BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00015281
         (1517 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein...   659   0.0  
ref|XP_012849060.1| PREDICTED: protein RTF1 homolog [Erythranthe...   610   e-172
ref|XP_009623037.1| PREDICTED: RNA polymerase-associated protein...   604   e-170
ref|XP_009799534.1| PREDICTED: RNA polymerase-associated protein...   602   e-169
ref|XP_010057458.1| PREDICTED: RNA polymerase-associated protein...   595   e-167
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   593   e-166
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   592   e-166
ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein...   592   e-166
emb|CDO99584.1| unnamed protein product [Coffea canephora]            591   e-166
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   591   e-166
ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein...   585   e-164
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   584   e-164
ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein...   581   e-163
ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein...   581   e-163
ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein...   581   e-163
ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   580   e-163
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   580   e-163
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   579   e-162
ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein...   577   e-162
ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like ...   576   e-161

>ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sesamum
            indicum]
          Length = 627

 Score =  659 bits (1701), Expect = 0.0
 Identities = 340/435 (78%), Positives = 362/435 (83%)
 Frame = -2

Query: 1516 KRRSFATATFNXXXXXXXXXXXXXXXXXXXXGMADSDDEKMSESKTPTFEDIKEITIRRS 1337
            KRRSF  AT +                     MADSDD+K SESK PT+EDI+EITIRRS
Sbjct: 196  KRRSFTAATLSSPSRSESGSHSDGESTGDGG-MADSDDDKTSESKVPTYEDIREITIRRS 254

Query: 1336 KLAKWFMEPFFDELIVGCFVRVGIGKSRSGPIYRLCRVRNVDATDPDRQYKLDNKTTYKY 1157
            KLAKWFMEPFFDELIVGCFVRVGIGKSRSGPIYRLC VRNVDATDPD+QYKLDNKTTYKY
Sbjct: 255  KLAKWFMEPFFDELIVGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDKQYKLDNKTTYKY 314

Query: 1156 LNVVWGNESSAARWQMAMISDSSPLKEEFDQWVREVERSGGHMLSKQEVLEKRDAIQKTN 977
            LNVVWGNE+SAARWQMAMISDS P KEEFDQWVREVERSGGHM +KQEVLEK++AIQKTN
Sbjct: 315  LNVVWGNETSAARWQMAMISDSPPTKEEFDQWVREVERSGGHMPTKQEVLEKKEAIQKTN 374

Query: 976  TFVYSAATVKQMLQEKKSATWRPLNIAAEKDRLRRELEGAKMRDDEVEVERIKARLQELE 797
            +FVYSAATVKQMLQEKKSATWRPLN+AAEKDRLRR LE AK  +DE EVER+KARLQELE
Sbjct: 375  SFVYSAATVKQMLQEKKSATWRPLNVAAEKDRLRRALEVAKENEDEAEVERLKARLQELE 434

Query: 796  VSRQTQEKDSKAIRLAEMNKRNRVENFKNASEKKPVNTGLKAGEAGYDPFSRRWTRSRNY 617
             SRQ QEKDSKA++LAEMN+RNRVENF+NASE KPVNT LKAGEAGYDPFSRRWTRSRNY
Sbjct: 435  ASRQPQEKDSKAVKLAEMNRRNRVENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNY 494

Query: 616  YQSNPGGGEEAGDTNGDASAALEVANSNGGVPVXXXXXXXXXXXXXXXXXXXXXLVDTRA 437
            Y +N  GGE AG+TNGDASAAL    SNGG  V                     LVDT A
Sbjct: 495  YVANSNGGEAAGETNGDASAAL--PGSNGGGRVSAEAGVAATAAALEAAAGAGKLVDTSA 552

Query: 436  PVDQGTESNLLHNFELPISLAVLQKFGGPQGAQAGFMARKQRLEATVGCKVPENDGRRHA 257
            PVDQGTESN+LHNFELPISLA LQKFGGPQGAQAGFMARKQR+EAT+G KVPENDGRRHA
Sbjct: 553  PVDQGTESNMLHNFELPISLAALQKFGGPQGAQAGFMARKQRIEATLGVKVPENDGRRHA 612

Query: 256  LTLTVSDYKRRRGLL 212
            LTLTVSDYKRRRGLL
Sbjct: 613  LTLTVSDYKRRRGLL 627


>ref|XP_012849060.1| PREDICTED: protein RTF1 homolog [Erythranthe guttatus]
          Length = 623

 Score =  610 bits (1573), Expect = e-172
 Identities = 314/406 (77%), Positives = 342/406 (84%), Gaps = 3/406 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            + DSDD+K+S SK PTFEDIKEITIRRSKL+KWFMEPFFDELIVGCFVRVGIGKSRSG I
Sbjct: 233  LGDSDDDKVS-SKVPTFEDIKEITIRRSKLSKWFMEPFFDELIVGCFVRVGIGKSRSGSI 291

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDATDPDR+YKLDNKTT K+LNVVWG+ESSAARWQMAM+SDS+P +EEFDQW
Sbjct: 292  YRLCVVRNVDATDPDRKYKLDNKTTSKWLNVVWGSESSAARWQMAMVSDSAPQREEFDQW 351

