BLASTX nr result
ID: Forsythia22_contig00010395
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00010395
(1131 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 177 5e-79
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 156 8e-72
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 157 2e-71
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 163 2e-70
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 173 4e-67
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 154 9e-67
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 154 9e-67
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 153 2e-66
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 157 1e-65
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 152 2e-65
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 136 2e-64
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 155 9e-64
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 154 6e-63
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 172 1e-62
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 155 3e-62
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 173 3e-60
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 161 1e-59
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 124 5e-54
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 155 8e-54
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 134 2e-51
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 177 bits (449), Expect(3) = 5e-79
Identities = 95/192 (49%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNG+AERMN T++ +V CML SSGL+K FWAEA TA +LINRSPSS++ FKTPQE W
Sbjct: 548 PQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKW 607
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
+GK+ D H++VFGC AY H KL+PRA KC+ LGYP+GVKGY+LW+ K I S
Sbjct: 608 TGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIIS 667
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQI-DPQVET 584
RDV FNE DM +TP V+ + +F +V E +PE+ + +T
Sbjct: 668 RDVTFNEQDM-SKQTPAKDVEGLDQLQF-------------EVEHETLQPEKSKETSSKT 713
Query: 583 EQEEVLDQPELE 548
QEE++ + + E
Sbjct: 714 AQEEIVHERQNE 725
Score = 131 bits (329), Expect(3) = 5e-79
Identities = 61/130 (46%), Positives = 89/130 (68%)
Frame = -1
Query: 498 LRDYQLVRGKKRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWKKA 319
L Y LVR +++ V+P +Y + + F L E + +EP +Y+EA+N ++ W KA
Sbjct: 730 LESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKA 789
Query: 318 MREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEV 139
++E++ SL KN+TW+LV +PK++KVV KW++K K+G N+ RYKARLV KGF+QKE
Sbjct: 790 IQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEG 849
Query: 138 VDYNEIFCKV 109
VDYNEIF V
Sbjct: 850 VDYNEIFSPV 859
Score = 36.6 bits (83), Expect(3) = 5e-79
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR++LA V D EL+Q L VK AFL+GELD
Sbjct: 860 VKHSSIRLLLAFVAHEDLELDQ--LDVKTAFLHGELD 894
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 156 bits (395), Expect(3) = 8e-72
Identities = 87/201 (43%), Positives = 123/201 (61%), Gaps = 6/201 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVA+RMN T+M KV CML SGL + FWAEA TAAYLI+RSP+S+++ P+ELW
Sbjct: 505 PQQNGVADRMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLISRSPASAIDHNVPEELW 564
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
K P H+R FG AY H +GKL PRA K + +GYP G KGY++W+L + K + S
Sbjct: 565 LNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPSGTKGYKIWLLEEQ--KCVIS 622
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNL------EVREPEQID 599
R+V F+E ++ T + + E E ++ K + NL +V + E+ D
Sbjct: 623 RNVLFHE-ELVYKDTIEKERVVESEAEPASHSKSTLIKMKTPGNLNSGGVIQVSDEEESD 681
Query: 598 PQVETEQEEVLDQPELEIPES 536
V+ EQE +P++E+PE+
Sbjct: 682 ESVDEEQE---PEPQVELPET 699
Score = 132 bits (333), Expect(3) = 8e-72
Identities = 61/132 (46%), Positives = 92/132 (69%)
Frame = -1
Query: 504 TNLRDYQLVRGKKRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWK 325
