BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00011526
         (3713 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1683   0.0  
ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1658   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythra...  1630   0.0  
ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1553   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1531   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1530   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1527   0.0  
ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic...  1526   0.0  
ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1504   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]      1489   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1456   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1453   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1451   0.0  
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1447   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1446   0.0  
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1441   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1439   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1437   0.0  
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...  1434   0.0  
ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1432   0.0  

>ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 952

 Score = 1683 bits (4358), Expect = 0.0
 Identities = 819/952 (86%), Positives = 883/952 (92%)
 Frame = -3

Query: 3498 MSPSELPIFCENPYLSSYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQL 3319
            MS  E+P F ++P  SS  FP TLKLPS+ N APLL PP+SD  DD++    + LS LQ+
Sbjct: 1    MSTPEIPSFSQSPQFSSSPFPQTLKLPSIHNPAPLLPPPISDCTDDSFPGKPEKLSTLQV 60

Query: 3318 IPNGFSSNLTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRR 3139
            +PNGF SNLTK SS R FIQDPPW+SSL+MK+LLFRS+N+S VKIE+QE ERRKYYLLRR
Sbjct: 61   MPNGFQSNLTKESSGRGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRR 120

Query: 3138 RQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRT 2959
            RQIK ETEAWENMVEEY+ELEREMCEKKLAPNLPYVKKLILGWFEPLR AIEKEQ S R+
Sbjct: 121  RQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRS 180

Query: 2958 KKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRI 2779
            KK K AFAPFIDALPADKMAVIVMHKIM LLMMGGK+DRCVRVVEAA+QIGVAIEHEVRI
Sbjct: 181  KKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRI 240

Query: 2778 HSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGR 2599
            H+FLEK++K QR++ V E++  S KEA +LRKRVKSLIRRNRV+EVQKLVRNEE KSW R
Sbjct: 241  HNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSR 300

Query: 2598 DTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVI 2419
            DTQAKLGCCLIELLT +AYVQPPVNQSADSPPDVRPAFRH FKIA RE GQN+VK+YGVI
Sbjct: 301  DTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVI 360

Query: 2418 ECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVR 2239
            ECDPLVLTGLD+TVKHMIIPYVPMLVPPKKWKGYDKGGY FLPSYLMRTHGSR+QQ AV+
Sbjct: 361  ECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAVK 420

Query: 2238 TVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLSDD 2059
            TVP KQMQKVYEALDTLGNTKWRVNKRIL VVE IWA GGNIAGLVNREDVPIPELLSDD
Sbjct: 421  TVPPKQMQKVYEALDTLGNTKWRVNKRILSVVECIWAAGGNIAGLVNREDVPIPELLSDD 480

Query: 2058 LEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMH 1879
             + VK+WKWSVRK KKIN+ERHSQRCD ELKL+VARK+KDEEGFYYPHNLDFRGRAYPMH
Sbjct: 481  AKEVKKWKWSVRKVKKINQERHSQRCDTELKLNVARKMKDEEGFYYPHNLDFRGRAYPMH 540

Query: 1878 PHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLW 1699
            PHLNHLSSD+CRGILEFA+GRPLGKSGL WLKIHLANLYGGGVEKLSYDGR+SFVEN++ 
Sbjct: 541  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRLSFVENNIA 600

Query: 1698 DIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQ 1519
            +IFDSAD  LNGNRWWL AEDPFQCLAACINL+EALKSSSPHTV+SHLPIHQDGSCNGLQ
Sbjct: 601  EIFDSADNSLNGNRWWLKAEDPFQCLAACINLAEALKSSSPHTVISHLPIHQDGSCNGLQ 660

Query: 1518 HYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLG 1339
            HYAALGRDSFEAAAVNL+AG+KPADVYSEIA RVH IMK+DS KDPAT+P+AL+AKLL+ 
Sbjct: 661  HYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIS 720

Query: 1338 QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGE 1159
            QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGE
Sbjct: 721  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGE 780

Query: 1158 LFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 979
            LFQAARAIMGWLGDCAKIIASENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE
Sbjct: 781  LFQAARAIMGWLGDCAKIIASENQPVCWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 840

Query: 978  GDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQI 799
            GDSVEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVDRMNQI
Sbjct: 841  GDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDRMNQI 900

Query: 798  LRQKFVDLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            LR+KFVDLY++P+LENLLESF+T YP L+FPPLP RGDF+LEKV+ESPYFFN
Sbjct: 901  LREKFVDLYSMPILENLLESFQTSYPMLTFPPLPNRGDFDLEKVIESPYFFN 952


>ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Erythranthe
            guttatus]
          Length = 953

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 806/953 (84%), Positives = 878/953 (92%), Gaps = 1/953 (0%)
 Frame = -3

Query: 3498 MSPSELPIFCENPYLSSYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQL 3319
            MS  E PI  ++P  SS SFP  LKLPSL N A LL PP+SDS+DDN+  +   ++ LQ+
Sbjct: 1    MSTPEAPILSQSPQFSSSSFPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQV 60

Query: 3318 IPNGFSSNLTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRR 3139
            IPNGF SN TK S  RVFIQDPPW+SSLFMKNLLFRSRN+ GVKIE+QEMERRKYYLLRR
Sbjct: 61   IPNGFPSNFTKESKDRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRR 120

Query: 3138 RQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRT 2959
            RQ+K ETEAWEN VEEY+ELEREMCEKKLAPNLPYVKKLILGWFEPLR AIEKEQ + R+
Sbjct: 121  RQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRS 180

Query: 2958 KKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRI 2779
            KK+K AFAPFIDALPADKMAVIVMHK+MGLLMMGGK+DRCVRVVEAA+QIGVA+E+EVRI
Sbjct: 181  KKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRI 240

Query: 2778 HSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGR 2599
            HSFLEK +K ++R+I DESQ  SS EA+++RKRVKSLI+RNRV+EV KLVR+EEFKSWGR
Sbjct: 241  HSFLEKMKKNEKREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGR 300

Query: 2598 DTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVI 2419
            D QAKLGCCLIELLT +AYVQPPVNQSADSPPDVRPAFRH+FKIATR PGQ +VKRYGVI
Sbjct: 301  DIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVI 360

Query: 2418 ECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVR 2239
            ECDPLVL GLD+TVKHMIIPYVPMLVPPKKWKGYD+GGY FLPSYLMRTHGSR QQDAV+
Sbjct: 361  ECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVK 420

Query: 2238 TVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELL-SD 2062
            TV  KQMQKVYEALDTLGNTKWRVNKRIL VVE+IWA GGNIAGLVNRED+PIPELL S+
Sbjct: 421  TVTSKQMQKVYEALDTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSE 480

Query: 2061 DLEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPM 1882
            D++  K+WKWSVRK KKIN+ERHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPM
Sbjct: 481  DMKEAKKWKWSVRKVKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 540

Query: 1881 HPHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHL 1702
            HPHLNHLSSD+CRG+LEFA+GRPLGKSGL WLKIH+ANLYGGGVEKLSYD R++FVEN++
Sbjct: 541  HPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNI 600

Query: 1701 WDIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGL 1522
             +IFDSAD  LNGNRWWL AEDPFQCLAACINL EALKS SPHTV+SHLPIHQDGSCNGL
Sbjct: 601  SEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGL 660

Query: 1521 QHYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLL 1342
            QHYAALGRDSFEAAAVNLVAG+KP+DVYSEIA RVH IMK+DS KDP T+ +AL+AK+L+
Sbjct: 661  QHYAALGRDSFEAAAVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLI 720

Query: 1341 GQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALG 1162
            GQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDD+LLFSAACYAAKVTLAALG
Sbjct: 721  GQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALG 780

Query: 1161 ELFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQR 982
            ELFQAARAIM WLGDCAKIIASEN+PV WTTPLGLPVVQPYFK+QRHVIRTSLQVLALQR
Sbjct: 781  ELFQAARAIMAWLGDCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQR 840

Query: 981  EGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQ 802
            EGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQ
Sbjct: 841  EGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQ 900

Query: 801  ILRQKFVDLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            ILRQKFVDLY++P+LENLLESFET YP L FPPLP RGDF LE+V+ESPYFFN
Sbjct: 901  ILRQKFVDLYSMPILENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 953


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
          Length = 941

 Score = 1630 bits (4221), Expect = 0.0
 Identities = 797/953 (83%), Positives = 868/953 (91%), Gaps = 1/953 (0%)
 Frame = -3

Query: 3498 MSPSELPIFCENPYLSSYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQL 3319
            MS  E PI  ++P  SS SFP  LKLPSL N A LL PP+SDS+DDN+  +   ++ LQ 
Sbjct: 1    MSTPEAPILSQSPQFSSSSFPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQ- 59

Query: 3318 IPNGFSSNLTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRR 3139
                        S  RVFIQDPPW+SSLFMKNLLFRSRN+ GVKIE+QEMERRKYYLLRR
Sbjct: 60   -----------ESKDRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRR 108

Query: 3138 RQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRT 2959
            RQ+K ETEAWEN VEEY+ELEREMCEKKLAPNLPYVKKLILGWFEPLR AIEKEQ + R+
Sbjct: 109  RQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRS 168

Query: 2958 KKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRI 2779
            KK+K AFAPFIDALPADKMAVIVMHK+MGLLMMGGK+DRCVRVVEAA+QIGVA+E+EVRI
Sbjct: 169  KKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRI 228

Query: 2778 HSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGR 2599
            HSFLEK +K ++R+I DESQ  SS EA+++RKRVKSLI+RNRV+EV KLVR+EEFKSWGR
Sbjct: 229  HSFLEKMKKNEKREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGR 288

Query: 2598 DTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVI 2419
            D QAKLGCCLIELLT +AYVQPPVNQSADSPPDVRPAFRH+FKIATR PGQ +VKRYGVI
Sbjct: 289  DIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVI 348

Query: 2418 ECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVR 2239
            ECDPLVL GLD+TVKHMIIPYVPMLVPPKKWKGYD+GGY FLPSYLMRTHGSR QQDAV+
Sbjct: 349  ECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVK 408

Query: 2238 TVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELL-SD 2062
            TV  KQMQKVYEALDTLGNTKWRVNKRIL VVE+IWA GGNIAGLVNRED+PIPELL S+
Sbjct: 409  TVTSKQMQKVYEALDTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSE 468