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            V+EVER+GGHM +KQEV+EKRDAIQ+TNTFVYSAATVKQMLQEKKSATWRPLN+AAEKDR
Sbjct: 352  VKEVERNGGHMPTKQEVMEKRDAIQRTNTFVYSAATVKQMLQEKKSATWRPLNVAAEKDR 411

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRR LE AK  +D+ EVERIKARLQELE SRQ  EK+SKA++LAEMN++NRVENFKNASE
Sbjct: 412  LRRSLEVAKENEDDAEVERIKARLQELESSRQALEKNSKAVKLAEMNRKNRVENFKNASE 471

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAG---DTNGDASAALEVANSNG 530
             KPV  GLKAGEAGYDPFSRRWTRSRNYY  N GGG EA    +TNG   AAL    +  
Sbjct: 472  MKPVTIGLKAGEAGYDPFSRRWTRSRNYYVGNSGGGVEAEVAVETNGGGGAALPGLAATE 531

Query: 529  GVPVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGP 350
               V                      VDT APVDQGTESNLLHNFELPISLAVLQKFGGP
Sbjct: 532  AALVAAAGAGKL--------------VDTMAPVDQGTESNLLHNFELPISLAVLQKFGGP 577

Query: 349  QGAQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            QG QAGFMARKQR+EAT+G KVPENDGRRHALTL+VSDYKRRRGLL
Sbjct: 578  QGTQAGFMARKQRIEATLGVKVPENDGRRHALTLSVSDYKRRRGLL 623


>ref|XP_009623037.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nicotiana
            tomentosiformis]
          Length = 654

 Score =  604 bits (1558), Expect = e-170
 Identities = 305/403 (75%), Positives = 346/403 (85%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDD+K  ES+ PTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIG+SRSGPI
Sbjct: 254  MDDSDDDKSPESQLPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGPI 313

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDATDP+RQYKL+NKTT+K+LN+VWGN+SSAARWQMAM+SDS PL++EFDQW
Sbjct: 314  YRLCIVRNVDATDPNRQYKLENKTTFKFLNLVWGNDSSAARWQMAMVSDSPPLRDEFDQW 373

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            V+EVERSGG M SKQ+VLEK++AIQK+NTFVYSA TVKQMLQ+KKSATWRPLN+AAEKDR
Sbjct: 374  VKEVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDR 433

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRE+E AKM++DE EVE+IKARLQELE SR+ QEKD KA RLAEMN++NRVENFKNASE
Sbjct: 434  LRREMEVAKMKNDEAEVEKIKARLQELEASRKAQEKDDKARRLAEMNRKNRVENFKNASE 493

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             +PVN  LKAGEAGYDPFSRRWTRS NY+  +     E G +NG+A+AAL V ++NG   
Sbjct: 494  LRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKSANEAAE-GASNGEAAAALAVVDNNGAGG 552

Query: 520  VXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQGA 341
            +                     LVDT APVD GTESN LH+F+LPISLAVLQKFGGPQG+
Sbjct: 553  I-ADGGMEATAAALQAAAGAGKLVDTIAPVDLGTESNTLHDFDLPISLAVLQKFGGPQGS 611

Query: 340  QAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            QAGFMARKQR+EATVGC+VPENDGRRHALTL+VSDYKRRRGLL
Sbjct: 612  QAGFMARKQRIEATVGCRVPENDGRRHALTLSVSDYKRRRGLL 654


>ref|XP_009799534.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nicotiana
            sylvestris]
          Length = 654

 Score =  602 bits (1551), Expect = e-169
 Identities = 303/403 (75%), Positives = 345/403 (85%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDD+K  ES+ PTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIG+SRSGPI
Sbjct: 254  MDDSDDDKSPESQLPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGPI 313

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDATDP+RQYKL+NKTT+K+LN++WGN+SSAARWQMAM+SDS PL++EFDQW
Sbjct: 314  YRLCIVRNVDATDPNRQYKLENKTTFKFLNLIWGNDSSAARWQMAMVSDSPPLRDEFDQW 373

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            V+EVERSGG M SKQ+VLEK++AIQK+NTFVYSA TVKQMLQ+KKSATWRPLN+AAEKDR
Sbjct: 374  VKEVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDR 433

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRE+E AKM++DE EVERIKARLQELE SR+ QEKD KA RLAEMN++NRVENFKNASE
Sbjct: 434  LRREMEVAKMKNDEAEVERIKARLQELEASRKAQEKDDKARRLAEMNRKNRVENFKNASE 493

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             +PVN  LKAGEAGYDPFSRRWTRS NY+ +        G +NG+A+AAL V ++NG   
Sbjct: 494  LRPVNQLLKAGEAGYDPFSRRWTRSTNYF-AKSANEAAVGASNGEAAAALAVVDNNGAGG 552

Query: 520  VXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQGA 341
            +                     LVDT APVD GTESN LH+F+LPISLAVLQKFGGPQG+
Sbjct: 553  I-ADGGMAATAAALQAAAGAGKLVDTIAPVDLGTESNTLHDFDLPISLAVLQKFGGPQGS 611

