BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00010260
         (2641 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011087531.1| PREDICTED: putative RNA polymerase II subuni...   851   0.0  
ref|XP_011087529.1| PREDICTED: putative RNA polymerase II subuni...   851   0.0  
ref|XP_011087530.1| PREDICTED: putative RNA polymerase II subuni...   848   0.0  
ref|XP_012859052.1| PREDICTED: putative RNA polymerase II subuni...   787   0.0  
ref|XP_009771014.1| PREDICTED: putative RNA polymerase II subuni...   764   0.0  
ref|XP_004230345.1| PREDICTED: putative RNA polymerase II subuni...   759   0.0  
ref|XP_009602820.1| PREDICTED: putative RNA polymerase II subuni...   751   0.0  
emb|CAN62034.1| hypothetical protein VITISV_014731 [Vitis vinifera]   747   0.0  
ref|XP_009629194.1| PREDICTED: putative RNA polymerase II subuni...   740   0.0  
ref|XP_009629188.1| PREDICTED: putative RNA polymerase II subuni...   740   0.0  
ref|XP_006358558.1| PREDICTED: putative RNA polymerase II subuni...   737   0.0  
ref|XP_002280625.1| PREDICTED: putative RNA polymerase II subuni...   733   0.0  
ref|XP_012072543.1| PREDICTED: putative RNA polymerase II subuni...   702   0.0  
ref|XP_002521936.1| conserved hypothetical protein [Ricinus comm...   667   0.0  
ref|XP_002321396.2| hypothetical protein POPTR_0015s01330g [Popu...   655   0.0  
ref|XP_007016926.1| F2P16.20 protein, putative isoform 1 [Theobr...   639   e-180
ref|XP_012479689.1| PREDICTED: putative RNA polymerase II subuni...   638   e-180
gb|KHG00854.1| hypothetical protein F383_23706 [Gossypium arboreum]   635   e-179
ref|XP_012479683.1| PREDICTED: putative RNA polymerase II subuni...   633   e-178
gb|KHG00855.1| hypothetical protein F383_23706 [Gossypium arboreum]   630   e-177

>ref|XP_011087531.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X3 [Sesamum indicum]
            gi|747080559|ref|XP_011087533.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X3 [Sesamum indicum]
          Length = 655

 Score =  851 bits (2198), Expect = 0.0
 Identities = 450/662 (67%), Positives = 516/662 (77%), Gaps = 43/662 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            M KDEVLTVKDAVHKLQLSLLEGI NE+QL AAGSL+ +SDYQDVVTERTI NMCGYPLC
Sbjct: 1    MKKDEVLTVKDAVHKLQLSLLEGINNENQLSAAGSLICRSDYQDVVTERTIINMCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSERP KG YRISLKEHKVYDL ETY+YCSSSCLINSRAFA SLQEERSS+LN A 
Sbjct: 61   SNSLPSERPRKGRYRISLKEHKVYDLQETYLYCSSSCLINSRAFAASLQEERSSSLNPAT 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F+GLSL+S V+MG NGDLGLSELKI+EK D +AGEVS+EEWIGPSNAI+GYVP
Sbjct: 121  LNEVLKLFDGLSLDSAVDMG-NGDLGLSELKIEEKTDTEAGEVSLEEWIGPSNAIDGYVP 179

Query: 2099 QRDRNLKPQQTKNLKK-------ESKPKHAESNELDFIFNNMNFSSSIITQDEYSISKLP 1941
            + +RNLKP+Q+ NLKK       ES+ KH   +  D + +++NF+S+IITQDEYSISK  
Sbjct: 180  RNERNLKPKQSSNLKKGARQEQVESEYKHDPPDVADILSSDLNFTSTIITQDEYSISKS- 238

Query: 1940 GPKKIVPQMEGEEPKGKVTREDVSRVSPGISQND-------------------------- 1839
                 VP ++ +E KGKV+  DV+     + + D                          
Sbjct: 239  -----VPLVKDKESKGKVSINDVNSQGNQMEKPDAPLPNVQETKSKKSDKHKHVTKTDDK 293

Query: 1838 ---------PSRKAMT-EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQG 1689
                     PS+  +T EE  H  G                    K  RSVTWAD    G
Sbjct: 294  LSILEAAAGPSQNDLTKEENGHRLGKECASGATILKSSLKTSDSKKATRSVTWADAKTDG 353

Query: 1688 DGKNLCEFRELDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKSDVS 1509
            DG+NLCEFRE+ + K A+V S+S + EVG+ESYR +SAEACARALSQAAE VA+G+ DVS
Sbjct: 354  DGQNLCEFREVKDGKGALVTSHSADQEVGDESYRIASAEACARALSQAAEAVATGQHDVS 413

Query: 1508 DAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDST 1329
            DAVSEAGVIILPPP+EVDEA+ EE GDV DTDP +LKWP KPGF N DLFDSEDSWYDS 
Sbjct: 414  DAVSEAGVIILPPPHEVDEAKHEEIGDVTDTDPVLLKWPPKPGFSNADLFDSEDSWYDSP 473

Query: 1328 PEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRS 1149
            PEGFSLTLSPFSTMFMALFAWI+SSS+AYIYG++ES+HEEY+S+NGREYP K+VM DGRS
Sbjct: 474  PEGFSLTLSPFSTMFMALFAWITSSSLAYIYGKEESFHEEYISVNGREYPHKVVMPDGRS 533

Query: 1148 SEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIV 969
            SEIKQTL+GCLAR+LPGLVAELRLP P+ST+EQG+ RLLDTMSF+DPLP+FRMKQWQVIV
Sbjct: 534  SEIKQTLAGCLARALPGLVAELRLPIPMSTIEQGMGRLLDTMSFIDPLPAFRMKQWQVIV 593

Query: 968  LLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQS 789
            LL LDALSVSRIPALT Y+ GRR+LL KVLEGAQISAEE+EIMKDLIIPLGRVPQFSTQS
Sbjct: 594  LLFLDALSVSRIPALTPYLMGRRILLPKVLEGAQISAEEFEIMKDLIIPLGRVPQFSTQS 653

Query: 788  GG 783
            GG
Sbjct: 654  GG 655


>ref|XP_011087529.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Sesamum indicum]
          Length = 699

 Score =  851 bits (2198), Expect = 0.0
 Identities = 450/662 (67%), Positives = 516/662 (77%), Gaps = 43/662 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            M KDEVLTVKDAVHKLQLSLLEGI NE+QL AAGSL+ +SDYQDVVTERTI NMCGYPLC
Sbjct: 45   MKKDEVLTVKDAVHKLQLSLLEGINNENQLSAAGSLICRSDYQDVVTERTIINMCGYPLC 104

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSERP KG YRISLKEHKVYDL ETY+YCSSSCLINSRAFA SLQEERSS+LN A 
Sbjct: 105  SNSLPSERPRKGRYRISLKEHKVYDLQETYLYCSSSCLINSRAFAASLQEERSSSLNPAT 164

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F+GLSL+S V+MG NGDLGLSELKI+EK D +AGEVS+EEWIGPSNAI+GYVP
Sbjct: 165  LNEVLKLFDGLSLDSAVDMG-NGDLGLSELKIEEKTDTEAGEVSLEEWIGPSNAIDGYVP 223

Query: 2099 QRDRNLKPQQTKNLKK-------ESKPKHAESNELDFIFNNMNFSSSIITQDEYSISKLP 1941
            + +RNLKP+Q+ NLKK       ES+ KH   +  D + +++NF+S+IITQDEYSISK  
Sbjct: 224  RNERNLKPKQSSNLKKGARQEQVESEYKHDPPDVADILSSDLNFTSTIITQDEYSISKS- 282

Query: 1940 GPKKIVPQMEGEEPKGKVTREDVSRVSPGISQND-------------------------- 1839
                 VP ++ +E KGKV+  DV+     + + D                          
Sbjct: 283  -----VPLVKDKESKGKVSINDVNSQGNQMEKPDAPLPNVQETKSKKSDKHKHVTKTDDK 337

Query: 1838 ---------PSRKAMT-EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQG 1689
                     PS+  +T EE  H  G                    K  RSVTWAD    G
Sbjct: 338  LSILEAAAGPSQNDLTKEENGHRLGKECASGATILKSSLKTSDSKKATRSVTWADAKTDG 397

Query: 1688 DGKNLCEFRELDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKSDVS 1509
            DG+NLCEFRE+ + K A+V S+S + EVG+ESYR +SAEACARALSQAAE VA+G+ DVS
Sbjct: 398  DGQNLCEFREVKDGKGALVTSHSADQEVGDESYRIASAEACARALSQAAEAVATGQHDVS 457

Query: 1508 DAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDST 1329
            DAVSEAGVIILPPP+EVDEA+ EE GDV DTDP +LKWP KPGF N DLFDSEDSWYDS 
Sbjct: 458  DAVSEAGVIILPPPHEVDEAKHEEIGDVTDTDPVLLKWPPKPGFSNADLFDSEDSWYDSP 517

Query: 1328 PEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRS 1149
            PEGFSLTLSPFSTMFMALFAWI+SSS+AYIYG++ES+HEEY+S+NGREYP K+VM DGRS
Sbjct: 518  PEGFSLTLSPFSTMFMALFAWITSSSLAYIYGKEESFHEEYISVNGREYPHKVVMPDGRS 577

Query: 1148 SEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIV 969
            SEIKQTL+GCLAR+LPGLVAELRLP P+ST+EQG+ RLLDTMSF+DPLP+FRMKQWQVIV
Sbjct: 578  SEIKQTLAGCLARALPGLVAELRLPIPMSTIEQGMGRLLDTMSFIDPLPAFRMKQWQVIV 637

Query: 968  LLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQS 789
            LL LDALSVSRIPALT Y+ GRR+LL KVLEGAQISAEE+EIMKDLIIPLGRVPQFSTQS
Sbjct: 638  LLFLDALSVSRIPALTPYLMGRRILLPKVLEGAQISAEEFEIMKDLIIPLGRVPQFSTQS 697

Query: 788  GG 783
            GG
Sbjct: 698  GG 699


>ref|XP_011087530.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Sesamum indicum]
          Length = 687

