BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00006717
         (4240 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011081567.1| PREDICTED: RNA-dependent RNA polymerase 6 [S...  1942   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1837   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1833   0.0  
ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [N...  1829   0.0  
ref|XP_012857917.1| PREDICTED: RNA-dependent RNA polymerase 6 [E...  1828   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1826   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1823   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1821   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1820   0.0  
gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]  1814   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1788   0.0  
ref|XP_010319120.1| PREDICTED: RNA-dependent RNA polymerase 6 is...  1774   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1768   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1748   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1731   0.0  
ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1728   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1728   0.0  
ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1719   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...  1719   0.0  
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1719   0.0  

>ref|XP_011081567.1| PREDICTED: RNA-dependent RNA polymerase 6 [Sesamum indicum]
          Length = 1205

 Score = 1942 bits (5031), Expect = 0.0
 Identities = 958/1203 (79%), Positives = 1050/1203 (87%), Gaps = 5/1203 (0%)
 Frame = -2

Query: 4059 TMASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYE 3880
            TM S+ G+  +V+TQISVGG E++VTAKMLLDYFEDNIGLVWRCRLKTSSTPPES PNYE
Sbjct: 4    TMGSEIGDNDLVVTQISVGGLENYVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESNPNYE 63

Query: 3879 VDTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
            +D ESVQRK +Y K++PHAFVHFA++ S  +ALDAA RGELILG+  LKVSLGP+NP+RM
Sbjct: 64   IDAESVQRKTDYVKIEPHAFVHFAVAHSAKAALDAAARGELILGRKPLKVSLGPQNPYRM 123

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            NERRRT  PYKLSDV +EIG+MRSRD+F+VGWRGPR GVDFLVDPFN TCKL FT+ TAF
Sbjct: 124  NERRRTTTPYKLSDVLIEIGVMRSRDEFLVGWRGPRTGVDFLVDPFNGTCKLHFTRNTAF 183

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            SFKGEA+  VIKCNFKIEF+PREINEI QY+DFSS+I+LLQLASSPLVYYRTADDDIEES
Sbjct: 184  SFKGEARSAVIKCNFKIEFLPREINEINQYRDFSSLIVLLQLASSPLVYYRTADDDIEES 243

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNT 3160
            VPFDLLDDDDPWIRTTDFTPSGAIGRCN YR+S RPRNGPS  KALEYL+K RVPVL+ +
Sbjct: 244  VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISARPRNGPSLFKALEYLRKLRVPVLDES 303

Query: 3159 P--ELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLL 2986
            P   LRV+DE           FC+QYKEGI+FKI+FLVNAVMH+GIINQHQMS++FF LL
Sbjct: 304  PGRTLRVQDEPDFGMPMSDPFFCLQYKEGISFKIMFLVNAVMHKGIINQHQMSEKFFDLL 363

Query: 2985 RIQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLII 2806
            R QPE++N+VALKH+ S KRP YDA K L FVQKWLL NPKLLE PRE+DD+VEVRRLII
Sbjct: 364  RSQPEELNIVALKHMCSYKRPVYDAIKALDFVQKWLLNNPKLLERPREMDDVVEVRRLII 423

Query: 2805 TPAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITS 2626
            TP+KAYCLPPEVELSNRVLR YKN+ADRFLRVTFMDE MQTLNKNVL YYAS IVRDITS
Sbjct: 424  TPSKAYCLPPEVELSNRVLRNYKNIADRFLRVTFMDEAMQTLNKNVLMYYASPIVRDITS 483

Query: 2625 NSNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSW 2446
            NSNPQRT+MFKRVKDIL NGFYLCGRKY+FLAFSANQLRDRSAWFFAEDK   V  IKSW
Sbjct: 484  NSNPQRTNMFKRVKDILVNGFYLCGRKYTFLAFSANQLRDRSAWFFAEDKNTGVANIKSW 543

Query: 2445 MGRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLA 2266
            MG+FT RNVAKCAARMGQCFSSTYAT+EVP T+V+S+ PD++RN Y FSDGIG IS DLA
Sbjct: 544  MGKFTQRNVAKCAARMGQCFSSTYATIEVPLTKVNSQFPDVERNGYVFSDGIGMISADLA 603

Query: 2265 MRVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICS 2086
            + VAEKLQL  NPPCAYQIRYAG KGVVA WPAK+DG  LYLR SMKKFES+H  LEICS
Sbjct: 604  IEVAEKLQLGSNPPCAYQIRYAGYKGVVARWPAKDDGVRLYLRRSMKKFESNHKTLEICS 663

Query: 2085 WTRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQG 1906
            WTRFQPGFLNRQI+TLLSAL+V+DDIFW+MQETMVSRLD ML D+D AFDVLTASC +QG
Sbjct: 664  WTRFQPGFLNRQIVTLLSALEVQDDIFWRMQETMVSRLDWMLEDSDTAFDVLTASCTDQG 723

Query: 1905 NTAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRER---ARIFVPSGRWLMGCLDELGI 1735
            NTAA+MLSAGF+PQ+EPHL GMLTSIRAAQLGDL ER   ARIFVP GRWLMGCLDELG 
Sbjct: 724  NTAALMLSAGFRPQTEPHLRGMLTSIRAAQLGDLSERATIARIFVPLGRWLMGCLDELGK 783

Query: 1734 LRQGQCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVD 1555
            L  GQCF+QVSNPS+EDCFVKHGS+FSET K LQV+ GLVAIAKNPCLHPGDVRILEAVD
Sbjct: 784  LEHGQCFIQVSNPSIEDCFVKHGSQFSETKKKLQVVTGLVAIAKNPCLHPGDVRILEAVD 843

Query: 1554 IPGLNHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGE 1375
            +P L+HLYDCLVFPQ GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW PMEYAPGE
Sbjct: 844  VPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWTPMEYAPGE 903

Query: 1374 AKSLPRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAV 1195
             K LPR+VKHSDII+FF+KNMVNESLGAICNAHVVHADLSE GALDEKCIKLAELAATAV
Sbjct: 904  VKQLPREVKHSDIIDFFTKNMVNESLGAICNAHVVHADLSEYGALDEKCIKLAELAATAV 963

Query: 1194 DFPKTGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVA 1015
            DFPKTGKIV MPAELKPK YPDFMGKEEFQSY S KILGKLYRKIKDAYD D+EAS    
Sbjct: 964  DFPKTGKIVNMPAELKPKTYPDFMGKEEFQSYNSSKILGKLYRKIKDAYDRDHEASREHT 1023

Query: 1014 FASKEIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPK 835
            FAS +I YD+DLE+ GS  FI DAWNCKC+YDGQL  LLGQYKVNREEEVVTGHIWSMPK
Sbjct: 1024 FASDDIIYDQDLEVTGSTGFIGDAWNCKCSYDGQLIGLLGQYKVNREEEVVTGHIWSMPK 1083

Query: 834  YSGKKRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTY 655
            YS KK+GELKERLKHAY+TL+K+FRKVFE            DEKN++YERKASAWYQVTY
Sbjct: 1084 YSSKKQGELKERLKHAYSTLRKEFRKVFE-CMGPEFDQLWDDEKNIMYERKASAWYQVTY 1142

Query: 654  HRRWVQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLA 475
               WV+KS EL   D  G++ MLSFAWIAADYLARIK + R  +N  S KPI+ LG YLA
Sbjct: 1143 KDSWVKKSKELHAVDDAGKSVMLSFAWIAADYLARIKIKRRMMENSISTKPIDSLGRYLA 1202