Query: 340  QAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            QAGF+ARKQR+EATVGC+VPENDGRRHALTL+VSDYKRRRGLL
Sbjct: 612  QAGFIARKQRIEATVGCRVPENDGRRHALTLSVSDYKRRRGLL 654


>ref|XP_010057458.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Eucalyptus
            grandis] gi|629109481|gb|KCW74627.1| hypothetical protein
            EUGRSUZ_E03353 [Eucalyptus grandis]
          Length = 653

 Score =  595 bits (1533), Expect = e-167
 Identities = 301/405 (74%), Positives = 340/405 (83%), Gaps = 2/405 (0%)
 Frame = -2

Query: 1420 MADSDDEK-MSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSG- 1247
            + DSDD++ +  S+T  FED+KEIT+RRSKL KWFMEPFF+ELIVGCFVRVGIG S+S  
Sbjct: 249  LVDSDDDRALLGSETLKFEDVKEITVRRSKLGKWFMEPFFEELIVGCFVRVGIGMSKSRQ 308

Query: 1246 PIYRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFD 1067
            PIYRLC +RNVDA+DPDRQYKL+NK TYKYLNVVWGNESSAARWQMAM+SDS PL+EEF+
Sbjct: 309  PIYRLCIIRNVDASDPDRQYKLENKMTYKYLNVVWGNESSAARWQMAMVSDSPPLEEEFN 368

Query: 1066 QWVREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEK 887
            QWVREVERSGG M SKQ+VLEK++AI+K NTFVYSAATVKQMLQEKKSA+ RP+NIAAEK
Sbjct: 369  QWVREVERSGGRMPSKQDVLEKKEAIKKINTFVYSAATVKQMLQEKKSASSRPMNIAAEK 428

Query: 886  DRLRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNA 707
            DRLRRELE A+ ++DE EV+RIK +LQ+LE +RQ Q+ D+KAI+LAEMN++NRVENFKNA
Sbjct: 429  DRLRRELEIAQYKEDEAEVKRIKEKLQQLEATRQAQKTDAKAIKLAEMNRKNRVENFKNA 488

Query: 706  SEKKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGG 527
            SE KPVNTGLKAGEAGYDPFSRRWTRSRNYY S P GG EAG  N + + A  VA SNG 
Sbjct: 489  SELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPNGGSEAGGANDNVNVASMVAESNGS 548

Query: 526  VPVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQ 347
            VPV                     LVDT APVDQGTESNLLHNFELPISL VL+KFGG Q
Sbjct: 549  VPVVSESGVVATVEALEAAADAGKLVDTNAPVDQGTESNLLHNFELPISLNVLRKFGGAQ 608

Query: 346  GAQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            GA  GFM+RKQR+EATVGC+VPENDGRRH LTLTVSDYKRRRGLL
Sbjct: 609  GALTGFMSRKQRIEATVGCRVPENDGRRHILTLTVSDYKRRRGLL 653


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  593 bits (1528), Expect = e-166
 Identities = 297/404 (73%), Positives = 337/404 (83%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            MADSDD+    S+ PTF+DI+EITIRRSKLAKWFMEP+F+ELIVGCFVRVGIG+S+SGPI
Sbjct: 257  MADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKSGPI 316

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA DPDR YKL+NKTTYKYLNV+WGNESSAARWQMAMISDS+P ++E+ QW
Sbjct: 317  YRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQW 376

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            VREVERSGG M +KQ++LEK++AI+K+NTFVYSAATVKQMLQEKKSA+ RPLN+AAEKDR
Sbjct: 377  VREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDR 436

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE A+ + D+ EVERI+AR+QELE SRQTQ KD+KAIRLAEMN++NR ENF+NASE
Sbjct: 437  LRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENFRNASE 496

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVAN-SNGGV 524
             KPVNT LKAGEAGYDPFSRRWTRSRNYY S P GG+ A  TN +AS  + VAN +    
Sbjct: 497  LKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAA 556

Query: 523  PVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
             V                     LVDT APVDQGTESN LHNFELPISL  LQKFGG QG
Sbjct: 557  GVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQG 616

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            AQAGFMARKQR+EAT+GC+V END +RH LTLTVSDYKRRRGLL
Sbjct: 617  AQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYKRRRGLL 660


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  592 bits (1526), Expect = e-166
 Identities = 313/439 (71%), Positives = 351/439 (79%), Gaps = 4/439 (0%)
 Frame = -2

Query: 1516 KRRSFATATF-NXXXXXXXXXXXXXXXXXXXXGMADSDDEKMS-ESKTPTFEDIKEITIR 1343
            KRRSF  AT  +                    GM DSDD+K S ES+ PTFEDIKEI+IR
Sbjct: 216  KRRSFTAATLGSSPTRGESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIR 275

Query: 1342 RSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPIYRLCRVRNVDATDPDRQYKLDNKTTY 1163
            RSKLAKWFMEPFFDELIVGCFVRVGIG+SRSGPIYRLC VRNVD++DP+RQYKL+NKTT 
Sbjct: 276  RSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGPIYRLCVVRNVDSSDPNRQYKLENKTTS 335