Query: 2061 DLEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPM 1882
            D++  K+WKWSVRK KKIN+ERHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPM
Sbjct: 469  DMKEAKKWKWSVRKVKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 528

Query: 1881 HPHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHL 1702
            HPHLNHLSSD+CRG+LEFA+GRPLGKSGL WLKIH+ANLYGGGVEKLSYD R++FVEN++
Sbjct: 529  HPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNI 588

Query: 1701 WDIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGL 1522
             +IFDSAD  LNGNRWWL AEDPFQCLAACINL EALKS SPHTV+SHLPIHQDGSCNGL
Sbjct: 589  SEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGL 648

Query: 1521 QHYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLL 1342
            QHYAALGRDSFEAAAVNLVAG+KP+DVYSEIA RVH IMK+DS KDP T+ +AL+AK+L+
Sbjct: 649  QHYAALGRDSFEAAAVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLI 708

Query: 1341 GQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALG 1162
            GQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDD+LLFSAACYAAKVTLAALG
Sbjct: 709  GQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALG 768

Query: 1161 ELFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQR 982
            ELFQAARAIM WLGDCAKIIASEN+PV WTTPLGLPVVQPYFK+QRHVIRTSLQVLALQR
Sbjct: 769  ELFQAARAIMAWLGDCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQR 828

Query: 981  EGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQ 802
            EGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQ
Sbjct: 829  EGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQ 888

Query: 801  ILRQKFVDLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            ILRQKFVDLY++P+LENLLESFET YP L FPPLP RGDF LE+V+ESPYFFN
Sbjct: 889  ILRQKFVDLYSMPILENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 941


>ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
            [Sesamum indicum]
          Length = 884

 Score = 1553 bits (4021), Expect = 0.0
 Identities = 760/883 (86%), Positives = 817/883 (92%)
 Frame = -3

Query: 3498 MSPSELPIFCENPYLSSYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQL 3319
            MS  E+P F ++P  SS  FP TLKLPS+ N APLL PP+SD  DD++    + LS LQ+
Sbjct: 1    MSTPEIPSFSQSPQFSSSPFPQTLKLPSIHNPAPLLPPPISDCTDDSFPGKPEKLSTLQV 60

Query: 3318 IPNGFSSNLTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRR 3139
            +PNGF SNLTK SS R FIQDPPW+SSL+MK+LLFRS+N+S VKIE+QE ERRKYYLLRR
Sbjct: 61   MPNGFQSNLTKESSGRGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRR 120

Query: 3138 RQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRT 2959
            RQIK ETEAWENMVEEY+ELEREMCEKKLAPNLPYVKKLILGWFEPLR AIEKEQ S R+
Sbjct: 121  RQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRS 180

Query: 2958 KKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRI 2779
            KK K AFAPFIDALPADKMAVIVMHKIM LLMMGGK+DRCVRVVEAA+QIGVAIEHEVRI
Sbjct: 181  KKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRI 240

Query: 2778 HSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGR 2599
            H+FLEK++K QR++ V E++  S KEA +LRKRVKSLIRRNRV+EVQKLVRNEE KSW R
Sbjct: 241  HNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSR 300

Query: 2598 DTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVI 2419
            DTQAKLGCCLIELLT +AYVQPPVNQSADSPPDVRPAFRH FKIA RE GQN+VK+YGVI
Sbjct: 301  DTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVI 360

Query: 2418 ECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVR 2239
            ECDPLVLTGLD+TVKHMIIPYVPMLVPPKKWKGYDKGGY FLPSYLMRTHGSR+QQ AV+
Sbjct: 361  ECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAVK 420

Query: 2238 TVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLSDD 2059
            TVP KQMQKVYEALDTLGNTKWRVNKRIL VVE IWA GGNIAGLVNREDVPIPELLSDD
Sbjct: 421  TVPPKQMQKVYEALDTLGNTKWRVNKRILSVVECIWAAGGNIAGLVNREDVPIPELLSDD 480

Query: 2058 LEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMH 1879
             + VK+WKWSVRK KKIN+ERHSQRCD ELKL+VARK+KDEEGFYYPHNLDFRGRAYPMH
Sbjct: 481  AKEVKKWKWSVRKVKKINQERHSQRCDTELKLNVARKMKDEEGFYYPHNLDFRGRAYPMH 540

Query: 1878 PHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLW 1699
            PHLNHLSSD+CRGILEFA+GRPLGKSGL WLKIHLANLYGGGVEKLSYDGR+SFVEN++ 
Sbjct: 541  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRLSFVENNIA 600

Query: 1698 DIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQ 1519
            +IFDSAD  LNGNRWWL AEDPFQCLAACINL+EALKSSSPHTV+SHLPIHQDGSCNGLQ
Sbjct: 601  EIFDSADNSLNGNRWWLKAEDPFQCLAACINLAEALKSSSPHTVISHLPIHQDGSCNGLQ 660

Query: 1518 HYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLG 1339
            HYAALGRDSFEAAAVNL+AG+KPADVYSEIA RVH IMK+DS KDPAT+P+AL+AKLL+ 
Sbjct: 661  HYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIS 720

Query: 1338 QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGE 1159
            QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGE
Sbjct: 721  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGE 780

Query: 1158 LFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 979
            LFQAARAIMGWLGDCAKIIASENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE
Sbjct: 781  LFQAARAIMGWLGDCAKIIASENQPVCWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 840

Query: 978  GDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGV 850
            GDSVEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGLRFAG+
Sbjct: 841  GDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLRFAGL 883


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1531 bits (3965), Expect = 0.0
 Identities = 748/991 (75%), Positives = 863/991 (87%), Gaps = 1/991 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNPDFLPMSPSELPIFCENPYLSSYSFPH 3433
            LAS+A +SPSP +                   + +FL +S +              SFP 
Sbjct: 38   LASSASYSPSPPSSQWRKTQKSQKNCFLYGIHSQEFLKLSQTS-------------SFPK 84

Query: 3432 TLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKRVFIQDP 3253
            TLKLP ++    + +  +  S D+N  E+ + L NLQ IPNG+   L K S+KRVFIQDP
Sbjct: 85   TLKLPVIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDP 144

Query: 3252 PWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYY-LLRRRQIKVETEAWENMVEEYKELE 3076
            PWVSSLFM +L  R++   GV+ E++E+ERR+ Y +LRRRQIK ETEAWE MVEEY+ELE
Sbjct: 145  PWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELE 204

Query: 3075 REMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADKMAV 2896
            REMCEKKLAPNLPYVKKL+LGWFEPLR AIEKEQ +  T+KH+TA+AP ID+LPADKMAV
Sbjct: 205  REMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAV 264

Query: 2895 IVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDESQG 2716
            IVMHK+MGLLMMGGK++RCV+VV+AA+QIG+A+E+EVRIH+F+EK++K Q+     + Q 
Sbjct: 265  IVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMSGAQGQE 324

Query: 2715 ISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTAYVQ 2536
              S+E ++LRKRVKSLI+RNRV+EV+KL+++EE +SWGRDTQAKLGC L+ELLT TAYVQ
Sbjct: 325  DMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQ 384

Query: 2535 PPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMIIPY 2356
            PPV+QSAD+PPD+RPAFRH+F+IATR+PG+N+VK+YGVIECDPLV+ G+DRTVK M+IPY
Sbjct: 385  PPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPY 444

Query: 2355 VPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLGNTK 2176
            VPMLVPPKKW+GYDKGGY FLPSYLMRTHGSR+QQDAVR+VP KQMQ+VYEALDTLG+TK
Sbjct: 445  VPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTK 504

Query: 2175 WRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLSDDLEVVKEWKWSVRKAKKINRER 1996
            WRVNKRIL VVESIWAGGGNIAGLV+R+DVPIPEL SDD+  +K WKW VRKAKKIN+E 
Sbjct: 505  WRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQEL 564

Query: 1995 HSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEFADGR 1816
            HSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGILEFA+GR
Sbjct: 565  HSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGR 624

Query: 1815 PLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWLTAED 1636
            PLGKSGL WLK+HLA+LY GG+EKL YD RI+FVENH+ DI DSA  PLNGNRWWL AED
Sbjct: 625  PLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAED 684

Query: 1635 PFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGE 1456
            P QCLAACINLSEALKS SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVAGE
Sbjct: 685  PLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGE 744

Query: 1455 KPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYGVTYV 1276
            KPADVY+EIA+RV  I++ DS KDPAT+PNAL+AKLL+ QVDRKLVKQTVMTSVYGVTYV
Sbjct: 745  KPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYV 804

Query: 1275 GAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIAS 1096
            GAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK+IAS
Sbjct: 805  GAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIAS 864

Query: 1095 ENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSL 916
            ENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVHSL
Sbjct: 865  ENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSL 924

Query: 915  DGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENLLESF 736
            DGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++P+LE+LLESF
Sbjct: 925  DGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESF 984

Query: 735  ETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            +  YPAL+FPPLPKRGDF+L++VLESPYFFN
Sbjct: 985  QESYPALTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            lycopersicum]
          Length = 1007

 Score = 1530 bits (3961), Expect = 0.0
 Identities = 745/991 (75%), Positives = 864/991 (87%), Gaps = 1/991 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNPDFLPMSPSELPIFCENPYLSSYSFPH 3433
            LAS+A +SP+P +             ++    N +FL +S +              SFP 
Sbjct: 30   LASSASYSPTPASSQWRKAQKSQKNCTFHGIYNQEFLKLSQTS-------------SFPK 76

Query: 3432 TLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKRVFIQDP 3253
            TLKLP ++    + +  +  S D+N  E+ + L NLQ IPNG+   L K S+KRVFIQDP
Sbjct: 77   TLKLPIIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDP 136

Query: 3252 PWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYY-LLRRRQIKVETEAWENMVEEYKELE 3076
            PWVSSLFM NL  R++   GV+ E++E+ERR+ Y +LRRRQIK ETEAWE MVEEY+ELE
Sbjct: 137  PWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELE 196

Query: 3075 REMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADKMAV 2896
            REMCEKKLAPNLPYVKKL+LGWFEPLR AIE+EQ +  T+KH+TA+AP ID+LPADKMAV
Sbjct: 197  REMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSLPADKMAV 256

Query: 2895 IVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDESQG 2716
            IVMHK+MGLLMMGGK++RCV+VV+AA+QIG+A+E+EVRIH+F+EK++K Q+     + Q 
Sbjct: 257  IVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMTGAQGQE 316