Query: 474  DKI 466
            DKI
Sbjct: 1203 DKI 1205


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1837 bits (4757), Expect = 0.0
 Identities = 900/1199 (75%), Positives = 1014/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF++ V AKML +Y E+ +G VWRCRLK SSTPP+SYP Y++
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E VQR + YEKV PHAFVHFA S S   AL AAG  EL+LGK  L VSLGPENP+R+N
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P+K SDV VE+G++ S+ DFVVGWRGPR GVDFLVDPFN TCK++FTK+T FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEA+H +IKCNFKIEF+ REINEIK+ KDF S++ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y   HRVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRVRDE           FC Q  EGI+FK+LFL NAV+H+GI+NQHQM +EFF+LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
               E+VNL ALKH++S K P  DA + L  +QKWLLKNPKLLE   ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP++EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L+VNPP AYQIRYAGCKGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M++ LD+MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAA+MLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CFVKHGSKFS+  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDEN+IPPSK+SW+PM Y P E K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+    K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  LEI GS  FI DAWN KC+YDGQLN LLGQYKVNREEEVVTGHIWSMPKYS K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWYQVTYH  W
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFE-RMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD V  T MLSFAWIAADYLARIK R RG    +S KPIN LG YLADKI
Sbjct: 1139 VARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1833 bits (4748), Expect = 0.0
 Identities = 897/1199 (74%), Positives = 1017/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF++ V AKML +Y E+ +G VWRCRLK SSTPP+SYP ++V
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E VQR  +YEKV PHAFVHFA S S   AL AAG  ELILGK  L VSLGPENP+R+N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P+K SDV +E+G++ S+DDFVVGWRGPR GVDFLVDPFN  CK++FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEA+H +IKCNFKIEF+ REINEIK+ KDF+S++ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y   HRVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRVRDE           FC Q  EGI+FK++FLVNAV+H+GI+NQHQM++EFF+LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
               E+VNL ALKH++S K P  DA + L  ++KWLLKNPKLLE   ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP++EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L+VNPP AYQIRYAGCKGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M+S LD+MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAAIMLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CF+KHG KFS+  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+PGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E K +
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  LEIPGS  FI DAWN KC+YDGQL+ LLGQYKVNREEEVVTGHIWSMPKYS K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWYQVTY+  W
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFE-RMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD V  T MLSFAWIAADYLARIK R RG +  +S KPIN LG YL D I
Sbjct: 1139 VARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana sylvestris]
          Length = 1197

 Score = 1829 bits (4737), Expect = 0.0
 Identities = 893/1199 (74%), Positives = 1016/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF++ V AKML +Y E+ +G VWRCRLK S+TPP+SYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E V R  +YEKV PHAFVHFA S S   AL AAG  ELILGK  L VSLGPENP+R+N
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P++ SDV VE+G++ S+DDFVVGWRGPR GVDF VDPFN  C+++FTK+TAFS
Sbjct: 121  QRRRTTMPFRFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACRILFTKDTAFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEA+H +IKCNFKIEF+ REINEIK+ KDF+S++ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y   HRVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRVRDE           FC Q  EGI+FK++FLVNAV+H+GI+NQHQM++EFF+LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
             + E+VNL ALKH++S K P  DA + L  +QKWL+KNPKLLE   ELDDIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLMKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+ EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L+VNPP AYQIRYAGCKGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M+S LD+MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAAIMLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CF+KHG KFS+  +NLQV+KGLV IAKNPCLHPGDVRILEAVD+PGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E K L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  LEIPGS  FI DAWN KC+YDGQL+ LLGQYKVNREEEVVTGHIWSMPKYS K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWYQVTY+  W
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFE-RMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD +  T MLSFAWIAADYLARIK R RG +  +S KPIN LG YL DKI
Sbjct: 1139 VARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>ref|XP_012857917.1| PREDICTED: RNA-dependent RNA polymerase 6 [Erythranthe guttatus]
            gi|604300451|gb|EYU20269.1| hypothetical protein
            MIMGU_mgv1a000386mg [Erythranthe guttata]
          Length = 1196

 Score = 1828 bits (4736), Expect = 0.0
 Identities = 903/1200 (75%), Positives = 1017/1200 (84%), Gaps = 3/1200 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+  ++ M++TQISVGG    VTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYE+
Sbjct: 1    MGSEISDREMIVTQISVGGLGSNVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D +S ++  +Y K++P+AFVHF ++ S   A++AA RG+L     LLKVSLGP+NP+R++
Sbjct: 61   DIDSAKQSDDYVKIQPYAFVHFVVAESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLS 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            ERRRT  PYKLSD  VEIG +RSR++ VVGWRGPR+GVDFLVDPF+ TCKL   ++TAF 
Sbjct: 121  ERRRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFC 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            FKGEA+  +IKC+F+IEF PREI EIK Y+DFSS+IIL+QLASSPL+YYRTADDDIEE  
Sbjct: 181  FKGEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPA 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNTP 3157
              DLLDDDDPWIRTTDFT  GA GRCN YR+SVRP NGP   KAL+YL+K RVPVL+   
Sbjct: 241  TCDLLDDDDPWIRTTDFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERT 300

Query: 3156 ELR--VRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
              R  V+DE            CIQYKEGI+FK++FL+NAVMH+GIINQHQ+S++   + R
Sbjct: 301  RQRLVVQDEPDFGMPVLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFR 360

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
             QPE VN VALKH+ S KRP YDA K +  VQ+WLLKNPKLLE PR +DDIVEVRRLIIT
Sbjct: 361  RQPEDVNTVALKHMCSYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIIT 420

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            PAKAYCLPPEVELSNRVLR+YK VADRFLRVTF DE M TLNKN LTYY   +VR ITS+
Sbjct: 421  PAKAYCLPPEVELSNRVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSS 480

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++FKR+KDIL +GFYLCGRKYSFLAFS+NQLRDRSAWFFAEDK I V  IK+WM
Sbjct: 481  SNPQRTTIFKRIKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWM 540

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRFTNRNVAKCAARMGQCFSSTYATVEVP+ +V+SKLPDI+RN+Y FSDGIG +S DLAM
Sbjct: 541  GRFTNRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAM 600

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKLQLT N P AYQIRYAG KGVVACWPA++DG  L LR SMKKF+S+HT+LEICSW
Sbjct: 601  EVAEKLQLTTNLPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSW 660

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQIITLLSAL+V D+IFW+MQETM+SRL++ML DTD AFDVLT+SC +QGN
Sbjct: 661  TRFQPGFLNRQIITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGN 720

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAAIMLSAGFKPQ+EPHL GMLTSIR AQLGDLRERARIFVPSGRWLMGCLDELG+L  G
Sbjct: 721  TAAIMLSAGFKPQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHG 780

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVSNPSLEDCFVKHGS+FS   K L+VIKGLVAIAKNPCLHPGDVRILEAVD PGL
Sbjct: 781  QCFIQVSNPSLEDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGL 840

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ G+RPHTNEASGSDLDGDLYFVTWDENL+PPSKRSW PMEYAPGE K L
Sbjct: 841  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQL 900

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
            PR+VKH+DIIEFF+KNMVNESLGAICNAHVVHAD SE GALDEKCIKLAELAA AVDFPK
Sbjct: 901  PREVKHTDIIEFFTKNMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPK 960

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGKIVTMPAELKPKLYPDFMGK+EFQ+Y+S KILGKLYRKIKD+ + DYE SS     S 
Sbjct: 961  TGKIVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKIKDS-NYDYEESS--ENTSV 1017

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
             I YD++LEI GS +FI DAWNCKC+YDGQL  LLGQYKVN EEEVVTGHIWSMPKYS K
Sbjct: 1018 NIAYDQELEIAGSESFITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSSK 1077

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAY+TL+KDFRKVFE            DEKN ++ERKASAWYQVTY+  W
Sbjct: 1078 KQGELKERLKHAYSTLRKDFRKVFE-SMDAEFDQLSDDEKNTMFERKASAWYQVTYNESW 1136

Query: 642  VQKSLELQ-VPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V+KS +LQ V D VG+T MLSFAWIAADYLARIK R R  +N  S KPI+ LG YLADKI
Sbjct: 1137 VKKSKDLQVVDDEVGKTVMLSFAWIAADYLARIKIRRRRMENAISMKPIDSLGRYLADKI 1196


