BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00007813
         (1613 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   430   e-121
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        415   e-121
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   404   e-117
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   427   e-116
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   408   e-116
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                403   e-112
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        403   e-112
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               403   e-112
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     401   e-112
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   410   e-111
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   410   e-111
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   391   e-111
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   376   e-110
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   382   e-110
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   393   e-110
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    382   e-109
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   394   e-108
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   394   e-108
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   394   e-108
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   374   e-107

>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  430 bits (1105), Expect(2) = e-121
 Identities = 211/410 (51%), Positives = 278/410 (67%), Gaps = 1/410 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HM   R  F  +K+     V +GD+    V+G G + IKM+DG++R+L N  YVP L++
Sbjct: 628  YHMAYSRDLFTTFKEWNG-SVKLGDDGELGVKGSGSVQIKMYDGLVRTL-NAWYVPGLRK 685

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNE 997
            NLIS+G L+  G+ F      L+V KG+L++MKG  +HG+Y L G + +  ++    V E
Sbjct: 686  NLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMGSSVLGTAA----VEE 741

Query: 996  DR-TELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQ 820
            D  TELWH R+GHM  KGL  LS Q L    +  K+ FCETCV+ K  R+ F  G+H   
Sbjct: 742  DNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTN 801

Query: 819  RPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGN 640
              L Y+H DLWG     +H G RY+++ +DD+SRK W+Y LK+KDE F  FK W ++V  
Sbjct: 802  GVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEK 861

Query: 639  QTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKC 460
            +TG  VKTLRTDNGLEFCN +FD FC ++GI RHRTVRHTPQQNGVAER+N+T++ + +C
Sbjct: 862  RTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARC 921

Query: 459  MVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAH 280
            M I  GL+K F  EA  TA YL+NRSPS+AI+FKTP+E+WSGKP   S L++FGC AYAH
Sbjct: 922  MRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAH 981

Query: 279  QIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM 130
              +GKLE RA+KC+ LGY TGVKGYRL    ++  K I SRDV F+E  M
Sbjct: 982  VSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM 1031



 Score = 37.0 bits (84), Expect(2) = e-121
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDC------------YDLKNKQKAQALEPQNNAALEAEIDSLHVITVSE 1398
            C+HC + GHF+++C             ++     AQ    + +++ E E     V+TVS 
Sbjct: 556  CFHCKEKGHFRKNCPQRQKGIGSGVGMEIAQVVVAQKYXEKXDSSDEGE--GGDVLTVST 613

Query: 1397 SEMNREWILDSGCTF 1353
            S     WILD+G ++
Sbjct: 614  SSSAESWILDTGASY 628


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  415 bits (1067), Expect(2) = e-121
 Identities = 210/407 (51%), Positives = 278/407 (68%), Gaps = 1/407 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIP-IKMHDGIIRSLYNVRYVPNLK 1180
            FH+CP ++ F  Y+ ++  +V MG+NN   + GI      +    ++RSL+ VR+ P LK
Sbjct: 300  FHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLK 359

Query: 1179 RNLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVN 1000
            RNLISLG+L+  G+ FKS    L+V KG+ I+MKG  ++GLY L G +       S    
Sbjct: 360  RNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSE 419

Query: 999  EDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQ 820
            EDRT+LWH R+GHM  KGL+ LS Q L G D++ ++ FCE C+  KSHR  F KG H  +
Sbjct: 420  EDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSK 479

Query: 819  RPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGN 640
            + L Y H+D WG  +  +  G RYF+S++DDYSRK W+Y+LK KD+    FK W SLV N
Sbjct: 480  QVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVEN 539

Query: 639  QTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKC 460
            Q+  K+K LRTDNGLEFC+  F+ +C + GI+RH+TVR TPQQNG+AER+NRT++DK +C
Sbjct: 540  QSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRC 599

Query: 459  MVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAH 280
            M+I+  L + F  EA  TA YL+NRSPSSAI FKTPEELW+GKP    +LRVFGC AY H
Sbjct: 600  MLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLH 659

Query: 279  QIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNE 139
              +GKLEARA+K V +GYP GVKGY+  +  +   K I SRDVVF+E
Sbjct: 660  INQGKLEARALKGVFVGYPDGVKGYK--IWCKDQGKCIVSRDVVFHE 704



 Score = 50.8 bits (120), Expect(2) = e-121
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAE-----IDSLHVITVSESEMNREW 1377
            C++C K GH+ RDC++   K+K ++ E   +AA+ ++       S  ++  S S    +W
Sbjct: 236  CFYCRKEGHYIRDCFE---KKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQW 292

Query: 1376 ILDSGCTFICVP 1341
            ++DSGC+F   P
Sbjct: 293  VIDSGCSFHLCP 304


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  404 bits (1038), Expect(2) = e-117
 Identities = 208/410 (50%), Positives = 268/410 (65%), Gaps = 1/410 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            FHM P +  F ++K++    V MG++    V+GIG I I+  DG    L +VRY+PN+ R
Sbjct: 293  FHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTR 352

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNE 997
            NLISLG LED G  FKS++  LK++KG   I+KG K+  LY L G T+   S SS  V +
Sbjct: 353  NLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTEEGESHSSAEV-K 411

Query: 996  DRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQR 817
            D T LWH+R+GHM  KG++ L  +    ++ + ++ FCE CV  K HR+SF    H  + 
Sbjct: 412  DETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFAPAQHVTKE 471

Query: 816  PLVYVHVDLWGLEKHSTHGGN-RYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGN 640
             L YVH DLWG   +    GN +YF+S VDDYSRK W+Y L+ KDE F  F  W  +V N
Sbjct: 472  KLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVEN 531

Query: 639  QTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKC 460
            Q+  KVK LRTDNGLE+CN  F+ FC E+GI RH+T  +TPQQNG+AERLNRTIMDKV+ 
Sbjct: 532  QSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRS 591

Query: 459  MVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAH 280
            M+   G+ K F  EA+ TAVYLINRSPS+AINF  PEE W+G  P LS LR FGC AY H
Sbjct: 592  MLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIH 651