Query: 2715 ISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTAYVQ 2536
              S+E ++LRKRVKSLI+RNRV+EV+KL+++EE +SWGRDTQAKLGC L+ELLT TAYVQ
Sbjct: 317  DMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQ 376

Query: 2535 PPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMIIPY 2356
            PPV+QSAD+PPD+RPAFRH+F+IATR+PG+N+VK+YGVIECDPLV+ G+DRTVK M+IPY
Sbjct: 377  PPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPY 436

Query: 2355 VPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLGNTK 2176
            VPMLVPPKKW+GYDKGGY FLPSYLMRTHGSR+QQDAVR+VP KQMQ+VYEALDTLG+TK
Sbjct: 437  VPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTK 496

Query: 2175 WRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLSDDLEVVKEWKWSVRKAKKINRER 1996
            WRVNKRIL VVE+IWAGGGNIAGLV+R+DVPIPEL SDD+  +K WKW VRKAKKIN+E 
Sbjct: 497  WRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQEL 556

Query: 1995 HSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEFADGR 1816
            HSQRCD ELKLSVARK++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGILEFA+GR
Sbjct: 557  HSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGR 616

Query: 1815 PLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWLTAED 1636
            PLGKSGL WLK+HLA+LY GG+EKL YD RI+FVENH+ DI DSA  PLNGNRWWL AED
Sbjct: 617  PLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAED 676

Query: 1635 PFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGE 1456
            P QCLAACINLSEA+KS SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVAGE
Sbjct: 677  PLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGE 736

Query: 1455 KPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYGVTYV 1276
            KPADVY+EIA+RV  I++ DS KDPAT+PNAL+AKLL+ QVDRKLVKQTVMTSVYGVTYV
Sbjct: 737  KPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYV 796

Query: 1275 GAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIAS 1096
            GAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK+IAS
Sbjct: 797  GAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIAS 856

Query: 1095 ENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSL 916
            ENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVHSL
Sbjct: 857  ENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSL 916

Query: 915  DGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENLLESF 736
            DGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++P+LE+LLESF
Sbjct: 917  DGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESF 976

Query: 735  ETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            +  YPAL+FPPLPKRGDF+L +VLESPYFFN
Sbjct: 977  QESYPALTFPPLPKRGDFDLREVLESPYFFN 1007


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            [Nicotiana tabacum] gi|21425667|emb|CAC95021.2|
            chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score = 1527 bits (3953), Expect = 0.0
 Identities = 755/995 (75%), Positives = 865/995 (86%), Gaps = 5/995 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNP---DFLPMSPSELPIFCENPYLSSYS 3442
            +ASTA +SPSP +Q             W+  K P   +F  +   E     ++  LS+ S
Sbjct: 1    MASTASYSPSPTSQ-------------WRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSS 47

Query: 3441 FPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKRVFI 3262
            FP TLKLP +    P+       +   +  E+ + L NLQ IPNGF   L K S+KRVFI
Sbjct: 48   FPKTLKLPVIH--MPINNIQSQTTVCVSTDENLEELVNLQKIPNGF---LNKESNKRVFI 102

Query: 3261 QDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYY-LLRRRQIKVETEAWENMVEEYK 3085
            QDPPWVSSLFM +L  R++   GV+ E++E+ERR+ Y +LRRRQIK ETEAWE MVEEY+
Sbjct: 103  QDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYR 162

Query: 3084 ELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADK 2905
            ELEREMCEKKLAPNLPYVKKL+LGWFEPLR AIEKEQ +  T KH+ AFAP ID+LPADK
Sbjct: 163  ELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADK 222

Query: 2904 MAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDE 2725
            MAVIVMHK+MGLLMMGGK++RCV+VV+AA+QIG+A+E+EVRIH+FLEK++K Q+     +
Sbjct: 223  MAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQ 282

Query: 2724 SQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTA 2545
            SQ   SKE ++LRKRVKSLI+RNRV+EV+KL+++EE +SWGRDTQAKLGC L+ELLT TA
Sbjct: 283  SQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETA 342

Query: 2544 YVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMI 2365
            YVQ PV+QSAD+PPD+RPAFRH+FKIATR+PG+N+VK+YGVIECDPLV+ G+DRTVK M+
Sbjct: 343  YVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMM 402

Query: 2364 IPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLG 2185
            IPYVPMLVPPKKW+GYDKGGY FLPSYLMRTHGSR+QQDAVR VP KQMQ+VYEALDTLG
Sbjct: 403  IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLG 462

Query: 2184 NTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELL-SDDLEVVKEWKWSVRKAKKI 2008
            +TKWRVNKRIL VVESIWAGGGNIAGLV+R+DVPIPEL  SDD+  VK+WKW VRK+KKI
Sbjct: 463  STKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKI 522

Query: 2007 NRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEF 1828
            N+E HSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGILEF
Sbjct: 523  NQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEF 582

Query: 1827 ADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWL 1648
            A+GRPLGKSGL WLKIHLA+LY GGVEKL YD R++FVENH+ DI DSA+ PLNGNRWWL
Sbjct: 583  AEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWL 642

Query: 1647 TAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 1468
             AEDPFQCLAACINLSEALKSSSPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 643  NAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNL 702

Query: 1467 VAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYG 1288
            VAGEKPADVY+EIA+RV  I++ DS KDPA +PNAL+AKLL+ QVDRKLVKQTVMTSVYG
Sbjct: 703  VAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYG 762

Query: 1287 VTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAK 1108
            VTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDCAK
Sbjct: 763  VTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAK 822

Query: 1107 IIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNF 928
            +IA ENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQ+LALQREGD+VEVRKQRTAFPPNF
Sbjct: 823  VIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNF 882

Query: 927  VHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENL 748
            VHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++P+LE+L
Sbjct: 883  VHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDL 942

Query: 747  LESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            LE+F+  YPAL+FPPLPKRGDFNL +VLESPYFFN
Sbjct: 943  LENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris]
            gi|59800202|sp|P69242.1|RPOT3_NICSY RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic;
            AltName: Full=NsRpoT-C; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3;
            Flags: Precursor [Nicotiana sylvestris]
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor [Nicotiana tabacum]
            gi|21425641|emb|CAC82576.3| phage-type RNA polymerase
            [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2|
            plastid RNA polymerase [Nicotiana tabacum]
            gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
            gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 977

 Score = 1526 bits (3951), Expect = 0.0
 Identities = 755/997 (75%), Positives = 868/997 (87%), Gaps = 7/997 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNP---DFLPMSPSELPIFCENPYLSSYS 3442
            +ASTA +SPSP +Q             W+  K P   +F  +   E     ++  L + S
Sbjct: 1    MASTASYSPSPTSQ-------------WRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSS 47

Query: 3441 FPHTLKLPSLR---NSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKR 3271
            FP TLKLP ++   N+       +  S D+N  E    L NLQ I NG    LTK S+KR
Sbjct: 48   FPKTLKLPVIQMPINNNIQSQTTVCVSTDENLEE----LVNLQKIANGV---LTKESNKR 100

Query: 3270 VFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYY-LLRRRQIKVETEAWENMVE 3094
            VFIQDPPWVSSLFM +L  R++   GV+ E++E+ERR+ Y +LRRRQIK ETEAWE MVE
Sbjct: 101  VFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVE 160

Query: 3093 EYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALP 2914
            EY+ELEREMCEKKLAPNLPYVKKL+LGWFEPLR AIEKEQ +  T KH+ AFAP ID+LP
Sbjct: 161  EYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLP 220

Query: 2913 ADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDI 2734
            ADKMAVIVMHK+MGLLMMGGK++RCV+VV+AA+QIG+A+E+EVRIH+FLEK++K Q+   
Sbjct: 221  ADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMT 280

Query: 2733 VDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLT 2554
              +SQ   S+E ++LRKRVKSLI+RNRV+EV+KL+++EE +SWGRDTQAKLGC L+ELLT
Sbjct: 281  GAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLT 340

Query: 2553 HTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVK 2374
             TAYVQPPV+QSAD+PPD+RPAFRH+F+IATR+PG+++VK+YGVIECDPLV+ G+DRTVK
Sbjct: 341  ETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVK 400

Query: 2373 HMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALD 2194
             M+IPYVPMLVPPKKW+GYDKGGY FLPSYLMRTHGSR+QQDAVR+VP KQMQ+VYEALD
Sbjct: 401  QMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALD 460

Query: 2193 TLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLSDDLEVVKEWKWSVRKAK 2014
            TLG+TKWRVNKRIL VVESIWAGGGNIAGLV+R+DVPIPEL SDD+  VK+WKW VRK+K
Sbjct: 461  TLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSK 520

Query: 2013 KINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGIL 1834
            KIN+E HSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGIL
Sbjct: 521  KINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL 580

Query: 1833 EFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRW 1654
            EFA+GRPLGKSGL WLKIHLA+LY GG+EKL YD R++FVENH+ DI DSA+ PLNGNRW
Sbjct: 581  EFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRW 640

Query: 1653 WLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAV 1474
            WL AEDPFQCLAACINLSEALKSSSPHTV SHLPIHQDGSCNGLQHYAALGRDS EAAAV
Sbjct: 641  WLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAV 700

Query: 1473 NLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSV 1294
            NLVAG+KPADVY+EIA+RV  I++ DS KDPAT+PNAL+AKLL+ QVDRKLVKQTVMTSV
Sbjct: 701  NLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSV 760

Query: 1293 YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC 1114
            YGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGDC
Sbjct: 761  YGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDC 820

Query: 1113 AKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP 934
            AK+IASENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFPP
Sbjct: 821  AKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPP 880

Query: 933  NFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLE 754
            NFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++P+LE
Sbjct: 881  NFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILE 940

Query: 753  NLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            +LLESF+  YPAL+FPPLPKRGDF+L +VLESPYFFN
Sbjct: 941  DLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
            [Nicotiana tomentosiformis]
          Length = 919

 Score = 1504 bits (3894), Expect = 0.0
 Identities = 729/905 (80%), Positives = 827/905 (91%), Gaps = 2/905 (0%)
 Frame = -3

Query: 3351 ESHQNLSNLQLIPNGFSSNLTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQE 3172
            E+ + L NLQ IPNGF   L K S+KRVFIQDPPWVSSLFM +L  R++   GV+ E++E
Sbjct: 18   ENLEELVNLQKIPNGF---LNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFRE 74