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1826 bits (4731), Expect = 0.0
 Identities = 894/1199 (74%), Positives = 1013/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF++ V AKML +Y E+ +G VWRCRLK S+TPP+SYP Y+V
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D   V R  +YEKV PHAFVHFA S S   AL AAG   LILGK  L VSLGPENP+R+N
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P+K SDV VE+G++ S+DDFVVGWRGPR GVDF VDPFN  CK++FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEAKH +IKCNFKIEF+ REINEIK++KDF+S++ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y   HRVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRVRDE           FC Q  EGI+FK++FLVNAV+H+GI+NQHQM++EFF+LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
               E+VNL ALKH++S K P  DA + L  +QKWLLKNPKLLE   ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP++EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L+VNPP AYQIRYAGCKGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M+S L++MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAAIMLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CF+KHG KFS+  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+PGL
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E K L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  LEIPGS  F+ DAWNCKC+YDGQL+ LLGQYKVNREEEVVTGHIWSMPKYS K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYN L+K+FR VFE            DEKN +YERKASAWYQVTY+  W
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFE-RMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD V  T MLSFAWIAADYLARI  R RG +  +S KPIN LG YL D I
Sbjct: 1139 VARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1823 bits (4723), Expect = 0.0
 Identities = 895/1199 (74%), Positives = 1013/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQIS GGF++ V AKML +Y E+ +G VWRCRLK SSTPP+SYP Y++
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E VQR + YEKV PHAFVHFA S S   AL AAG  ELILGK  L VSLGPENP+R+N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P+K SDV VE+G++ S+DDFVVGWRGPR GVDF VDPFN TCK++FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEA+H +IKCNFKIEF+ REINEIK+ KDF+S++ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y   HRVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRV+DE           FC Q  EGI+FK++FLVNAV+H+GI+NQHQM++EFF+LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
             + E+VN  ALKH++S K P  DA + L  +QKWLLKNPKLL+   ELDDIVEVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+ EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L+VNPP AYQIRYAGCKGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M+S LD+MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAAIMLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CFVKHG KFS+  +NLQV+KGLV IAKNPCLHPGDVRILEAVD+P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+    K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  LEI GS  FI DAWN KC+YDGQL+ LLGQYKVNREEEVVTGHIWSMPKYS K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWYQVTYH  W
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFE-RMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD V  T MLSFAWIAADYLARIK R R  +  +S KPIN LG YL D I
Sbjct: 1139 VARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1821 bits (4718), Expect = 0.0
 Identities = 894/1199 (74%), Positives = 1014/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF++ V AKML +Y E+ +G VWRCRLK S+TPP+SYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E V R  +YEKV PHAFVHFA S S   AL AAG  ELILGK  L VSLGPENP+R+N
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P+K SDV VE+G++ S+DDFVVGWRGPR GVDFLVDPFN TCK++FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEA+H +IKCNFKIEF+ REINEIK+ KDF+S++IL QLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y    RVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRV+DE           FC Q  EGI+FK++FLVNAV+H+GI+NQHQM++EFF+LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
             + E+VNL ALKH++S K P  DA + L  +QKWLLKNPKLLE   ELDDIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP++EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L VNPP AYQIRYAG KGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M+S LD+MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAA+MLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CFVKHG KFS+  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+    K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  L IPGS  FI DAWN KC+YDGQL+ LLGQYKVNREEEVVTGHIWSMPKYS K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWYQVTY+  W
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFE-RMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD +  T MLSFAWIAADYLARIK R RG +  +S KPIN LG YL DKI
Sbjct: 1139 VARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1820 bits (4714), Expect = 0.0
 Identities = 893/1199 (74%), Positives = 1012/1199 (84%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF++ V AKML +Y E+ +G VWRCRLK SSTPP+SYP Y++
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E VQR + YEKV PHAFVHFA S S   AL AAG  ELILGK  L VSLGPENP+R+N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT  P+K SDV VE+G++ S+DDFVVGWRGPR GVDFLVDPFN TCK++FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            F+GEA+H +IKCNFKIEF+ REINEIK+ KDF+S++IL QLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGRCN YR+S+RPRNGPSF KA+ Y    RVP++   N
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRV+DE           FC Q  EGI+F++LFLVNAV+H+GI+NQHQM++EFF+LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
               E+VN  ALKH++S K P  DA + L  +QKWLLKNPKLL+   ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+VADRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT++F+RVK ILS GF+LCGRKYSFLAFSANQLRDRSAWFFAED KI VP I SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            GRF+NRNVAKCAARMGQCFSSTYATVEVP++EV+S+LPDI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VAEKL L+VNPP AYQIRYAGCKGVVACWP KNDG  L LRPSMKKF+S+HTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TRFQPGFLNRQI+TLLS+LDVKD IFW+MQ+ M+S LD+MLVD+D+AFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAA+MLSAGFKPQSEPHL GML+SIRA+QLGDLR +ARIFVPSGRWLMGCLDELG L QG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE+CFVKHG KFS+  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y P E K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V H DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKEEFQSY+S KILGKLYR++KD  D + E S+G+    K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD  LEI GS  FI DAWN KC+YDGQLN LLGQYKVNREEEVVTG+IWSMPKY+ K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWYQVTYH  W
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFE-RMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+ D V  T MLSFAWIAADYLARIK R R  +  +S KPIN LG YL D I
Sbjct: 1139 VARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score = 1814 bits (4699), Expect = 0.0
 Identities = 876/1194 (73%), Positives = 1019/1194 (85%), Gaps = 2/1194 (0%)
 Frame = -2

Query: 4041 GEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEVDTESV 3862
            G+  M++TQIS+GG E +VTAK+L DY EDN+GLVWRCR+KTSSTP +SYPNYE+DTE+V
Sbjct: 5    GDNDMIVTQISIGGLEGYVTAKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTENV 64

Query: 3861 QRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMNERRRT 3682
            QRK EYEKV+PHAFVHFA++ S  SA+  +G G+L+LG+++LKV LGP+NP+R+ ERRRT
Sbjct: 65   QRKGEYEKVEPHAFVHFAVAQSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERRRT 124

Query: 3681 VAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFSFKGEA 3502
              PYK+  V VEIG M+SRD+FVVGWRGPR G+DFLVDPFN TC+++FTK+TAFS KGEA
Sbjct: 125  TTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKGEA 184

Query: 3501 KHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESVPFDLL 3322
            +  VIKCNFK+EFVPREIN+IK+YKDFSS+++L QLASSPL+YYRTADDDIEESVPFDLL
Sbjct: 185  RPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFDLL 244

Query: 3321 DDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNTPE--LR 3148
            DDDDPWIRTTDF PSGAIGR N YR+SVRPR+     KAL YLQ  RVPV N +P+  LR
Sbjct: 245  DDDDPWIRTTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQERLR 304

Query: 3147 VRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRIQPEK 2968
            V+DE           FC QYKEG+ FK++F+VNAV+H+GIINQHQ S +FF LLR QPE+
Sbjct: 305  VQDEPDFGVPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQPEE 364

Query: 2967 VNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITPAKAY 2788
            +NLVALKHI+S KRP YDA + L  V KWL+KNPKLL+ P ++DDIVEVRRL+ITP+KAY
Sbjct: 365  LNLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSKAY 424

Query: 2787 CLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNSNPQR 2608
            CLPPEVELSNRVLR YKN++DRFLRVTFMDE MQTLNKNVLTYYA+ IVR+ITSN NPQR
Sbjct: 425  CLPPEVELSNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNPQR 484

Query: 2607 TSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMGRFTN 2428
            T+MFKRV+DIL  GFYLCGR+YSFLAFS+NQLRDRSAWFFAED+K  V  IK+WMG+FTN
Sbjct: 485  TTMFKRVRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKFTN 544

Query: 2427 RNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMRVAEK 2248
            RNVAKCAARMGQCFSSTYATVEVP+ + +SK  D++RN Y FSDGIG IS DLA  VAEK
Sbjct: 545  RNVAKCAARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVAEK 603

Query: 2247 LQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWTRFQP 2068
            LQL    PCAYQIRYAG KGVVACWPA+N+G+ L LRPSMKKF+SDHT LEICSWTRFQP
Sbjct: 604  LQLRTKLPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRFQP 663

Query: 2067 GFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNTAAIM 1888
            GFLNRQI+TLLS+L+V D+ FW+MQE M++RLD +L D D+AFDVLTASC++QGNTAA+M
Sbjct: 664  GFLNRQIVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAAMM 723

Query: 1887 LSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQCFVQ 1708
            L+AGF+  +EPHL GML SIR +QLGDLRE++RIFV SGRWLMGCLDELG+L  GQCF+Q
Sbjct: 724  LAAGFRSHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQ 783

Query: 1707 VSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLNHLYD 1528
            VS PSLEDCF  HGS+FSET K+L+VIKGLV IAKNPCLHPGDVRILEAVD+ GL+HLYD
Sbjct: 784  VSKPSLEDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHLYD 843

Query: 1527 CLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLPRDVK 1348
            CLVFPQ G+RPH NEASGSDLDGDLYFVTWD+ LIPPSKRSW+PM+Y PGE K  PR+V 
Sbjct: 844  CLVFPQKGERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPREVT 903

Query: 1347 HSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKTGKIV 1168
            HSDIIEFF+KNMVNESLG ICNAHVVHADLSE GALDEKCIKLAELAA AVDFPKTGKIV
Sbjct: 904  HSDIIEFFTKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIV 963