++L +YQLVR ++R + P ++T + + F LV+ E L EP SY+EA + K + WK
Sbjct: 703 SSLANYQLVRDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWK 762
Query: 324 KAMREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQK 145
A E+ +SL KN TW LV++PK++K++ C+W++K+K G+ +P+RYKARLV KG+TQ+
Sbjct: 763 LATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQR 822
Query: 144 EVVDYNEIFCKV 109
E VDY EIF V
Sbjct: 823 EGVDYQEIFAPV 834
Score = 31.6 bits (70), Expect(3) = 8e-72
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2
Query: 113 KYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
K+T IRI++++V D EL Q + VK FL+GEL+
Sbjct: 836 KHTSIRILMSVVVDQDLELEQ--MDVKTTFLHGELE 869
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 157 bits (398), Expect(3) = 2e-71
Identities = 90/200 (45%), Positives = 123/200 (61%), Gaps = 5/200 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T+M KV CML SGL + FWAEA TAAYLINRSP+S+++ P+ELW
Sbjct: 605 PQQNGVAERMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLINRSPASAIDHNVPEELW 664
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
K P H+R FG AY H +GKL PRA K + +GYP G KGY++W+L + K + S
Sbjct: 665 LNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLL--EEHKCVIS 722
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRL-DVN----LEVREPEQIDP 596
R+V F+E + +V +S S K +VK ++N ++V + E+ D
Sbjct: 723 RNVLFHEESVYKDTMKKERVVESEAEPASHSKSTLIKVKTPGNLNSGEVIQVSDEEESDE 782
Query: 595 QVETEQEEVLDQPELEIPES 536
VE EQE + ++E+PE+
Sbjct: 783 SVEEEQE---PETQVELPET 799
Score = 127 bits (319), Expect(3) = 2e-71
Identities = 59/132 (44%), Positives = 89/132 (67%)
Frame = -1
Query: 504 TNLRDYQLVRGKKRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWK 325
++L +YQL R ++R + P ++T + + F LV+ E L EP SY+EA + K + WK
Sbjct: 803 SSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWK 862
Query: 324 KAMREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQK 145
A E++ SL KN TW LV++P+N+K++ C+W++KLK G +P+RYKA+LV KG+T +
Sbjct: 863 LATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHR 922
Query: 144 EVVDYNEIFCKV 109
E VDY EIF V
Sbjct: 923 EGVDYQEIFALV 934
Score = 34.7 bits (78), Expect(3) = 2e-71
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK+T IRI++++V D EL Q + VK AFL+GEL+
Sbjct: 935 VKHTSIRILMSVVVDQDLELEQ--MDVKTAFLHGELE 969
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 163 bits (413), Expect(3) = 2e-70
Identities = 87/183 (47%), Positives = 120/183 (65%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN TL+ + CML ++GL + FWAEA+ TA YLINR P + + KTP E+W
Sbjct: 568 PQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMW 627
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SGK+ D S+++ FGC AY H EGKL+PRA K V +GY +GVKG+R+W K ++I S
Sbjct: 628 SGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMS 685
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDPQVETE 581
R+V F+E P L+T S G S K+++ +V + + +L+ E E +PQ ET+
Sbjct: 686 RNVVFDE--SPLLRTIVKPTTTSETG--SLDKQVEFQVIQNESDLKEPEEEDQEPQTETD 741
Query: 580 QEE 572
E
Sbjct: 742 IPE 744
Score = 119 bits (297), Expect(3) = 2e-70
Identities = 52/120 (43%), Positives = 82/120 (68%)
Frame = -1
Query: 468 KRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWKKAMREKIHSLGK 289
+R+ VRP +Y +++ + L E +++ EP +Y+EA+ +SE W AM +++ SL K
Sbjct: 760 RRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHK 819
Query: 288 NDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDYNEIFCKV 109
N TW LV +P +K++ CKW++K KEG+ P + ++YKAR+V +GF Q+E VDYNEIF V
Sbjct: 820 NQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPV 879
Score = 34.3 bits (77), Expect(3) = 2e-70
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
V++T IR++LA+V + EL Q L VK AFL+GEL+
Sbjct: 880 VRHTSIRVLLAIVAHQNLELEQ--LDVKTAFLHGELE 914
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 173 bits (438), Expect(2) = 4e-67