Query: 3171 MERRKYY-LLRRRQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLR 2995
            +ERR+ Y +LRRRQIK ETEAWE MVEEY+ELEREMCEKKLAPNLPYVKKL+LGWFEPLR
Sbjct: 75   IERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLR 134

Query: 2994 AAIEKEQKSLRTKKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAI 2815
             AIEKEQ +  T KH+ AFAP ID+LPADKMAVIVMHK+MGLLMMGGK++RCV+VV+AA+
Sbjct: 135  QAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 194

Query: 2814 QIGVAIEHEVRIHSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQK 2635
            QIG+A+E+EVRIH+FLEK++K Q+     +SQ   S+E ++LRKRVKSLI+RNRV+EV+K
Sbjct: 195  QIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRK 254

Query: 2634 LVRNEEFKSWGRDTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATRE 2455
            L+++EE +SWGRDTQAKLGC L+ELLT TAYVQ PV+QSAD+PPD+RPAFRH+FKIATR+
Sbjct: 255  LMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRD 314

Query: 2454 PGQNLVKRYGVIECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMR 2275
            PG+N+VK+YGVIECDPLV+ G+DRTVK M+IPYVPMLVPPKKW+GYDKGGY FLPSYLMR
Sbjct: 315  PGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMR 374

Query: 2274 THGSRQQQDAVRTVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNR 2095
            THGSR+QQDAVR VP KQMQ+VYEALDTLG+TKWRVNKRIL VVESIWAGGGNIAGLV+R
Sbjct: 375  THGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDR 434

Query: 2094 EDVPIPELL-SDDLEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYP 1918
            +DVPIPEL  SDD+  VK+WKW VRK+KKIN+E HSQRCD ELKLSVARK+KDEEGFYYP
Sbjct: 435  KDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYP 494

Query: 1917 HNLDFRGRAYPMHPHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLS 1738
            HNLDFRGRAYPMHPHLNHLSSD+CRGILEFA+GRPLGKSGL WLKIHLA+LY GGVEKL 
Sbjct: 495  HNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLC 554

Query: 1737 YDGRISFVENHLWDIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSH 1558
            YD R++FVENH+ DI DSA+ PLNGNRWWL AEDPFQCLAACINLSEALKSSSPHTV+SH
Sbjct: 555  YDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISH 614

Query: 1557 LPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPA 1378
            LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAGEKPADVY+EIA+RV  I++ DS KDPA
Sbjct: 615  LPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPA 674

Query: 1377 TNPNALVAKLLLGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAA 1198
             +PNAL+AKLL+ QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+
Sbjct: 675  IDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTAS 734

Query: 1197 CYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHV 1018
            CYAAKVTLAALGELFQAAR  M WLGDCAK+IA ENQPV WTTPLGLPVVQPYFKTQRHV
Sbjct: 735  CYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHV 794

Query: 1017 IRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSF 838
            IRTSLQ+LALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSF
Sbjct: 795  IRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSF 854

Query: 837  WTHACDVDRMNQILRQKFVDLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLES 658
            WTHACDVD+MN+ILR+KFV+LY++P+LE+LLE+F+  YPAL+FPPLPKRGDFNL +VLES
Sbjct: 855  WTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLES 914

Query: 657  PYFFN 643
            PYFFN
Sbjct: 915  PYFFN 919


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score = 1489 bits (3855), Expect = 0.0
 Identities = 719/938 (76%), Positives = 826/938 (88%), Gaps = 2/938 (0%)
 Frame = -3

Query: 3450 SYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNG-FSSNLTKTSSK 3274
            S SFP  +KLPSL   AP L+ P+SDS+DDN+ E+  NL+ + + PNG  SS  +K    
Sbjct: 16   SSSFPRNVKLPSLHTPAPFLSHPVSDSSDDNFTENPGNLATMLVTPNGGISSEFSKELRD 75

Query: 3273 RV-FIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMV 3097
            RV  IQDPPW+SSL++K+LLFR+RN+  VKIE++EMER KYY LRRRQIK ETEAWENMV
Sbjct: 76   RVVIIQDPPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMV 135

Query: 3096 EEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDAL 2917
            +EYKELE+EMCEKK+APNLPY KKL+LGWFEPL  AI  EQ   + KK++ AFAP+ID+L
Sbjct: 136  KEYKELEKEMCEKKMAPNLPYFKKLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDSL 195

Query: 2916 PADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRD 2737
            P + MAVIVMHKIMGLLMMGGK DRC+RVVEAA+QIG AIE EVRIH+FLEK+ K Q+  
Sbjct: 196  PPESMAVIVMHKIMGLLMMGGKQDRCIRVVEAALQIGKAIEQEVRIHAFLEKT-KHQKEA 254

Query: 2736 IVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELL 2557
            +  ESQ  S ++A  LRKRVK+L+RR R +EVQKLV++E  + W R+ QAKLGCCLI LL
Sbjct: 255  VASESQENSCEKAANLRKRVKNLVRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINLL 314

Query: 2556 THTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTV 2377
            T +AYVQPPV+QSADSPPDVRPAFRH FKIATREP Q +V+RYGVIECDPL+L G +  V
Sbjct: 315  TQSAYVQPPVSQSADSPPDVRPAFRHFFKIATREPRQTVVRRYGVIECDPLILDGFESNV 374

Query: 2376 KHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEAL 2197
            KHM++P++PML+PPKKWKGYDKGGY FLPSY+MRTHGSR+QQDAV+TV  ++MQKV+EAL
Sbjct: 375  KHMMVPHIPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEAL 434

Query: 2196 DTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLSDDLEVVKEWKWSVRKA 2017
            DTLGNTKWRVNK IL VVE IWA GGNIAGLVNREDVP+PEL SDD   +K+WK+S+RKA
Sbjct: 435  DTLGNTKWRVNKSILSVVEDIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKA 494

Query: 2016 KKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGI 1837
            KK N E HS RCD ELKLSVAR +KDEEGFYYPHN+DFRGRAYPMHPHLNHLSSD+CRGI
Sbjct: 495  KKNNMEMHSLRCDTELKLSVARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGI 554

Query: 1836 LEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNR 1657
            LEF++GRPLGKSGL+WLK+HLANL+GGGV+KL YD R+SFVEN++ ++FDSAD PL+GNR
Sbjct: 555  LEFSEGRPLGKSGLYWLKLHLANLFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGNR 614

Query: 1656 WWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1477
            WWL AEDPFQ LAACIN+SEAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAAA
Sbjct: 615  WWLKAEDPFQFLAACINISEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 674

Query: 1476 VNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTS 1297
            VNLVAG KP DVYSEIA RV +IMK DS KDPA +PNA++AKLL+GQVDRKLVKQTVMTS
Sbjct: 675  VNLVAGHKPTDVYSEIAERVLDIMKSDSEKDPADDPNAVLAKLLIGQVDRKLVKQTVMTS 734

Query: 1296 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 1117
            VYGVTYVGAREQI++RL EKG I DD++LF AACYAAKVT+AALG+LFQAARAIM WLGD
Sbjct: 735  VYGVTYVGAREQIRKRLAEKGFINDDKVLFMAACYAAKVTMAALGQLFQAARAIMSWLGD 794

Query: 1116 CAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 937
            CAKIIASENQPV WTTPLGLPVVQPYFKT+RHVIRTSLQVLALQREGDSVEVRKQ+TAFP
Sbjct: 795  CAKIIASENQPVRWTTPLGLPVVQPYFKTKRHVIRTSLQVLALQREGDSVEVRKQKTAFP 854

Query: 936  PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVL 757
            PNFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVD+MNQILR+KFVDLY++P+L
Sbjct: 855  PNFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDKMNQILREKFVDLYSMPIL 914

Query: 756  ENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            E+LLESF++ YP L FPPLPKRGDF+L  VL+SPYFFN
Sbjct: 915  EDLLESFQSSYPTLRFPPLPKRGDFDLRNVLDSPYFFN 952


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1456 bits (3768), Expect = 0.0
 Identities = 729/997 (73%), Positives = 851/997 (85%), Gaps = 7/997 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNPDFLPMSPSELPI-FCENPYL--SSYS 3442
            +ASTA  S +   Q+  P           R K P  LP  P + P+ F   P L  S  S
Sbjct: 1    MASTASLSLTQTPQIQYPT----------RRKPP--LPQKPHKKPLLFLPKPTLHPSLVS 48

Query: 3441 FPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSN-LTKTSSKRVF 3265
            FP  L L S  N A     PL DS  DN+VE+ +N SN  L+P   S   L+  S+ R+F
Sbjct: 49   FPFPLNLNSPPNPARFC--PLHDSLHDNFVENIENPSNF-LLPKAQSHQILSPESTPRLF 105

Query: 3264 IQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMVEEYK 3085
            IQDPPW+S+LF+K L ++  N++ VKIE++E+E+RKY LLRRRQ+K ETEAWE MVEEY+
Sbjct: 106  IQDPPWISALFLKGL-YKMTNQT-VKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYR 163

Query: 3084 ELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLR--TKKHKTAFAPFIDALPA 2911
            EL+REMCEKKLAPNLPYVK L LGWFEP+R AI +EQK  +  +KK + A+AP I+ LPA
Sbjct: 164  ELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPA 223

Query: 2910 DKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIV 2731
            DKMAVIVMHK+MGL+M G +++  V+VV+AA+ IGVAIE EVRIH+FLEK++  QR+   
Sbjct: 224  DKMAVIVMHKMMGLVM-GAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT 282

Query: 2730 DESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTH 2551
            DE QG+S KE  +L+KRV SLIRR R++EVQKLV+NEE K WGRD QAKLG  L+ELLT 
Sbjct: 283  DEVQGLS-KEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTE 341

Query: 2550 TAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKH 2371
            TAYVQPP++QS DSPPDV+PAFRH FK  +++PG+ ++KRYGVIECDPL+L+GLDR+ KH
Sbjct: 342  TAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKH 401

Query: 2370 MIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDT 2191
            M+IPYVPMLVPPKKWKGYDKGGY FLPSY+MRTHGSR+QQDA++ V  K+MQKV+EALDT
Sbjct: 402  MLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDT 461