Query: 279  QIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM 130
              +GKL  R+ K +   YP GVKGY++ VL +K  K + SR+V+F E  M
Sbjct: 652  ADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFREQVM 699



 Score = 47.4 bits (111), Expect(2) = e-117
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDL--KNKQK-----------AQALEPQNNAALEAEIDSLHVITVS 1401
            C+ CGK GHFK+ CY    +NK K           A++ E  N A +    D   V+T S
Sbjct: 221  CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDS 280

Query: 1400 ESEMNREWILDSGCTFICVP 1341
               +  EW+LD+GC+F   P
Sbjct: 281  ---IANEWVLDTGCSFHMTP 297


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  427 bits (1097), Expect = e-116
 Identities = 214/420 (50%), Positives = 286/420 (68%)
 Frame = -3

Query: 1320 YKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKRNLISLGVLEDEG 1141
            +K+ +   V +G+N    + G G + IK +DGI R L +VRY+P LKRNLISLG+L+  G
Sbjct: 281  FKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSG 340

Query: 1140 HMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNEDRTELWHNRIGH 961
            + FKSE  +L+V +GSL +MKG  K+GLY L G+T     S+    +   T+LWH R+GH
Sbjct: 341  YTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKLWHQRLGH 400

Query: 960  MGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQRPLVYVHVDLWGL 781
            + ++GL+ L  Q + G  ++T + FCE CV  K+ R+ F K  H  Q  L Y+H DLWG 
Sbjct: 401  ISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGP 460

Query: 780  EKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGNQTGSKVKTLRTDN 601
             +  + GG RYFL+++DDYSRK W+Y LK+K ETF  FK W  LV  QT  KVK LRTDN
Sbjct: 461  SRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDN 520

Query: 600  GLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKCMVISYGLAKGF*R 421
            GLEF + +F+S C ++GI RHRTVR+TPQQNG+AER+NRTI+++V+CM+ S GL+K F  
Sbjct: 521  GLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWA 580

Query: 420  EASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAHQIEGKLEARAVKC 241
            EA+ TAV+LINRSPSSA+ FKTP+E W+GK     HL+VFGC+AY H    KLE RAVKC
Sbjct: 581  EAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKC 640

Query: 240  VLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTESEPKEQPQVKNVQIEVE 61
            + LGYP GVKGY+L +  +   K I SRDV FNE +M     ++  K+   +  +Q EVE
Sbjct: 641  IFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDM---SKQTPAKDVEGLDQLQFEVE 697


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  408 bits (1049), Expect(2) = e-116
 Identities = 212/432 (49%), Positives = 280/432 (64%), Gaps = 2/432 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGDN    V G+G I IKM DG IR+L +VR++P+LKR
Sbjct: 250  YHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKR 309

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHG-LYYLHGETQVANSSSSFSVN 1000
            NLISL  L+ +G+ +   +  LKV KGSL++MK   K+  LY+L G T V N ++  + +
Sbjct: 310  NLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVAA-VTDS 368

Query: 999  EDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQ 820
               ++LWH R+GHM   GL  LS + L     + K+ FCE C+  K  R+ F    H  +
Sbjct: 369  LSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTE 428

Query: 819  RPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGN 640
              L YVH DLWG  +  + GG RY ++IVDDYSRK W Y LK K E F  FK W ++V  
Sbjct: 429  GILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVER 488

Query: 639  QTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKC 460
            QT  KVK LRTDNG+EFC+ +F S+C  +GI RH TV HTPQQNGV ER+NRTI+ K +C
Sbjct: 489  QTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHYTVSHTPQQNGVVERMNRTIISKARC 548

Query: 459  MVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAH 280
            M+ + GL + F  EA+ TA YLINRSPS AI+ KTP E+WSG P   S L+VFGC+AYAH
Sbjct: 549  MLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIEMWSGSPANYSDLKVFGCTAYAH 608

Query: 279  QIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTESE-P 103
               GKLE RA+KC+ LGYP+GVK Y+L     +  K++ SR+V+FNE  M   K+ +  P
Sbjct: 609  VDNGKLEPRAIKCIFLGYPSGVKAYKL--WCPETQKVVISRNVIFNETVMLNDKSSTNVP 666

Query: 102  KEQPQVKNVQIE 67
             +  Q  +VQ+E
Sbjct: 667  VKSQQKASVQVE 678



 Score = 40.0 bits (92), Expect(2) = e-116
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQA-------LEPQNNAAL------EAEIDSLHVITVS 1401
            C +C + GH   DC+ L+NK+K +         E Q  AA+      +AE+   +   V 
Sbjct: 178  CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQ 237

Query: 1400 ESEMNREWILDSGCTFICVP 1341
             S+   EW+LD+GCT+   P
Sbjct: 238  TSD---EWLLDTGCTYHMCP 254


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  403 bits (1035), Expect(2) = e-112
 Identities = 216/436 (49%), Positives = 277/436 (63%), Gaps = 5/436 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGD+    V GIG + IKM DG IR+L +VR++PNLKR
Sbjct: 293  YHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 352

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGP-KKHGLYYLHGET---QVANSSSSF 1009
            +LISL  L+ +G+ +   +  LKV KGSL++MK   K   LY+L G T    VA  S S 
Sbjct: 353  SLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSL 412

Query: 1008 SVNEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAH 829
            S N D T LWH R+GHM   GL  LS + L     + K+ FCE C+  K  R+ F    H
Sbjct: 413  S-NSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 471

Query: 828  NVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSL 649
              +  L YVH DLWG  + ++ GG RY ++IV+DYSRK W Y LK K + F  FK W ++
Sbjct: 472  TTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTM 531

Query: 648  VGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDK 469
            V  QT  KVK LRTDNG+EFC+  F S+C  +GI RH TV HTPQQNGVAER+NRTI+ K
Sbjct: 532  VERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISK 591

Query: 468  VKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSA 289
             +CM+ + GL K F  EA  TA YLINRSP  AI+ KTP ++WSG P   S L+VFGC+A
Sbjct: 592  ARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTA 651