Query: 1162 KYLNVVWGNESSAARWQMAMISDSSPLKEEFDQWVREVERSGGHMLSKQEVLEKRDAIQK 983
            K+LNVVWGNE+SAARWQMAM+SDS PL++EFDQWVREVERSGG M SKQ+VLEK++AIQK
Sbjct: 336  KFLNVVWGNENSAARWQMAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQK 395

Query: 982  TNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDRLRRELEGAKMRDDEVEVERIKARLQE 803
            +NTFVYSA TVKQMLQ+KKSATWRPLN+AAEKDRLRR++E AKM++DE EVERIKARLQE
Sbjct: 396  SNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQE 455

Query: 802  LEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASEKKPVNTGLKAGEAGYDPFSRRWTRSR 623
            L+ SR+ QEKD KA RLAEMN++NRVENFKNASE +PVN  LKAG+AGYDPFSRRWTRS 
Sbjct: 456  LDDSRKVQEKDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRST 515

Query: 622  NYYQSNPGGGEEA-GDTNGD-ASAALEVANSNGGVPVXXXXXXXXXXXXXXXXXXXXXLV 449
            NY+    G  EEA G +NG+ A+AA   A  N G                        LV
Sbjct: 516  NYFAK--GANEEAEGASNGEVAAAAALAAEDNNGASGTADGGMAATAAALQAAAGAGKLV 573

Query: 448  DTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQGAQAGFMARKQRLEATVGCKVPENDG 269
            DT APVDQGTESN LH+F+LPISLAVLQKFGG QG QAGFMARKQR+EATVGC VPENDG
Sbjct: 574  DTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDG 633

Query: 268  RRHALTLTVSDYKRRRGLL 212
            RRHALTL+VSDYKRRRGLL
Sbjct: 634  RRHALTLSVSDYKRRRGLL 652


>ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Vitis
            vinifera]
          Length = 658

 Score =  592 bits (1525), Expect = e-166
 Identities = 301/404 (74%), Positives = 332/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDD++   S  PTFEDIK ITIRRSKLAKWFMEPFF+ELIVGCFVRVGIGKSRSGPI
Sbjct: 255  MVDSDDDRGIGSDVPTFEDIKSITIRRSKLAKWFMEPFFEELIVGCFVRVGIGKSRSGPI 314

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA+DPDR Y+L+NKTTYKYLN VWGNE+S+ARWQMAM+SDS PL EEF+QW
Sbjct: 315  YRLCMVRNVDASDPDRHYQLENKTTYKYLNCVWGNENSSARWQMAMVSDSGPLMEEFNQW 374

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            V+EVERSG  ML+KQ++LEKR+AIQKTN FVYSAAT KQMLQEKKS + RPLNI AEKDR
Sbjct: 375  VKEVERSGSRMLTKQDILEKREAIQKTNMFVYSAATGKQMLQEKKSVSSRPLNIVAEKDR 434

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRE+E A  + D+ EVERI  RLQ+LE SR+++EKD+KAIRLAEMN++NR ENFKNASE
Sbjct: 435  LRREMEVALSKHDQAEVERINTRLQQLEASRRSKEKDAKAIRLAEMNRKNRAENFKNASE 494

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGD-TNGDASAALEVANSNGGV 524
             K VNT LKAGEAGYDPFSRRWTRSRNYY S PGGG+EA    NG+A AA   A SNG  
Sbjct: 495  SKRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGGDEAAAVANGEAPAAFVGAGSNGTG 554

Query: 523  PVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
                                   LVDT APVDQGTESN LH+FELPISLA LQKFGGPQG
Sbjct: 555  GKGAEVGVAATAAALEAAADAGKLVDTSAPVDQGTESNTLHDFELPISLAGLQKFGGPQG 614

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            A AGFMARKQR+EATVGC+VPENDGRRHALTLTV DYKRRRGLL
Sbjct: 615  ALAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYKRRRGLL 658


>emb|CDO99584.1| unnamed protein product [Coffea canephora]
          Length = 631

 Score =  591 bits (1523), Expect = e-166
 Identities = 312/436 (71%), Positives = 341/436 (78%), Gaps = 1/436 (0%)
 Frame = -2

Query: 1516 KRRSFATATFNXXXXXXXXXXXXXXXXXXXXGMADSDDEKMS-ESKTPTFEDIKEITIRR 1340
            KRR F  AT                      GMADSD++K S ESK PT+EDIKEITIRR
Sbjct: 202  KRRPFTAATIGSPTRSGSASHSDEEESTGDGGMADSDEDKTSAESKWPTYEDIKEITIRR 261

Query: 1339 SKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPIYRLCRVRNVDATDPDRQYKLDNKTTYK 1160
            SKLAKWFMEPFF++LIVGCFVRVGIGK+R GPIYRLC VRNVD +DPDR YKLDNKTTYK
Sbjct: 262  SKLAKWFMEPFFEDLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYK 321

Query: 1159 YLNVVWGNESSAARWQMAMISDSSPLKEEFDQWVREVERSGGHMLSKQEVLEKRDAIQKT 980
            YLNVVWGNE+SAARWQMAMISDS P KEE+DQWVREVERSGG M SK EVLEK++AIQKT
Sbjct: 322  YLNVVWGNENSAARWQMAMISDSPPAKEEYDQWVREVERSGGRMPSKLEVLEKKEAIQKT 381