 Score =  848 bits (2191), Expect = 0.0
 Identities = 447/655 (68%), Positives = 513/655 (78%), Gaps = 36/655 (5%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            M KDEVLTVKDAVHKLQLSLLEGI NE+QL AAGSL+ +SDYQDVVTERTI NMCGYPLC
Sbjct: 45   MKKDEVLTVKDAVHKLQLSLLEGINNENQLSAAGSLICRSDYQDVVTERTIINMCGYPLC 104

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSERP KG YRISLKEHKVYDL ETY+YCSSSCLINSRAFA SLQEERSS+LN A 
Sbjct: 105  SNSLPSERPRKGRYRISLKEHKVYDLQETYLYCSSSCLINSRAFAASLQEERSSSLNPAT 164

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F+GLSL+S V+MG NGDLGLSELKI+EK D +AGEVS+EEWIGPSNAI+GYVP
Sbjct: 165  LNEVLKLFDGLSLDSAVDMG-NGDLGLSELKIEEKTDTEAGEVSLEEWIGPSNAIDGYVP 223

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAESNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIVP 1920
            + +RNLKP+Q+ NLKK      A   ++D + +++NF+S+IITQDEYSISK       VP
Sbjct: 224  RNERNLKPKQSSNLKKG-----ARQEQVDILSSDLNFTSTIITQDEYSISKS------VP 272

Query: 1919 QMEGEEPKGKVTREDVSRVSPGISQND--------------------------------- 1839
             ++ +E KGKV+  DV+     + + D                                 
Sbjct: 273  LVKDKESKGKVSINDVNSQGNQMEKPDAPLPNVQETKSKKSDKHKHVTKTDDKLSILEAA 332

Query: 1838 --PSRKAMT-EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQGDGKNLCE 1668
              PS+  +T EE  H  G                    K  RSVTWAD    GDG+NLCE
Sbjct: 333  AGPSQNDLTKEENGHRLGKECASGATILKSSLKTSDSKKATRSVTWADAKTDGDGQNLCE 392

Query: 1667 FRELDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKSDVSDAVSEAG 1488
            FRE+ + K A+V S+S + EVG+ESYR +SAEACARALSQAAE VA+G+ DVSDAVSEAG
Sbjct: 393  FREVKDGKGALVTSHSADQEVGDESYRIASAEACARALSQAAEAVATGQHDVSDAVSEAG 452

Query: 1487 VIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLT 1308
            VIILPPP+EVDEA+ EE GDV DTDP +LKWP KPGF N DLFDSEDSWYDS PEGFSLT
Sbjct: 453  VIILPPPHEVDEAKHEEIGDVTDTDPVLLKWPPKPGFSNADLFDSEDSWYDSPPEGFSLT 512

Query: 1307 LSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTL 1128
            LSPFSTMFMALFAWI+SSS+AYIYG++ES+HEEY+S+NGREYP K+VM DGRSSEIKQTL
Sbjct: 513  LSPFSTMFMALFAWITSSSLAYIYGKEESFHEEYISVNGREYPHKVVMPDGRSSEIKQTL 572

Query: 1127 SGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDAL 948
            +GCLAR+LPGLVAELRLP P+ST+EQG+ RLLDTMSF+DPLP+FRMKQWQVIVLL LDAL
Sbjct: 573  AGCLARALPGLVAELRLPIPMSTIEQGMGRLLDTMSFIDPLPAFRMKQWQVIVLLFLDAL 632

Query: 947  SVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQSGG 783
            SVSRIPALT Y+ GRR+LL KVLEGAQISAEE+EIMKDLIIPLGRVPQFSTQSGG
Sbjct: 633  SVSRIPALTPYLMGRRILLPKVLEGAQISAEEFEIMKDLIIPLGRVPQFSTQSGG 687


>ref|XP_012859052.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Erythranthe guttatus]
            gi|604299511|gb|EYU19406.1| hypothetical protein
            MIMGU_mgv1a003240mg [Erythranthe guttata]
          Length = 597

 Score =  787 bits (2032), Expect = 0.0
 Identities = 406/621 (65%), Positives = 496/621 (79%), Gaps = 2/621 (0%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            M   ++L VKDAVHKLQLSLLEGIK+ESQL AAGSL+SQSDYQDVVTERTIA++CGYPLC
Sbjct: 1    MKDGKILGVKDAVHKLQLSLLEGIKHESQLIAAGSLISQSDYQDVVTERTIAHVCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
            ++SLPSE P KGHYRISLKEHKVYDLHET+MYCS+ CLI SRAF  SL+EERSS+L+ AK
Sbjct: 61   VNSLPSEPPRKGHYRISLKEHKVYDLHETHMYCSTECLIRSRAFGASLEEERSSSLDPAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            +N VL MF+GLSL+S + + K+GDLGLS LKI+EK    +GE+S+EEW+GPSNAI+GYVP
Sbjct: 121  INSVLKMFDGLSLDSVMGLDKSGDLGLSGLKIREKMVTGSGEMSLEEWVGPSNAIDGYVP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAESNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIVP 1920
            +RD+N + +Q    K ES   HA+ N  D +  ++NF+S+II QDEYS+SK   P++   
Sbjct: 181  RRDQNSERKQPSRKKTESN--HAKPNLADTLPFDVNFTSTIIMQDEYSVSKTAVPREAKG 238

Query: 1919 QMEGEEPKGKVTREDVSRV--SPGISQNDPSRKAMTEETDHNHGXXXXXXXXXXXXXXXX 1746
            +++G+  +  V  E +S +  + G SQND +    + +T                     
Sbjct: 239  KVKGKMIRKSVKAEKISVLDDTAGPSQNDTTLLKSSLKT--------------------- 277

Query: 1745 XXXXKEIRSVTWADENAQGDGKNLCEFRELDNKKEAVVDSNSRNTEVGEESYRFSSAEAC 1566
                KE RSVTWADE + GDGK++ E RE+ + K AVV  +  + +VG+ESYRF+SAEAC
Sbjct: 278  LDSKKETRSVTWADEKSDGDGKSISECREIGDNKGAVVMPHLTDEDVGDESYRFTSAEAC 337

Query: 1565 ARALSQAAEVVASGKSDVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSK 1386
            ARALSQA+E VASGK+D SDAVSEAGVIILPPP+EVDEA+ E+ G+V+D DP  LKWP K
Sbjct: 338  ARALSQASEAVASGKTDASDAVSEAGVIILPPPHEVDEAKYEQIGEVVDVDPIELKWPPK 397

Query: 1385 PGFPNYDLFDSEDSWYDSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEY 1206
            PGF + DLFDSEDSWYDS PEGF+LTLSPFSTMFM+LFAWISSSS+AYIYG++E +HE+Y
Sbjct: 398  PGFSSEDLFDSEDSWYDSPPEGFNLTLSPFSTMFMSLFAWISSSSLAYIYGKEERFHEDY 457

Query: 1205 LSINGREYPRKIVMEDGRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDT 1026
            LSINGREYP KI++ DGRS+E+K TL+GCLAR+LPGLV+E+R+PTP+ST+EQG+ RLLDT
Sbjct: 458  LSINGREYPPKIII-DGRSAEVKHTLAGCLARALPGLVSEIRIPTPVSTIEQGMGRLLDT 516

Query: 1025 MSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYE 846
            MSF D LP FRMKQWQVI LL LDALSVSRIPAL+ YMTGRR+LL KVLEGAQI+ EE+E
Sbjct: 517  MSFTDALPGFRMKQWQVIALLFLDALSVSRIPALSPYMTGRRILLPKVLEGAQINVEEFE 576

Query: 845  IMKDLIIPLGRVPQFSTQSGG 783
            IMKDLIIPLGRVPQFSTQSGG
Sbjct: 577  IMKDLIIPLGRVPQFSTQSGG 597


>ref|XP_009771014.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Nicotiana sylvestris]
            gi|698557405|ref|XP_009771015.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana sylvestris]
          Length = 664

 Score =  764 bits (1973), Expect = 0.0
 Identities = 410/665 (61%), Positives = 484/665 (72%), Gaps = 46/665 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MA +EV+ VKDA+HKLQL LLEGIK+E+QLFAAGSL+S+ DYQDVVTER+IANMCGYPLC
Sbjct: 1    MANEEVIAVKDAIHKLQLYLLEGIKDENQLFAAGSLLSRRDYQDVVTERSIANMCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSERP  GHYRISLKEHKVYDLHETYMYCS++C +NS AFA SLQ+ERSSTLN+AK
Sbjct: 61   SNSLPSERPRNGHYRISLKEHKVYDLHETYMYCSTNCAVNSGAFARSLQDERSSTLNTAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F GL L+S  ++ ++GDLGLS+LKIQEK D+K GEVS+EEW+GPS+AIEGYVP
Sbjct: 121  LNEVLKLFVGLHLHSTEDVKESGDLGLSKLKIQEKVDVKGGEVSMEEWMGPSDAIEGYVP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAE-SNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIV 1923
            QR+RNLKP    N+KK SK K A+  NE + I + M+FSS+IITQD YSISKLP P   V
Sbjct: 181  QRERNLKPALLNNIKKSSKNKQAKLQNEKNMILHEMDFSSTIITQDGYSISKLPAPVNAV 240

Query: 1922 PQME-------------------------------GEEPKG--------KVTREDVSRVS 1860
               +                               GEE +         KV + +   VS
Sbjct: 241  SSKKVKEAQTRTSYEVRDVDVSILGKQVDALQLHSGEETEKTDSNNRSYKVDKFNTGEVS 300

Query: 1859 PGISQNDPSRKAMT----EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQ 1692
             G  Q+D   K++      +    +                     K  RSVTWADEN  
Sbjct: 301  SGPCQHDVKNKSLEVLNMSDAGREYASDDAREKQSLRSSLKSSKYKKMARSVTWADENVD 360

Query: 1691 -GDGKNLCEFRELDNK-KEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKS 1518
             G GK      E+  K  +A  +S   N E  ++SYRF SAEACA AL QAAE VASG S
Sbjct: 361  NGTGKLTESSSEISEKGDQANRESGPTNMEEDDDSYRFESAEACAAALKQAAEAVASG-S 419