Query: 288  YAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTES 109
            YAH   GKLE R +KC+ LGYP+GVKGY+L     K  K++ SR VVF+E  M   K  +
Sbjct: 652  YAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETK--KVVISRYVVFHESVMLHDKPST 709

Query: 108  E-PKEQPQVKNVQIEV 64
              P E  +  +VQI++
Sbjct: 710  NIPVESQEKASVQIQI 725



 Score = 32.0 bits (71), Expect(2) = e-112
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQAL-------EPQNNAALEAEIDS---LHVITVSESE 1392
            C +C + GH    C+ L++K K           E +  AA+  +  S   L V     ++
Sbjct: 221  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 280

Query: 1391 MNREWILDSGCTFICVP 1341
             + +WILD+ CT+   P
Sbjct: 281  TSDQWILDTACTYHMCP 297


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  403 bits (1035), Expect(2) = e-112
 Identities = 218/435 (50%), Positives = 277/435 (63%), Gaps = 5/435 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGD+    V GIG + IKM DG IR+L +VR++PNLKR
Sbjct: 308  YHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 367

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGP-KKHGLYYLHGET---QVANSSSSF 1009
            +LISL  L+ +G+ +   +  LKV KGSL++MK   K   LY+L G T    VA  S S 
Sbjct: 368  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSL 427

Query: 1008 SVNEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAH 829
            S N D T LWH R+GHM   GL  LS + L     ++K+ FCE C+  K  R+ F    H
Sbjct: 428  S-NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTH 486

Query: 828  NVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSL 649
              +  L YVH DLWG  + ++ GG RY ++IVDDYSRK W Y LK K + F  FK W ++
Sbjct: 487  TTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTM 546

Query: 648  VGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDK 469
            V  QT  KVK LRTDNG+EFC+  F S+C  +GI RH TV HTPQQNGVAER+NR I+ K
Sbjct: 547  VERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISK 606

Query: 468  VKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSA 289
             +CM+ + GL K F  EA  TA YLINRSPS A N KTP E+WSG P   S L+VFGC+A
Sbjct: 607  ARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPANYSDLKVFGCTA 665

Query: 288  YAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTES 109
            YAH   GKLE RA+KC+ LGYP+ VKGY+L     K  K++ SR+VVF+E  M   K  +
Sbjct: 666  YAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETK--KVVISRNVVFHESIMLHDKPST 723

Query: 108  E-PKEQPQVKNVQIE 67
              P E  +  +VQ+E
Sbjct: 724  NVPVESQEKASVQVE 738



 Score = 32.0 bits (71), Expect(2) = e-112
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQAL-------EPQNNAALEAEIDS---LHVITVSESE 1392
            C +C + GH    C+ L++K K           E +  AA+  +  S   L V     ++
Sbjct: 236  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 1391 MNREWILDSGCTFICVP 1341
             + +WILD+ CT+   P
Sbjct: 296  TSDQWILDTACTYHMCP 312


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  403 bits (1035), Expect(2) = e-112
 Identities = 216/436 (49%), Positives = 277/436 (63%), Gaps = 5/436 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGD+    V GIG + IKM DG IR+L +VR++PNLKR
Sbjct: 125  YHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 184

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGP-KKHGLYYLHGET---QVANSSSSF 1009
            +LISL  L+ +G+ +   +  LKV KGSL++MK   K   LY+L G T    VA  S S 
Sbjct: 185  SLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSL 244

Query: 1008 SVNEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAH 829
            S N D T LWH R+GHM   GL  LS + L     + K+ FCE C+  K  R+ F    H
Sbjct: 245  S-NSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 303

Query: 828  NVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSL 649
              +  L YVH DLWG  + ++ GG RY ++IV+DYSRK W Y LK K + F  FK W ++
Sbjct: 304  TTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTM 363

Query: 648  VGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDK 469
            V  QT  KVK LRTDNG+EFC+  F S+C  +GI RH TV HTPQQNGVAER+NRTI+ K
Sbjct: 364  VERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISK 423

Query: 468  VKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSA 289
             +CM+ + GL K F  EA  TA YLINRSP  AI+ KTP ++WSG P   S L+VFGC+A
Sbjct: 424  ARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTA 483

Query: 288  YAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTES 109
            YAH   GKLE R +KC+ LGYP+GVKGY+L     K  K++ SR VVF+E  M   K  +
Sbjct: 484  YAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETK--KVVISRYVVFHESVMLHDKPST 541

Query: 108  E-PKEQPQVKNVQIEV 64
              P E  +  +VQI++
Sbjct: 542  NIPVESQEKASVQIQI 557



 Score = 32.0 bits (71), Expect(2) = e-112
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQAL-------EPQNNAALEAEIDS---LHVITVSESE 1392
            C +C + GH    C+ L++K K           E +  AA+  +  S   L V     ++
Sbjct: 53   CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 112

Query: 1391 MNREWILDSGCTFICVP 1341
             + +WILD+ CT+   P
Sbjct: 113  TSDQWILDTACTYHMCP 129


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  401 bits (1030), Expect(2) = e-112
 Identities = 217/435 (49%), Positives = 276/435 (63%), Gaps = 5/435 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGD+    V GIG + IKM DG IR+L +VR++PNLKR
Sbjct: 217  YHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKR 276

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHG-LYYLHGET---QVANSSSSF 1009
            +LISL  L+ +G+ +   +  LKV KGSL++MK   K+  LY+L G T    VA  S S 
Sbjct: 277  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSL 336

Query: 1008 SVNEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAH 829
            S N D T LWH R+GHM   GL  LS + L     + K+ FCE C+  K  R+ F    H
Sbjct: 337  S-NSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 395

Query: 828  NVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSL 649
              +  L YVH DLWG  + ++ GG RY ++IVDDYSRK W Y LK K + F  FK W ++
Sbjct: 396  TTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 455

Query: 648  VGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDK 469
            V  QT  KVK LRTDNG+E C+  F S+C  +GI RH TV HTPQQNGVAER+NRTI+ K
Sbjct: 456  VERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISK 515

Query: 468  VKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSA 289
             +CM+ +  L K F  EA  TA YLINRSPS AI+ KTP E+WSG P   S LRVFGC+A
Sbjct: 516  ARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTA 575