Query: 1167 TMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASKEIPYD 988
            TMP +LKP++YPDFMGKEE QSY+S KILGKLYR+++DAY+ DYEASS + + + +I YD
Sbjct: 964  TMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRVRDAYNLDYEASSQLTYPA-DISYD 1022

Query: 987  RDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGKKRGEL 808
            ++LE+ GS +FIADAW+CKC+YDGQL  LLGQYKVN E+EVVTGHIWSMPK+S KK+GEL
Sbjct: 1023 QELEVTGSKDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFSSKKQGEL 1082

Query: 807  KERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRWVQKSL 628
            KERLKHAYN L+KD+RKVFE             EKNV+YE+KASAWYQVTY   WV+KS 
Sbjct: 1083 KERLKHAYNALRKDYRKVFE-CMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDNWVKKSK 1141

Query: 627  ELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            ELQ  D  G+T +LSFAWIAADYLARIK R R  +N  S KPI+ LG YLADKI
Sbjct: 1142 ELQELDDSGKTVLLSFAWIAADYLARIKIRRRRMENAISGKPIDSLGRYLADKI 1195


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1788 bits (4632), Expect = 0.0
 Identities = 879/1199 (73%), Positives = 1004/1199 (83%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK +V+TQISVGGF + V AKML +  ED +G VWRCRLKTSSTPP+SYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E+V+R + Y KV+PHAFVHFA S S  +AL AA R EL L +  LKVSLGPENPF MN
Sbjct: 61   DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            +RRRT+ P+K SDV VEIG++ S DDFVVGWRGP +GV+FLVDPFN TCK++FT++TAF 
Sbjct: 121  KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            FKGE KH VIKCNFKIEF+ REINEI + KDF+S+++LLQL SSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLN--N 3163
             FDLLDDDD WIRTTD T SGAIGR N YR+S+RPRNGPS  KA+ Y ++ RVPV+   N
Sbjct: 241  AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300

Query: 3162 TPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLR 2983
               LRVRDE           FC Q  EGI+FK+LFLVNAV+ +GI+NQHQM+ EFF LLR
Sbjct: 301  RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360

Query: 2982 IQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIIT 2803
               E VNL ALKHI+S KRP  DA + L  VQKWL KNP LLE   +LDD+VEVRRL+IT
Sbjct: 361  KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420

Query: 2802 PAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSN 2623
            P KAYCLPP VELSNRVLR YK+V+DRFLRVTFMDEGM+ LN+NVLTYYA+ IVR+ITS+
Sbjct: 421  PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480

Query: 2622 SNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWM 2443
            SNPQRT +F+RVK ILS GFYLCGR+YSFLAFSANQLRDRSAWFFAE  +I VP I +WM
Sbjct: 481  SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540

Query: 2442 GRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAM 2263
            G+F NRNVAKCAARMGQCFSSTYATVEV  +EV+S+LPDI+RN Y FSDGIG +S DL++
Sbjct: 541  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600

Query: 2262 RVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSW 2083
             VA KLQL+VNPPCAYQIRYAGCKGVVACWPA+ DG  L LRPSMKKF+S+HTILEICSW
Sbjct: 601  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660

Query: 2082 TRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGN 1903
            TR QPGFLNRQIITLLS+L+VKD++FW+MQ+ M+S+LD++LVD+D+AFDV+TASCAE GN
Sbjct: 661  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720

Query: 1902 TAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 1723
            TAAIMLSAGFKPQSEPHL GML SIRAAQLGDLR + R+FVPSGRWLMGCLDEL  L QG
Sbjct: 721  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780

Query: 1722 QCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 1543
            QCF+QVS+PSLE CFVKHG KFSE  KNLQVIKGLV IAKNPCLHPGDVRILEAVD+PGL
Sbjct: 781  QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840

Query: 1542 NHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSL 1363
            +HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM+YAP EAK L
Sbjct: 841  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900

Query: 1362 PRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPK 1183
             R V+H+DII+FFSKNMV ESLG ICNAHVVHADLSE GALDEKC+KLAELAA AVDFPK
Sbjct: 901  GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960

Query: 1182 TGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASK 1003
            TGK+VTMP +LKPK+YPDFMGKE FQ+Y S KILGKLYR++ D YD +   SSG+ F  K
Sbjct: 961  TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD ++EI G  +FI DAWN KC+YDGQLN LLGQYKVN EEEVVTGHIWSMPKYS K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+GELKERLKHAYNTL+K+FR VFE            DEKN +YERKASAWY+VTYH  W
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFE-QMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHW 1139

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            V +SLELQ+PD V    MLSFAWIAADY+ARIK R RG +N +S KPIN LG YL +KI
Sbjct: 1140 VTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|XP_010319120.1| PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Solanum
            lycopersicum] gi|723688503|ref|XP_010319121.1| PREDICTED:
            RNA-dependent RNA polymerase 6 isoform X1 [Solanum
            lycopersicum]
          Length = 1197

 Score = 1774 bits (4595), Expect = 0.0
 Identities = 870/1198 (72%), Positives = 999/1198 (83%), Gaps = 1/1198 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK++V+TQISVGGF + V AKML +Y E+ +G VWRCRLKTSSTPP+SYP Y++
Sbjct: 1    MGSEGSEKNLVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E V+R + Y KV+PHAFVHFA S S  +AL AA R EL L +  LKVSLGPEN F MN
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            ERRRT  PYK SDV VEIG++ S DDFVVGWRGP +GV+FLVDPFN  CK++FT++TAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            FKGE KH VIKCNFKIEF+ REINEI + KDFSS+++LLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNTP 3157
             FDLLDDDD WIRTTD T SGAIGR N YRVS+RPRNGPSF KA+ Y ++ RVPV+    
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGE 300

Query: 3156 E-LRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRI 2980
            + LRVR+E           FC Q  EGI+FK+LFLVNAV+H+GI+NQHQM+ EFF LLR 
Sbjct: 301  QMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRK 360

Query: 2979 QPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITP 2800
              E VNL ALKHI+S KRP  DA + L  VQKWL  NP LLE   +LDD+VEVRRL+ITP
Sbjct: 361  HQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITP 420

Query: 2799 AKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNS 2620
             KAYCLPP VELSNRVLR YK+++DRFLRVTFMDEGM+ LN+N LTYYA+ IVR+ITS+S
Sbjct: 421  TKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSS 480

Query: 2619 NPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMG 2440
            NPQRT +F+RVK I++ GFYLCGR+YSFLAFSANQLRDRSAWFFAE  +I V  I +WMG
Sbjct: 481  NPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMG 540

Query: 2439 RFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMR 2260
            +F NRNVAKCAARMGQCFSSTYATVEV  +EV+S+LPDI+RN Y FSDGIG ++ DL++ 
Sbjct: 541  KFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIE 600

Query: 2259 VAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWT 2080
            VA KLQL+VNPPCAYQIRYAGCKGVVACWPA+ DG  L LRPSMKKF+S+HTILEICSWT
Sbjct: 601  VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660

Query: 2079 RFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNT 1900
            R QPGFLNRQIITLLS+L+VKD++FW+MQ+ M+S+LD++LVD+D+AFDV+TASCAE GNT
Sbjct: 661  RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNT 720

Query: 1899 AAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQ 1720
            AAIMLSAGFKPQSEPHL GML SIRAAQLGDLR + R+FV SGRWLMGCLDELG L QGQ
Sbjct: 721  AAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQ 780

Query: 1719 CFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLN 1540
            CF+QVS+PSLE CFVKHG +FSE  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+PGL+
Sbjct: 781  CFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840

Query: 1539 HLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLP 1360
            HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM YAP EAK L 
Sbjct: 841  HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLG 900

Query: 1359 RDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKT 1180
            R V+H+DII+FF KNMV ESLG ICNAHVVHADLSE GA+DEKC+KLAELAA AVDFPKT
Sbjct: 901  RQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKT 960

Query: 1179 GKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASKE 1000
            GK+VTMP +LKPK+YPDFMGKE FQSY S KILGKLYR++ D YD +   SSG+ +  K+
Sbjct: 961  GKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKD 1020

Query: 999  IPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGKK 820
            IPYD +LEIPG  +FI DAWN KC+YDGQLN LLGQYKVN EEEVVTGHIWSMPKYS KK
Sbjct: 1021 IPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKK 1080

Query: 819  RGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRWV 640
            +GELKERLKHAYN L+K+FR VFE            DEKN +YERKA AWY+VTYH  WV
Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFE-QMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWV 1139