Identities = 88/187 (47%), Positives = 121/187 (64%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN TL+ + CM I +GL+K FWAEA+ TAAYL+NRSPS++++FKTPQE+W
Sbjct: 689 PQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVW 748
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SGK + S +++FGC AYAH +GKL+PRA KC+ LGY GVKGYRLW + K I S
Sbjct: 749 SGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIIS 808
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDPQVETE 581
RDV F+E M + + + + + +K++ EV P + +E
Sbjct: 809 RDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVE---------FEVDAPMENGVDDTSE 859
Query: 580 QEEVLDQ 560
++ V+DQ
Sbjct: 860 EQPVIDQ 866
Score = 110 bits (276), Expect(2) = 4e-67
Identities = 52/127 (40%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Frame = -1
Query: 471 KKRIHVRPNLKYTS------SNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWKKAMRE 310
+ R +R ++Y +N + F L E + EP SY+EA+ K+S+ W +M +
Sbjct: 876 RPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDD 935
Query: 309 KIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDY 130
++ SL KN TW+LV P+ K V CKW++K+K+G+ ++P +YK+RLV KGF+QKE +DY
Sbjct: 936 EMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDY 995
Query: 129 NEIFCKV 109
NE+F V
Sbjct: 996 NEVFSPV 1002
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 154 bits (388), Expect(3) = 9e-67
Identities = 91/212 (42%), Positives = 125/212 (58%), Gaps = 9/212 (4%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T++++ CML + + K FWAEA TA YLINRSPS +N KTP E+W
Sbjct: 582 PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 641
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG D S ++VFGC AYAH GKL+PRA KC+ LGY GVKGY+LW + K S
Sbjct: 642 SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMS 699
Query: 760 RDVKFNEL-----DMPCLKTPDNQVK----QSGEGEFSTGKKIQTEVKRLDVNLEVREPE 608
R V FNE +P P+ +++ Q + TG +++ ++ D N +V + +
Sbjct: 700 RSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDD 759
Query: 607 QIDPQVETEQEEVLDQPELEIPESVIPNLRTT 512
D + +Q + Q E E+P + + RTT
Sbjct: 760 AHD---DVQQTPPILQLEEELPIAQRKSKRTT 788
Score = 117 bits (292), Expect(3) = 9e-67
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Frame = -1
Query: 477 RGKKRIHVRPNLKYTSSNLMEFVLVSGEALESV-EPVSYEEAVNCKNSENWKKAMREKIH 301
R KR P NL + L E +E+V EP +Y+EAV C +SENW AM E++
Sbjct: 782 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841
Query: 300 SLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDYNEI 121
SL KN TW++V PK +K + CKWI+K KEG+ ++P +YKARLV +G++Q VDYN++
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 120 FCKV 109
F V
Sbjct: 902 FSPV 905
Score = 33.1 bits (74), Expect(3) = 9e-67
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR L++V D EL Q L VK AFL+GEL+
Sbjct: 906 VKHSSIRTFLSIVASHDLELEQ--LDVKTAFLHGELE 940
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 154 bits (388), Expect(3) = 9e-67
Identities = 91/212 (42%), Positives = 125/212 (58%), Gaps = 9/212 (4%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T++++ CML + + K FWAEA TA YLINRSPS +N KTP E+W
Sbjct: 582 PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 641
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG D S ++VFGC AYAH GKL+PRA KC+ LGY GVKGY+LW + K S
Sbjct: 642 SGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMS 699
Query: 760 RDVKFNEL-----DMPCLKTPDNQVK----QSGEGEFSTGKKIQTEVKRLDVNLEVREPE 608
R V FNE +P P+ +++ Q + TG +++ ++ D N +V + +
Sbjct: 700 RSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDD 759
Query: 607 QIDPQVETEQEEVLDQPELEIPESVIPNLRTT 512
D + +Q + Q E E+P + + RTT
Sbjct: 760 AHD---DVQQTPPILQLEEELPIAQRKSKRTT 788
Score = 117 bits (292), Expect(3) = 9e-67
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Frame = -1
Query: 477 RGKKRIHVRPNLKYTSSNLMEFVLVSGEALESV-EPVSYEEAVNCKNSENWKKAMREKIH 301
R KR P NL + L E +E+V EP +Y+EAV C +SENW AM E++
Sbjct: 782 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841
Query: 300 SLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDYNEI 121