Query: 1517 DVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWY 1338
            DV DAVS AG+IILPPP EVDEA  +EN +V+D +P+ LKWP KPG PNYD+F+SEDSWY
Sbjct: 420  DVPDAVSTAGIIILPPPKEVDEAVLKENDEVLDIEPAPLKWPRKPGVPNYDVFESEDSWY 479

Query: 1337 DSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMED 1158
            DS PEGF+L LSPFSTMF +LF WISSSS+++IYG DES++EEYLS+NG EYPRKIV+ D
Sbjct: 480  DSPPEGFNLNLSPFSTMFNSLFTWISSSSLSFIYGNDESFNEEYLSVNGSEYPRKIVLSD 539

Query: 1157 GRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQ 978
            GRS+EIKQTL+ CLAR+LPGLVA+LRLP PIS LEQG+  L+DTMSFVDPLP+FRMKQWQ
Sbjct: 540  GRSTEIKQTLARCLARALPGLVADLRLPVPISVLEQGLVLLIDTMSFVDPLPAFRMKQWQ 599

Query: 977  VIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFS 798
            +IVLL LDALS+ RIP LT YMTGRR LL KVL+GAQISA EYEI+KDLIIPLGRVPQFS
Sbjct: 600  LIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAQISAAEYEILKDLIIPLGRVPQFS 659

Query: 797  TQSGG 783
             QSGG
Sbjct: 660  MQSGG 664


>ref|XP_004230345.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Solanum lycopersicum]
          Length = 660

 Score =  759 bits (1960), Expect = 0.0
 Identities = 408/661 (61%), Positives = 483/661 (73%), Gaps = 42/661 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAK E + VKDAVHKLQL LLEGIK+ESQL AAGSL+S+SDYQDVVTER+IANMCGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLEGIKDESQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSER  KGHYRISLKEHKVYDLHETYMYCS++C++NS AFAGSLQ+ERSSTLN AK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LN+VLN+F+GL L+S  ++ +NGD G S+LKIQEK D+K GEVS+EEW+GPSNAIEGYVP
Sbjct: 121  LNQVLNLFKGLHLHSLDDVKENGDRGSSKLKIQEKVDLKGGEVSLEEWMGPSNAIEGYVP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAE-SNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIV 1923
            QRDR++ P   KN+ K SK KHA   +E + I N  +FSS+IITQDEYS+SK P P    
Sbjct: 181  QRDRSVNPALLKNINKGSKNKHARLQDEKNMILNEFDFSSTIITQDEYSVSKFPAPVNAD 240

Query: 1922 PQMEGEEPKG----KVTREDV-----------------------------------SRVS 1860
              ++ +E +     KV  +DV                                     VS
Sbjct: 241  SNVKFKETQAKTRYKVRDDDVYILGKQVDALQLRSGEETEKSDKNTRFLKVDKFNSGEVS 300

Query: 1859 PGISQNDPSRKAMTEETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQGD-G 1683
             G SQ+D   K++   +D                        K  RSVTWADE+  G  G
Sbjct: 301  SGPSQHDVKNKSVLIMSDDGRKYASHGEHDKLKSSLKSSNSKKMSRSVTWADESIDGGIG 360

Query: 1682 KNLCEFREL-DNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKSDVSD 1506
            K      ++ + + +A   S S + E  ++SYRF SAEACA ALSQAAE VASG SDV D
Sbjct: 361  KKTESSSKISEYESQAYGGSASTDMEENDDSYRFESAEACAAALSQAAEAVASG-SDVPD 419

Query: 1505 AVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDSTP 1326
            AVS+AG++ILPP  EVDEA  +E  +++D + + LKWP KPG PNYD+F+SEDSWYDS P
Sbjct: 420  AVSKAGIVILPPSQEVDEAILQETDEMLDLETAPLKWPRKPGMPNYDVFESEDSWYDSPP 479

Query: 1325 EGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSS 1146
            EGF++TLSPF TMF +LF WISSSS+A+IYG DES +EEYLSINGREYPRKIV+ DGRS+
Sbjct: 480  EGFNMTLSPFGTMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGREYPRKIVLSDGRST 539

Query: 1145 EIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVL 966
            EIKQTL+GCLAR+LPGLVA+LRLP PISTLEQG+  LL+TMSFVDPLP+FRMKQWQ+IVL
Sbjct: 540  EIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVL 599

Query: 965  LLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQSG 786
            L LDALSV RIP LT YMTGRR    KVL+GAQISA EYEIMKDLIIPLGRVPQFS QSG
Sbjct: 600  LFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLIIPLGRVPQFSMQSG 659

Query: 785  G 783
            G
Sbjct: 660  G 660


>ref|XP_009602820.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Nicotiana tomentosiformis]
            gi|697187566|ref|XP_009602821.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
          Length = 664

 Score =  751 bits (1940), Expect = 0.0
 Identities = 401/665 (60%), Positives = 478/665 (71%), Gaps = 46/665 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MA +EV+ VKDA+HKLQL LLEGIK+E+QLFAAGSL+S+ DYQDVVTERTIANMCGYPLC
Sbjct: 1    MANEEVIAVKDAIHKLQLCLLEGIKDENQLFAAGSLLSRRDYQDVVTERTIANMCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             + LPSERP KGHYRISLKEHKVYDLHE YMYCS++C++NS AFA SLQ+ERS TLN+AK
Sbjct: 61   SNCLPSERPKKGHYRISLKEHKVYDLHEAYMYCSTNCVVNSGAFARSLQDERSDTLNTAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F GL L+S  ++  NG+LGLS+LKIQEK D+K GEVS++EW+GPS+AIEGY P
Sbjct: 121  LNEVLKLFVGLHLHSTEDVKDNGELGLSKLKIQEKLDVKGGEVSMDEWMGPSDAIEGYFP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAE-SNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIV 1923
            QRD+++KP    N+KK  K K  +  N+ + I N M+FSS+IITQD YSISKLP P  +V
Sbjct: 181  QRDQSVKPALLNNIKKGFKNKQTKLQNKKNMILNEMDFSSTIITQDGYSISKLPAPINVV 240

Query: 1922 PQMEGEEPKGKVTRE----DVS-----------------------------------RVS 1860
               +  E + K + E    DVS                                    VS
Sbjct: 241  SSKKVNEAQTKTSYEVGDADVSILGKQVDVLQLYSGEETEKTDSNDRSYKVDKFNNREVS 300

Query: 1859 PGISQNDPSRKAMT----EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQ 1692
             G  Q+D   K++      +    +                     K  RSVTWADEN  
Sbjct: 301  SGPCQHDVRNKSLEVLNMSDAGREYASDGAREKQSLRSSLKSSNYKKMARSVTWADENID 360

Query: 1691 -GDGKNL-CEFRELDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKS 1518
             G GK + C     +   +A   S   + E  ++SYRF SAEACA AL QAAE VASG S
Sbjct: 361  NGTGKKMECSAEISEEANQAYRGSGPTDMEEDDDSYRFKSAEACAAALKQAAEAVASG-S 419

Query: 1517 DVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWY 1338
            DV DAVS AG+IILPPP EVDEA  +EN +V+DT+P+ LKWP KPG PNYD+F+SEDSWY
Sbjct: 420  DVPDAVSHAGIIILPPPQEVDEAILQENDEVLDTEPAPLKWPRKPGVPNYDVFESEDSWY 479

Query: 1337 DSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMED 1158
            DS PEGF+L LSPF+TMF +LF WISSSS+++IYG DES +EEYLSINGREYPRKIV+ D
Sbjct: 480  DSPPEGFNLNLSPFATMFNSLFTWISSSSLSFIYGNDESSNEEYLSINGREYPRKIVLSD 539

Query: 1157 GRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQ 978
            GRS+EIKQTL+ CLAR+LPGLV +LRLP PIS LEQG+  L+DTMSFVDPLP+FR+KQWQ
Sbjct: 540  GRSTEIKQTLARCLARALPGLVTDLRLPVPISVLEQGVVLLIDTMSFVDPLPAFRIKQWQ 599

Query: 977  VIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFS 798
            +IVLL LDALS+ RIP LT YMTGRR LL KVL+GA ISA EYEIMKDL+IPLGRVPQFS
Sbjct: 600  LIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAHISAAEYEIMKDLVIPLGRVPQFS 659

Query: 797  TQSGG 783
             QSGG
Sbjct: 660  MQSGG 664


>emb|CAN62034.1| hypothetical protein VITISV_014731 [Vitis vinifera]
          Length = 659

 Score =  747 bits (1928), Expect = 0.0
 Identities = 399/662 (60%), Positives = 489/662 (73%), Gaps = 43/662 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MA D+ + VKDAVHKLQL LLEGI+NE+QLFAAGSLMS+SDY+DVVTERTIAN+CGYPLC
Sbjct: 1    MAGDQPIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSER  KGHYRISLKEHKVYDLHETYMYCSS C++NSR+FAGSLQEER S LNS +
Sbjct: 61   SNSLPSERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFAGSLQEERCSVLNSER 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            +N +L +F   SL S   +GK+GDLGLSELKI+E  + KAGEVS+E+WIGPSNAIEGYVP
Sbjct: 121  INGILRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAESNE-LDFIFNNMNFSSSIITQDEYSISKLP-GPKKI 1926
            QRDRNLKP+  KN K+ SK  +++ +   +F+ + M+F S+IIT+DEYSISK   G K  
Sbjct: 181  QRDRNLKPKNIKNHKEGSKSSNSKMDSGKNFVIDEMDFVSTIITKDEYSISKSSKGLKDT 240

Query: 1925 VPQMEGEEPKGKVT-----------------------REDVSRVSPGI------------ 1851
                + +EPK K +                       RE   R S  I            
Sbjct: 241  TSHAKSKEPKEKASIGDQLSMLEKSAPPIQNDSESKLRESKGRRSRVIFKDEFSTAEVPS 300

Query: 1850 --SQNDPSRKAMTEETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQG-DGK 1680
              SQ+      +  + +++                      K IRSVTWADE     D +
Sbjct: 301  VPSQSGSELNGVKGKEEYHTENAAQLGPTKPKSSLKPSGGKKVIRSVTWADEKMDSADSR 360