Query: 639  QKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
             +SLELQ+PD V    MLSFAWIAADY+ARIK R RG +N +S KPI+ LG YL +KI
Sbjct: 1140 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1768 bits (4578), Expect = 0.0
 Identities = 867/1198 (72%), Positives = 997/1198 (83%), Gaps = 1/1198 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+  + ++V+TQISVGGF + V AKML +Y E+ +G VWRCRLKTSSTPP+SYP Y++
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3876 DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRMN 3697
            D E V+R + Y KV+PHAFVHFA S S  +AL AA R EL L +  LKVSLGPEN F MN
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 3696 ERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAFS 3517
            ERRRT  PYK SDV VEIG++ S DDFVVGWRGP +GV+FLVDPFN  CK++FT++TAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 3516 FKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEESV 3337
            FKGE KH VIKCNFKIEF+ REINEI + KDFSS+++LLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 3336 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNTP 3157
             FDLLDDDD WIRTTD T SGAIGR N YRVS+RPRNGPSF KA+ Y ++ RVPV+    
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQGE 300

Query: 3156 E-LRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRI 2980
            + LRVR+E           FC Q  EGI+FK+LFLVNAV+H+GI+NQHQM+ EFF LLR 
Sbjct: 301  QMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLRK 360

Query: 2979 QPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITP 2800
              E VNL ALKHI+S KRP  DA + L  VQKWL  NP LLE   +LDD+VEVRRL+ITP
Sbjct: 361  HQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVITP 420

Query: 2799 AKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNS 2620
             KAYCLPP VELSNRVLR YK+++DRFLRVTFMDEGM+ LN+N LTYYA+ IVR+ITS+S
Sbjct: 421  TKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSS 480

Query: 2619 NPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMG 2440
            NPQRT +F+RVK I++ GFYLCGR+YSFLAFSANQLRDRSAWFFAE  +I V  I +WMG
Sbjct: 481  NPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMG 540

Query: 2439 RFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMR 2260
            +F NRNVAKCAARMGQCFSSTYATVEV  +EV+S+LPDI+RN Y FSDGIG ++ DL++ 
Sbjct: 541  KFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSIE 600

Query: 2259 VAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWT 2080
            VA KLQL+VNPPCAYQIRYAGCKGVVACWPA+ DG  L LRPSMKKF+S+HTILEICSWT
Sbjct: 601  VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660

Query: 2079 RFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNT 1900
            R QPGFLNRQIITLLS+L+VKD++FW+MQ+ M+S+LD++LVD+D+AFDV+TASCAE GNT
Sbjct: 661  RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNT 720

Query: 1899 AAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQ 1720
            AAIMLSAGFKPQSEPHL GML SIRAAQLGDLR + R+FV SGRWLMGCLDELG L QGQ
Sbjct: 721  AAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQ 780

Query: 1719 CFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLN 1540
            CF+QVS+PSLE CFVKHG +FSE  KNLQV+KGLV IAKNPCLHPGDVRILEAVD+PGL+
Sbjct: 781  CFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840

Query: 1539 HLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLP 1360
            HLYDCLVFPQ GDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM YAP EAK L 
Sbjct: 841  HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLG 900

Query: 1359 RDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKT 1180
            R V+H+DII+FF KNMV ESLG ICNAHVVHADLSE GA+DEKC+KLAELAA AVDFPKT
Sbjct: 901  RQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKT 960

Query: 1179 GKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASKE 1000
            GK+VTMP +LKPK+YPDFMGKE FQSY S KILGKLYR++ D YD +   SSG+ +  K+
Sbjct: 961  GKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKD 1020

Query: 999  IPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGKK 820
            IPYD +LEIPG  +FI DAWN KC+YDGQLN LLGQYKVN EEEVVTGHIWSMPKYS KK
Sbjct: 1021 IPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKK 1080

Query: 819  RGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRWV 640
            +GELKERLKHAYN L+K+FR VFE            DEKN +YERKA AWY+VTYH  WV
Sbjct: 1081 QGELKERLKHAYNMLRKEFRNVFE-QMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWV 1139

Query: 639  QKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
             +SLELQ+PD V    MLSFAWIAADY+ARIK R RG +N +S KPI+ LG YL +KI
Sbjct: 1140 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
            gi|731385864|ref|XP_010648660.1| PREDICTED: RNA-dependent
            RNA polymerase 6 [Vitis vinifera]
            gi|731385866|ref|XP_010648661.1| PREDICTED: RNA-dependent
            RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1748 bits (4528), Expect = 0.0
 Identities = 865/1201 (72%), Positives = 997/1201 (83%), Gaps = 4/1201 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK MV+TQIS+GGF+ +VTA  L  Y ED IG V RCRLKTSSTPPESYP++E+
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             DT  ++R  +Y+KV+PHAFVHF    +   ALDAAG+ EL L    LKVSLGPE PF +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N+RRRT  P+K  DV +EIG++ SRD++  GWRGP +GVDFLVDPF+ TCK +FTK+TAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            SFKG  KH VIKCNFK+EF+ REINE++Q +D SS+I+LLQL+SSP VYYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNT 3160
            VPFDLLDDDDPWIRTTDFT SGAIGRCN YR+S+ PR G    KA++YL+  RV VL ++
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 3159 P--ELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLL 2986
            P  +LRVRDE           FCIQ+KEGI F+++FLVNAVMH+GIINQHQ+SD+FF LL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 2985 RIQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLII 2806
            R Q + +N+ ALKHI S + P +DA + L  V KWLLKNPKLL+ P+ELDDIVEVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 2805 TPAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITS 2626
            TP+KAYCLPPEVELSNRVLR YK V+DRFLRVTFMDEGMQT+N NVL YY + IV+ ITS
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 2625 NSNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSW 2446
            NS PQ+T +FKRVK IL++GFYLCGRKYSFLAFS+NQLRDRSAWFFAEDKK  V  IKSW
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 2445 MGRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLA 2266
            MG+FTNRNVAKCAARMGQCFSSTYATVEVP+ EV  +LPDIKRN YDFSDGIGKI  DLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 2265 MRVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICS 2086
            M VAEKL+L    P AYQIRYAGCKGVVACWP+ NDG  L  RPSM KF SDHTILEICS
Sbjct: 600  MEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 2085 WTRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQG 1906
            WTRFQPGFLNRQI+TLLSAL+V D IFWKMQE+M+S+L++ML DTD+AFDVL ASCAEQG
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 1905 NTAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQ 1726
            NTAAIMLSAGFKPQ+EPHL GMLT IRAAQ   LRE+ARIFVPSGRWLMGCLDELG+L Q
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 1725 GQCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPG 1546
            GQCF+QVS+PSLE+CF+KHGS+FS   KNL+VIKG+VAIAKNPCLHPGDVRILEAVD PG
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 1545 LNHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKS 1366
            L HL DCLVFPQ GDRPH+NEASGSDLDGDLYFVTW+E LIPPSK+SW PM+Y   EAK+
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 1365 LPRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFP 1186
            L R+V   DII+FF+KNMVNE+LGAICNAHVVHAD SE GALDE C+ LAE AATAVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 1185 KTGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFAS 1006
            KTGK+VT+P  LKPK+YPDFMGKEEFQ+YRS KILGK+YR+IKDAY+ED   SS   F +
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 1005 KEIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSG 826
             ++P+D DL IPGSA+FI DAW  KC+YDGQLN LLGQYKV REEEVVTGH+WSMPKY  
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 825  KKRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRR 646
            +K+GEL ERLKHAY++LKK+FR++FE            DEKN +YE+KASAWYQVTYH  
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFE-KMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPT 1136

Query: 645  WVQKSLELQVPDGV-GETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADK 469
            WV+KSLELQ PD V GE  MLSFAWI ADYLARIK R +GT NV+S+KPIN L  +L D+
Sbjct: 1137 WVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDR 1196