Query: 979  NTFVYSAATVKQMLQEKKSATWRPLNIAAEKDRLRRELEGAKMRDDEVEVERIKARLQEL 800
            N+FVYSA TVKQMLQEKKSATWRPLN+AAEKDRLR E+E AK+ +DE+EVERIKARLQEL
Sbjct: 382  NSFVYSAETVKQMLQEKKSATWRPLNVAAEKDRLRTEMEVAKINNDELEVERIKARLQEL 441

Query: 799  EVSRQTQEKDSKAIRLAEMNKRNRVENFKNASEKKPVNTGLKAGEAGYDPFSRRWTRSRN 620
            E SRQ  E D KAIRLAEMN++NRVENFKNAS  KPVN  LKAGEAGYDPFSRRWTRSRN
Sbjct: 442  EASRQAHEMDKKAIRLAEMNRKNRVENFKNASGLKPVNASLKAGEAGYDPFSRRWTRSRN 501

Query: 619  YYQSNPGGGEEAGDTNGDASAALEVANSNGGVPVXXXXXXXXXXXXXXXXXXXXXLVDTR 440
            YY  NP  G EA   +G+A+AA  V N NG   V                     LVDT 
Sbjct: 502  YYVKNPIDG-EATAADGEATAASAVNNRNGTAVV-----STEMGKAATATADDGKLVDTS 555

Query: 439  APVDQGTESNLLHNFELPISLAVLQKFGGPQGAQAGFMARKQRLEATVGCKVPENDGRRH 260
            APVDQG ESN+LH F+L I+L  L+ FGG +GAQAGFMARKQR+EATVGC+VPENDGRRH
Sbjct: 556  APVDQGRESNMLHGFKLEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRH 615

Query: 259  ALTLTVSDYKRRRGLL 212
            ALTLTVSDYKRR GLL
Sbjct: 616  ALTLTVSDYKRRMGLL 631


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            lycopersicum]
          Length = 645

 Score =  591 bits (1523), Expect = e-166
 Identities = 306/404 (75%), Positives = 337/404 (83%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMS-ESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGP 1244
            M DSDD+K S ES+ PTFEDIKEI+IRRSKLAKWFMEPFFDELIVGCFVRVGIG+SRSGP
Sbjct: 249  MDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGP 308

Query: 1243 IYRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQ 1064
            IYRLC VRNVDA+DP+RQYKL+NKTT K+LNVVWGNE+SAARWQMAMISDS PL++EFDQ
Sbjct: 309  IYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAARWQMAMISDSPPLRDEFDQ 368

Query: 1063 WVREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKD 884
            WVREVERSGG M SKQ+VLEK++AIQK+NTFVYSA TVKQMLQ+KKSATWRPLN+AAEKD
Sbjct: 369  WVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKD 428

Query: 883  RLRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNAS 704
            RLRR++E AKM++DE EVERIKARLQELE SR+ QEKD KA RLAEMN++NRVENFKNAS
Sbjct: 429  RLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKARRLAEMNRKNRVENFKNAS 488

Query: 703  EKKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGV 524
            E +PVN  LKAGEAGYDPFSRRWTRS NY+      GE A      A+AAL  A  N G 
Sbjct: 489  ELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAA------AAAAL-AAEDNNGA 541

Query: 523  PVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
                                   LVDT APVDQGTESN LH+F+LPISLAVLQKFGG QG
Sbjct: 542  GGTADGGMAATAAALQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQG 601

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
             QAGFMARKQR+EATVGC VPENDGRRHALTL+VSDYKRRRGLL
Sbjct: 602  GQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDYKRRRGLL 645


>ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha
            curcas] gi|643703874|gb|KDP20938.1| hypothetical protein
            JCGZ_21409 [Jatropha curcas]
          Length = 658

 Score =  585 bits (1509), Expect = e-164
 Identities = 291/404 (72%), Positives = 341/404 (84%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            MADSD+++   S+  T++DI+E+TIRRSKLAKW MEP+F+ELIVGCFVRVGIG+S+SGPI
Sbjct: 257  MADSDEDREPGSEGLTYDDIREVTIRRSKLAKWLMEPWFEELIVGCFVRVGIGRSKSGPI 316

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA DPDR YKL+NKTTYKYLNV+WGNESSAARWQMAM+SDS+P ++E+ QW
Sbjct: 317  YRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMVSDSAPTEDEYKQW 376

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            VREVERSGG M +KQ++LEK++AI+K+NTFVYSAATVKQMLQEKKSA+ RPLN+AAEKDR
Sbjct: 377  VREVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDR 436

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE A+M+ D+ EVERI+AR+QELE SRQ QEKD+KAIRLAEMN++NR ENF+NASE
Sbjct: 437  LRRELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASE 496

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             KPVNT LKAGEAGYDPFSRRWTRSRNYY S PGG + A + N + +AA  VA+SNG   
Sbjct: 497  LKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAA--VAHSNGAAT 554