SL KN TW++V PK +K + CKWI+K KEG+ ++P +YKARLV +G++Q VDYN++
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 120 FCKV 109
F V
Sbjct: 902 FSPV 905
Score = 33.1 bits (74), Expect(3) = 9e-67
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR L++V D EL Q L VK AFL+GEL+
Sbjct: 906 VKHSSIRTFLSIVASHDLELEQ--LDVKTAFLHGELE 940
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 153 bits (386), Expect(3) = 2e-66
Identities = 91/212 (42%), Positives = 125/212 (58%), Gaps = 9/212 (4%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T++++ CML + + K FWAEA TA YLINRSPS +N KTP E+W
Sbjct: 582 PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 641
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG D S ++VFGC AYAH GKL+PRA KC+ LGY GVKGY+LW + K S
Sbjct: 642 SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMS 699
Query: 760 RDVKFNEL-----DMPCLKTPDNQVK----QSGEGEFSTGKKIQTEVKRLDVNLEVREPE 608
R V FNE +P P+ +++ Q + TG +++ ++ D N +V + +
Sbjct: 700 RSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDD 759
Query: 607 QIDPQVETEQEEVLDQPELEIPESVIPNLRTT 512
D + +Q + Q E E+P + + RTT
Sbjct: 760 AHD---DVQQTPPILQLEEELPIAQRKSKRTT 788
Score = 117 bits (292), Expect(3) = 2e-66
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Frame = -1
Query: 477 RGKKRIHVRPNLKYTSSNLMEFVLVSGEALESV-EPVSYEEAVNCKNSENWKKAMREKIH 301
R KR P NL + L E +E+V EP +Y+EAV C +SENW AM E++
Sbjct: 782 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841
Query: 300 SLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDYNEI 121
SL KN TW++V PK +K + CKWI+K KEG+ ++P +YKARLV +G++Q VDYN++
Sbjct: 842 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901
Query: 120 FCKV 109
F V
Sbjct: 902 FSPV 905
Score = 33.1 bits (74), Expect(3) = 2e-66
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR L++V D EL Q L VK AFL+GEL+
Sbjct: 906 VKHSSIRTFLSIVASHDLELEQ--LDVKTAFLHGELE 940
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 157 bits (397), Expect(2) = 1e-65
Identities = 89/205 (43%), Positives = 129/205 (62%), Gaps = 13/205 (6%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNG+AERMN TL++K CMLI+S L + FWAEA+ TA+YL+NRSPSS++ FKTP+ELW
Sbjct: 580 PQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELW 639
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
+GK + ++RVFGC AY H +GKL+ RA K V +GYP+GVKGY++W K I S
Sbjct: 640 NGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG--KCIVS 697
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEF------STGKKIQTEVKRLDVNL-----EVRE 614
RDV F+E + +K+S E + + K+ +E +++V L +E
Sbjct: 698 RDVVFHESVL---------LKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKE 748
Query: 613 PEQIDPQ--VETEQEEVLDQPELEI 545
D + E+E+ EV + P+ ++
Sbjct: 749 AASDDERATAESEEHEVSELPQADL 773
Score = 121 bits (304), Expect(2) = 1e-65
Identities = 53/136 (38%), Positives = 91/136 (66%)
Frame = -1
Query: 516 QLEDTNLRDYQLVRGKKRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNS 337
+L +L++YQL R + R VR ++Y ++L+ + L+ + + EP ++ EA+ +
Sbjct: 767 ELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHC 826
Query: 336 ENWKKAMREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKG 157
+ W +AM++++ SL +N TW L+ P N+++++CKWI+K EG+ +P +YKARLV +G
Sbjct: 827 DKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARG 886
Query: 156 FTQKEVVDYNEIFCKV 109
FTQ+E VD+NEIF V
Sbjct: 887 FTQREGVDFNEIFSPV 902
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 152 bits (384), Expect(3) = 2e-65
Identities = 94/223 (42%), Positives = 126/223 (56%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T++++ CML + + K FWAEA TA YLINRSPS +N KTP E+W
Sbjct: 584 PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 643
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG D S ++VFGC AYAH GKL+PRA KC+ LGY GVKGY+LW + K S
Sbjct: 644 SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMS 701
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDPQVETE 581