Query: 1679 NLCEFRELDNKKEAVVDSNSR-NTEVGEE--SYRFSSAEACARALSQAAEVVASGKSDVS 1509
            + C+ REL+ KKE   D N   + +VG++  + RF+SAEACA ALSQAAE VASG++D++
Sbjct: 361  DFCKVRELEVKKE---DPNGLGDIDVGDDDNALRFASAEACAVALSQAAEAVASGETDMT 417

Query: 1508 DAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDST 1329
            DAVSEAG+IILP P ++DE E+ ++ D+++ +P  LKWP KPG  + D+FDS+DSWYD+ 
Sbjct: 418  DAVSEAGIIILPHPRDMDEGESLKDADLLEPEPVPLKWPIKPGISHSDIFDSDDSWYDTP 477

Query: 1328 PEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRS 1149
            PEGFSLTLSPF+TM+MALFAWI+SSS+AYIYGRDES+HEEYLS+NGREYP+KIV+ DGRS
Sbjct: 478  PEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTDGRS 537

Query: 1148 SEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIV 969
            SEIKQTL+GCL+R+LPGLVA+LRLP P+S LEQG+ RLLDTMSFVD LPSFRMKQWQVIV
Sbjct: 538  SEIKQTLAGCLSRALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQVIV 597

Query: 968  LLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQS 789
            LL +DALSV RIPALT +MT RR+L  KV + AQ+SAEEYE+MKDLIIPLGRVPQFS QS
Sbjct: 598  LLFIDALSVCRIPALTPHMTSRRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFSAQS 657

Query: 788  GG 783
            GG
Sbjct: 658  GG 659


>ref|XP_009629194.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Nicotiana tomentosiformis]
            gi|697149972|ref|XP_009629195.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X2 [Nicotiana tomentosiformis]
            gi|697149974|ref|XP_009629196.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X2 [Nicotiana tomentosiformis]
            gi|697149976|ref|XP_009629197.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X2 [Nicotiana tomentosiformis]
          Length = 664

 Score =  740 bits (1911), Expect = 0.0
 Identities = 399/665 (60%), Positives = 475/665 (71%), Gaps = 46/665 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MA +EV+ VKDA+HKLQL LLEGIK+E+QLFAAGSL+S+ DYQDVVTER+I NMCGYPLC
Sbjct: 1    MANEEVIAVKDAIHKLQLCLLEGIKDENQLFAAGSLLSRRDYQDVVTERSIVNMCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSERP KGHYRISLKEHKVYDLHETY YCS++C++NS AFA SLQ+ERS+TLN+AK
Sbjct: 61   SNSLPSERPSKGHYRISLKEHKVYDLHETYTYCSTNCVVNSGAFARSLQDERSTTLNTAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F GL L+S  ++ +NGDLGLS+LKIQEK D+K GEVS+EEW+GPS+AIEGYVP
Sbjct: 121  LNEVLKLFVGLHLHSIEDVKENGDLGLSKLKIQEKLDVKGGEVSMEEWMGPSDAIEGYVP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAE-SNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIV 1923
            QRDR++KP    N+KK  K K  +  NE + I N M+FSS+IITQD YS SKLP    +V
Sbjct: 181  QRDRSVKPALLNNIKKGFKNKQTKLQNEKNMILNEMDFSSTIITQDGYSSSKLPVSVNVV 240

Query: 1922 PQMEGEEPKGKVTRE---------------------------------------DVSRVS 1860
               + +E + K + E                                       D   VS
Sbjct: 241  SSKKVKEAQTKTSYEGRDADVSILGKQVDALQLHSGEETEKTDSNDRSYKVDKFDNGEVS 300

Query: 1859 PGISQNDPSRKAMT----EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQ 1692
             G  Q+D    ++      +    H                     K  RSVTWADEN  
Sbjct: 301  SGPCQHDVKNISLEVLDMSDAGREHASDGAREKQSLRSSLKSSNYTKMTRSVTWADENID 360

Query: 1691 -GDGKNL-CEFRELDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKS 1518
             G  K + C     +   +A   S   + E  ++SYRF SAEACA AL QAA+ VASG S
Sbjct: 361  NGTVKKMECSSEISEEADQAYRGSGPTDMEEVDDSYRFESAEACAAALKQAAKAVASG-S 419

Query: 1517 DVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWY 1338
            DV DAVS AG+IILPPP EVD+A  +EN +V+DT P+ LKWP K G PNYD+F+SEDSWY
Sbjct: 420  DVPDAVSNAGIIILPPPQEVDKAILQENDEVLDTKPAPLKWPRKQGVPNYDVFESEDSWY 479

Query: 1337 DSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMED 1158
            DS PEGF+L LSPF+TMF +LF WISSSS+++IYG DES +EEYLSINGREYPRKIV+ D
Sbjct: 480  DSPPEGFNLNLSPFATMFNSLFTWISSSSLSFIYGNDESSNEEYLSINGREYPRKIVLSD 539

Query: 1157 GRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQ 978
            GRS+EIKQTL+ CLAR+LP LVA+LRLP PIS LEQG+  L+DTMSFVDPLP+FR+KQWQ
Sbjct: 540  GRSTEIKQTLARCLARALPELVADLRLPVPISVLEQGVVLLIDTMSFVDPLPAFRIKQWQ 599

Query: 977  VIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFS 798
            +IVLL LDALS+ RIP LT YMTGRR LL KVL+GAQISA EYEIMKDLIIPLGRVPQFS
Sbjct: 600  LIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAQISAVEYEIMKDLIIPLGRVPQFS 659

Query: 797  TQSGG 783
             QSGG
Sbjct: 660  MQSGG 664


>ref|XP_009629188.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Nicotiana tomentosiformis]
            gi|697149962|ref|XP_009629189.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
            gi|697149964|ref|XP_009629190.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
            gi|697149966|ref|XP_009629192.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
            gi|697149968|ref|XP_009629193.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Nicotiana tomentosiformis]
          Length = 680

 Score =  740 bits (1911), Expect = 0.0
 Identities = 399/665 (60%), Positives = 475/665 (71%), Gaps = 46/665 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MA +EV+ VKDA+HKLQL LLEGIK+E+QLFAAGSL+S+ DYQDVVTER+I NMCGYPLC
Sbjct: 17   MANEEVIAVKDAIHKLQLCLLEGIKDENQLFAAGSLLSRRDYQDVVTERSIVNMCGYPLC 76

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSERP KGHYRISLKEHKVYDLHETY YCS++C++NS AFA SLQ+ERS+TLN+AK
Sbjct: 77   SNSLPSERPSKGHYRISLKEHKVYDLHETYTYCSTNCVVNSGAFARSLQDERSTTLNTAK 136

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F GL L+S  ++ +NGDLGLS+LKIQEK D+K GEVS+EEW+GPS+AIEGYVP
Sbjct: 137  LNEVLKLFVGLHLHSIEDVKENGDLGLSKLKIQEKLDVKGGEVSMEEWMGPSDAIEGYVP 196

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAE-SNELDFIFNNMNFSSSIITQDEYSISKLPGPKKIV 1923
            QRDR++KP    N+KK  K K  +  NE + I N M+FSS+IITQD YS SKLP    +V
Sbjct: 197  QRDRSVKPALLNNIKKGFKNKQTKLQNEKNMILNEMDFSSTIITQDGYSSSKLPVSVNVV 256

Query: 1922 PQMEGEEPKGKVTRE---------------------------------------DVSRVS 1860
               + +E + K + E                                       D   VS
Sbjct: 257  SSKKVKEAQTKTSYEGRDADVSILGKQVDALQLHSGEETEKTDSNDRSYKVDKFDNGEVS 316

Query: 1859 PGISQNDPSRKAMT----EETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQ 1692
             G  Q+D    ++      +    H                     K  RSVTWADEN  
Sbjct: 317  SGPCQHDVKNISLEVLDMSDAGREHASDGAREKQSLRSSLKSSNYTKMTRSVTWADENID 376

Query: 1691 -GDGKNL-CEFRELDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKS 1518
             G  K + C     +   +A   S   + E  ++SYRF SAEACA AL QAA+ VASG S
Sbjct: 377  NGTVKKMECSSEISEEADQAYRGSGPTDMEEVDDSYRFESAEACAAALKQAAKAVASG-S 435

Query: 1517 DVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWY 1338
            DV DAVS AG+IILPPP EVD+A  +EN +V+DT P+ LKWP K G PNYD+F+SEDSWY
Sbjct: 436  DVPDAVSNAGIIILPPPQEVDKAILQENDEVLDTKPAPLKWPRKQGVPNYDVFESEDSWY 495

Query: 1337 DSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMED 1158
            DS PEGF+L LSPF+TMF +LF WISSSS+++IYG DES +EEYLSINGREYPRKIV+ D
Sbjct: 496  DSPPEGFNLNLSPFATMFNSLFTWISSSSLSFIYGNDESSNEEYLSINGREYPRKIVLSD 555

Query: 1157 GRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQ 978
            GRS+EIKQTL+ CLAR+LP LVA+LRLP PIS LEQG+  L+DTMSFVDPLP+FR+KQWQ
Sbjct: 556  GRSTEIKQTLARCLARALPELVADLRLPVPISVLEQGVVLLIDTMSFVDPLPAFRIKQWQ 615

Query: 977  VIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFS 798
            +IVLL LDALS+ RIP LT YMTGRR LL KVL+GAQISA EYEIMKDLIIPLGRVPQFS
Sbjct: 616  LIVLLFLDALSICRIPVLTPYMTGRRTLLPKVLDGAQISAVEYEIMKDLIIPLGRVPQFS 675

Query: 797  TQSGG 783
             QSGG
Sbjct: 676  MQSGG 680


>ref|XP_006358558.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Solanum tuberosum]
          Length = 662