Query: 2190 LGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPEL-LSDDLEVVKEWKWSVRKAK 2014
            LG+TKWRVNK++L VVESIWA GGNIAGLV+R D+PIPE   S+D    +EWKWSVRKA 
Sbjct: 462  LGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKAN 521

Query: 2013 KINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGIL 1834
            KINRERHSQRCD ELKLSVARK+++EEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+L
Sbjct: 522  KINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 581

Query: 1833 EFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRW 1654
            EFA+GRPLG+SGLHWLKIHLANL+ GGVEKLS+DGR++FV+NHL DIFDSA+ P+NGNRW
Sbjct: 582  EFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRW 641

Query: 1653 WLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAV 1474
            WLTAEDPFQCLAACINLSE+LKSSSPH+V+S+LPIHQDGSCNGLQHYAALGRDS EAAAV
Sbjct: 642  WLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAV 701

Query: 1473 NLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSV 1294
            NLVAGEKPADVYSEIAVRVH IMK+DS+KDPATNPNA +AKLL+ QVDRKLVKQTVMTSV
Sbjct: 702  NLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSV 761

Query: 1293 YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC 1114
            YGVT+VGAREQIKRRLEEKG ITDDR+LF+AACY AKVTLAALGELFQAAR IMGWLGDC
Sbjct: 762  YGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDC 821

Query: 1113 AKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP 934
            AK+IASENQPV WTTPLGLPVVQPY+K++RH+IRTSLQVLALQREGDSVEVRKQRTAFPP
Sbjct: 822  AKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPP 881

Query: 933  NFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLE 754
            NFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++MNQILR+KFV+LY++PVLE
Sbjct: 882  NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLE 941

Query: 753  NLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            NL ES +T YP+L FPPLP+RG+F+L +VL+SPYFFN
Sbjct: 942  NLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 721/993 (72%), Positives = 833/993 (83%), Gaps = 3/993 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHK--NPDFLPMSPSELPIFCENPYLSSYSF 3439
            +ASTA FSPSP+AQ +           W +    N  FL  S S   +F +  + SS  F
Sbjct: 1    MASTASFSPSPQAQTYT------CSSRWSKAPKLNHKFLFSSTSN-SLFFKPSHSSSTHF 53

Query: 3438 PHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKRVFIQ 3259
            P  LK P      P+  PPL DS  DN VE   N  N Q+  + F     + S+ R+FIQ
Sbjct: 54   PLNLKPPP----EPVHIPPLRDSIQDNIVE---NSMNFQIPMSEFHLITPQESAPRIFIQ 106

Query: 3258 DPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMVEEYKEL 3079
            DPPW++SLF+K +  R+  +  +K+E +E+ERR Y +LRRRQIK ETEAWE MV+EYK+L
Sbjct: 107  DPPWIASLFLKGIYKRANQE--LKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDL 164

Query: 3078 EREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADKMA 2899
            E+ M EKKLAPNLPYVK L LGWFEPLR AI +EQK+ +TKKHK AFAP ID LPADKMA
Sbjct: 165  EKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMA 224

Query: 2898 VIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDESQ 2719
            +IVMHK+MGL+M+G +D  CV+VV+AA+ IG+AIE EVRIHSFLEK++  Q++      +
Sbjct: 225  LIVMHKMMGLVMVGNQDG-CVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADE 283

Query: 2718 GISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTAYV 2539
               SKE  +LRKRV  LIRR R+ EVQKL+  EE K WGRD QAKLG  LIELLT TAYV
Sbjct: 284  DGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAYV 343

Query: 2538 QPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMIIP 2359
            QPP++Q ADSPPDVRPAFRH FK   + PGQ +VK YGVIECDPLVLTGLD+T KHM+IP
Sbjct: 344  QPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIP 403

Query: 2358 YVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLGNT 2179
            YVPMLVPPK+WKGYDKGG+ FLPSY+MRTHGSR+Q DA+R +   QMQKV+EALD LG+T
Sbjct: 404  YVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGST 463

Query: 2178 KWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELL-SDDLEVVKEWKWSVRKAKKINR 2002
            KWRVNK++L VVESIWA GGNIAGLVNREDVP+P+   S+DL+ ++EWKWSVRKAKKIN+
Sbjct: 464  KWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQ 523

Query: 2001 ERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEFAD 1822
            ERHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFA+
Sbjct: 524  ERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 583

Query: 1821 GRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWLTA 1642
            GRPLGKSGL WLKIHLANLY GGVEKLSY+GR++FV+NH+ DIFDSA  P+NGNRWWLTA
Sbjct: 584  GRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTA 643

Query: 1641 EDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVA 1462
            EDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLV 
Sbjct: 644  EDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVD 703

Query: 1461 GEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYGVT 1282
            G+KPADVYSEIA RVHEIMK+DSNKDP T+PNAL+A++L+ Q+DRKLVKQTVMTSVYGVT
Sbjct: 704  GDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVT 763

Query: 1281 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1102
            YVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGDCAK+I
Sbjct: 764  YVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVI 823

Query: 1101 ASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 922
            ASENQPV WTTPLGLPVVQPY K++RH+IRTSLQVLALQRE +SV++RKQRTAFPPNFVH
Sbjct: 824  ASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVH 883

Query: 921  SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENLLE 742
            SLDGSHMMMTA+ACRDAGLRFAGVHDSFWTH CDVD+MN+ILR+KFV+LY++P+LE+LLE
Sbjct: 884  SLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLE 943

Query: 741  SFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            SF+  YPAL+FPPLP+RGDF+L +VLESPYFFN
Sbjct: 944  SFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1451 bits (3756), Expect = 0.0
 Identities = 720/1005 (71%), Positives = 833/1005 (82%), Gaps = 15/1005 (1%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNPDFLPMSPSELPIFCENPY-------- 3457
            +ASTA F P P A++  P            HK    LP+      +F  NP         
Sbjct: 1    MASTAVFLPIPHAKIQKPKKLD-------HHKPHRTLPV------LFTSNPSPHFHTSTI 47

Query: 3456 ----LSSYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLT 3289
                LSS SF H    PS  +++      L  S  +N +E+ Q+ SN+Q+          
Sbjct: 48   SKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIETLQDSSNIQV---------- 97

Query: 3288 KTSSKRVFIQDPPWVSSLFMKNLLFRSRNKS-GVKIEYQEMERRKYYLLRRRQIKVETEA 3112
            K S  R+F+QDPPW+SS    +   R+R     VK+E++E ERR Y LLRRRQ+K ETEA
Sbjct: 98   KESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEA 157

Query: 3111 WENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAP 2932
            WE MVEEY+E+EREMCEKKLAPNLPYVK L LGWFEPLR AI+KEQ++ RTKK K A+AP
Sbjct: 158  WERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAP 217

Query: 2931 FIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRK 2752
             I+ LPADKMAVIVMHK+MGL+MMG  ++ CVRVV+AA+QIG+AIE EVRIHSFLEK++ 
Sbjct: 218  HIELLPADKMAVIVMHKMMGLVMMG-HEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKN 276

Query: 2751 CQRRDIVDESQ-GISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGC 2575
             +R   V  SQ G+  KE  +LRKRVKS IR+ +++EVQKLV+NEE   WGRDTQAKLG 
Sbjct: 277  FERHKTVGHSQEGLREKE--ILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGS 334

Query: 2574 CLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLT 2395
             LIELLT TAYVQ PVNQSAD PPDVRPAFRH FK  T+E GQ   ++YGVIECDPLVL 
Sbjct: 335  RLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLI 394

Query: 2394 GLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQ 2215
            GLDRT KHM+IPYVPML+PPKKWKGYDKGGY FLPSY+MRTHGSR+QQDAV++VP +Q+Q
Sbjct: 395  GLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQ 454

Query: 2214 KVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLS-DDLEVVKEW 2038
            KV+EALDTLGNTKWR+N+R+L VVESIWA GGN+ GLV+RE+VP+PE  S +DL  ++ W
Sbjct: 455  KVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNW 514

Query: 2037 KWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 1858
            KW+ RKAKKIN+ERHS RCD E+KLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLS
Sbjct: 515  KWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 574

Query: 1857 SDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSAD 1678
            SD+CRG+LEFA+GRPLGKSGL WLKI LANLY GGVEKLSYDGR++FV+NHL D+FDSAD
Sbjct: 575  SDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSAD 634

Query: 1677 KPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGR 1498
             PLNGNRWWLTAEDPFQCLAACINLSEAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGR
Sbjct: 635  NPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGR 694

Query: 1497 DSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLV 1318
            +S EA+AVNLVAGEKPADVYSEIA RVHEIMK+DSNKDPAT+P AL+AK+L+GQVDRKLV
Sbjct: 695  NSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLV 754

Query: 1317 KQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARA 1138
            KQTVMTSVYGVTY+GAREQIKRRL EKGLITD+RLLF+AACYAAKVTLAALGE+FQAAR 
Sbjct: 755  KQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARD 814

Query: 1137 IMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVR 958
            IM WLG+CAK+IASENQPV WTTPLGLPV+QPY K++RH+IRTSLQVLALQREG  V +R
Sbjct: 815  IMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIR 874

Query: 957  KQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVD 778
            KQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MNQILR+KFV+
Sbjct: 875  KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVE 934

Query: 777  LYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            LY++P+LENLLESF+T +P L+FPPLP RG+F+L +VLESPYFFN
Sbjct: 935  LYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score = 1447 bits (3747), Expect = 0.0
 Identities = 719/993 (72%), Positives = 831/993 (83%), Gaps = 3/993 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHK--NPDFLPMSPSELPIFCENPYLSSYSF 3439
            +ASTA FSPSP+ Q +           W +    N  FL  S S   +F +  + SS  F
Sbjct: 1    MASTASFSPSPQGQGYT------CSSRWSKPPKLNHKFLFSSTSN-SLFFKPSHSSSTHF 53

Query: 3438 PHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKRVFIQ 3259
            P +LK P      P+  PPL DS  DN VE   N  N Q+  + F     + S  R+FIQ
Sbjct: 54   PLSLKPPP----EPVHIPPLRDSIQDNIVE---NSMNFQIPMSEFHLITPQESGPRIFIQ 106

Query: 3258 DPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMVEEYKEL 3079
            DPPW++SLF+K +  R+  +  +K+E +E+ERR Y LLRRRQIK ETEAWE MV+EYK+L
Sbjct: 107  DPPWIASLFLKGIYKRANQE--LKLESKEIERRNYNLLRRRQIKAETEAWERMVDEYKDL 164