R V FNE M P V + +++ +V+ +D + V + E +D Q +
Sbjct: 702 RSVVFNESVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGV-QVEPVDEQ-DDH 753
Query: 580 QEEVLDQPELEIPESVIPNLRTT*RY*FERLSISER*KENTCK 452
+V D + + P L+ E LSI++R + T K
Sbjct: 754 NNDVADDDAHDDVQQTPPILQLE-----EDLSIAQRKSKRTTK 791
Score = 114 bits (284), Expect(3) = 2e-65
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = -1
Query: 477 RGKKRIHVRPNLKYTSSNLMEFVLVSGEALESV-EPVSYEEAVNCKNSENWKKAMREKIH 301
R KR P NL + L E +E+V EP +Y+EAV C +SENW AM E++
Sbjct: 784 RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 843
Query: 300 SLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDYNEI 121
SL KN TW++V PK +K + CKWI+K KE + ++P +YKARLV +G++Q VDYN++
Sbjct: 844 SLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDV 903
Query: 120 FCKV 109
F V
Sbjct: 904 FSPV 907
Score = 33.1 bits (74), Expect(3) = 2e-65
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR L++V D EL Q L VK AFL+GEL+
Sbjct: 908 VKHSSIRTFLSIVASHDLELEQ--LDVKTAFLHGELE 942
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 136 bits (343), Expect(3) = 2e-64
Identities = 81/199 (40%), Positives = 111/199 (55%), Gaps = 19/199 (9%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T+M KV C+L SGL + FWAE TA Y+INRSPS++++ P+ELW
Sbjct: 278 PQQNGVAERMNRTVMEKVRCLLNESGLEEEFWAEVATTAVYIINRSPSAAIDHNVPEELW 337
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
+ P H+R AY H +GKL PRA K + +GYP G KGY++W+L + K + S
Sbjct: 338 LNRKPGYKHLRRLRAVAYVHVDQGKLKPRAIKGIFIGYPSGTKGYKVWLLEEQ--KCVIS 395
Query: 760 RDVKFNELDM--------PCLKTPDNQVKQSGEGEFSTGKKIQ--------TEVKRLDVN 629
R+V F E + +K D + + S K++ E + D N
Sbjct: 396 RNVIFQEEVVYKDLNDKETVVKKEDIRTQTDNHLVISKTKEVSDQGGVTHIEECEESDEN 455
Query: 628 LEVREPEQI---DPQVETE 581
E +EPE + DP VE+E
Sbjct: 456 DE-QEPETVNETDPTVESE 473
Score = 126 bits (316), Expect(3) = 2e-64
Identities = 59/131 (45%), Positives = 86/131 (65%)
Frame = -1
Query: 501 NLRDYQLVRGKKRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWKK 322
+L +YQL + + R + P ++T + + F LV E+L EP SY+EA K WK
Sbjct: 475 SLANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKN 534
Query: 321 AMREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKE 142
A E++ SL KN TW LV++P N+K++ C+W++KLK G+ +P+R+KARLV KG+TQ+E
Sbjct: 535 ATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQRE 594
Query: 141 VVDYNEIFCKV 109
VDY EIF V
Sbjct: 595 GVDYQEIFAPV 605
Score = 33.1 bits (74), Expect(3) = 2e-64
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK+T IR+++++V D EL Q + VK AFL+G+L+
Sbjct: 606 VKHTSIRVLMSVVVDQDMELEQ--MDVKTAFLHGDLE 640
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 155 bits (391), Expect(3) = 9e-64
Identities = 85/182 (46%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQN VAERMN T+++K CML ++GL K FWAEA+ TA YLINRSP +++ KTP E+W
Sbjct: 562 PQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVW 621
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG + S +RVFGC AYAH GKL+PRA KC+ LGY GVKGY+LW K K++ S
Sbjct: 622 SGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETK--KVVIS 679
Query: 760 RDVKFNEL----DMPCLKTP-DNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDP 596
R+V F+E D P P ++Q K S + E E + + +N + E D
Sbjct: 680 RNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDS 739
Query: 595 QV 590
+
Sbjct: 740 SI 741
Score = 105 bits (263), Expect(3) = 9e-64
Identities = 49/127 (38%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
Frame = -1
Query: 483 LVRGKKRIHVRPNLKYTS-SNLMEFVLVSGEALE-SVEPVSYEEAVNCKNSENWKKAMRE 310
+ + K + +++P +Y + ++ + L E +E + EP +Y EA+ + W AM +
Sbjct: 750 IAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHD 809
Query: 309 KIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDY 130
++ SL KN TW+LV+ PK +K + CKWI+K KEG+ P+D RYKARLV KG++Q +D+
Sbjct: 810 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 869
Query: 129 NEIFCKV 109
N++F V
Sbjct: 870 NDVFSPV 876