 Score =  737 bits (1903), Expect = 0.0
 Identities = 404/667 (60%), Positives = 481/667 (72%), Gaps = 48/667 (7%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAK E + VKDAVHKLQL LLEGIK+E+QL AAGSL+S+SDYQDVVTER+IANMCGYPLC
Sbjct: 1    MAKGEAVAVKDAVHKLQLCLLEGIKDENQLIAAGSLLSRSDYQDVVTERSIANMCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSER  KGHYRISLKEHKVYDLHETYMYCS++C++NS AFAGSLQ+ERSSTLN AK
Sbjct: 61   SNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAG-EVSVEEWIGPSNAIEGYV 2103
            LN+VLN+F+GL L+S  ++ +NGDLG S+LKIQEK D+K G EVS+EEW+GPSNAIEGYV
Sbjct: 121  LNQVLNLFKGLHLHSPEDVKENGDLGSSKLKIQEKVDVKGGGEVSLEEWMGPSNAIEGYV 180

Query: 2102 PQRDRNLKPQQTKNLKKESKPKHAE-SNELDFIFNNMNFSSSIITQDEYSISKLPGPKKI 1926
            PQRDR++ P   KN+ K  K KHA   +E + I N  +FSS+IITQDEYS+SK P P   
Sbjct: 181  PQRDRSVNPALLKNINKGFKNKHARLQDEKNMILNEFDFSSTIITQDEYSVSKFPAPVNA 240

Query: 1925 VPQMEGEEPKGK----VTREDVS-----------------------------------RV 1863
            V   + +E + K    V  +DVS                                    V
Sbjct: 241  VSSEKFKEAQAKTRYKVRDDDVSILGKRVDALQLRSGEETEKSDKNTRFLKVDKFNSGEV 300

Query: 1862 SPGISQNDPSRKAMTEETDH-----NHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADEN 1698
            S G SQ+D   K++   +D      +HG                       +SVTWADE 
Sbjct: 301  SSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKQLLKSSLKSSNSKKMS---QSVTWADEI 357

Query: 1697 AQGD-GKNLCEFRELDN-KKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASG 1524
              G  GK      ++   + +A   S S + E  ++SYRF SAEACA ALSQAAE VASG
Sbjct: 358  IDGGIGKKTESSSKISEYENQAYGGSASTDMEEDDDSYRFESAEACAAALSQAAEAVASG 417

Query: 1523 KSDVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDS 1344
             SDV DAVS+AG++ILP   EVDEA  +E  +++D +P+ LKWP KPG PNYD+F+SED 
Sbjct: 418  -SDVPDAVSKAGIVILPTSQEVDEAILQET-EMLDIEPAPLKWPRKPGMPNYDVFESEDC 475

Query: 1343 WYDSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVM 1164
            WYD  PEGF++TLSPF+TMF +LF WISSSS+A+IYG DE+ +EEYLSINGREYP KIV+
Sbjct: 476  WYDGPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDENNNEEYLSINGREYPHKIVL 535

Query: 1163 EDGRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQ 984
             DG S+EIKQTL+GCLAR+LPGLVA+LRLP PISTLEQG+  LL+TMSFVDPLP+FRMKQ
Sbjct: 536  SDGLSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQ 595

Query: 983  WQVIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQ 804
            WQ+IVLL LDALSV RIP LT YMTGRR  L KVL+GAQIS  EYEIMKDLIIPLGRVPQ
Sbjct: 596  WQLIVLLFLDALSVCRIPTLTPYMTGRRTSLPKVLDGAQISTAEYEIMKDLIIPLGRVPQ 655

Query: 803  FSTQSGG 783
            FS QSGG
Sbjct: 656  FSMQSGG 662


>ref|XP_002280625.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Vitis vinifera]
            gi|731415977|ref|XP_010659731.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Vitis vinifera] gi|731415979|ref|XP_010659732.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Vitis vinifera]
            gi|296089830|emb|CBI39649.3| unnamed protein product
            [Vitis vinifera]
          Length = 659

 Score =  733 bits (1892), Expect = 0.0
 Identities = 391/662 (59%), Positives = 486/662 (73%), Gaps = 43/662 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MA D+ + VKDAVHKLQL LLEGI+NE+QLFAAGSLMS+SDY+DVVTERTIAN+CGYPLC
Sbjct: 1    MAGDQPIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPSER  KGHYRISLKEHKVYDLHETYMYCSS C++NSR+FAGSLQEER S LNS +
Sbjct: 61   SNSLPSERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFAGSLQEERCSVLNSER 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            +N +L +F   SL S   +GK+GDLGLSELKI+E  + KAGEVS+E+WIGPSNAIEGYVP
Sbjct: 121  INGILRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVP 180

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAESNE-LDFIFNNMNFSSSIITQDEYSISK-------- 1947
            QRDRNLKP+  KN K+ SK  +++ +   +F+ + M+F  +IIT+DEYSISK        
Sbjct: 181  QRDRNLKPKNIKNRKEGSKSSNSKMDSGKNFVIDEMDFVRTIITEDEYSISKSSKGLKDT 240

Query: 1946 ------------------LPGPKKIVPQMEGE------EPKGKVTRE------DVSRVSP 1857
                              L   +K  P ++ +      E KG+ +R         + V  
Sbjct: 241  TSHAKSKEPKEKASIGDQLSMLEKSAPPIQNDSESKLRESKGRRSRVIFKDEFSTAEVPS 300

Query: 1856 GISQNDPSRKAMTEETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQG-DGK 1680
              SQ+      +  + +++                      K  RSVTWADE     D +
Sbjct: 301  VPSQSGSELNGVKGKEEYHTENAAQLGPTKLKSCLKPSGGKKVTRSVTWADEKMDSADSR 360

Query: 1679 NLCEFRELDNKKEAVVDSNSR-NTEVGEE--SYRFSSAEACARALSQAAEVVASGKSDVS 1509
            + C+ REL+ KKE   D N   + +VG++  + RF+SAEACA ALSQAAE VASG++D++
Sbjct: 361  DFCKVRELEVKKE---DPNGLGDIDVGDDDNALRFASAEACAIALSQAAEAVASGETDMT 417

Query: 1508 DAVSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDST 1329
            DAVSEA +IILP P ++DE E+ ++ D+++ +P  LKWP KPG  + D+FDS+DSWYD+ 
Sbjct: 418  DAVSEARIIILPHPRDMDEGESLKDADLLEPEPVPLKWPIKPGISHSDIFDSDDSWYDTP 477

Query: 1328 PEGFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRS 1149
            PEGFSLTLSPF+TM+MALFAWI+SSS+AYIYGRDES+HEEYLS+NGREYP+KIV+ DGRS
Sbjct: 478  PEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTDGRS 537

Query: 1148 SEIKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIV 969
            SEIKQTL+GCLAR+LPGLVA+LRLP P+S LEQG+ RLLDTMSFVD LPSFRMKQWQVIV
Sbjct: 538  SEIKQTLAGCLARALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQVIV 597

Query: 968  LLLLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQS 789
            LL +DALSV +IPALT +M  +R+L  KV + AQ+SAEEYE+MKDLIIPLGRVPQFS QS
Sbjct: 598  LLFIDALSVCQIPALTPHMISKRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFSAQS 657

Query: 788  GG 783
            GG
Sbjct: 658  GG 659


>ref|XP_012072543.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Jatropha curcas]
            gi|802599693|ref|XP_012072544.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            [Jatropha curcas] gi|802599695|ref|XP_012072546.1|
            PREDICTED: putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog [Jatropha curcas]
            gi|643730423|gb|KDP37902.1| hypothetical protein
            JCGZ_05341 [Jatropha curcas]
          Length = 654

 Score =  702 bits (1811), Expect = 0.0
 Identities = 378/653 (57%), Positives = 459/653 (70%), Gaps = 41/653 (6%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAKD+ ++VKD VHKLQLSLLEGIKNE QLF AGSLMS+SDY+DVVTER+IAN+CGYPLC
Sbjct: 1    MAKDQSISVKDTVHKLQLSLLEGIKNEDQLFTAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLP +RP KG YRISLKEHKVYDLHETYMYCSSSC++NSRAFAGSLQEER S LN  K
Sbjct: 61   NNSLPLDRPYKGRYRISLKEHKVYDLHETYMYCSSSCIVNSRAFAGSLQEERCSVLNPMK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            L+E+L MF  LSL+SK N+ +NGDLGLS LKIQEK +   GEVS+EEWIGPSNAIEGYVP
Sbjct: 121  LDEILRMFNNLSLDSK-NLVENGDLGLSNLKIQEKIESNVGEVSLEEWIGPSNAIEGYVP 179

Query: 2099 QRDRNLKPQQTKNLKKESKPKHAES-NELDFIFNNMNFSSSIITQDEYSISKLP-GPKKI 1926
            QRDR+ K    KN K+ SK    +  N+ +  FN+M+F S+IIT+DEYSISK P G    
Sbjct: 180  QRDRDFKGSSFKNPKEASKAISTKPVNKQECFFNDMDFMSTIITKDEYSISKAPSGSIST 239

Query: 1925 VPQMEGEEPKGKVTRE--DVSRVSPG---------------------------------- 1854
               M+ +E +GK T +  +    SPG                                  
Sbjct: 240  GSDMKLQEQRGKETHKGSEAQSSSPGKHAFVKTSRKSKGGRSKQIIKEELSDKDLLSASN 299

Query: 1853 ISQNDPSRKAMTEETDHNHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQG-DGKN 1677
             SQ   S      E                          K + SVTWADE       +N
Sbjct: 300  YSQTGSSMNNAEPEEKSGAKQAANLSESMLKPSLKPSGAKKSVHSVTWADEKFDNAKSRN 359

Query: 1676 LCEFRELDNKKEA--VVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKSDVSDA 1503
            LCE RE+++ K    ++DS   N +      RF SAEACA ALSQAAE VASG +DV+DA
Sbjct: 360  LCEVREMEDTKSGLEILDSLENNND---NMLRFESAEACAIALSQAAEAVASGDADVNDA 416

Query: 1502 VSEAGVIILPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDSTPE 1323
            +SEAGVI+LP P+ +   ++ +  D+++ + + LKWP+KP     DLFDSEDSWYD+ PE
Sbjct: 417  MSEAGVIVLPQPHHLAPGDSTDIADMLERESASLKWPAKPAVEQSDLFDSEDSWYDAPPE 476