Query: 520  -VXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
                                   LVDT APVDQGTESN LH+F+LPISL  L+KFGG +G
Sbjct: 555  GTLAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHDFDLPISLTALEKFGGAKG 614

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            A+AGFMARKQ++EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 615  AKAGFMARKQQIEATVGCRVPENDGRRHALTLTVSDYKRRRGLL 658


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  584 bits (1506), Expect = e-164
 Identities = 297/405 (73%), Positives = 341/405 (84%), Gaps = 2/405 (0%)
 Frame = -2

Query: 1420 MADSDDEK-MSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGP 1244
            + DSDD++ ++ S+ P+F+D+KEITIRRSKLAKWFMEPFF+ELIVGCFVRVGIG+S++GP
Sbjct: 254  IVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGP 313

Query: 1243 IYRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQ 1064
            IYRLC V+NVDA++PDRQYKL+NKTTYKYLNVVWGNESSAARWQMAM+SDS+PL+EEF Q
Sbjct: 314  IYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQ 373

Query: 1063 WVREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKD 884
            WV+EV+RSGG M SKQ+VLEK+ AIQK  TFVYSAATVKQMLQEKKSA+ RPLN+AAEKD
Sbjct: 374  WVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKD 433

Query: 883  RLRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNAS 704
            RLRRELE A+ + DE EVERIK RL ELE SRQ ++KD+KA++LAEMN++NR ENFKNAS
Sbjct: 434  RLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKLAEMNRKNRFENFKNAS 493

Query: 703  EKKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNG-G 527
            E KPVNTGLKAGEAGYDPFSRRWTRSRNYY + P  GE+A   N   +  +  A SNG G
Sbjct: 494  EMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKP--GEKAAAGNNSVNGNVAGAGSNGTG 551

Query: 526  VPVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQ 347
             PV                     LVDT APVDQGTESN+LHNFELPISLA+LQKFGG Q
Sbjct: 552  APVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQ 611

Query: 346  GAQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            GAQAGFMARKQ++EATVG +V ENDGRRHALTLTVSDYKRRRGLL
Sbjct: 612  GAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656


>ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Gossypium
            raimondii] gi|763802543|gb|KJB69481.1| hypothetical
            protein B456_011G025800 [Gossypium raimondii]
            gi|763802544|gb|KJB69482.1| hypothetical protein
            B456_011G025800 [Gossypium raimondii]
            gi|763802545|gb|KJB69483.1| hypothetical protein
            B456_011G025800 [Gossypium raimondii]
          Length = 660

 Score =  581 bits (1498), Expect = e-163
 Identities = 295/404 (73%), Positives = 333/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKT-PTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGP 1244
            M DS+DE+ +     PTF DIKEITIRRSKLAKW MEPFF+ELIVGCFVRVGIG+S++G 
Sbjct: 257  MVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKTGA 316

Query: 1243 IYRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQ 1064
            IYRLC VRNVDATDPDR YKL+NKTTYKYLNVVWGNESSAARWQMAMISDS PL+EEF Q
Sbjct: 317  IYRLCMVRNVDATDPDRTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPLEEEFRQ 376

Query: 1063 WVREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKD 884
             +REVERSGG M SKQ+VLEK++A+QK  TFVYSAATVKQMLQEKKS++ RPLN+AAEKD
Sbjct: 377  LIREVERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSSSSRPLNVAAEKD 436

Query: 883  RLRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNAS 704
            RLRR+LE A+ + D+VEVERIK RLQ+LE SRQ+QEKD+KA+RLAEMN++NRVENFKNAS
Sbjct: 437  RLRRDLEIAQSKHDDVEVERIKKRLQQLEASRQSQEKDAKAVRLAEMNRKNRVENFKNAS 496

Query: 703  EKKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGV 524
              KPVNTGLKAGEAGYDPFSRRWTRSRNYY +   GG+ A   NGD + A+   N N   
Sbjct: 497  GLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAKAPGGDAAAVANGDTNGAIGSGNGNDAG 556

Query: 523  PVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
                                   LVDT APVD+GTESN+LH+FELPISL VL+KFGG +G
Sbjct: 557  AAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTESNMLHDFELPISLDVLRKFGGHEG 616

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            A AGFMARKQR+EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 617  AVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRRGLL 660


>ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  581 bits (1497), Expect = e-163
 Identities = 299/404 (74%), Positives = 334/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDDE+   S+  TF+DIKEITIRRSKLAKWFMEPFF+ELIVGCFVRVGIG+S+SG I
Sbjct: 257  MIDSDDER---SEGLTFDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGAI 313

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA+DPDRQYKL+NKTT+KYLNVVWGNE+SAARWQMAMISDS+PL+EEF QW
Sbjct: 314  YRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQW 373

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            +REVERSGG + SK++VLEK++AI+KTN+FVYSAATVKQM+QEKKSA+ RPLNIA EKDR
Sbjct: 374  IREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDR 433

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE AK + D+ EVERI+ RLQ+LE  RQ+Q KDSKAIRLAEMN++NRVENFKNASE
Sbjct: 434  LRRELEVAKSKQDDAEVERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASE 493