Query: 3078 EREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADKMA 2899
            E+ M EKKLAPNLPYVK L LGWFEPLR AI +EQK+ +TKKHK AFAP ID LPADKMA
Sbjct: 165  EKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMA 224

Query: 2898 VIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDESQ 2719
            +IVMHK+MGL+M+G +D  CV+VV+AA+ IG+AIE EVRIHSFLEK++  Q++      +
Sbjct: 225  LIVMHKMMGLVMVGNQDG-CVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADE 283

Query: 2718 GISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTAYV 2539
               SKE  +LRKRV  LIRR R+ EVQKL+  EE K WGRD QAKLG  LIELLT TAYV
Sbjct: 284  DGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAYV 343

Query: 2538 QPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMIIP 2359
            QPP++Q A+SPPDVRPAFRH FK   + PGQ +VK YGVIECDPLVLTGLD+T KHM+IP
Sbjct: 344  QPPLSQLAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIP 403

Query: 2358 YVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLGNT 2179
            YVPMLVPPK+WKGYDKGG+ FLPSY+MRTHGSR+Q DA+R +   QMQKV+EALD LG+T
Sbjct: 404  YVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGST 463

Query: 2178 KWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELL-SDDLEVVKEWKWSVRKAKKINR 2002
            KWRVNK++L VVESIWA GGNIAGLVNREDVP+P+   S+DL+ ++EWKWSVRKAKKIN+
Sbjct: 464  KWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQ 523

Query: 2001 ERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEFAD 1822
            ERHS RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFA+
Sbjct: 524  ERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAE 583

Query: 1821 GRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWLTA 1642
            GRPLGKSGL WLKIHLANLY GGVEKLSY+GR++FV+NH+ DIFDSA  P+NGNRWWLTA
Sbjct: 584  GRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTA 643

Query: 1641 EDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVA 1462
            EDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLV 
Sbjct: 644  EDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVD 703

Query: 1461 GEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYGVT 1282
            G+KPADVYSEIA RVHEIMK+DSNKDP T+PNAL+A++L+ Q+DRKLVKQTVMTSVYGVT
Sbjct: 704  GDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVT 763

Query: 1281 YVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKII 1102
            YVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGDCAK+I
Sbjct: 764  YVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVI 823

Query: 1101 ASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVH 922
            ASENQPV WTTPLGLPVVQPY K++RH+IRTSLQVLALQRE +SV++RKQRTAFPPNFVH
Sbjct: 824  ASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVH 883

Query: 921  SLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENLLE 742
            SLDGSHMMMTA+ACRDAGLRFAGVHDSFWTH CDVD+MN+ILR+KFV+LY++P+LE+LLE
Sbjct: 884  SLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLE 943

Query: 741  SFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            SF+  YPAL+FPPLP+RGDF+L +VLESPYFFN
Sbjct: 944  SFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1446 bits (3742), Expect = 0.0
 Identities = 717/958 (74%), Positives = 830/958 (86%), Gaps = 8/958 (0%)
 Frame = -3

Query: 3492 PSELPIFCENPYLSSYSFPHTLKLPSLRN-SAPLLTP---PLSDSADDNYVESHQNLSNL 3325
            P + P+F     L   +FP     P  R+ + P   P   PL DS  DN V++ +N   L
Sbjct: 24   PHKKPLFS----LPKQAFPLIFSFPIHRSLNYPTKPPRFLPLCDSLQDNIVQNIENPKKL 79

Query: 3324 QLIPNGFSSN-LTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYL 3148
             L+PN  S   L+  S+ R+FIQDPPW+S+LF K L ++  N++ VKIE++E+E+RKY L
Sbjct: 80   -LLPNAHSRQILSPESAPRIFIQDPPWISALFWKGL-YKMTNQT-VKIEHKEIEKRKYNL 136

Query: 3147 LRRRQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKS 2968
            LRRRQ+K ETEAWE MVEEY+ELEREMCEKKLAPNLPYVK L LGWFEPLR AI KEQK 
Sbjct: 137  LRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKV 196

Query: 2967 LR--TKKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIE 2794
             +   KK + A+AP I+ LPADK+AVIVMHK+MGL+M G ++D  V+VV+AA+ IGVAIE
Sbjct: 197  QKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVM-GAEEDGYVQVVQAAVHIGVAIE 255

Query: 2793 HEVRIHSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEF 2614
             EVRIHSFLEK++  QR+ IVDE QG +SKE  +LRKRV SLIRR R+ EVQKLV+NEE 
Sbjct: 256  QEVRIHSFLEKTKNYQRKQIVDEVQG-ASKEKEILRKRVNSLIRRRRLTEVQKLVKNEEI 314

Query: 2613 KSWGRDTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVK 2434
            K WGRD QAKLG  L+ELLT TAYVQPP++QS DSP DVRPAFRH FK  +R PGQ + K
Sbjct: 315  KPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKK 374

Query: 2433 RYGVIECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQ 2254
            RYGVIECDPL+ +GLD++ KHM+IPYVPMLVPPKKWKGYDKGGY FLPSY+MRTHGSR+Q
Sbjct: 375  RYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQ 434

Query: 2253 QDAVRTVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPE 2074
            Q+A++ V  K M+KV+EALDTLG+TKWRVN ++L VVESIWA GGNIAGLV+R D+PIPE
Sbjct: 435  QEALKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPE 494

Query: 2073 L-LSDDLEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRG 1897
               S+D   ++EWKWSVRKA K+NRERHSQRCD ELKLSVARK+++EEGFYYPHNLDFRG
Sbjct: 495  KPYSEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRG 554

Query: 1896 RAYPMHPHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISF 1717
            RAYPMHPHLNHLSSD+CRG+LEFA+GRPLG+SGLHWLKIHLANLY GGVEKLS+DGR++F
Sbjct: 555  RAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAF 614

Query: 1716 VENHLWDIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDG 1537
            V+NHL +IFDSA+ P+NGNRWWLTAEDPFQCLAAC+NLSEALKS+SPH+++S+LPIHQDG
Sbjct: 615  VDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDG 674

Query: 1536 SCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALV 1357
            SCNGLQHYAALGRD+ EAAAVNLVAGEKPADVYSEIAVRVH IMK+DSNKDPATNPNAL+
Sbjct: 675  SCNGLQHYAALGRDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALL 734

Query: 1356 AKLLLGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVT 1177
            AKLL+ QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDRLLFSAACY AKVT
Sbjct: 735  AKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVT 794

Query: 1176 LAALGELFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQV 997
            LAALGELFQAAR IMGWLGDCAK+IASENQPV WTTPLGLPVVQPY+K++RH+IRT+LQV
Sbjct: 795  LAALGELFQAARNIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQV 854

Query: 996  LALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDV 817
            LALQREG+SVEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV
Sbjct: 855  LALQREGNSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDV 914

Query: 816  DRMNQILRQKFVDLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            ++MNQILR+KFV+LY++PVLENLLESFET YP L FPPLP+RG+F+L +VL+SPYFFN
Sbjct: 915  EKMNQILREKFVELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLREVLKSPYFFN 972


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score = 1441 bits (3731), Expect = 0.0
 Identities = 723/998 (72%), Positives = 836/998 (83%), Gaps = 8/998 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKR-----HKNPDFLPMSPSELPIFCENPYLSS 3448
            +ASTA FSPSP+AQ +          +W++     HK   FL  S S   +F   P LS+
Sbjct: 1    MASTASFSPSPQAQTY--------SSTWRKPPKLSHK---FLFSSASNRLVF--KPSLST 47

Query: 3447 YSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSSNLTKTSSKRV 3268
              FP +L+ P      P+L+  + DS  DN VE   N  NLQL    F       S+ R+
Sbjct: 48   -PFPLSLQPPP----EPVLSHLVRDSVQDNLVE---NSMNLQLPIREFHLITPDESAPRI 99

Query: 3267 FIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMVEEY 3088
            FIQDPPW+++LF+K +  ++  +  +K+E +E++RRKY LLRRRQIK ETEAWE MVEEY
Sbjct: 100  FIQDPPWIAALFLKGMYKKANQE--LKLESKEIDRRKYNLLRRRQIKAETEAWERMVEEY 157

Query: 3087 KELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPAD 2908
            K+LER M EKKLAP+LPYVK L LGWFEPLR AI +EQ+  +TKKHK AFAP ID LP D
Sbjct: 158  KDLERVMREKKLAPSLPYVKTLFLGWFEPLREAIAREQQVQQTKKHKAAFAPHIDLLPPD 217

Query: 2907 KMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRD--I 2734
            KMA+IVMHK+MGL+M+G +D  CV+VV+AA+ IG+AIE EVRIHSFLEK++  QR+   +
Sbjct: 218  KMALIVMHKMMGLVMVGNQDG-CVQVVQAAVHIGMAIEQEVRIHSFLEKTKNFQRKKTAV 276

Query: 2733 VDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLT 2554
             DE   I  KE  +LRKRV  LI+R R+ EVQKL+  EEFK WGRDTQAKLG  LIELLT
Sbjct: 277  ADEDSLIKEKE--ILRKRVNVLIKRKRLREVQKLLVKEEFKPWGRDTQAKLGSRLIELLT 334

Query: 2553 HTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVK 2374
             TAYVQPP+NQ AD PPDVRPAFRH FK A + PGQ LVK YGVIECDPLVLTGLD+T K
Sbjct: 335  ETAYVQPPLNQLADGPPDVRPAFRHRFKAAAKTPGQKLVKNYGVIECDPLVLTGLDKTAK 394

Query: 2373 HMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALD 2194
            HM+IPYVPMLVPP+KWKGYDKGG+ FLPSY+MRTHGSR+Q D +R + GKQMQKV+EALD
Sbjct: 395  HMLIPYVPMLVPPRKWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGKQMQKVFEALD 454

Query: 2193 TLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELLS-DDLEVVKEWKWSVRKA 2017
             LG+TKWRVNK++L VVESIWA GGNIAGLV+REDVP+P+    + L  ++EWKWSVRKA
Sbjct: 455  MLGSTKWRVNKKVLNVVESIWARGGNIAGLVDREDVPVPDKPPLEGLTEIQEWKWSVRKA 514

Query: 2016 KKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGI 1837
            KKIN+ERHS RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+
Sbjct: 515  KKINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 574