Query: 468  I 466
            I
Sbjct: 1197 I 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1731 bits (4482), Expect = 0.0
 Identities = 844/1199 (70%), Positives = 982/1199 (81%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M ++G  K  V+TQ+S+GGF+  VTAK LL+Y E  IGLVWRCRLKTS TPPESYPN+E+
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             D   + R  +Y +V+PHAFVHFAL  S   A+DAA R EL L    LK SLGPENPF +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N+RRR   P+KLS V VEIG + SRD+F VGWRGP  GVDFLVDPF+ TC+  F++ TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            SFK  A+H VIKC+FK+EF+ R+INEIKQY + S +++LLQLAS+P V+YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNT 3160
            VPFDLLDDDDPWIRTTDFT SGAIGRC+ YRVS+ PR+GP   KA+++L++ RV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 3159 PELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRI 2980
              +R+RDE           FCI +KEGI F +LFLVNAVMH+GI NQHQ+S++FF LLR 
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 2979 QPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITP 2800
            QP +VN+ ALKHI+  +RP +DA K L   Q+WLLKNPK  +  ++LDDI E+RRL+ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 2799 AKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNS 2620
             KAYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+QT+N N L Y+A+ IVR ITS S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 2619 NPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMG 2440
             PQ+T +FKRV+ IL+ GFYLCGR+YSFLAFS+NQLRDRSAWFFAED+ I V  IKSWMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 2439 RFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMR 2260
            +FTN+N+AKCAARMGQCFSSTYAT+EVP  EV+S LPDIKRN YDFSDGIG I+ DLA  
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 2259 VAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWT 2080
            VAEKL+   +PPCAYQIRYAGCKGVVACWP + DG  L LR SM KF+S+HTILEICSWT
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 2079 RFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNT 1900
            RFQPGFLNRQIITLLSAL+V D +FWKMQE MVS+L++MLVD+D+AFDVLTASCAEQGN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720

Query: 1899 AAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQ 1720
            AAIMLSAGFKPQ EPHL GMLT +RAAQL  LRE+ARIFVPSGRWLMGCLDELG+L QGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 1719 CFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLN 1540
            CF+QVSN  LE+CFVKHGSKFSET KNLQV+KG V IAKNPCLHPGD+RILEAVD PGL+
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 1539 HLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLP 1360
            HLYDCLVFPQ G+RPH NEASGSDLDGDLYFVTWDENLIPPSKRSW+PM+Y   EAK L 
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 1359 RDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKT 1180
            R V H DI+EFF+KNM NE+LGAICNAHVV ADLSE GALDEKC+ LAELAATAVDFPKT
Sbjct: 901  RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 1179 GKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAY-DEDYEASSGVAFASK 1003
            GKIV+MP++LKPK+YPDFMGKEE QSY+S KILG+LYR+IKDAY D+D  ASS + F   
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD DLE+ G+ +FI+DAW+ KC+YDGQLN LL QYKV REEEVVTGH+WSMPK S +
Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K+G+LKERLKH+YN LK++FR+VFE            DEKN++YERKASAWYQVTYH  W
Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFE-KMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHW 1139

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            +QKSLELQ  DG G + MLSFAWIAADYLARIK R     NV+S KP+N L  YLAD++
Sbjct: 1140 IQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
            gi|643731347|gb|KDP38635.1| hypothetical protein
            JCGZ_03988 [Jatropha curcas]
          Length = 1198

 Score = 1728 bits (4475), Expect = 0.0
 Identities = 845/1199 (70%), Positives = 987/1199 (82%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M ++  EK  V+TQ+S GGFE+ V AK L+ Y E+ IG VWRCRLKTS TPPESYPN+++
Sbjct: 1    MGTERSEKDTVVTQVSFGGFENHVNAKDLVAYLEEVIGQVWRCRLKTSWTPPESYPNFKI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             DT  + R +EY++V+PHAFVHFAL+ S   A +AAGR EL L    LKVSLGPENPF +
Sbjct: 61   TDTAGIHRTNEYKRVEPHAFVHFALAESATWAKNAAGRCELFLNDRPLKVSLGPENPFTL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N+RRR   P KLSDVC+EIG+M SRD+F+VGWRGP +GVDFLVDPF+ TCK  FT++TAF
Sbjct: 121  NQRRRKTIPSKLSDVCIEIGMMVSRDEFLVGWRGPPSGVDFLVDPFDGTCKFCFTRDTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            S K   KH VI+C+FK+EF+ R+INEIKQYKD S ++ILLQLAS+P V+YRTADDDIE  
Sbjct: 181  SIKDTNKHAVIRCDFKLEFLVRDINEIKQYKDTSYLVILLQLASAPWVWYRTADDDIEVL 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNT 3160
            VPF+LLDDDDPWIRTTDFTPSGAIGRCN YRVS+ PR+G    +A+ YL++ RV V +  
Sbjct: 241  VPFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLERAINYLKERRVQVDSLR 300

Query: 3159 PELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRI 2980
              L++ +E           FCI  KEGI F+I+FLVNAVMH+GI NQHQ+SD+FF LLR 
Sbjct: 301  RPLKILNEPDYGMPMSDPFFCIHRKEGIAFEIVFLVNAVMHKGIFNQHQLSDDFFDLLRN 360

Query: 2979 QPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITP 2800
            QP  +N+ ALKHI S KRP +DA + L  VQ+WLLKNPKL + P++LDDIV++RRL ITP
Sbjct: 361  QPADINVAALKHICSYKRPVFDAHRRLKAVQEWLLKNPKLFKCPKQLDDIVQIRRLAITP 420

Query: 2799 AKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNS 2620
             +AYCLPPE+ELSNRVLR YKN ADRFLRVTFMDEG+QT+N N LTYY + IVRDITS S
Sbjct: 421  TRAYCLPPEIELSNRVLRKYKNFADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTS 480

Query: 2619 NPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMG 2440
              Q+T +FKRVK IL++GFYLCGR+YSFLAFS+NQLRDRSAWFFAED KI V +I+ WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDGKIRVDQIRKWMG 540

Query: 2439 RFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMR 2260
            +FTN+N+AKCAARMGQCFSSTYATVEVP+ EV+   PDI+RN Y FSDGIG I+ DLA  
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATVEVPSAEVNLAHPDIERNGYTFSDGIGMITPDLAKA 600

Query: 2259 VAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWT 2080
            VAEKL+L +NPPCAYQIRYAGCKGVVACWPA+ DG  L LRPSM KF+S+HT LEICSWT
Sbjct: 601  VAEKLKLDINPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLEICSWT 660

Query: 2079 RFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNT 1900
            RFQPGFLNRQIITLLS L+V D+IFWKMQ  MVS+L++ML D D+AFDV+TASC EQGNT
Sbjct: 661  RFQPGFLNRQIITLLSTLNVSDEIFWKMQIAMVSKLNKMLTDADVAFDVITASCTEQGNT 720

Query: 1899 AAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQ 1720
            AA+MLSAGFKPQ+EPHL GMLT IRAAQ  DLRE+ARIFV SGRWLMGCLDELG+L QGQ
Sbjct: 721  AALMLSAGFKPQNEPHLRGMLTCIRAAQFCDLREKARIFVSSGRWLMGCLDELGVLEQGQ 780

Query: 1719 CFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLN 1540
            CF+QVSNPSLE CF KHGS+FSET KNLQVI G V IAKNPCLHPGDVRILEAVD PGL 
Sbjct: 781  CFIQVSNPSLETCFSKHGSRFSETKKNLQVITGTVVIAKNPCLHPGDVRILEAVDAPGLC 840

Query: 1539 HLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLP 1360
            HL+DCLVFPQ GDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PM+Y   E K L 
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWTPMQYDAAEPKLLS 900

Query: 1359 RDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKT 1180
            R V H DII+FF+KNMVNESLGAICNAHVV ADLSE GALDE CIKLAELAATAVDFPKT
Sbjct: 901  RPVSHQDIIDFFAKNMVNESLGAICNAHVVRADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 1179 GKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAY-DEDYEASSGVAFASK 1003
            GK+VT+P  LKPK+YPDFMGKEE+QSY+S KILG+LYR IKDAY D+D  ASS +  +S 
Sbjct: 961  GKLVTLPQYLKPKMYPDFMGKEEYQSYKSTKILGRLYRDIKDAYGDDDAAASSELNCSSG 1020

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            +IPYD +LE+ GSA++I +AW+ KC+YDGQL  LLGQYKV +EEE+VTGHIWSMP Y+ +
Sbjct: 1021 DIPYDTNLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKKEEELVTGHIWSMPMYNSR 1080

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            K GELKERLKH+Y+ LKK+FR+VFE            DEKN++YERKASAWYQVTYH +W
Sbjct: 1081 KLGELKERLKHSYSALKKEFRQVFE-KMDLDFEQLTDDEKNLLYERKASAWYQVTYHPKW 1139

