNEAIDC 1308
                   G+   YDY K Y+    LS    +EES +DANSEKELGNEFFKQKKF EAIDC
Sbjct: 57   STLIS--GAAGPYDYSKKYNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDC 114

Query: 1307 YSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGK 1128
            YSRSI  SPTAVAYANRAMAY+K+KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGK
Sbjct: 115  YSRSIALSPTAVAYANRAMAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGK 174

Query: 1127 LKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGATQGSLQGVERAGKLKVD 948
            LKES +DA FA RLEP NQE+KKQY EVK+L EKEILK+ SGAT  S QG +  G  K +
Sbjct: 175  LKESIEDAEFASRLEPQNQEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNTG--KTN 232

Query: 947  KSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESSSLRTHRSHVDSG---- 780
            K+ P+  +QSV ++     V +I    S +R+VP  T+MEVE + ++ +    D+     
Sbjct: 233  KTGPV--IQSVGSSQKVAEVRKIPAKES-SRDVPG-TAMEVEDTHMQINSKGSDASATVP 288

Query: 779  -LVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPPNSAYQFEVSWRGLSGDRN 603
             L   K  HKN +QELK SVQ                NI PPNSAYQFEVSWRGLSGDR+
Sbjct: 289  TLNPAKRPHKNSKQELKESVQELAARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRD 348

Query: 602  LQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDMDLGVKYLENLTKVPRFDM 423
            LQ  LLKVT  + LP IFKNALSAPML+DI+RC+ATF +EDMDL ++YLENLTKVPRFDM
Sbjct: 349  LQTHLLKVTSPSMLPQIFKNALSAPMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDM 408

Query: 422  IIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGV 300
            IIMCLS +DKA+L KIW+E F KG  +++  LG LR +YG+
Sbjct: 409  IIMCLSSTDKAELVKIWDEVFCKGAEEHSATLGALRLKYGL 449


>ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Solanum
            lycopersicum]
          Length = 470

 Score =  471 bits (1211), Expect = e-129
 Identities = 267/481 (55%), Positives = 314/481 (65%), Gaps = 8/481 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPS HSRDQFQD +GL NNLQDWE                         R S    S
Sbjct: 1    MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETLKEDWSRTSEPLTS 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
              +NGT     Q VGK  +  N      Y Y K+Y+ I  LS    +EES ++ANSEKEL
Sbjct: 61   PQANGT-----QQVGKSTSIRNAAG--PYSYSKNYNPISHLSSELISEESNINANSEKEL 113

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNE FKQKKFNEAIDCYSRSI  SPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 114  GNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRY 173

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRST+RKELGKLKES +DA FAL LEP N E+KKQY EVK+L EKEILK+ SGAT
Sbjct: 174  IKAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSGAT 233

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG +++G  K  K  P+  +QSVS++S        +     NR+V     +E    
Sbjct: 234  DVSAQGPQKSG--KTIKIGPV--IQSVSSSSQKVAEVRTIPAKENNRDVLGTAKVEDTHM 289

Query: 815  SLRTHRSH-------VDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPP 657
             +    S        ++    T K  HK  +QEL+ SVQ                NI  P
Sbjct: 290  QISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAP 349

Query: 656  NSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDM 477
            NSAYQFEVSWRGLSGDRNLQ +LLKVT    LP IFKNALSAPML+DI+RCIATFF+EDM
Sbjct: 350  NSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIATFFIEDM 409

Query: 476  DLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
            +L ++YLE+LTKVPRFDMIIMCLS +DK++L KIW E F K   +++  LG LR  YG+K
Sbjct: 410  NLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEIFCKVAEEHSATLGALRVSYGLK 469

Query: 296  Q 294
            Q
Sbjct: 470  Q 470


>ref|XP_009767339.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X6
            [Nicotiana sylvestris]
          Length = 446

 Score =  468 bits (1204), Expect = e-129
 Identities = 271/492 (55%), Positives = 313/492 (63%), Gaps = 21/492 (4%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQ--------------------DFEGLLNNLQDWEXXXXXXXXXXXXX 1593
            MA+VP KH+RDQFQ                    D +GLLNNLQDWE             
Sbjct: 1    MARVPGKHTRDQFQGFICSILSGLWFYWHYLADQDMQGLLNNLQDWELSLKDKDKKMKSQ 60

Query: 1592 XXXXXXXXLPAQRHSMNSASQHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRR 1413
                        R   +  S+   G  VNG Q VGK       G+   YDY K Y+    
Sbjct: 61   ARGKEKL-----REDWSHTSELPTGPQVNGTQRVGKSTLIS--GAAGPYDYSKKYNPTSH 113

Query: 1412 LSGGFTAEES-VDANSEKELGNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKV 1236
            LS    +EES +DANSEKELGNEFFKQKKF EAIDCYSRSI  SPTAVAYANRAMAY+K+
Sbjct: 114  LSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL 173

Query: 1235 KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQ 1056
            KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKES +DA FA RLEP NQE+KKQ
Sbjct: 174  KRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQNQEIKKQ 233

Query: 1055 YAEVKSLLEKEILKKTSGATQGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEIL 876
            Y EVK+L EKEILK+ SGAT  S QG +  G  K +K+ P+  +QSV ++     VAE+ 
Sbjct: 234  YGEVKALYEKEILKRVSGATGVSAQGAQNTG--KTNKTGPV--IQSVGSSQK---VAEV- 285

Query: 875  KDNSENREVPAETSMEVESSSLRTHRSHVDSGLVTVKSKHKNGQQELKPSVQXXXXXXXX 696
                  R++PA                         K  HKN +QELK SVQ        
Sbjct: 286  ------RKIPA-------------------------KRPHKNSKQELKESVQELAARAAS 314

Query: 695  XXXXXXXXNIVPPNSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVD 516
                    NI PPNSAYQFEVSWRGLSGDR+LQ  LLKVT  + LP IFKNALSAPML+D
Sbjct: 315  LAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLMD 374

Query: 515  IIRCIATFFMEDMDLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYA 336
            I+RC+ATF +EDMDL ++YLENLTKVPRFDMIIMCLS +DKA+L KIW+E F KG  +++
Sbjct: 375  IVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHS 434

Query: 335  EKLGNLRSRYGV 300
              LG LR +YG+
Sbjct: 435  ATLGALRLKYGL 446


>ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Solanum tuberosum]
          Length = 467

 Score =  466 bits (1200), Expect = e-128
 Identities = 264/480 (55%), Positives = 314/480 (65%), Gaps = 8/480 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MAKVPSKHSRDQFQD +GLLNNLQDWE                         R S    S
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETLREDWSRTSELLTS 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
               NGT V         +++    +   Y+Y K+Y+ I  LS    +EES ++ANSEKEL
Sbjct: 61   PQVNGTRVG--------KSTSIRSAAGPYNYSKNYNPISHLSSELISEESNINANSEKEL 112

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNE FKQKKFNEAIDCYSRSI  SPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 113  GNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRY 172

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRST+RKELGKLKES +DA FALRLEP N E+KKQY EVK+L EK I K+ SGAT
Sbjct: 173  IKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEK-IRKRVSGAT 231

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S Q  +++G  K  KS P+  +QSVS++S        +     NR+VP    +E    
Sbjct: 232  DVSAQRAQKSG--KTIKSGPV--IQSVSSSSQKMAEVWTIPAKENNRDVPGTAKVEDTHM 287

Query: 815  SLRTHRSH-------VDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPP 657
             +    S        ++    T K  HK  +QEL+ SVQ                NI  P
Sbjct: 288  QINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAP 347

Query: 656  NSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDM 477
            NSAYQFEVSWRGLSGDRNLQ +LLKVT    LP IFKNALSAPML+DI+RC+ATFF+EDM
Sbjct: 348  NSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVATFFIEDM 407

Query: 476  DLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
            +L ++YLE+LTKVPRFDMIIMCLS +DK++L KIW E F K   +++  LG LR  YG+K
Sbjct: 408  NLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALRVPYGLK 467


>ref|XP_010327507.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Solanum
            lycopersicum]
          Length = 469

 Score =  464 bits (1194), Expect = e-127
 Identities = 266/481 (55%), Positives = 313/481 (65%), Gaps = 8/481 (1%)
 Frame = -2

Query: 1712 MAKVPSKHSRDQFQDFEGLLNNLQDWEXXXXXXXXXXXXXXXXXXXXXLPAQRHSMNSAS 1533
            MA+VPS HSRDQFQD +GL NNLQDWE                         R S    S
Sbjct: 1    MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETLKEDWSRTSEPLTS 60

Query: 1532 QHSNGTGVNGKQPVGKIRASDNLGSGRQYDYLKDYDAIRRLSGGFTAEES-VDANSEKEL 1356
              +NGT     Q VGK  +  N      Y Y K+Y+ I  LS    +EES ++ANSEKEL
Sbjct: 61   PQANGT-----QQVGKSTSIRNAAG--PYSYSKNYNPISHLSSELISEESNINANSEKEL 113

Query: 1355 GNEFFKQKKFNEAIDCYSRSIVFSPTAVAYANRAMAYIKVKRFQEAENDCTEALNLDDRY 1176
            GNE FKQKKFNEAIDCYSRSI  SPTAV+YANRAMAY+K+KRFQEAENDCTEALNLDDRY
Sbjct: 114  GNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRY 173

Query: 1175 IKAYSRRSTARKELGKLKESFDDAAFALRLEPHNQEVKKQYAEVKSLLEKEILKKTSGAT 996
            IKAYSRRST+RKELGKLKES +DA FAL LEP N E+KKQY EVK+L EK ILK+ SGAT
Sbjct: 174  IKAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEK-ILKRVSGAT 232

Query: 995  QGSLQGVERAGKLKVDKSKPIHKVQSVSTTSTAGGVAEILKDNSENREVPAETSMEVESS 816
              S QG +++G  K  K  P+  +QSVS++S        +     NR+V     +E    
Sbjct: 233  DVSAQGPQKSG--KTIKIGPV--IQSVSSSSQKVAEVRTIPAKENNRDVLGTAKVEDTHM 288

Query: 815  SLRTHRSH-------VDSGLVTVKSKHKNGQQELKPSVQXXXXXXXXXXXXXXXXNIVPP 657
             +    S        ++    T K  HK  +QEL+ SVQ                NI  P
Sbjct: 289  QISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAAKNIAAP 348

Query: 656  NSAYQFEVSWRGLSGDRNLQARLLKVTPATALPGIFKNALSAPMLVDIIRCIATFFMEDM 477
            NSAYQFEVSWRGLSGDRNLQ +LLKVT    LP IFKNALSAPML+DI+RCIATFF+EDM
Sbjct: 349  NSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIATFFIEDM 408

Query: 476  DLGVKYLENLTKVPRFDMIIMCLSPSDKADLHKIWNEAFSKGTPDYAEKLGNLRSRYGVK 297
            +L ++YLE+LTKVPRFDMIIMCLS +DK++L KIW E F K   +++  LG LR  YG+K
Sbjct: 409  NLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEIFCKVAEEHSATLGALRVSYGLK 468

Query: 296  Q 294
            Q
Sbjct: 469  Q 469