Query: 288  YAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTES 109
            YAH   GKLE R +KC+ LGY +GVKGY+L     K  K++ SR+VVF+E  M   K  +
Sbjct: 576  YAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKPST 633

Query: 108  E-PKEQPQVKNVQIE 67
              P E  +  +VQ+E
Sbjct: 634  NVPVESQEKVSVQVE 648



 Score = 32.7 bits (73), Expect(2) = e-112
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQAL-------EPQNNAALEAEIDS---LHVITVSESE 1392
            C +C + GH   +C+ L++K K           E +  AA+  +  S   L V     ++
Sbjct: 145  CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 204

Query: 1391 MNREWILDSGCTFICVP 1341
             + +WILD+ CT+   P
Sbjct: 205  TSDQWILDTACTYHMCP 221


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  410 bits (1053), Expect = e-111
 Identities = 220/435 (50%), Positives = 279/435 (64%), Gaps = 5/435 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGD+    V GIG + IKM DG IR+L +VR++PNLKR
Sbjct: 515  YHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 574

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGP-KKHGLYYLHGET---QVANSSSSF 1009
            +LISL  L+ +G+ +   +  LKV KGSL++MK   K   LY+L G T    VA  S S 
Sbjct: 575  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 634

Query: 1008 SVNEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAH 829
            S N D T LWH R+GHM   GL  LS + L     + K+ FCE C+  K  R+ F    H
Sbjct: 635  S-NSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 693

Query: 828  NVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSL 649
              +  L YVH DLWG  + ++ GG RY ++IVDDYSRK W Y LK K + F  FK W ++
Sbjct: 694  TTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 753

Query: 648  VGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDK 469
            V  QT  KVK LRTDNG+EFC+  F S+C  +GI RH TV HTPQQNGVAER+NRTI+ K
Sbjct: 754  VERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISK 813

Query: 468  VKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSA 289
             +C++ + GL K F  EA  TA YLINRSPS AI+ KTP E+WSG P   S LRVFGC+A
Sbjct: 814  ARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTA 873

Query: 288  YAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTES 109
            YAH   GKLE RA+KC+ LGYP+GVKGY+L     K  K++ SR+VVF+E  M   K  +
Sbjct: 874  YAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPST 931

Query: 108  E-PKEQPQVKNVQIE 67
              P E  +  +VQ+E
Sbjct: 932  NVPVESQEKASVQVE 946


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  410 bits (1053), Expect = e-111
 Identities = 220/435 (50%), Positives = 279/435 (64%), Gaps = 5/435 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HMCP R  F  Y+ ++   V MGD+    V GIG + IKM DG IR+L +VR++PNLKR
Sbjct: 308  YHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 367

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGP-KKHGLYYLHGET---QVANSSSSF 1009
            +LISL  L+ +G+ +   +  LKV KGSL++MK   K   LY+L G T    VA  S S 
Sbjct: 368  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 427

Query: 1008 SVNEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAH 829
            S N D T LWH R+GHM   GL  LS + L     + K+ FCE C+  K  R+ F    H
Sbjct: 428  S-NSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486

Query: 828  NVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSL 649
              +  L YVH DLWG  + ++ GG RY ++IVDDYSRK W Y LK K + F  FK W ++
Sbjct: 487  TTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTM 546

Query: 648  VGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDK 469
            V  QT  KVK LRTDNG+EFC+  F S+C  +GI RH TV HTPQQNGVAER+NRTI+ K
Sbjct: 547  VERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISK 606

Query: 468  VKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSA 289
             +C++ + GL K F  EA  TA YLINRSPS AI+ KTP E+WSG P   S LRVFGC+A
Sbjct: 607  ARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTA 666

Query: 288  YAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTES 109
            YAH   GKLE RA+KC+ LGYP+GVKGY+L     K  K++ SR+VVF+E  M   K  +
Sbjct: 667  YAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPST 724

Query: 108  E-PKEQPQVKNVQIE 67
              P E  +  +VQ+E
Sbjct: 725  NVPVESQEKASVQVE 739


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  391 bits (1005), Expect(2) = e-111
 Identities = 199/416 (47%), Positives = 264/416 (63%), Gaps = 7/416 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +HM   R  F  +K+     V +GD+    V+G G + IKM+DG++R+L N  YVP L++
Sbjct: 431  YHMAYSRDLFTTFKEWNG-SVKLGDDGELGVKGSGSVQIKMYDGLVRTL-NAWYVPGLRK 488

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNE 997
            NLIS+G L+  G+ F      L+V KG+L++MKG  +HG+Y L G + +  ++ S S+  
Sbjct: 489  NLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMGSSVLGTAAVSSSMAI 548

Query: 996  DR-------TELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGK 838
            D        TELWH R+GHM  KGL  L                           + F  
Sbjct: 549  DSVEKKDNCTELWHRRLGHMSEKGLSILE--------------------------VKFSM 582

Query: 837  GAHNVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNW 658
            G+H     L Y+H DLWG     +H G RY+++ +DD+SRK W+Y LK+KDE F  FK W
Sbjct: 583  GSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEW 642

Query: 657  LSLVGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTI 478
             ++V  +TG  VKTLRTDNGLEFCN +FD FC ++GI RHRTVRHTPQQNGVAER+N+T+
Sbjct: 643  KTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTL 702

Query: 477  MDKVKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFG 298
            + + +CM I  GL+K F  EA  TA YL+NRSPS+AI+FKTP+E+WSGKP   S L++FG
Sbjct: 703  VQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFG 762

Query: 297  CSAYAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM 130
            C AYAH  +GKLE RA+KC+ LGY TGVKGYRL    ++  K I SRDV F+E  M
Sbjct: 763  CPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM 818



 Score = 39.3 bits (90), Expect(2) = e-111
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLK---------NKQKAQALEPQNNAALEAEIDSLHVITVSESEM 1389
            C+HC + GHF+++C   +         N Q   A +         E +   V+TVS S  
Sbjct: 360  CFHCKEKGHFRKNCPQRQKGIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTVSTSSS 419