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             KP N GLKAGEAGYDPFSRRWTRSRNYY S PG  +E  +    A  AL    SNG   
Sbjct: 494  LKPKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAV 553

Query: 520  V-XXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
            V                      L+DT APVD GTESNL HNFELPISLA LQKFGGPQG
Sbjct: 554  VGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLKHNFELPISLAALQKFGGPQG 613

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            AQ GF+ARKQR+EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 614  AQKGFLARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRGLL 657


>ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Malus
            domestica]
          Length = 657

 Score =  581 bits (1497), Expect = e-163
 Identities = 299/404 (74%), Positives = 334/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDDE+   S+  TF+DIKEITIRRSKLAKWFMEPFF+ELIVGCFVRVGIG+S+SG I
Sbjct: 257  MIDSDDER---SEGLTFDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGAI 313

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA+DPDRQYKL+NKTT+KYLNVVWGNE+SAARWQMAMISDS+PL+EEF QW
Sbjct: 314  YRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQW 373

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            +REVERSGG + SK++VLEK++AI+KTN+FVYSAATVKQM+QEKKSA+ RPLNIA EKDR
Sbjct: 374  IREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDR 433

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE AK + D+ EVERI+ RLQ+LE  RQ+Q KDSKAIRLAEMN++NRVENFKNASE
Sbjct: 434  LRRELEVAKSKQDDAEVERIETRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASE 493

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             KP N GLKAGEAGYDPFSRRWTRSRNYY S PG  +E  +    A  AL    SNG   
Sbjct: 494  LKPKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAV 553

Query: 520  V-XXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
            V                      L+DT APVD GTESNL HNFELPISLA LQKFGGPQG
Sbjct: 554  VGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLKHNFELPISLAALQKFGGPQG 613

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            AQ GF+ARKQR+EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 614  AQKGFLARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRGLL 657


>ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            RTF1 homolog [Prunus mume]
          Length = 648

 Score =  580 bits (1496), Expect = e-163
 Identities = 297/404 (73%), Positives = 335/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDDE+   S+  TF+DIKEITIRRSKLAKW MEPFF+ELIVGCFVRVGIG+S+SGPI
Sbjct: 248  MMDSDDER---SEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPI 304

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA+DPDR+YKL+NKTT+KYLNVVWGNE+SAARWQMAMISDS+P++EEF QW
Sbjct: 305  YRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPVEEEFKQW 364

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            VREVERSGG + SKQ+VLEK++AI+K NTFVYSAATVKQM++EKKSA+ RPLNIA EKDR
Sbjct: 365  VREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDR 424

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE A+ + D+ EV+RIK RLQ+LE  RQ+Q KDSKA+RLAEMN++NRVENFKNASE
Sbjct: 425  LRRELEVAQSKHDDAEVDRIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASE 484

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             KPV TGLKAGEAGYDPFSRRWTRSRNYY S PG  +   +   DA  AL    SNG   
Sbjct: 485  LKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAV 544

Query: 520  V-XXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
            V                      L+DT APVD GTESNL+HNFELPISLA LQKFGGPQG
Sbjct: 545  VGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQG 604

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            AQ GF+ARKQR+EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 605  AQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRRGLL 648


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  580 bits (1496), Expect = e-163
 Identities = 298/404 (73%), Positives = 334/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDDE+   S+  TF+DIKEITIRRSKLAKW MEPFF+ELIVGCFVRVGIG+S+SGPI
Sbjct: 246  MMDSDDER---SEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPI 302

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA+DPDR+YKL+NKTT+KYLNVVWGNE+SAARWQMAMISDS+PL+EEF QW
Sbjct: 303  YRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQW 362

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            VREVERSGG + SKQ+VLEK++AI+K NTFVYSAATVKQM++EKKSA+ RPLNIA EKDR
Sbjct: 363  VREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDR 422

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE A+ + D+ EVERIK RLQ+LE  RQ+Q KDSKA+RLAEMN++NRVENFKNASE
Sbjct: 423  LRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASE 482

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             KPV TGLKAGEAGYDPFSRRWTRSRNYY S PG  +   +   DA  AL    SNG   
Sbjct: 483  LKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAV 542

Query: 520  V-XXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
            V                      L+DT APVD GTESNL+HNFELPISLA LQKFGGPQG
Sbjct: 543  VGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQG 602

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            AQ GF+ARKQR+EATVGC+VPENDGRRHALTLTVSDYKRR GLL
Sbjct: 603  AQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRMGLL 646


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  579 bits (1492), Expect = e-162
 Identities = 294/404 (72%), Positives = 330/404 (81%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEK-MSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGP 1244
            M DSDD++ M     PTF+DIKEITIRRSKLAKWFMEPFF+ELIVGC+VRVGIG+S+SGP
Sbjct: 258  MVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSGP 317

Query: 1243 IYRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQ 1064
            IYRLC VRNVDAT+P+R YKL+NKTTYKYLNVVWGNESSAARWQMAMISDS P +EEF Q
Sbjct: 318  IYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQ 377

Query: 1063 WVREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKD 884
             +RE+ERSGG M SKQ+VLEK++A+QK  TFVYSAATVKQMLQEKKS + RPLNIAAEKD
Sbjct: 378  LIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKD 437