Query: 1322 GFSLTLSPFSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSSE 1143
            GFSL LSPF+TM+MALFAW++SSS+A+IYGRDE+ HE+YLS+NGREYP+KIV+ DGRSSE
Sbjct: 477  GFSLMLSPFATMWMALFAWVTSSSLAFIYGRDETAHEDYLSVNGREYPQKIVLRDGRSSE 536

Query: 1142 IKQTLSGCLARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLL 963
            IK T+ GCL+R+ PG+VA+LRLP PISTLEQG  RLLDTMSFVD LP FRMKQWQV   L
Sbjct: 537  IKLTVEGCLSRAFPGVVADLRLPIPISTLEQGAGRLLDTMSFVDALPPFRMKQWQVTAFL 596

Query: 962  LLDALSVSRIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQ 804
             ++ALSV RIPALT YMT RR++L +VL+GAQISAEEYE+MKDL+IPLGR P+
Sbjct: 597  FIEALSVCRIPALTSYMTNRRMVLHQVLDGAQISAEEYEVMKDLMIPLGRDPR 649


>ref|XP_002521936.1| conserved hypothetical protein [Ricinus communis]
            gi|223538861|gb|EEF40460.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 645

 Score =  667 bits (1722), Expect = 0.0
 Identities = 366/645 (56%), Positives = 453/645 (70%), Gaps = 33/645 (5%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAK+E ++VKD V+KLQLSLLEGI+NE QL AAGSLMS+SDY+DVV ER+I+N+CGYPLC
Sbjct: 1    MAKEESVSVKDTVYKLQLSLLEGIENEDQLLAAGSLMSRSDYEDVVVERSISNLCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPS+RP KG YRISLKEH+VYDL ETYMYCSSSCL+NSRAF+ SLQE+R S LN  K
Sbjct: 61   NNSLPSDRPYKGRYRISLKEHRVYDLQETYMYCSSSCLVNSRAFSESLQEKRCSVLNPIK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNE+L  F  L+L+S+  +G++GDLGLS LKIQEK +   G+VS+EEWIGPSNAIEGYVP
Sbjct: 121  LNEILRKFNDLTLDSE-GLGRSGDLGLSNLKIQEKSETNVGKVSLEEWIGPSNAIEGYVP 179

Query: 2099 QRDRNLKPQQTKNLKKESKP--KHAESNELDFIFNNMNFSSSIITQDEYSISKLPGPKKI 1926
            Q DR+  P   KN K+  K   K   S + D  F++ +F+S+IIT DEYSISK  GP  +
Sbjct: 180  QGDRDPNPS-LKNHKEGLKAICKKPVSKQ-DCFFSDTDFTSTIITNDEYSISK--GPSGL 235

Query: 1925 VP-----QMEGEEPKG---------KVTRED---VSRVSPGIS-----------QNDPSR 1830
                   +++ +  KG          + ++D    SR S G             Q+ PS 
Sbjct: 236  TSTASDIKLQAQTGKGHEGLNAQLSSLRKQDSIKASRKSKGRRKEKVIKEQLNFQDLPSS 295

Query: 1829 KAMTEETDH--NHGXXXXXXXXXXXXXXXXXXXXKEIRSVTWADENAQGDG-KNLCEFRE 1659
               T E +                          +  RSVTWADE     G +NLCE +E
Sbjct: 296  SYYTAEAEDISQATGAANLNESVLKPSLKSSGAKRSNRSVTWADERVDNAGSRNLCEVQE 355

Query: 1658 LDNKKEAVVDSNSRNTEVGEESYRFSSAEACARALSQAAEVVASGKSDVSDAVSEAGVII 1479
            ++   E+   S S N        RF SAEACA ALSQAAE VASG +DV+ A+SEAG+I+
Sbjct: 356  MEQTNESHEISESANKGDDGHMLRFESAEACAVALSQAAEAVASGDADVNKAMSEAGIIV 415

Query: 1478 LPPPYEVDEAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLTLSP 1299
            LPP  ++ +    E  D+++ + + LKWP+KPG P  DLFD EDSWYD+ PEGFSLTLSP
Sbjct: 416  LPPSQDLGQGGNVEKNDMIEQESASLKWPTKPGIPQSDLFDPEDSWYDAPPEGFSLTLSP 475

Query: 1298 FSTMFMALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGC 1119
            F+TM+MALFAW++SSS+AYIYGRDES HE+YLS+NGREYPRKIV+ DGRSSEI+ T   C
Sbjct: 476  FATMWMALFAWVTSSSLAYIYGRDESAHEDYLSVNGREYPRKIVLRDGRSSEIRLTAESC 535

Query: 1118 LARSLPGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVS 939
            LAR+ PGLVA LRLP P+STLEQG  RLL+TMSFVD LP+FR KQWQVI LL ++ALSV 
Sbjct: 536  LARTFPGLVANLRLPIPVSTLEQGAGRLLETMSFVDALPAFRTKQWQVIALLFIEALSVC 595

Query: 938  RIPALTQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQ 804
            RIPALT YMT RR++L +VL+GA ISAEEY+IMKD ++PLGR PQ
Sbjct: 596  RIPALTSYMTSRRMVLHQVLDGAHISAEEYDIMKDFMVPLGRDPQ 640


>ref|XP_002321396.2| hypothetical protein POPTR_0015s01330g [Populus trichocarpa]
            gi|550321730|gb|EEF05523.2| hypothetical protein
            POPTR_0015s01330g [Populus trichocarpa]
          Length = 696

 Score =  655 bits (1689), Expect = 0.0
 Identities = 370/703 (52%), Positives = 459/703 (65%), Gaps = 85/703 (12%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAKD+   VKD ++KLQLSLL+GI+NE QL AAGS+MS SDY+DVVTERTIAN+CGYPLC
Sbjct: 1    MAKDQSTVVKDTIYKLQLSLLDGIQNEDQLLAAGSIMSHSDYEDVVTERTIANLCGYPLC 60

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             +SLPS+RP KG YRISLKEHKVYDLHETYMYCSSSC+INSR F+GSLQEER   LN AK
Sbjct: 61   GNSLPSDRPQKGRYRISLKEHKVYDLHETYMYCSSSCVINSRTFSGSLQEERCLVLNPAK 120

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LNEVL +F+  SL S+ ++GKNGDLG S LKI+EK +   GEVS E+WIGPSNAIEGYVP
Sbjct: 121  LNEVLMLFDNFSLGSEGSLGKNGDLGFSNLKIEEKTEKVEGEVSFEQWIGPSNAIEGYVP 180

Query: 2099 QRDR------------------------NLKPQ---QTKNLKKESKPKHA---------- 2031
            QRDR                        +  P     T   KK  KPK            
Sbjct: 181  QRDRLEEDFIIDDMDFTSSIITQDEYSISKTPSGLTDTNTDKKTQKPKAKGSHKGSKGSK 240

Query: 2030 -----ESNELDFIFNNMNFSSSII-TQDEYSISKLPG-------PKKIVPQME------- 1911
                 +S++ +   N+MNF+S+II TQDEYSISK P          KI  Q E       
Sbjct: 241  AKGTKQSSKQESFINDMNFTSTIIITQDEYSISKSPSGLAGTTSKTKIQKQKEKVSQKSS 300

Query: 1910 ----------GEEPKGKVTREDVSRV------------SPGISQNDPSRKAMTEETDHNH 1797
                      G     +  +ED S+V            SP  S    S     E  + + 
Sbjct: 301  ENQSSATRKVGSSKTSRKVKEDRSKVAIKDELSSQDLSSPFDSCQTSSITITAEAKEKSV 360

Query: 1796 GXXXXXXXXXXXXXXXXXXXXKEI-RSVTWADENAQGDG-KNLCEFRELDNKKEA--VVD 1629
                                 K++ RSVTWADE     G ++LCE R +++ K    +VD
Sbjct: 361  SEKAAKPVESSLKPSLKTSGAKQLTRSVTWADEKVGSSGSRDLCEVRGMEDTKAGPEIVD 420

Query: 1628 SNSRNTEVGEESY--RFSSAEACARALSQAAEVVASGKSDVSDAVSEAGVIILPPPYEVD 1455
                N +  ++ Y  +F SAEACA+ALSQAAE VASG +D S+A+SEAG++ILP P+++D
Sbjct: 421  ----NIDKRDDGYVSKFESAEACAKALSQAAEAVASGDADASNALSEAGLVILPQPHDLD 476

Query: 1454 EAEAEENGDVMDTDPSVLKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLTLSPFSTMFMAL 1275
            + +  E+ DV+D + S +KWP KPG P  + FD E+SWYD+ PEGFSL LS F+T++MAL
Sbjct: 477  QGDPMEDVDVLDEESSTIKWPGKPGIPQSECFDPENSWYDAPPEGFSLELSSFATIWMAL 536

Query: 1274 FAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGCLARSLPGL 1095
            FAW++SSS+AY+YG+DES HEEYL +NGREYPRKIV+ DGRS EI+QT+ GCL R+ P +
Sbjct: 537  FAWVTSSSLAYVYGKDESSHEEYLMVNGREYPRKIVLGDGRSFEIQQTIEGCLGRAFPVV 596

Query: 1094 VAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPALTQY 915
            VA+LRLP PISTLEQG A LL TMSFVD +P+FRMKQWQVI LL ++ALSV RIPAL  Y
Sbjct: 597  VADLRLPIPISTLEQGAANLLGTMSFVDAVPAFRMKQWQVIALLFIEALSVCRIPALISY 656

Query: 914  MTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQSG 786
            M  RR+    V++G ++SAEEYE+MKDL+IPLGR PQFS QSG
Sbjct: 657  MDNRRM----VVDGVRMSAEEYEVMKDLMIPLGRAPQFSPQSG 695


>ref|XP_007016926.1| F2P16.20 protein, putative isoform 1 [Theobroma cacao]
            gi|508787289|gb|EOY34545.1| F2P16.20 protein, putative
            isoform 1 [Theobroma cacao]
          Length = 739