Query: 1388 NREWILDSGCTF 1353
               WILD+G ++
Sbjct: 420  AESWILDTGASY 431


>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103833265
            [Brassica rapa]
          Length = 3353

 Score =  376 bits (966), Expect(2) = e-110
 Identities = 192/410 (46%), Positives = 262/410 (63%), Gaps = 1/410 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            FH+ P +    + ++ +  KV M +N    V+GIG I I   DG    L +VRY+P++ R
Sbjct: 230  FHITPDKEVLFDLQEGDGSKVLMANNTQCEVKGIGKIRITNEDGTEVILRDVRYMPDMSR 289

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNE 997
            NLIS G+LE  G  ++  + T+   K    ++ G  ++GLYYL G      ++ S S  +
Sbjct: 290  NLISYGMLEKSGCNYQGGDFTITFYKEGQKVITGKYENGLYYLQGTVSRGEANISEST-D 348

Query: 996  DRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQR 817
             +T++WH R+GHM +K ++ L+ +    K +V K+ FCE CVL K H+LSF    H  + 
Sbjct: 349  SKTKVWHTRLGHMSSKNMELLAKEGFIPKTEVGKLEFCEGCVLGKKHKLSFPTAKHTTKG 408

Query: 816  PLVYVHVDLWGLEKH-STHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGN 640
             L YVH DLWG      + GG +YF+S +DD+S+K W+Y L++KDE F  FK W   V +
Sbjct: 409  ILEYVHSDLWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVES 468

Query: 639  QTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKC 460
             T  K+K LRTDNGLEFCN  FD  C   GI+RHRT  +TPQQNGV+ER+NRTIMDKV+ 
Sbjct: 469  HTEKKIKCLRTDNGLEFCNNRFDELCRTSGIKRHRTCNYTPQQNGVSERMNRTIMDKVRS 528

Query: 459  MVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAH 280
            M+   GL + F  EA+ TAVYLINR+P+S I+FK PEE+WSG  P LSHLR FGC+AY H
Sbjct: 529  MLAETGLGQEFWAEATSTAVYLINRTPNSTIDFKLPEEVWSGNRPDLSHLRRFGCTAYVH 588

Query: 279  QIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM 130
              + K + RA+K V +GYP GVKGYR  V + + +K   SR+VVF E E+
Sbjct: 589  VSQEKTKPRAIKGVFVGYPFGVKGYR--VWIPEDLKCTTSRNVVFREDEL 636



 Score =  376 bits (966), Expect(2) = e-110
 Identities = 192/410 (46%), Positives = 262/410 (63%), Gaps = 1/410 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            FH+ P +    + ++ +  KV M +N    V+GIG I I   DG    L +VRY+P++ R
Sbjct: 2305 FHITPDKEVLFDLQEGDGSKVLMANNTQCEVKGIGKIRITNEDGTEVILRDVRYMPDMSR 2364

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNE 997
            NLIS G+LE  G  ++  + T+   K    ++ G  ++GLYYL G      ++ S S  +
Sbjct: 2365 NLISYGMLEKSGCNYQGGDFTITFYKEGQKVITGKYENGLYYLQGTVSRGEANISEST-D 2423

Query: 996  DRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQR 817
             +T++WH R+GHM +K ++ L+ +    K +V K+ FCE CVL K H+LSF    H  + 
Sbjct: 2424 SKTKVWHTRLGHMSSKNMELLAKEGFIPKTEVGKLEFCEGCVLGKKHKLSFPTAKHTTKG 2483

Query: 816  PLVYVHVDLWGLEKH-STHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGN 640
             L YVH DLWG      + GG +YF+S +DD+S+K W+Y L++KDE F  FK W   V +
Sbjct: 2484 ILEYVHSDLWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVES 2543

Query: 639  QTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKC 460
             T  K+K LRTDNGLEFCN  FD  C   GI+RHRT  +TPQQNGV+ER+NRTIMDKV+ 
Sbjct: 2544 HTEKKIKCLRTDNGLEFCNNRFDELCRTSGIKRHRTCNYTPQQNGVSERMNRTIMDKVRS 2603

Query: 459  MVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAH 280
            M+   GL + F  EA+ TAVYLINR+P+S I+FK PEE+WSG  P LSHLR FGC+AY H
Sbjct: 2604 MLAETGLGQEFWAEATSTAVYLINRTPNSTIDFKLPEEVWSGNRPDLSHLRRFGCTAYVH 2663

Query: 279  QIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM 130
              + K + RA+K V +GYP GVKGYR  V + + +K   SR+VVF E E+
Sbjct: 2664 VSQEKTKPRAIKGVFVGYPFGVKGYR--VWIPEDLKCTTSRNVVFREDEL 2711



 Score = 53.9 bits (128), Expect(2) = e-110
 Identities = 29/67 (43%), Positives = 36/67 (53%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDSLHVITVSESEMNREWILDSG 1362
            C+ CGK GH+KRDC    NK      E   NA   +E+    V+T S  +   EW+LDSG
Sbjct: 173  CFSCGKEGHWKRDC---PNKGHMNGSEQAVNAV--SEMRQPLVLTASIHDSRNEWVLDSG 227

Query: 1361 CTFICVP 1341
            CTF   P
Sbjct: 228  CTFHITP 234



 Score = 53.9 bits (128), Expect(2) = e-110
 Identities = 29/67 (43%), Positives = 36/67 (53%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDSLHVITVSESEMNREWILDSG 1362
            C+ CGK GH+KRDC    NK      E   NA   +E+    V+T S  +   EW+LDSG
Sbjct: 2248 CFSCGKEGHWKRDC---PNKGHMNGSEQAVNAV--SEMRQPLVLTASIHDSRNEWVLDSG 2302

Query: 1361 CTFICVP 1341
            CTF   P
Sbjct: 2303 CTFHITP 2309



 Score =  122 bits (306), Expect = 8e-25
 Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 11/158 (6%)
 Frame = -3