Query: 1836 LEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNR 1657
            LEFA+GRPLGKSGL WLKIHLANLY GGVEKLSY+ R +FV++H+ DIFDSA  P+NGNR
Sbjct: 575  LEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEERHAFVDHHIDDIFDSATNPVNGNR 634

Query: 1656 WWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1477
            WWLTAEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 635  WWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAA 694

Query: 1476 VNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTS 1297
            VNLVAGEKPADVYSEIA RVHEIM++DSNKDP T+PNAL+A++L+ Q+DRKLVKQTVMTS
Sbjct: 695  VNLVAGEKPADVYSEIAARVHEIMERDSNKDPTTSPNALLARVLVNQIDRKLVKQTVMTS 754

Query: 1296 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 1117
            VYGVTYVGAREQIKRRLEEKG ITDDRLLF+AACYAAKVTLAALGE+FQAAR IMGWLGD
Sbjct: 755  VYGVTYVGAREQIKRRLEEKGFITDDRLLFTAACYAAKVTLAALGEIFQAARGIMGWLGD 814

Query: 1116 CAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 937
            CAK+IASENQPV WTTPLGLPVVQPY K +RH+IRTSLQVLALQRE +S++VRKQRTAFP
Sbjct: 815  CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRESNSIDVRKQRTAFP 874

Query: 936  PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVL 757
            PNFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVD+MN+ILR+KF++LY++P+L
Sbjct: 875  PNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHACDVDQMNEILREKFIELYSMPIL 934

Query: 756  ENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            ENLLESF+  YPAL+FPPLP+RGDF+L++VLESPYFFN
Sbjct: 935  ENLLESFQASYPALTFPPLPERGDFDLQEVLESPYFFN 972


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score = 1439 bits (3725), Expect = 0.0
 Identities = 718/979 (73%), Positives = 820/979 (83%), Gaps = 16/979 (1%)
 Frame = -3

Query: 3531 WKRHKNPDFLPMSPSELPIFCENPYLSSYSFPHTLKLPS--LRNSAPLLTP-----PLSD 3373
            W   K+P F    P +   F  NP   S S P ++   S  L +  PLL P     PL D
Sbjct: 14   WTTSKHPRF--HKPYKNLHFLSNPTSHSLSNPSSIYSSSFPLNSKFPLLNPSLPFHPLHD 71

Query: 3372 SADDNYVE--------SHQNLSNLQLIPNGFSSNLTKTSSKRVFIQDPPWVSSLFMKNLL 3217
            S+ D  +E        SHQ L  L      F   +   SSKRVFIQDPPW+S+ F K + 
Sbjct: 72   SSHDRLLEDFEIPTICSHQKLETLIK----FDQIMHGESSKRVFIQDPPWISAHFWKGV- 126

Query: 3216 FRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMVEEYKELEREMCEKKLAPNLP 3037
            ++  NK  VK+E++++E+RKY LLRRRQI+ ETEAWE M +EY+ L REMCE+KLAPNLP
Sbjct: 127  YKIANKK-VKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLP 185

Query: 3036 YVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMG 2857
            YVK L+LGWFEPL+ AIEKEQK  ++KK K+AF+P I+ LPADKMAVIVMHK+MGLLM+G
Sbjct: 186  YVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVG 245

Query: 2856 GKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDESQGISSKEALLLRKRV 2677
              +D CVRVV+AA+QIG+AIE EVRIH+FLEK++  QR+  + + Q    KE  +LRKRV
Sbjct: 246  -HEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRV 304

Query: 2676 KSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDV 2497
             SLIRR R++EVQ LV+ +E K W R TQAKLG  LIELLT TAYVQPPVNQS D PPDV
Sbjct: 305  NSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDV 364

Query: 2496 RPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGY 2317
            RPAFRH+FK  T+ PGQ +VK+YGVIECDPL+LTGLD T KHM+IPY PMLVPPKKWKGY
Sbjct: 365  RPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGY 424

Query: 2316 DKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLGNTKWRVNKRILGVVES 2137
            DKGG+ FLPSY+MRTHGSRQQQ AVR+VPGKQMQKV+EALDTLGNTKWRVN+R+L VVE 
Sbjct: 425  DKGGHLFLPSYIMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVER 484

Query: 2136 IWAGGGNIAGLVNREDVPIPEL-LSDDLEVVKEWKWSVRKAKKINRERHSQRCDMELKLS 1960
            IW  GGNIAGLV+RED+PIPE   SDDL  +++WKWSVRKAKKIN+ERHSQRCD ELKLS
Sbjct: 485  IWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLS 544

Query: 1959 VARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEFADGRPLGKSGLHWLKI 1780
            VARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CRG+LEF +GRPLGKSGL WLKI
Sbjct: 545  VARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKI 604

Query: 1779 HLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWLTAEDPFQCLAACINLS 1600
            HLANLY GGVEKLS+DGR++FVENHL +IFDSA  P+NG RWWL AEDPFQCLAACINLS
Sbjct: 605  HLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLS 664

Query: 1599 EALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEIAVR 1420
            EAL S+SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVA EKP+DVYSEIAVR
Sbjct: 665  EALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAAEKPSDVYSEIAVR 724

Query: 1419 VHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 1240
            VHEI+++DSNKDPATNP+AL+AK+L+ QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE
Sbjct: 725  VHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 784

Query: 1239 KGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVSWTTPLG 1060
            KG ITDDRLLFSAACY AKVTL ALGELFQAAR IM WLGDCAKIIASE+QPV WTTPLG
Sbjct: 785  KGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLG 844

Query: 1059 LPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIAC 880
            LPVVQPY+K +RH+I+TSLQ+LALQREG SV+VRKQRTAFPPNFVHSLDGSHMMMTA+AC
Sbjct: 845  LPVVQPYYKRERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVAC 904

Query: 879  RDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENLLESFETLYPALSFPPL 700
            RDAGL FAGVHDSFWTHA DVD MN+ILR+KFV+LYN+P+LENLLE F+T YP L FPPL
Sbjct: 905  RDAGLCFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPPL 964

Query: 699  PKRGDFNLEKVLESPYFFN 643
            P+RG+F+L+KVL SPYFFN
Sbjct: 965  PERGNFDLQKVLRSPYFFN 983


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score = 1437 bits (3720), Expect = 0.0
 Identities = 703/946 (74%), Positives = 810/946 (85%), Gaps = 1/946 (0%)
 Frame = -3

Query: 3477 IFCENPYLSSYSFPHTLKLPSLRNSAPLLTPPLSDSADDNYVESHQNLSNLQLIPNGFSS 3298
            +F +    SS  FP +L+ P      P+   PL+DS  DN VE+ +N    Q+       
Sbjct: 45   LFFKPSLSSSTHFPLSLRPPP----DPIQFHPLNDSVQDNLVENLENSIKFQV------- 93

Query: 3297 NLTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVET 3118
                 S  R+FIQDPPW++SLF+K + F+  NK  +K+E +E++RRKY LLRRRQIK ET
Sbjct: 94   ---PISEPRIFIQDPPWIASLFLKGM-FKKVNKE-LKVESKEIDRRKYNLLRRRQIKAET 148

Query: 3117 EAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAF 2938
            EAWE MVE+YK+LER M EKKLAP+LPYVK L LGWFEPLR AI KEQK+ +TKKHK AF
Sbjct: 149  EAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAF 208

Query: 2937 APFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKS 2758
            AP ID LPADKMA+IVMHK+MGL+MMG +D  CV+VV+AA+ IG+AIE EVRIHSFLEKS
Sbjct: 209  APHIDLLPADKMALIVMHKLMGLVMMGNQDG-CVQVVQAAVHIGMAIEQEVRIHSFLEKS 267

Query: 2757 RKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLG 2578
            +  QR+      +   SKE  +LRKRV  LIRR R++EVQKL++ E+ K WGRDTQAKLG
Sbjct: 268  KSLQRKKTSVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLG 327

Query: 2577 CCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVL 2398
              LIELLT TA+VQPP++Q AD PPDVRPAFRH  K A + PGQ LVK YGVIECDPLVL
Sbjct: 328  SRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVL 387

Query: 2397 TGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQM 2218
             GLD+T KHM+IPYVPMLVPPK+WKGYDKGG+ FLPSY+MRTHGSR+Q D +R + G+QM
Sbjct: 388  AGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQM 447

Query: 2217 QKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPELL-SDDLEVVKE 2041
            QKV+EALD LG+TKWR+NK++L VVESIWA GGNIAGLV+REDVP+PE   S+D   ++E
Sbjct: 448  QKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQE 507

Query: 2040 WKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHL 1861
            W+WS RKAKK+N+ERHSQRCD ELKLSVAR++KDE+GFYYPHNLDFRGRAYPMHPHLNHL
Sbjct: 508  WRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHL 567

Query: 1860 SSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSA 1681
            SSD+CRG+LEFA+GRPLGKSGL WLKIHLANLY GGVEKLSYDGRISFV+NH+ DIFDSA
Sbjct: 568  SSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSA 627

Query: 1680 DKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALG 1501
              P+NGNRWWLTAEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALG
Sbjct: 628  TNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALG 687

Query: 1500 RDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKL 1321
            RD+ EAAAVNLVAGEKPADVYSEIAVRVH+IMK+DSNKDP TNPNAL+AK+L+ Q+DRKL
Sbjct: 688  RDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKL 747

Query: 1320 VKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAAR 1141
            VKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR
Sbjct: 748  VKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAAR 807

Query: 1140 AIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEV 961
             IM WLGDCAK+IASENQPV WTTPLGLPVVQPY K++RH+IRTSLQVLALQRE + V+V
Sbjct: 808  GIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDV 867

Query: 960  RKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFV 781
            RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAG+RFAGVHDSFWTHACDVD+MNQILR+ FV
Sbjct: 868  RKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFV 927

Query: 780  DLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            +LY+ P+LENLLESF+  YP L+FPPLP+RGDF+L++VL+SPYFFN
Sbjct: 928  ELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1434 bits (3711), Expect = 0.0
 Identities = 712/956 (74%), Positives = 825/956 (86%), Gaps = 8/956 (0%)
 Frame = -3