Query: 883  RLRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNAS 704
            RLRR+LE A+ + DE EVERIK RLQ+LE SRQ QEKD+KA+RLAEMN++NR ENFKNAS
Sbjct: 438  RLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNAS 497

Query: 703  EKKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGV 524
            E KPVNTGLKAGEAGYDPFSRRWTRSRNYY + P G + A   NGD    +   N N   
Sbjct: 498  ELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNGN-DA 556

Query: 523  PVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
                                   LVDT APVD+GTESN+LH+FE+PISL  LQ+FGGPQG
Sbjct: 557  RAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQG 616

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            A AGFMARKQR+EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 617  AVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRGLL 660


>ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  577 bits (1488), Expect = e-162
 Identities = 297/404 (73%), Positives = 334/404 (82%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1420 MADSDDEKMSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGPI 1241
            M DSDDE+   S+  TF+DIKEITIRRSKLAKWFMEPFF+ELIVGCFVRVGIG+S+SG I
Sbjct: 257  MIDSDDER---SEGLTFDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGAI 313

Query: 1240 YRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQW 1061
            YRLC VRNVDA+DPDRQYKL+NKTT+KYLNVVWGNE+SAARWQMAMISDS+PL+EEF QW
Sbjct: 314  YRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQW 373

Query: 1060 VREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKDR 881
            +REVERSGG + SK++VLEK++AI+KTN+FVYSAATVKQM+QEKKSA+ RPLNIA EKDR
Sbjct: 374  IREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDR 433

Query: 880  LRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNASE 701
            LRRELE AK + D+ EVERI+ RLQ+LE  RQ+Q KDSKAIRLAEMN++NRVENFKNASE
Sbjct: 434  LRRELEVAKSKQDDAEVERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASE 493

Query: 700  KKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGGGEEAGDTNGDASAALEVANSNGGVP 521
             KP N GLKAGEAGYDPFSRRWTRSRNYY S PG  +E  +    A  AL    SNG   
Sbjct: 494  LKPKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALVDIESNGTAV 553

Query: 520  V-XXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQG 344
            V                      L+DT AP+D GTESNL H+FELPISLA LQKFGGPQG
Sbjct: 554  VGAVRAGMAATAAALEAAAGAGKLIDTSAPLDFGTESNLKHDFELPISLAALQKFGGPQG 613

Query: 343  AQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            AQ GF+ARKQR+EATVGC+VPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 614  AQKGFLARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRRGLL 657


>ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
            gi|587894274|gb|EXB82802.1| RNA polymerase-associated
            protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  576 bits (1485), Expect = e-161
 Identities = 292/405 (72%), Positives = 337/405 (83%), Gaps = 2/405 (0%)
 Frame = -2

Query: 1420 MADSDDEK-MSESKTPTFEDIKEITIRRSKLAKWFMEPFFDELIVGCFVRVGIGKSRSGP 1244
            M DSDDE+ +  S+  TF+DIKE+T+RRSKLAKW MEPFF+ELIVGCFVRVGIG+S+SGP
Sbjct: 254  MIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGP 313

Query: 1243 IYRLCRVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESSAARWQMAMISDSSPLKEEFDQ 1064
            IYRLC VRNVDA++PDRQYKLDNK T+KYLNVVWGNE+SAARWQMAM+SDS P +EEF Q
Sbjct: 314  IYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARWQMAMVSDSVPNEEEFKQ 373

Query: 1063 WVREVERSGGHMLSKQEVLEKRDAIQKTNTFVYSAATVKQMLQEKKSATWRPLNIAAEKD 884
            WVREVERSGG M +K ++L+K+++I+K NTFVYSAATVKQMLQEKKSA+ RPLNIA EKD
Sbjct: 374  WVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQEKKSASARPLNIALEKD 433

Query: 883  RLRRELEGAKMRDDEVEVERIKARLQELEVSRQTQEKDSKAIRLAEMNKRNRVENFKNAS 704
            RLRRELE A+ ++DEVEV+RIK RLQELE SR+ ++ D+KAIRLAEMN++NRVENFKNAS
Sbjct: 434  RLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIRLAEMNRKNRVENFKNAS 493

Query: 703  EKKPVNTGLKAGEAGYDPFSRRWTRSRNYYQSNPGG-GEEAGDTNGDASAALEVANSNGG 527
            E KPVNTGLKAGEAGYDPFSRRWTRSRNYY   PG   E++G   G+  A+ +  N+   
Sbjct: 494  ELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSGANAGNNGASTDAENNGRH 553

Query: 526  VPVXXXXXXXXXXXXXXXXXXXXXLVDTRAPVDQGTESNLLHNFELPISLAVLQKFGGPQ 347
              V                     LVDT APVDQGT SN+LHNFELPISL+VLQKFGGPQ
Sbjct: 554  GIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQ 613

Query: 346  GAQAGFMARKQRLEATVGCKVPENDGRRHALTLTVSDYKRRRGLL 212
            GAQAGFMARKQR+EATVGC+VPENDGRRHALTL+V DYKRRRGLL
Sbjct: 614  GAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYKRRRGLL 658