Query: 570  SFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKCMVISYG-----------LAKGF* 424
            + C E G+Q      H   Q+ +A   NR   ++ K +   Y            L + F 
Sbjct: 1180 AICEELGLQTGSVKMHCDSQSALALAKNRVFHERTKHVANKYHFIRDIVAQETCLLQEFW 1239

Query: 423  REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAHQIEGKLEARAVK 244
             EA+ TAVYLINR+P+S I+FK PEE+WSG  P LSHLR FGC+AY H  + K + RA+K
Sbjct: 1240 AEATSTAVYLINRTPNSTIDFKLPEEVWSGNRPDLSHLRRFGCTAYVHVSQEKTKPRAIK 1299

Query: 243  CVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM 130
             V +GYP GVKGYR  V + + +K   SR+VVF E E+
Sbjct: 1300 GVFVGYPFGVKGYR--VWIPEDLKCTTSRNVVFREDEL 1335


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  382 bits (980), Expect(2) = e-110
 Identities = 200/438 (45%), Positives = 273/438 (62%), Gaps = 3/438 (0%)
 Frame = -3

Query: 1353 HMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKRN 1174
            HM   R  F+++++     + +GD++S   +G G I I  H G I+ L NV+YVP+L+RN
Sbjct: 317  HMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRN 376

Query: 1173 LISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNED 994
            LIS G L+  G+  +     ++  K +   ++G   +GLY L G T V +   +   ++ 
Sbjct: 377  LISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGST-VMSELCNAETDKV 435

Query: 993  RTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQRP 814
            +T LWH+R+GHM    LK L+ + L  + ++ ++ FCE CV+ KS ++SF  G H  +  
Sbjct: 436  KTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDA 495

Query: 813  LVYVHVDLWGLEKHSTH-GGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGNQ 637
            L YVH DLWG    +    G +YFLSI+DD +RK W+Y LKSKDETF  F  W SLV NQ
Sbjct: 496  LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQ 555

Query: 636  TGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKCM 457
               KVK LRTDNGLEFCN  FDS+C E GI+RHRT  +TPQQNGVAER+NRTIM+KV+C+
Sbjct: 556  VNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCL 615

Query: 456  VISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAHQ 277
            +   G+ + F  EA+ TA YLINRSP+SAIN   PEE+W  + P   HLR FG  AY HQ
Sbjct: 616  LNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQ 675

Query: 276  IEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNE--MEMPCLKTESEP 103
             +GKL+ RA+K   LGYP G KGY++ +L E+  K + SR+VVF E  +       E + 
Sbjct: 676  DQGKLKPRALKGFFLGYPAGTKGYKVWLLEEE--KCVISRNVVFQESVVYRDLKVKEDDT 733

Query: 102  KEQPQVKNVQIEVETHKF 49
                Q +    EVE +KF
Sbjct: 734  DNLNQKETTSSEVEQNKF 751



 Score = 48.5 bits (114), Expect(2) = e-110
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAE-IDSLHVITVSESEMNREWILDS 1365
            C++C K GH K+DCY  K K ++   E Q  A +  E +     ++V+E  +   WILDS
Sbjct: 256  CWYCKKEGHVKKDCYSRKKKMES---EGQGEAGVITEKLVFSEALSVNEQMVKDLWILDS 312

Query: 1364 GCT 1356
            GCT
Sbjct: 313  GCT 315


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  393 bits (1009), Expect(2) = e-110
 Identities = 201/434 (46%), Positives = 281/434 (64%), Gaps = 2/434 (0%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKR 1177
            +H+CP R  F  Y+Q++   + M +++   V G G I I+ HDG   +L  VR+VP + +
Sbjct: 287  YHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTK 346

Query: 1176 NLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQV--ANSSSSFSV 1003
            NLISL +L+ +G  +  ++  L+V KGS +I+KG  +  LY+L G T    A+ +SS   
Sbjct: 347  NLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFH 406

Query: 1002 NEDRTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNV 823
             +D T+LWH R+GHMG +G++ LS + L    +V  + FCE CV  K HR  F K  H  
Sbjct: 407  QKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRT 466

Query: 822  QRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVG 643
            +  L Y+H D WG  +  + GG R+F+SI+DDYSR  W+Y++K K E F+ FK W  L+ 
Sbjct: 467  KGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILME 526

Query: 642  NQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVK 463
            NQTG K+K LRTDNGLEFC  EFD FC ++GI RHRTVR+TPQQNGVAER+N+T++++ +
Sbjct: 527  NQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERAR 586

Query: 462  CMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYA 283
            CM+ + GL + F  EA  TA YLINR P + I  KTP E+WSGK    S+L+ FGC+AY 
Sbjct: 587  CMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYY 646

Query: 282  HQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEMPCLKTESEP 103
            H  EGKLE RA K V +GY  GVKG+R+    EK  ++I SR+VVF+  E P L+T  +P
Sbjct: 647  HVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVFD--ESPLLRTIVKP 702

Query: 102  KEQPQVKNVQIEVE 61
                +  ++  +VE
Sbjct: 703  TTTSETGSLDKQVE 716



 Score = 34.3 bits (77), Expect(2) = e-110
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDS-----LHVITVSESEMNREW 1377
            C +C + GH+K DC     K+K Q+ E Q+ +A  AE D+     + ++    +  +  W
Sbjct: 225  CNYCKEKGHWKFDC----PKKKKQS-EKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVW 279

Query: 1376 ILDSGCTFICVP 1341
            +LDSG ++   P
Sbjct: 280  VLDSGASYHICP 291


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  382 bits (982), Expect(2) = e-109
 Identities = 200/439 (45%), Positives = 279/439 (63%), Gaps = 7/439 (1%)
 Frame = -3

Query: 1353 HMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKRN 1174
            HM   R  F ++++     + +GD++S   +G G I I+ H G I  L NV+YVP L+RN
Sbjct: 327  HMSARRDWFCSFREDGGPTILLGDDHSVKSQGQGSIKIETHGGTIIGLENVKYVPELRRN 386

Query: 1173 LISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNED 994
            LIS G L+  G+  +  +  ++  K     ++G   +GLY L G T V + +     ++ 
Sbjct: 387  LISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGELVNGLYILDGNT-VLSETCVAEGSKG 445