Score = 33.1 bits (74), Expect(3) = 9e-64
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR +L +V D EL Q + VK AFL+GEL+
Sbjct: 877 VKHSSIRTLLGIVAMHDYELEQ--MNVKTAFLHGELE 911
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 154 bits (388), Expect(2) = 6e-63
Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 3/186 (1%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T+MNKV CML SGL K FWAEA TA +LIN+SPSSS+ F P+E W
Sbjct: 583 PQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKW 642
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
+G PD ++ FG AY H +GKL+PRA K + LGYP+GVK +++W+L + K + S
Sbjct: 643 TGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLL--EDRKCVVS 700
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDV---NLEVREPEQIDPQV 590
RD+ F E M K+ + + S K TEV+R + NL + Q +
Sbjct: 701 RDIVFQENQM---------YKELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGD 751
Query: 589 ETEQEE 572
+ QE+
Sbjct: 752 NSNQEQ 757
Score = 116 bits (290), Expect(2) = 6e-63
Identities = 57/136 (41%), Positives = 85/136 (62%), Gaps = 2/136 (1%)
Frame = -1
Query: 510 EDTNLRDYQLVRGKKRIHVRPNLKYTSSN--LMEFVLVSGEALESVEPVSYEEAVNCKNS 337
+D L +Y L R + R +R ++ + L+ F L E E EP +YEEA+
Sbjct: 776 DDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPEC 835
Query: 336 ENWKKAMREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKG 157
E WK+A E++ S+ KNDTW ++++P+ ++V+ CKWI+K K G+ +P RYKARLV KG
Sbjct: 836 EKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKG 895
Query: 156 FTQKEVVDYNEIFCKV 109
F+Q+E +DY EIF V
Sbjct: 896 FSQREGIDYQEIFSPV 911
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttatus]
Length = 598
Score = 172 bits (437), Expect(2) = 1e-62
Identities = 95/190 (50%), Positives = 114/190 (60%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN TL+ +V ML SSGL K FW EA+ TA YLINRSPS +N P+ +W
Sbjct: 304 PQQNGVAERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGDLPESVW 363
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
GK DLS++ VFG AA+ H KL+PR KC+ LGYP+GVKGYRLW+ G G KII S
Sbjct: 364 CGKKVDLSNLHVFGYAAFVHHKGDKLEPRFVKCIFLGYPDGVKGYRLWLKGDFGYKIIIS 423
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDPQVETE 581
RDV FNE PCL P+ + QS E Q +K DV+ D VE
Sbjct: 424 RDVIFNESGFPCLAVPNVVIPQSTPNEVE-----QLPIKSDDVSDSELSENLQDQTVELP 478
Query: 580 QEEVLDQPEL 551
+ L +L
Sbjct: 479 NVDDLSDYQL 488
Score = 96.3 bits (238), Expect(2) = 1e-62
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = -1
Query: 501 NLRDYQLVRGK-KRIHVRPNLKYTSSNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWK 325
+L DYQL R + +R HVR + +L V E+L+ EP SY++A+ S W
Sbjct: 482 DLSDYQLARDRPRREHVRKPKHFDDFHLASHVFNVFESLDGNEPKSYKDALKSDKSTEWL 541
Query: 324 KAMREKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQK 145
+M ++++SL N TW+LV +P N VV C W++K+K V D ++YKARLV KGFTQK
Sbjct: 542 NSMNDEMNSLHVNQTWELVPKPVNCSVVDCNWLFKVKNEV---DSIKYKARLVAKGFTQK 598
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 155 bits (391), Expect(3) = 3e-62
Identities = 87/192 (45%), Positives = 115/192 (59%), Gaps = 5/192 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T+++K CML ++ L K FWAEA+ TA YLINRSPS +++ KTP E+W
Sbjct: 499 PQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVW 558
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG + S +RVFGC AYAH GKL+PR KC+ LGY GVKGY+LW K K++ S
Sbjct: 559 SGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK--KVVIS 616
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQI-----DP 596
R+V F+E M K N +S E K+ +V+ L + E E + P
Sbjct: 617 RNVVFHESIMLHDKPSTNVPVESQE-------KVSVQVEHLISSGHAPEKEDVAINQDAP 669
Query: 595 QVETEQEEVLDQ 560
+E ++ Q
Sbjct: 670 VIEDSDSSIVQQ 681
Score = 100 bits (250), Expect(3) = 3e-62
Identities = 46/127 (36%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Frame = -1
Query: 483 LVRGKKRIHVRPNLKYTS-SNLMEFVLVSGEALE-SVEPVSYEEAVNCKNSENWKKAMRE 310
+ + + + + +P +Y +N++ + L E +E + EP +Y +A+ + W AM +