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            ++KSLELQ PD  G   +LSFAWIAADYLARIK + RGT+ V++ KP+N L  YLAD+I
Sbjct: 1140 IKKSLELQEPDAAGNATILSFAWIAADYLARIKIKHRGTEGVDTAKPVNSLVKYLADRI 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1728 bits (4475), Expect = 0.0
 Identities = 836/1201 (69%), Positives = 989/1201 (82%), Gaps = 4/1201 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M ++G  K  V+TQ+SVGGF+  VTAK LL+Y +  IGLVWRCRLKTS TPPESYPN+E+
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             D   ++R  +Y +V PHAFVHFAL  S   A++A+GR EL L    LKVSLGP+NPF +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N+RRRT  P+KLSDV  EIG + SRD+F VGWRGP +GVDFLVDPF+ TCK  F++ TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            S K  ++H VIKC+FK+EF+ R+INEI QY + S +++LLQLAS+P V+YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVL--- 3169
            VPFDLLDDDDPWIRTTDFT SGAIGRC+ YRVS+ PR+G    KA++YL++ RV VL   
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 3168 NNTPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHL 2989
            N+   +R+ DE           FCI +KEGI F++LFLVNAVMH+GI NQHQ+S++FF L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 2988 LRIQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLI 2809
            LR Q  +VN+ ALKHI + +RP ++A + L  VQ+WLLKNP L + P++L D+VE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 2808 ITPAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDIT 2629
            ITP KAYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+Q +N NVL YY + IVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 2628 SNSNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKS 2449
            SNS PQ+T +FKRV+ IL+ GFYLCGR+YSFLAFSANQLRD+SAWFF+E++ I V  +KS
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 2448 WMGRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDL 2269
            WMG+FTNRN+AKCAARMGQCFSSTYAT+EVP  EV+S LPDI+RN Y FSDGIG I+ DL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 2268 AMRVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEIC 2089
            A  VAEKL+L ++PPCAYQIRYAGCKGVVACWP K DG  L LRPSM KF+S+HT LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2088 SWTRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQ 1909
            SWTRFQPGFLNRQIITLLS L+V D +FWKMQETMVS+L++M V++D+AFDVLTASCA+Q
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 1908 GNTAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILR 1729
            GN AAIMLSAGFKP  EPHL GMLT +RAAQL DLRE+ RIFVPSGRWLMGCLDELG+L 
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 1728 QGQCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIP 1549
            QGQCF+QVSN SLE CF+KHG+KFSE  KNLQVIKG V IAKNPCLHPGDVR+LEAVD+P
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 1548 GLNHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAK 1369
            GL+HLYDCLVFPQ G+RPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW+PM+Y   EAK
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 1368 SLPRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDF 1189
             L R V H DIIEFF+KNMVN++LGAICNAHVVHADLSE GA D+ C+ LAELAATAVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 1188 PKTGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFA 1009
            PKTGK+V+MP  LKPK+YPDFMGKEE+QSY+S KILG+LYR+IKDAYDED  ASS +   
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 1008 SKEIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYS 829
              +IPYD DLE+ G++++I+DAW+ KC+YDGQLN LL QYKV REEEVVTGHIWSMPKYS
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 828  GKKRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHR 649
             +K+GELK+RLKH+YN+LKK+FR++FE             EKN +YE+KASAWYQV YH 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFE-KMDLEFEQLEDGEKNKLYEQKASAWYQVVYHP 1139

Query: 648  RWVQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADK 469
             WV+KSLELQ PDG G + MLSFAWIAADYLARIK R R T NV+S KP+N L  YLAD+
Sbjct: 1140 HWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADR 1199

Query: 468  I 466
            +
Sbjct: 1200 M 1200


>ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1200

 Score = 1719 bits (4453), Expect = 0.0
 Identities = 836/1201 (69%), Positives = 984/1201 (81%), Gaps = 4/1201 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M ++G  K  V+TQ+SVGGF   VTAK L +Y +  IGLVWRCRLKTS TPPESYPN+E+
Sbjct: 1    MEAEGSAKETVVTQVSVGGFGIHVTAKDLSEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             D   ++R  +Y +V PHAFVHFAL  S   A++A+ R EL L    LKVSLGP+NPF +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATWAMNASERCELFLNDKALKVSLGPKNPFTL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N++RRT  P+KLSDV  EIG + S D+F VGWRGP +GVDFLVDPF+ TC+  F++ TAF
Sbjct: 121  NQQRRTTTPFKLSDVGFEIGSLVSHDEFFVGWRGPPSGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            S K  ++H VIKC FK+EF+ R+INEI QY + S +++LLQLAS+P V+YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCAFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVL--- 3169
            VPFDLLDDDDPWIRTTDFT SGAIGRC+ YRVS+ PR+G    KA++YL++ RV VL   
Sbjct: 241  VPFDLLDDDDPWIRTTDFTGSGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVEVLQEE 300

Query: 3168 NNTPELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHL 2989
            N+   +R+ DE           FCI +KEGI F +LFLVNAVMH+GI NQHQ+S++FF L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 2988 LRIQPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLI 2809
            LR Q  +VN+ ALKHI + +RP ++A K L  VQ+WLLKNP L + P++L DIVE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYKRLKAVQEWLLKNPNLFKNPKQLGDIVEIRRLV 420

Query: 2808 ITPAKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDIT 2629
            ITP KAYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+Q +N NVL YY + IVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 2628 SNSNPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKS 2449
            SNS  Q+T +FKRV+ IL+ GFYLCGR+YSFLAFSANQLRD+SAWFFAE++ + V  IKS
Sbjct: 481  SNSFHQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFAEERNVSVLDIKS 540

Query: 2448 WMGRFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDL 2269
            WMG+FTNRN+AKCAARMGQCFSSTYAT+EVP  EV+  LPDI+RN Y FSDGIG I+ DL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNFDLPDIERNGYVFSDGIGIITPDL 600

Query: 2268 AMRVAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEIC 2089
            A  VAEKL+L ++PPCAYQIRYAGCKGVVACWP K DG HL LRPSM KF+S+HT LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVHLSLRPSMNKFQSNHTTLEIC 660

Query: 2088 SWTRFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQ 1909
            SWTRFQPGFLNRQIITLLS L+V D +FWKMQETMVS+L++M V++D+AFDVLTASCA+Q
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 1908 GNTAAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILR 1729
            GN AAIMLSAGFKPQ EPHL GMLT +RAAQL  LRE+ARIFVPSGRWLMGCLDELG+L 
Sbjct: 721  GNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGMLE 780

Query: 1728 QGQCFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIP 1549
            QGQCF+QVSN SLE CF+KHG+KFSE  KNLQV+KG V IAKNPCLHPGDVR+LEAVD+P
Sbjct: 781  QGQCFIQVSNSSLEKCFIKHGAKFSEAKKNLQVVKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 1548 GLNHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAK 1369
            GL+HLYDCLVFPQ G+RPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW+PM+Y   EAK
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 1368 SLPRDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDF 1189
             L R V H DIIEFF+KNMVNE+LGAICNAHVVHADLSE GA+DEKC+ LAELAATAVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNENLGAICNAHVVHADLSEHGAMDEKCLTLAELAATAVDF 960

Query: 1188 PKTGKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFA 1009
            PKTGK+VTMP+ LKPK+YPDFMGKEE+QSY+S KILG+LYR+IKDAYDED  ASS +   
Sbjct: 961  PKTGKVVTMPSYLKPKVYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNPV 1020

Query: 1008 SKEIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYS 829
              +IPYD DLE+ G++++I DAW+ KC+YDGQLN LL QYKV REEE+VTGHIWSMPKYS
Sbjct: 1021 PGDIPYDSDLEVVGASDYINDAWDQKCSYDGQLNGLLSQYKVKREEELVTGHIWSMPKYS 1080

Query: 828  GKKRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHR 649
             +K+GELK+RLKH+YN+LKK+FR++FE             EKN +YE+KASAWYQV YH 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFE-KMDLEFEQLEDGEKNKLYEQKASAWYQVAYHP 1139

Query: 648  RWVQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADK 469
             WV+KSLELQ PDG G + MLSF WIAADYLARIK R R T NV+S KP+N L  YLAD+
Sbjct: 1140 HWVKKSLELQDPDGAGTSVMLSFGWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADR 1199