Query: 993  RTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQRP 814
            +TELWH+R+GH+G   +K L+ + L  K+++  + FCE CV+ K+ ++SF  G HN +  
Sbjct: 446  KTELWHSRLGHIGLNNMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDV 505

Query: 813  LVYVHVDLWGLEKHSTH-GGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGNQ 637
            L YVH DLWG    +    GN+YFLSI+DD +RK W+Y L+SKDETF  F  W  LV NQ
Sbjct: 506  LRYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQ 565

Query: 636  TGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKCM 457
               KVK LRTDNGLEFCNL+FD++C E GI+RH+T  +TPQQNGVAER+NRTIM+KV+CM
Sbjct: 566  QNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCM 625

Query: 456  VISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAHQ 277
            +   GL + F  EA+ TA YLINRSP+SAI+   PEELW  K P   HLR FG  AY H 
Sbjct: 626  LNESGLGEEFWAEAAATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHI 685

Query: 276  IEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM--PCLK----T 115
             +GKL+ RA+K + +GYP G KGY++ +L E   K + SR+V+F+E  +    +K     
Sbjct: 686  DQGKLKPRALKGIFIGYPAGTKGYKIWLLEEH--KCVISRNVLFHEESVYKDTMKKERVV 743

Query: 114  ESEPKEQPQVKNVQIEVET 58
            ESE +     K+  I+V+T
Sbjct: 744  ESEAEPASHSKSTLIKVKT 762



 Score = 41.2 bits (95), Expect(2) = e-109
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDSLHVITVSESEMNREWILDSG 1362
            C++C K GH K+D +    K+K ++  P     +  ++     ++V++  +   W+LDSG
Sbjct: 266  CWYCKKEGHVKKDYF--ARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSG 323

Query: 1361 CT 1356
            CT
Sbjct: 324  CT 325


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  394 bits (1013), Expect(2) = e-108
 Identities = 209/437 (47%), Positives = 275/437 (62%), Gaps = 7/437 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVF-MGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLK 1180
            FH+C  R+ F +YK ++   V  MGD+N   + GIG + IK  DG+ R+L NVRY+P + 
Sbjct: 298  FHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMS 357

Query: 1179 RNLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHG-LYYLHGETQVANSSSSFSV 1003
            RNLISL  L+ EG+ +   +  LKV KGSL+ +KG      LY L G T   + S++ +V
Sbjct: 358  RNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAV 417

Query: 1002 NED---RTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGA 832
              D   +T LWH R+GHM + G+  L  + L      +K+ FCE C+  K  R+ F    
Sbjct: 418  TNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSV 477

Query: 831  HNVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLS 652
            H  +  L YVH DLWG  K  + GG RY L+I+DDYSRK W Y LK KD+TF  FKNW  
Sbjct: 478  HTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKV 537

Query: 651  LVGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMD 472
            ++  QT  KVK LRTDNG EFC+  F+ +C ++GI RH T+ HTPQQNGVAER+NRTI+ 
Sbjct: 538  MIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIIS 597

Query: 471  KVKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCS 292
            + +CM+    + K F  EA+ TA YLINRSPS  +N KTP E+WSG P   S L+VFGC+
Sbjct: 598  RARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCT 657

Query: 291  AYAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM--PCLK 118
            AYAH   GKLE RAVKC+ LGY +GVKGY+L     +  K   SR VVFNE  M    L 
Sbjct: 658  AYAHVDNGKLEPRAVKCLFLGYGSGVKGYKL--WNPETGKTFMSRSVVFNESVMFTNSLP 715

Query: 117  TESEPKEQPQVKNVQIE 67
            +E  P+++ Q  ++Q+E
Sbjct: 716  SEHVPEKELQRMHMQVE 732



 Score = 27.3 bits (59), Expect(2) = e-108
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDS----LHVITVSESEMNREWI 1374
            C +C    H   +C  ++ K++    + + + A  A  D       V+       + EWI
Sbjct: 232  CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWI 291

Query: 1373 LDSGCTF-IC 1347
            LDS C+F IC
Sbjct: 292  LDSACSFHIC 301


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  394 bits (1012), Expect(2) = e-108
 Identities = 208/437 (47%), Positives = 275/437 (62%), Gaps = 7/437 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVF-MGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLK 1180
            FH+C  R+ F +YK ++   V  MGD+N   + GIG + IK  DG+ R+L NVRY+P + 
Sbjct: 298  FHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMS 357

Query: 1179 RNLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHG-LYYLHGETQVANSSSSFSV 1003
            RNLISL  L+ EG+ +   +  LKV KGSL+ +KG      LY L G T   + S++ ++
Sbjct: 358  RNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAI 417

Query: 1002 NED---RTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGA 832
              D   +T LWH R+GHM + G+  L  + L      +K+ FCE C+  K  R+ F    
Sbjct: 418  TNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSV 477

Query: 831  HNVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLS 652
            H  +  L YVH DLWG  K  + GG RY L+I+DDYSRK W Y LK KD+TF  FKNW  
Sbjct: 478  HTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKV 537

Query: 651  LVGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMD 472
            ++  QT  KVK LRTDNG EFC+  F+ +C ++GI RH T+ HTPQQNGVAER+NRTI+ 
Sbjct: 538  MIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIIS 597

Query: 471  KVKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCS 292
            + +CM+    + K F  EA+ TA YLINRSPS  +N KTP E+WSG P   S L+VFGC+
Sbjct: 598  RARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCT 657

Query: 291  AYAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM--PCLK 118
            AYAH   GKLE RAVKC+ LGY +GVKGY+L     +  K   SR VVFNE  M    L 
Sbjct: 658  AYAHVDNGKLEPRAVKCLFLGYGSGVKGYKL--WNPETGKTFMSRSVVFNESVMFTNSLP 715

Query: 117  TESEPKEQPQVKNVQIE 67
            +E  P+++ Q  ++Q+E
Sbjct: 716  SEHVPEKELQRMHMQVE 732



 Score = 27.3 bits (59), Expect(2) = e-108
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDS----LHVITVSESEMNREWI 1374
            C +C    H   +C  ++ K++    + + + A  A  D       V+       + EWI
Sbjct: 232  CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWI 291