Sbjct: 687 IAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHD 746
Query: 309 KIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDY 130
++ SL KN +W+L + PK +K + CKWI+K KEG+ P+D RYKARLV KG++Q +D+
Sbjct: 747 EMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 806
Query: 129 NEIFCKV 109
N++F V
Sbjct: 807 NDVFSPV 813
Score = 33.1 bits (74), Expect(3) = 3e-62
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR +L++V D EL Q + VK AFL+GEL+
Sbjct: 814 VKHSSIRTLLSIVAMHDYELEQ--MDVKTAFLHGELE 848
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 173 bits (438), Expect(2) = 3e-60
Identities = 88/187 (47%), Positives = 121/187 (64%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN TL+ + CM I +GL+K FWAEA+ TAAYL+NRSPS++++FKTPQE+W
Sbjct: 902 PQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVW 961
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SGK + S +++FGC AYAH +GKL+PRA KC+ LGY GVKGYRLW + K I S
Sbjct: 962 SGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIIS 1021
Query: 760 RDVKFNELDMPCLKTPDNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDPQVETE 581
RDV F+E M + + + + + +K++ EV P + +E
Sbjct: 1022 RDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVE---------FEVDAPMENGVDDTSE 1072
Query: 580 QEEVLDQ 560
++ V+DQ
Sbjct: 1073 EQPVIDQ 1079
Score = 88.2 bits (217), Expect(2) = 3e-60
Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Frame = -1
Query: 471 KKRIHVRPNLKYTS------SNLMEFVLVSGEALESVEPVSYEEAVNCKNSENWKKAMRE 310
+ R +R ++Y +N + F L E + EP SY+EA+ K+S+ W +M +
Sbjct: 1089 RPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDD 1148
Query: 309 KIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFT 151
++ SL KN TW+LV P+ K V CKW++K+K+G+ ++P +YK+RLV K F+
Sbjct: 1149 EMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKSRLVAKVFS 1201
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 161 bits (407), Expect(3) = 1e-59
Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 5/182 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T+++K CML ++GL K FWAEA+ TA YLINRSPS +++ KTP ++W
Sbjct: 551 PQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVW 610
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG + S +RVFGC AYAH KL+PRA KC+ LGYP GVKGY+LW K K++ S
Sbjct: 611 SGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 668
Query: 760 RDVKFNEL----DMPCLKTP-DNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDP 596
R+V F+E D P P ++Q K S + E E + + +NL+ E D
Sbjct: 669 RNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDS 728
Query: 595 QV 590
+
Sbjct: 729 SI 730
Score = 87.4 bits (215), Expect(3) = 1e-59
Identities = 40/107 (37%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = -1
Query: 489 YQLVRGKKRIHVRPNLKYTS-SNLMEFVLVSGEALE-SVEPVSYEEAVNCKNSENWKKAM 316
+ + + K + +++P +Y +N++ + L E +E +VEP +Y +A+ + W AM
Sbjct: 737 HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 796
Query: 315 REKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKA 175
+++ SL KN TW+LV+ PK +K + CKWI+K KEG+ P+D RYKA
Sbjct: 797 HDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 843
Score = 31.6 bits (70), Expect(3) = 1e-59
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2
Query: 113 KYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
K + IR +L++V +D EL Q + VK AFL+GEL+
Sbjct: 842 KASSIRTLLSIVAMYDYELEQ--MDVKTAFLHGELE 875
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 124 bits (312), Expect(3) = 5e-54
Identities = 69/156 (44%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Frame = -3
Query: 1051 SSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELWSGKSPDLSHIRVFGCAAYAHQVE 872
+ GL K FW E + TA YLINRSPS +++ KTP E+WS + S +RVFGC AYAH
Sbjct: 395 TEGLPKQFWVETVSTACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDN 454
Query: 871 GKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINSRDVKFNEL----DMPCLKTP-DN 707
GKL+PRA KC+ LGYP G+KGY+LW K K++ SR+V F+E D P P ++