Query: 3492 PSELPIFCENPYLSSYSFPHTLKLPSLRN-SAPLLTP---PLSDSADDNYVESHQNLSNL 3325
            P + P+F     L   +FP     P  R+ + P   P   PL DS  DN V++ +N   L
Sbjct: 24   PHKKPLFS----LPKQAFPLIFSFPIHRSLNYPTKPPRFLPLCDSLQDNIVQNIENPKKL 79

Query: 3324 QLIPNGFSSN-LTKTSSKRVFIQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYL 3148
             L+PN  S   L+  S+ R+FIQDPPW+S+LF K L ++  N++ VKIE++E+E+RKY L
Sbjct: 80   -LLPNAHSRQILSPESAPRIFIQDPPWISALFWKGL-YKMTNQT-VKIEHKEIEKRKYNL 136

Query: 3147 LRRRQIKVETEAWENMVEEYKELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKS 2968
            LRRRQ+K ETEAWE MVEEY+ELEREMCEKKLAPNLPYVK L LGWFEPLR AI KEQK 
Sbjct: 137  LRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKV 196

Query: 2967 LR--TKKHKTAFAPFIDALPADKMAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIE 2794
             +   KK + A+AP I+ LPADK+AVIVMHK+MGL+M G ++D  V+VV+AA+ IGVAIE
Sbjct: 197  QKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVM-GAEEDGYVQVVQAAVHIGVAIE 255

Query: 2793 HEVRIHSFLEKSRKCQRRDIVDESQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEF 2614
             EVRIHSFLEK++  QR+ IVDE QG +SKE  +LRKRV SLIRR R+ EVQKLV+NEE 
Sbjct: 256  QEVRIHSFLEKTKNYQRKQIVDEVQG-ASKEKEILRKRVNSLIRRRRLTEVQKLVKNEEI 314

Query: 2613 KSWGRDTQAKLGCCLIELLTHTAYVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVK 2434
            K WGRD QAKLG  L+ELLT TAYVQPP++QS DSP DVRPAFRH FK  +R PGQ + K
Sbjct: 315  KPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKK 374

Query: 2433 RYGVIECDPLVLTGLDRTVKHMIIPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQ 2254
            RYGVIECDPL+ +GLD++ KHM+IPYVPMLVPPKKWKGYDKGGY FLPSY+MRTHGSR+Q
Sbjct: 375  RYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQ 434

Query: 2253 QDAVRTVPGKQMQKVYEALDTLGNTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPE 2074
            Q+A++ V  K M+KV+EALDTLG+TKWRVN ++L VVESIWA GGNIAGLV+R D+PIPE
Sbjct: 435  QEALKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPE 494

Query: 2073 L-LSDDLEVVKEWKWSVRKAKKINRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRG 1897
               S+D   ++EWKWSVRKA K+NRERHSQRCD ELKLSVARK+++EEGFYYPHNLDFRG
Sbjct: 495  KPYSEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRG 554

Query: 1896 RAYPMHPHLNHLSSDVCRGILEFADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISF 1717
            RAYPMHPHLNHLSSD+CRG+LEFA+GRPLG+SGLHWLKIHLANLY GGVEKLS+DGR++F
Sbjct: 555  RAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAF 614

Query: 1716 VENHLWDIFDSADKPLNGNRWWLTAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDG 1537
            V+NHL +IFDSA+ P+NGNRWWLTAEDPFQCLAAC+NLSEALKS+SPH+++S+LPIHQDG
Sbjct: 615  VDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDG 674

Query: 1536 SCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALV 1357
            SCNGLQHYAALGRD+ EAAAVNLVAGEKPADVYSEIAVRVH IMK+DSNKDPATNPNAL+
Sbjct: 675  SCNGLQHYAALGRDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALL 734

Query: 1356 AKLLLGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVT 1177
            AKLL+ QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDRLLFSAACY AKVT
Sbjct: 735  AKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVT 794

Query: 1176 LAALGELFQAARAIMGWLGDCAKIIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQV 997
            LAALGELFQAAR IMGWLGDCAK+IASENQPV WTTPLGLPVVQPY+K++RH+IRT+LQV
Sbjct: 795  LAALGELFQAARNIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQV 854

Query: 996  LALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDV 817
            LALQREG+SVEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV
Sbjct: 855  LALQREGNSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDV 914

Query: 816  DRMNQILRQKFVDLYNIPVLENLLESFETLYPALSFPPLPKRGDFNLEKVLESPYF 649
            ++MNQILR+KFV+LY++PVLENLLESFET YP L FPPLP+RG+F+L+ VL   +F
Sbjct: 915  EKMNQILREKFVELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLQTVLACTFF 970


>ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Populus
            euphratica]
          Length = 982

 Score = 1432 bits (3708), Expect = 0.0
 Identities = 721/995 (72%), Positives = 828/995 (83%), Gaps = 5/995 (0%)
 Frame = -3

Query: 3612 LASTAPFSPSPRAQLHLPXXXXXXXXSWKRHKNPDFLPMSPSELPIFCENPYLSSYSFPH 3433
            +AST PFS       H            + +KN  FL  +PS   +   NP+LSS SFP 
Sbjct: 1    MASTPPFSIQ-----HPTWTTSKTLKFHEPYKNLHFLS-NPSSHSL--SNPFLSSSSFPL 52

Query: 3432 TLKLPSLRNSAPLLTPPLSDSADDNYVESHQ--NLSNLQLIPN--GFSSNLTKTSSKRVF 3265
              KL  L  + PLL  PL DS+ D  +E  +   ++N Q +     F   +   SSKRVF
Sbjct: 53   NPKLSIL--NPPLLFHPLHDSSHDRLLEDFEIPTINNHQKLETLIKFDQIVHGESSKRVF 110

Query: 3264 IQDPPWVSSLFMKNLLFRSRNKSGVKIEYQEMERRKYYLLRRRQIKVETEAWENMVEEYK 3085
            I+D PW+S+L+ K    +  NK  VK+E +++E+RKY LLRRRQI+ ETEAWE M EEY 
Sbjct: 111  IRDSPWISALYWKGT-HKIANKK-VKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYT 168

Query: 3084 ELEREMCEKKLAPNLPYVKKLILGWFEPLRAAIEKEQKSLRTKKHKTAFAPFIDALPADK 2905
             L +EMCE+KLAPNLPYVK L LGWFEPL+ AIE+EQK  ++KK K+AF+P+I+ LPADK
Sbjct: 169  GLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPYIELLPADK 228

Query: 2904 MAVIVMHKIMGLLMMGGKDDRCVRVVEAAIQIGVAIEHEVRIHSFLEKSRKCQRRDIVDE 2725
            MAVIVMHK+MGL+M+G  +D CVRVV+AA+QIG+AIE EVRIH+FLEK++  QR+  + +
Sbjct: 229  MAVIVMHKMMGLVMVG-HEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHD 287

Query: 2724 SQGISSKEALLLRKRVKSLIRRNRVLEVQKLVRNEEFKSWGRDTQAKLGCCLIELLTHTA 2545
             Q    KE  +LRKRV SLIRR R++EVQ LV  +E K W RD QAKLG  LIELLT TA
Sbjct: 288  VQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWSRDKQAKLGSRLIELLTETA 347

Query: 2544 YVQPPVNQSADSPPDVRPAFRHLFKIATREPGQNLVKRYGVIECDPLVLTGLDRTVKHMI 2365
            YVQPP +QS   PPDVRPAFRH+FK  T+ PGQ  VK+YGVIECDPL+LTGLD T KHM+
Sbjct: 348  YVQPPADQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHML 407

Query: 2364 IPYVPMLVPPKKWKGYDKGGYFFLPSYLMRTHGSRQQQDAVRTVPGKQMQKVYEALDTLG 2185
            IPY PMLVPPKKW+GYDKGG+ FLPSY+MRTHGSRQQQDAVR+VPGKQMQKV+EALDTLG
Sbjct: 408  IPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLG 467

Query: 2184 NTKWRVNKRILGVVESIWAGGGNIAGLVNREDVPIPEL-LSDDLEVVKEWKWSVRKAKKI 2008
            NTKWRVN ++L VVE IWA GGN AGLVNR D+PIPE   SDDL  +++WKWSVRKAKKI
Sbjct: 468  NTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKPSSDDLTEIQKWKWSVRKAKKI 527

Query: 2007 NRERHSQRCDMELKLSVARKIKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGILEF 1828
            N+ERHSQRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CRG+LEF
Sbjct: 528  NQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEF 587

Query: 1827 ADGRPLGKSGLHWLKIHLANLYGGGVEKLSYDGRISFVENHLWDIFDSADKPLNGNRWWL 1648
            A+GRPLGKSGL WLKIHLANLY GGVEKLS+DGR++FVENHL +IFDSA+ P+NG RWWL
Sbjct: 588  AEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWL 647

Query: 1647 TAEDPFQCLAACINLSEALKSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 1468
            TAEDPFQCLAACINLSEALKS+SPHTV+SHLPIHQDGSCNGLQHYAALG DS EAAAVNL
Sbjct: 648  TAEDPFQCLAACINLSEALKSTSPHTVISHLPIHQDGSCNGLQHYAALGGDSQEAAAVNL 707

Query: 1467 VAGEKPADVYSEIAVRVHEIMKKDSNKDPATNPNALVAKLLLGQVDRKLVKQTVMTSVYG 1288
            VA EKP+DVYSEIA RVHEI++KDSNKDPATNP+AL+AK+L+ +VDRKLVKQTVMTSVYG
Sbjct: 708  VAAEKPSDVYSEIAARVHEIIRKDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYG 767

Query: 1287 VTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCAK 1108
            VTYVGAREQIKRRLEEKG ITDDRLLFSAACYAAKVTL ALGELFQAAR IMGWLGDCAK
Sbjct: 768  VTYVGAREQIKRRLEEKGHITDDRLLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAK 827

Query: 1107 IIASENQPVSWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPNF 928
            +IASE+QPV WTTPLGLPVVQPY+KTQRH+IRTSLQVLALQREG SV+VRKQRTAFPPNF
Sbjct: 828  VIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNF 887

Query: 927  VHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNIPVLENL 748
            VHSLDGSHMMMTA+ACRDA LRFAGVHDSFWTHA DVD MN+ILR+KFV+LYN+P+LENL
Sbjct: 888  VHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILENL 947

Query: 747  LESFETLYPALSFPPLPKRGDFNLEKVLESPYFFN 643
            LE F+T YP L FP LP+RG+F+L++VL SPYFFN
Sbjct: 948  LEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982