Query: 1373 LDSGCTF-IC 1347
            LDS C+F IC
Sbjct: 292  LDSACSFHIC 301


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  394 bits (1012), Expect(2) = e-108
 Identities = 208/437 (47%), Positives = 275/437 (62%), Gaps = 7/437 (1%)
 Frame = -3

Query: 1356 FHMCPVRS*FVNYKQIEPRKVF-MGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLK 1180
            FH+C  R+ F +YK ++   V  MGD+N   + GIG + IK  DG+ R+L NVRY+P + 
Sbjct: 298  FHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMS 357

Query: 1179 RNLISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHG-LYYLHGETQVANSSSSFSV 1003
            RNLISL  L+ EG+ +   +  LKV KGSL+ +KG      LY L G T   + S++ +V
Sbjct: 358  RNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAV 417

Query: 1002 NED---RTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGA 832
              D   +T LWH R+GHM + G+  L  + L      +K+ FCE C+  K  R+ F    
Sbjct: 418  TNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSV 477

Query: 831  HNVQRPLVYVHVDLWGLEKHSTHGGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLS 652
            H  +  L YVH DLWG  K  + GG RY L+++DDYSRK W Y LK KD+TF  FKNW  
Sbjct: 478  HTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKV 537

Query: 651  LVGNQTGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMD 472
            ++  QT  KVK LRTDNG EFC+  F+ +C ++GI RH T+ HTPQQNGVAER+NRTI+ 
Sbjct: 538  MIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIIS 597

Query: 471  KVKCMVISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCS 292
            + +CM+    + K F  EA+ TA YLINRSPS  +N KTP E+WSG P   S L+VFGC+
Sbjct: 598  RARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCT 657

Query: 291  AYAHQIEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNEMEM--PCLK 118
            AYAH   GKLE RAVKC+ LGY +GVKGY+L     +  K   SR VVFNE  M    L 
Sbjct: 658  AYAHVDNGKLEPRAVKCLFLGYGSGVKGYKL--WNPETGKTFMSRSVVFNESVMFTNSLP 715

Query: 117  TESEPKEQPQVKNVQIE 67
            +E  P+++ Q  ++Q+E
Sbjct: 716  SEHVPEKELQRMHMQVE 732



 Score = 27.3 bits (59), Expect(2) = e-108
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDS----LHVITVSESEMNREWI 1374
            C +C    H   +C  ++ K++    + + + A  A  D       V+       + EWI
Sbjct: 232  CVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWI 291

Query: 1373 LDSGCTF-IC 1347
            LDS C+F IC
Sbjct: 292  LDSACSFHIC 301


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  374 bits (960), Expect(2) = e-107
 Identities = 188/406 (46%), Positives = 265/406 (65%), Gaps = 1/406 (0%)
 Frame = -3

Query: 1353 HMCPVRS*FVNYKQIEPRKVFMGDNNSQVVEGIGDIPIKMHDGIIRSLYNVRYVPNLKRN 1174
            HM   +  F N+++     + +GD++S   +G G I I  H G I  L NV+YVP L+RN
Sbjct: 227  HMSARKDWFCNFRKDGGTTILLGDDHSVKSQGQGSIKIDTHGGTITVLENVKYVPELRRN 286

Query: 1173 LISLGVLEDEGHMFKSENCTLKVIKGSLIIMKGPKKHGLYYLHGETQVANSSSSFSVNED 994
            LIS G L+  G+  +  +  ++  K     ++G   +GLY L G T + + +     ++ 
Sbjct: 287  LISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGEIVNGLYILDGNT-ILSETCVAEGSKG 345

Query: 993  RTELWHNRIGHMGNKGLKFLSDQQLFGKDQVTKMTFCETCVLSKSHRLSFGKGAHNVQRP 814
            +TELWH+R+GHMG   +K L+ + L  K+++ ++ FCE CV+ K+ ++SF  G HN +  
Sbjct: 346  KTELWHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKHNSEYV 405

Query: 813  LVYVHVDLWGLEKHSTH-GGNRYFLSIVDDYSRKAWMYLLKSKDETFRNFKNWLSLVGNQ 637
            L YVH DLWG    +    GN+YFLSI+DD +RK W+Y L+SKDETF  F     LV NQ
Sbjct: 406  LSYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQ 465

Query: 636  TGSKVKTLRTDNGLEFCNLEFDSFCVEKGIQRHRTVRHTPQQNGVAERLNRTIMDKVKCM 457
               KVK LRTDNGLEFCNL+FD++C + GI+RH T  +TPQQNGVA+R+NRTIM+KV+CM
Sbjct: 466  QNKKVKCLRTDNGLEFCNLKFDAYCKDHGIERHMTCTYTPQQNGVADRMNRTIMEKVRCM 525

Query: 456  VISYGLAKGF*REASCTAVYLINRSPSSAINFKTPEELWSGKPPKLSHLRVFGCSAYAHQ 277
            +   GL + F  EA+ TA YLI+RSP+SAI+   PEELW  K P   HLR FG  AY H 
Sbjct: 526  LNESGLGEEFWAEAAATAAYLISRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHI 585

Query: 276  IEGKLEARAVKCVLLGYPTGVKGYRL*VLVEKCIKIINSRDVVFNE 139
             +GKL+ RA+K + +GYP+G KGY++ +L E+  K + SR+V+F+E
Sbjct: 586  DQGKLKPRALKGIFIGYPSGTKGYKIWLLEEQ--KCVISRNVLFHE 629



 Score = 45.4 bits (106), Expect(2) = e-107
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -1

Query: 1541 CYHCGKLGHFKRDCYDLKNKQKAQALEPQNNAALEAEIDSLHVITVSESEMNREWILDSG 1362
            C++C K GH K+DC+    K+K ++  P     +  ++     ++V++  +   W+LDSG
Sbjct: 166  CWYCKKEGHVKKDCF--ARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSG 223

Query: 1361 CT 1356
            CT
Sbjct: 224  CT 225