Sbjct: 455 GKLEPRAIKCIFLGYPSGMKGYKLWCPKTK--KVVISRNVVFHESVMLHDKPSTNVPVES 512
Query: 706 QVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQID 599
Q K S + E E + + +N +V E D
Sbjct: 513 QEKASVQVEHLISSGHAPEKENVAINQDVPVIEDSD 548
Score = 103 bits (257), Expect(3) = 5e-54
Identities = 48/127 (37%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Frame = -1
Query: 483 LVRGKKRIHVRPNLKYTS-SNLMEFVLVSGEALE-SVEPVSYEEAVNCKNSENWKKAMRE 310
+ + K + + +P +Y +N++ + L E +E + EP +Y EA+ + W AM +
Sbjct: 560 IAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAMHD 619
Query: 309 KIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKARLVVKGFTQKEVVDY 130
++ SL KN TW+LV+ PK +K + CKWI+K K+G+ P+D YKARLV KG++Q +D+
Sbjct: 620 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPSDEAMYKARLVAKGYSQIPGIDF 679
Query: 129 NEIFCKV 109
N++F V
Sbjct: 680 NDVFSPV 686
Score = 33.1 bits (74), Expect(3) = 5e-54
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2
Query: 116 VKYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
VK++ IR +L++V D EL Q + VK AFL+GEL+
Sbjct: 687 VKHSSIRTLLSIVAMHDYELEQ--MDVKTAFLHGELE 721
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 155 bits (393), Expect(2) = 8e-54
Identities = 85/182 (46%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAERMN T+++K CML ++GL K FWAEA+ TA YLINRSPS +++ KTP E+W
Sbjct: 411 PQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVW 470
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
S S +RVF C AYAH GKL+PRA KC+ LGYP GVKGY+LW K K++ +
Sbjct: 471 SSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIN 528
Query: 760 RDVKFNEL----DMPCLKTP-DNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDP 596
R+V F+E D P P ++Q K S + E E + + +N + E D
Sbjct: 529 RNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDS 588
Query: 595 QV 590
+
Sbjct: 589 SI 590
Score = 84.0 bits (206), Expect(2) = 8e-54
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Frame = -1
Query: 483 LVRGKKRIHVRPNLKYTS-SNLMEFVLVSGEALE-SVEPVSYEEAVNCKNSENWKKAMRE 310
+ + + + + +P KY +N++ + L E +E + EP +Y +A+ + W AM +
Sbjct: 599 IAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWITAMHD 658
Query: 309 KIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKA 175
++ SL KN TW+LV+ PK +K + CKWI+K KEG+ P+D RYKA
Sbjct: 659 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 703
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 134 bits (336), Expect(3) = 2e-51
Identities = 79/182 (43%), Positives = 102/182 (56%), Gaps = 5/182 (2%)
Frame = -3
Query: 1120 PQQNGVAERMNWTLMNKVICMLISSGLAKGFWAEALCTAAYLINRSPSSSVNFKTPQELW 941
PQQNGVAER L K FWAEA+ TA YLINRSPS +++ KTP ++W
Sbjct: 605 PQQNGVAER-----------------LPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVW 647
Query: 940 SGKSPDLSHIRVFGCAAYAHQVEGKLDPRATKCVMLGYPEGVKGYRLWVLGVKGIKIINS 761
SG + S +RVFGC AYAH KL+PRA KC+ LGYP GVKGY+LW K K++ S
Sbjct: 648 SGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVIS 705
Query: 760 RDVKFNEL----DMPCLKTP-DNQVKQSGEGEFSTGKKIQTEVKRLDVNLEVREPEQIDP 596
R+V F+E D P P ++Q K S + E E + + +NL+ E D
Sbjct: 706 RNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDS 765
Query: 595 QV 590
+
Sbjct: 766 SI 767
Score = 87.4 bits (215), Expect(3) = 2e-51
Identities = 40/107 (37%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = -1
Query: 489 YQLVRGKKRIHVRPNLKYTS-SNLMEFVLVSGEALE-SVEPVSYEEAVNCKNSENWKKAM 316
+ + + K + +++P +Y +N++ + L E +E +VEP +Y +A+ + W AM
Sbjct: 774 HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 833
Query: 315 REKIHSLGKNDTWKLVERPKNQKVVHCKWIYKLKEGVEPNDPLRYKA 175
+++ SL KN TW+LV+ PK +K + CKWI+K KEG+ P+D RYKA
Sbjct: 834 HDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 880
Score = 31.6 bits (70), Expect(3) = 2e-51
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -2
Query: 113 KYTYIRIILALVTQFD*ELNQ*MLKVKQAFLNGELD 6
K + IR +L++V +D EL Q + VK AFL+GEL+
Sbjct: 879 KASSIRTLLSIVAMYDYELEQ--MDVKTAFLHGELE 912