 Score =  639 bits (1647), Expect = e-180
 Identities = 359/689 (52%), Positives = 455/689 (66%), Gaps = 71/689 (10%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAK++ ++V +AVHK+QL LL+GI++E QL A+GSL+S+SDY+DVVTERTI+N CGYPLC
Sbjct: 55   MAKEQSISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCGYPLC 114

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             + LPSE   KG YRISLKEHKVYDL ETYM+CS++CLINSRAFAGSLQEER S LN AK
Sbjct: 115  ANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFAGSLQEERCSVLNHAK 174

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LN++L++F  L L+   ++GKNGDLG S L+I+E  ++KA +VS+    GPSNAIEGYVP
Sbjct: 175  LNDILSLFGDLDLDDN-DLGKNGDLGFSNLRIKENEEVKAEDVSLA---GPSNAIEGYVP 230

Query: 2099 QRDRNLKPQQTKNLKKE-----------SKPKHAESNELDF------------------- 2010
            QR+   KP   KN K +            K ++  +NELDF                   
Sbjct: 231  QRELISKPTPPKNNKNKVFDSSSSKLGSKKEEYFVNNELDFAGTIIMNDEYIISKKPGSF 290

Query: 2009 ---------------IFNNMNFSSSIITQDEYSISKLPGPKK---IVPQMEGEEPKGKVT 1884
                           + N M+F+S II  DEY+ISK+P   K       ++  E KG   
Sbjct: 291  KQGDRTKLSSKKEDFVINEMDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEVEEKGICK 350

Query: 1883 RED----VSRVSPGISQND------PSRK---------AMTEETDHNHGXXXXXXXXXXX 1761
              +    +S  S  + + D      PS K         +  E     H            
Sbjct: 351  DSEDKCVISGSSSALREKDSSIVELPSTKNVYQSGLDTSSAEAEKETHADKAVTSSETVL 410

Query: 1760 XXXXXXXXXKEI-RSVTWADENAQ---GDGKNLCEFRELDNKKEAVVDSNSRNTEVGEES 1593
                     K++ R VTWAD+      G+G NLCE +E++  K     S S      +  
Sbjct: 411  KSSLKSAGAKKLNRFVTWADKKKADNAGNG-NLCEVKEMETMKGDSEISGSAEDGGDDNM 469

Query: 1592 YRFSSAEACARALSQAAEVVASGKSDVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTD 1413
             RF SAEACA ALS+AAE VASG SDV+DAV E G+IILP   EVD+ E  E+GD+++ +
Sbjct: 470  LRFVSAEACAMALSKAAEAVASGDSDVTDAVYENGLIILPSLCEVDKEEPMEDGDMLEPE 529

Query: 1412 PSVLKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLTLSPFSTMFMALFAWISSSSVAYIYG 1233
             + +KWP KPG P+ D+F+ EDSW+D+ PEGFSLTLS F+TM+ ALF WI+SSS+AYIYG
Sbjct: 530  TAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYG 589

Query: 1232 RDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGCLARSLPGLVAELRLPTPISTLE 1053
            RDES+HEEYLSINGREYPRKI + DGRSSEIK+TL+ C++R+LP +V +LRLP PISTLE
Sbjct: 590  RDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALPAIVTDLRLPIPISTLE 649

Query: 1052 QGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPALTQYMTGRRVLLTKVLEG 873
            QG+  L+DT+SF++ LP+FRMKQWQVIVLL +DALSV RIPALT +MT  R+LL KVL+G
Sbjct: 650  QGMGHLIDTISFMEALPAFRMKQWQVIVLLFIDALSVCRIPALTPHMTNGRMLLHKVLDG 709

Query: 872  AQISAEEYEIMKDLIIPLGRVPQFSTQSG 786
            AQIS EEYE+MKDLIIPLGR P FS QSG
Sbjct: 710  AQISMEEYEVMKDLIIPLGRAPHFSAQSG 738


>ref|XP_012479689.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Gossypium raimondii]
          Length = 695

 Score =  638 bits (1646), Expect = e-180
 Identities = 362/693 (52%), Positives = 461/693 (66%), Gaps = 75/693 (10%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAKD+ ++V +AVHK+QL LL+GI++E QL ++GSL+S+SDY+DVVTER+I+N CGYPLC
Sbjct: 8    MAKDQSISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVVTERSISNTCGYPLC 67

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             + LPSE   +G YRISLKEH+VYDL ET  +CS+ CLINSRAFAGSLQEER S LN AK
Sbjct: 68   QNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCSADCLINSRAFAGSLQEERCSVLNHAK 127

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LN +L++F+ + LN + ++GKNGDLG S LKI+E  ++KAGEVS    +GPSNAIEGYVP
Sbjct: 128  LNAILSLFDDVDLNDE-DLGKNGDLGFSNLKIKENEEIKAGEVSS---VGPSNAIEGYVP 183

Query: 2099 QRDRNLKPQQTKNLKK-----------ESKPKHAESNELDF------------------- 2010
            QR+   KP  +KN K            + K  +  +NE+DF                   
Sbjct: 184  QRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYTTSKNPGSL 243

Query: 2009 -------------IFNNMNFSSSIITQDEYSISKLP-GPKKIVPQMEGEEPKGKVTREDV 1872
                         + N M+F+S II  DEY++SK P G ++     + ++ +G+   +D 
Sbjct: 244  RQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSKLKKTEGQGVCKDF 303

Query: 1871 ------SRVSPGISQND------PSRKAM---------TEETDHNHGXXXXXXXXXXXXX 1755
                  S  S  +++ D      PS K +          E     H              
Sbjct: 304  EEKCMRSESSSALTKEDSGIVEMPSTKCVDQSGLDTINAEAEKETHSDKAVASSGVVLKS 363

Query: 1754 XXXXXXXKEI-RSVTWADE-NAQGDGK-NLCEFRELDNKKEAVVDSNSRNTEVGEES--- 1593
                   K++ RSVTWAD+ N  G  K +LCE +E+D +K      N    E G++    
Sbjct: 364  SLKSAGAKKLNRSVTWADKKNVDGARKGSLCEVKEMDAQKGD--SENLGRAEDGDDDDNM 421

Query: 1592 YRFSSAEACARALSQAAEVVASGKSDVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTD 1413
             RF+SAEACA ALS+AA  VASG SDV+DAVSEAG+IIL  P E D+ E  EN D ++ +
Sbjct: 422  LRFASAEACAMALSEAAAAVASGDSDVNDAVSEAGLIILAHPLEADKEEKVENIDTLEAE 481

Query: 1412 PSV----LKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLTLSPFSTMFMALFAWISSSSVA 1245
            P      +KWP+KPG P  D FD EDSW+D+ PEGFSLTLS F+TM+ ALF WI+SSS+A
Sbjct: 482  PEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLA 541

Query: 1244 YIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGCLARSLPGLVAELRLPTPI 1065
            YIYGRDE++HEEYLS+NGREYP+KIV+ DGRSSEIK+TL+GC++R+ P +V  LRLP PI
Sbjct: 542  YIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRAFPAIVTALRLPIPI 601

Query: 1064 STLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPALTQYMTGRRVLLTK 885
            STLEQG+ RLLDTMSFV+ LP+FRMKQWQVIVLLL+DALSV RIPALT +MT  R+LL K
Sbjct: 602  STLEQGMGRLLDTMSFVEALPAFRMKQWQVIVLLLIDALSVCRIPALTPHMTNGRMLLHK 661

Query: 884  VLEGAQISAEEYEIMKDLIIPLGRVPQFSTQSG 786
            VL+GAQIS EEYE+MKDLIIPLGR P FS QSG
Sbjct: 662  VLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSG 694


>gb|KHG00854.1| hypothetical protein F383_23706 [Gossypium arboreum]
          Length = 729

 Score =  635 bits (1638), Expect = e-179
 Identities = 356/691 (51%), Positives = 460/691 (66%), Gaps = 75/691 (10%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAKD+ ++V +AVHK+QL LL+GI++E QL ++GSL+S+SDY+DV+TER+I+N CGYPLC
Sbjct: 8    MAKDQSISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVITERSISNTCGYPLC 67

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             + LPSE   +G YRISLKEH+VYDL ET  +C + CLINSRAFAGSLQEER S LN AK
Sbjct: 68   QNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCLADCLINSRAFAGSLQEERCSVLNHAK 127

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LN +L++F+ + LN K ++GKNGDLG S LKI+E  ++KAGE+S    +GPSNAIEGYVP
Sbjct: 128  LNAILSLFDDVDLNDK-DLGKNGDLGFSNLKIKENEEIKAGEISS---VGPSNAIEGYVP 183

Query: 2099 QRDRNLKPQQTKNLKK-----------ESKPKHAESNELDF------------------- 2010
            QR+   KP  +KN K            + K  +  +NE+DF                   
Sbjct: 184  QRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYTTSKNPGSL 243

Query: 2009 -------------IFNNMNFSSSIITQDEYSISKLP-GPKKIVPQMEGEEPKGKVTREDV 1872
                         + N M+F+S II  DEY++SK P G ++     + E+ +GK   +D 
Sbjct: 244  RQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSKLEKTEGKGVCKDF 303

Query: 1871 ------SRVSPGISQND------PSRKAM---------TEETDHNHGXXXXXXXXXXXXX 1755
                  S  S  +++ D      PS K +          E     H              
Sbjct: 304  EEKCMRSESSSALTKEDSGIVQMPSTKCVDQSGLDTINAEAEKETHSDKAMASSGVVLKS 363

Query: 1754 XXXXXXXKEI-RSVTWADENAQGDGK--NLCEFRELDNKK-EAVVDSNSRNTEVGEESYR 1587
                   K++ RSVTWAD+      +  +LCE +E+D +K ++     + + +  ++  R
Sbjct: 364  SLKPAGAKKLNRSVTWADKKNVDSARKGSLCEVKEMDAQKGDSENIGRAEDGDADDKMLR 423

Query: 1586 FSSAEACARALSQAAEV--VASGKSDVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTD 1413
            F+SAEACA ALS+AA    VASG SDV+DAVSEAG+IILP P E D+ E  EN D ++ D
Sbjct: 424  FASAEACAMALSKAAAAAAVASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEAD 483

Query: 1412 PSV----LKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLTLSPFSTMFMALFAWISSSSVA 1245
            P      +KWP+KPG P  D FD EDSW+D+ PEGFSLTLS F+TM+ ALF WI+SSS+A
Sbjct: 484  PEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLA 543

Query: 1244 YIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGCLARSLPGLVAELRLPTPI 1065
            YIYGRDE++HEEYLS+NGREYP+KIV+ DGRSSEIK+TL+GC++R+LP +V  LRLP PI
Sbjct: 544  YIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPI 603

Query: 1064 STLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPALTQYMTGRRVLLTK 885
            STLEQG+ RLLDTMSFV+ LP+FRMKQWQV+VLLL+DALSV RIPALT +MT  R+LL K
Sbjct: 604  STLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHK 663

Query: 884  VLEGAQISAEEYEIMKDLIIPLGRVPQFSTQ 792
            VL+GAQIS EEYE+MKDLIIPLGR P FS Q
Sbjct: 664  VLDGAQISLEEYEVMKDLIIPLGRAPHFSAQ 694


>ref|XP_012479683.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Gossypium raimondii]
            gi|823159708|ref|XP_012479685.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|823159710|ref|XP_012479686.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|823159712|ref|XP_012479687.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|823159714|ref|XP_012479688.1| PREDICTED: putative RNA
            polymerase II subunit B1 CTD phosphatase RPAP2 homolog
            isoform X1 [Gossypium raimondii]
            gi|763764410|gb|KJB31664.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764411|gb|KJB31665.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764412|gb|KJB31666.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764413|gb|KJB31667.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
            gi|763764414|gb|KJB31668.1| hypothetical protein
            B456_005G200700 [Gossypium raimondii]
          Length = 708

 Score =  633 bits (1633), Expect = e-178
 Identities = 362/706 (51%), Positives = 461/706 (65%), Gaps = 88/706 (12%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAKD+ ++V +AVHK+QL LL+GI++E QL ++GSL+S+SDY+DVVTER+I+N CGYPLC
Sbjct: 8    MAKDQSISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVVTERSISNTCGYPLC 67

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             + LPSE   +G YRISLKEH+VYDL ET  +CS+ CLINSRAFAGSLQEER S LN AK
Sbjct: 68   QNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCSADCLINSRAFAGSLQEERCSVLNHAK 127

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LN +L++F+ + LN + ++GKNGDLG S LKI+E  ++KAGEVS    +GPSNAIEGYVP
Sbjct: 128  LNAILSLFDDVDLNDE-DLGKNGDLGFSNLKIKENEEIKAGEVSS---VGPSNAIEGYVP 183

Query: 2099 QRDRNLKPQQTKNLKK-----------ESKPKHAESNELDF------------------- 2010
            QR+   KP  +KN K            + K  +  +NE+DF                   
Sbjct: 184  QRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYLDFTSAVIM 243

Query: 2009 --------------------------IFNNMNFSSSIITQDEYSISKLP-GPKKIVPQME 1911
                                      + N M+F+S II  DEY++SK P G ++     +
Sbjct: 244  NNEYTTSKNPGSLRQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSK 303

Query: 1910 GEEPKGKVTREDV------SRVSPGISQND------PSRKAM---------TEETDHNHG 1794
             ++ +G+   +D       S  S  +++ D      PS K +          E     H 
Sbjct: 304  LKKTEGQGVCKDFEEKCMRSESSSALTKEDSGIVEMPSTKCVDQSGLDTINAEAEKETHS 363

Query: 1793 XXXXXXXXXXXXXXXXXXXXKEI-RSVTWADE-NAQGDGK-NLCEFRELDNKKEAVVDSN 1623
                                K++ RSVTWAD+ N  G  K +LCE +E+D +K      N
Sbjct: 364  DKAVASSGVVLKSSLKSAGAKKLNRSVTWADKKNVDGARKGSLCEVKEMDAQKGD--SEN 421

Query: 1622 SRNTEVGEES---YRFSSAEACARALSQAAEVVASGKSDVSDAVSEAGVIILPPPYEVDE 1452
                E G++     RF+SAEACA ALS+AA  VASG SDV+DAVSEAG+IIL  P E D+
Sbjct: 422  LGRAEDGDDDDNMLRFASAEACAMALSEAAAAVASGDSDVNDAVSEAGLIILAHPLEADK 481

Query: 1451 AEAEENGDVMDTDPSV----LKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLTLSPFSTMF 1284
             E  EN D ++ +P      +KWP+KPG P  D FD EDSW+D+ PEGFSLTLS F+TM+
Sbjct: 482  EEKVENIDTLEAEPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMW 541

Query: 1283 MALFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGCLARSL 1104
             ALF WI+SSS+AYIYGRDE++HEEYLS+NGREYP+KIV+ DGRSSEIK+TL+GC++R+ 
Sbjct: 542  NALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRAF 601

Query: 1103 PGLVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPAL 924
            P +V  LRLP PISTLEQG+ RLLDTMSFV+ LP+FRMKQWQVIVLLL+DALSV RIPAL
Sbjct: 602  PAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVIVLLLIDALSVCRIPAL 661

Query: 923  TQYMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQSG 786
            T +MT  R+LL KVL+GAQIS EEYE+MKDLIIPLGR P FS QSG
Sbjct: 662  TPHMTNGRMLLHKVLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSG 707


>gb|KHG00855.1| hypothetical protein F383_23706 [Gossypium arboreum]
          Length = 708

 Score =  630 bits (1626), Expect = e-177
 Identities = 358/704 (50%), Positives = 462/704 (65%), Gaps = 86/704 (12%)
 Frame = -3

Query: 2639 MAKDEVLTVKDAVHKLQLSLLEGIKNESQLFAAGSLMSQSDYQDVVTERTIANMCGYPLC 2460
            MAKD+ ++V +AVHK+QL LL+GI++E QL ++GSL+S+SDY+DV+TER+I+N CGYPLC
Sbjct: 8    MAKDQSISVSEAVHKIQLHLLDGIRDEKQLISSGSLISRSDYEDVITERSISNTCGYPLC 67

Query: 2459 ISSLPSERPLKGHYRISLKEHKVYDLHETYMYCSSSCLINSRAFAGSLQEERSSTLNSAK 2280
             + LPSE   +G YRISLKEH+VYDL ET  +C + CLINSRAFAGSLQEER S LN AK
Sbjct: 68   QNPLPSEPRRRGRYRISLKEHRVYDLQETSRFCLADCLINSRAFAGSLQEERCSVLNHAK 127

Query: 2279 LNEVLNMFEGLSLNSKVNMGKNGDLGLSELKIQEKPDMKAGEVSVEEWIGPSNAIEGYVP 2100
            LN +L++F+ + LN K ++GKNGDLG S LKI+E  ++KAGE+S    +GPSNAIEGYVP
Sbjct: 128  LNAILSLFDDVDLNDK-DLGKNGDLGFSNLKIKENEEIKAGEISS---VGPSNAIEGYVP 183

Query: 2099 QRDRNLKPQQTKNLKK-----------ESKPKHAESNELDF------------------- 2010
            QR+   KP  +KN K            + K  +  +NE+DF                   
Sbjct: 184  QRELVSKPSSSKNSKNGVFDSSSSKLGDIKGDYFVNNEIDFTSAVIMNNEYTTSKNPGSL 243

Query: 2009 -------------IFNNMNFSSSIITQDEYSISKLP-GPKKIVPQMEGEEPKGKVTREDV 1872
                         + N M+F+S II  DEY++SK P G ++     + E+ +GK   +D 
Sbjct: 244  RQSQRTKPSSMKDVINEMDFTSEIIMNDEYTVSKTPPGSRQGSSGSKLEKTEGKGVCKDF 303

Query: 1871 ------SRVSPGISQND------PSRKAM---------TEETDHNHGXXXXXXXXXXXXX 1755
                  S  S  +++ D      PS K +          E     H              
Sbjct: 304  EEKCMRSESSSALTKEDSGIVQMPSTKCVDQSGLDTINAEAEKETHSDKAMASSGVVLKS 363

Query: 1754 XXXXXXXKEI-RSVTWADENAQGDGK--NLCEFRELDNKK-EAVVDSNSRNTEVGEESYR 1587
                   K++ RSVTWAD+      +  +LCE +E+D +K ++     + + +  ++  R
Sbjct: 364  SLKPAGAKKLNRSVTWADKKNVDSARKGSLCEVKEMDAQKGDSENIGRAEDGDADDKMLR 423

Query: 1586 FSSAEACARALSQAAEV--VASGKSDVSDAVSEAGVIILPPPYEVDEAEAEENGDVMDTD 1413
            F+SAEACA ALS+AA    VASG SDV+DAVSEAG+IILP P E D+ E  EN D ++ D
Sbjct: 424  FASAEACAMALSKAAAAAAVASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEAD 483

Query: 1412 PSV----LKWPSKPGFPNYDLFDSEDSWYDSTPEGFSLT-----------LSPFSTMFMA 1278
            P      +KWP+KPG P  D FD EDSW+D+ PEGFSLT           LS F+TM+ A
Sbjct: 484  PEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTVSLIDGQECHKLSTFATMWNA 543

Query: 1277 LFAWISSSSVAYIYGRDESYHEEYLSINGREYPRKIVMEDGRSSEIKQTLSGCLARSLPG 1098
            LF WI+SSS+AYIYGRDE++HEEYLS+NGREYP+KIV+ DGRSSEIK+TL+GC++R+LP 
Sbjct: 544  LFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPA 603

Query: 1097 LVAELRLPTPISTLEQGIARLLDTMSFVDPLPSFRMKQWQVIVLLLLDALSVSRIPALTQ 918
            +V  LRLP PISTLEQG+ RLLDTMSFV+ LP+FRMKQWQV+VLLL+DALSV RIPALT 
Sbjct: 604  IVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTP 663

Query: 917  YMTGRRVLLTKVLEGAQISAEEYEIMKDLIIPLGRVPQFSTQSG 786
            +MT  R+LL KVL+GAQIS EEYE+MKDLIIPLGR P FS QSG
Sbjct: 664  HMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSG 707