Query: 468  I 466
            I
Sbjct: 1200 I 1200


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score = 1719 bits (4453), Expect = 0.0
 Identities = 834/1198 (69%), Positives = 984/1198 (82%), Gaps = 1/1198 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M S+G EK  V+TQ+SVGGF   V AK L++YF++ +G+VWRCRLKTS TPPESYPN+E+
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             D+  +QR  +Y+KV+PHAFVHFA   +   A+DAAGR EL+    LLKVSLGPENP+ +
Sbjct: 61   LDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N RRR   P+KLSDVC++IG M SRD+F VGWRGP  GVDFLVDPF+ TCK  F+++TAF
Sbjct: 121  NRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            SFKG  ++ VIKC+FK+EF+ R+INEIKQY + S +++ LQLASSP V+YRTADD+IEES
Sbjct: 181  SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEES 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNT 3160
            VPFDLLDDDD WIRTTDFTPSGAIGRCN YRV +RPR+G    KAL+YL++ RVP+    
Sbjct: 241  VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVR 300

Query: 3159 PELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRI 2980
              LR+ DE           +CI YKEGI F+I+FLVNAVMH+GI NQHQ+S++FF+LLR 
Sbjct: 301  WPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRD 360

Query: 2979 QPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITP 2800
            QP +VN+ ALKHI+S +RP +DA K L  V  WLL+NP L + P++LDDIVE+RRL+ITP
Sbjct: 361  QPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITP 420

Query: 2799 AKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNS 2620
             KA+CL PEVELSNRVLR YK VADRFLRVTFMDEGMQT+N NVLTYYA+ IVRD+TS  
Sbjct: 421  TKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTF 480

Query: 2619 NPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMG 2440
              Q+T +FKRV+ IL++GFYLCGRKYSFLAFSANQLRD SAWFFAED K  V +I  WMG
Sbjct: 481  FSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMG 540

Query: 2439 RFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMR 2260
            +FTNRN+AKCAARMGQCFSSTYATVEVP+TEV+  LPDI+RN Y FSDGIGKI+ DLA  
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKE 600

Query: 2259 VAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWT 2080
            VA+KL+L +NPPCAYQIRYAGCKGVVACWP + DG  L LR SM KF SDHT LEICSWT
Sbjct: 601  VAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWT 660

Query: 2079 RFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNT 1900
            RFQPGFLNRQIITLLS   V D++FW+MQ TMVS+L+++LVDTD+AF+VLT+SC+EQGN 
Sbjct: 661  RFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNA 720

Query: 1899 AAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQ 1720
            AAIMLSAGFKPQ+EPHL G+LT +RA+QL  LRE+ARIFVPSGRWLMG LDELG+L QGQ
Sbjct: 721  AAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQ 780

Query: 1719 CFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLN 1540
            CF+QVSNPS+E+CF+KHGS+F+ET KN +VI+GLV IAKNPCLHPGD+RILEAVD PGL+
Sbjct: 781  CFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 1539 HLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLP 1360
            HLYDCLVFPQ G+RPHTNEASGSDLDGDLYFVTW++ LIPP K+SW PM+Y PGE K + 
Sbjct: 841  HLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQ 900

Query: 1359 RDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKT 1180
            R+V H DII+FF+KNMVNE LG ICNAHVVHADLSE GALDEKCI LAELAATAVDFPKT
Sbjct: 901  REVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKT 960

Query: 1179 GKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAYDEDYEASSGVAFASKE 1000
            GKIV+MPA LKPKLYPDFMGKEE+QSY+S KILG+LYR IKD YDED   SS +   S +
Sbjct: 961  GKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPD 1020

Query: 999  IPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGKK 820
            I YD DLE+ GSA++I DAW  KC+YD QL  LLGQYKV REEEVVTGHIWSMPKY+ +K
Sbjct: 1021 INYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRK 1080

Query: 819  RGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRWV 640
             G+LKE+L H+Y  L+K+FR++FE            DE+N +YERKASAWYQVTYH +WV
Sbjct: 1081 LGDLKEKLGHSYGALRKEFRQIFE-SMDSEIEQLNEDERNELYERKASAWYQVTYHPKWV 1139

Query: 639  QKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            +K LELQ  DG     MLSFAWIAADYLARIK R +GT NV+ +KP+N L  YLADKI
Sbjct: 1140 EKKLELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1195

 Score = 1719 bits (4452), Expect = 0.0
 Identities = 843/1199 (70%), Positives = 981/1199 (81%), Gaps = 2/1199 (0%)
 Frame = -2

Query: 4056 MASKGGEKSMVITQISVGGFEDFVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEV 3877
            M ++G  K  V+TQ+S+GGF+  VTAK LL+Y E  IGLVWRCRLKTS TPPESYPN+E+
Sbjct: 1    METEGSAKETVVTQVSIGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3876 -DTESVQRKHEYEKVKPHAFVHFALSSSVMSALDAAGRGELILGKNLLKVSLGPENPFRM 3700
             D   + R  +Y +V+PHAFVHFAL  S   A+DAA R EL L    LK SLGPENPF +
Sbjct: 61   ADLTKITRTEDYRRVEPHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 3699 NERRRTVAPYKLSDVCVEIGLMRSRDDFVVGWRGPRNGVDFLVDPFNATCKLVFTKETAF 3520
            N+RRR   P+KLSDV VEIG + SRD+F VGWRGP  GVDFLVDPF+ TC+  F++ TAF
Sbjct: 121  NQRRRKTTPFKLSDVDVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 3519 SFKGEAKHTVIKCNFKIEFVPREINEIKQYKDFSSMIILLQLASSPLVYYRTADDDIEES 3340
            SFK  A+H VIKC+FK+EF+ R+INEIKQYK+ S +++LLQLAS+P V+YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYKETSCLVLLLQLASAPWVWYRTADDDIEVS 240

Query: 3339 VPFDLLDDDDPWIRTTDFTPSGAIGRCNIYRVSVRPRNGPSFNKALEYLQKHRVPVLNNT 3160
            VPFDLLDDDDPWIRTTDFT SGAIGRC+ YRVS+ PR+GP   KA+++L++ RV      
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 3159 PELRVRDEXXXXXXXXXXXFCIQYKEGITFKILFLVNAVMHRGIINQHQMSDEFFHLLRI 2980
              +R+RDE           FCI +KEGI F +LFLVNAVMH+GI NQHQ+S++FF LLR 
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 2979 QPEKVNLVALKHIWSLKRPSYDACKTLGFVQKWLLKNPKLLEGPRELDDIVEVRRLIITP 2800
            QP +VN+ ALKHI+  +RP +DA K L   Q+WLLKNPKL +  ++LDDI E+RRLIITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVTQEWLLKNPKLFKNQKKLDDIAEIRRLIITP 420

Query: 2799 AKAYCLPPEVELSNRVLRYYKNVADRFLRVTFMDEGMQTLNKNVLTYYASGIVRDITSNS 2620
             KAYCLPPEVELSNRVLR YK+VADRFLRVTFMDEG+QT+N N L Y+A+ IVR ITS S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGVQTMNSNALNYFAAPIVRAITSYS 480

Query: 2619 NPQRTSMFKRVKDILSNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKKIVVPKIKSWMG 2440
             PQ+T +FKRV+ IL+ GFYLCGR+YSFLAFS+NQLRDRSAWFFAED+ I V  IKSWMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 2439 RFTNRNVAKCAARMGQCFSSTYATVEVPATEVDSKLPDIKRNEYDFSDGIGKISTDLAMR 2260
            +FTN+N+AKCAARMGQCFSSTYAT+EVP  EV+S LPDIKRN YDFSDGIG I+ DLA  
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 2259 VAEKLQLTVNPPCAYQIRYAGCKGVVACWPAKNDGNHLYLRPSMKKFESDHTILEICSWT 2080
            VAEKL+   +PP AYQIRYAGCKGVVACWP + DG  L LR SM KF+S+HTILEICSWT
Sbjct: 601  VAEKLKFDFDPPSAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 2079 RFQPGFLNRQIITLLSALDVKDDIFWKMQETMVSRLDRMLVDTDLAFDVLTASCAEQGNT 1900
            RFQPGFLNRQIITLLSAL+V D +FWKMQE MVS+L++MLVD+D+AFDVLTASCAE GN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQEIMVSKLNQMLVDSDVAFDVLTASCAELGNV 720

Query: 1899 AAIMLSAGFKPQSEPHLSGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQGQ 1720
            AAIMLSAGFKPQ EPHL GML  +RAAQL  LRE+ARIFVPSGRWLMGCLDEL +L QGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLNCVRAAQLWGLREKARIFVPSGRWLMGCLDELAVLEQGQ 780

Query: 1719 CFVQVSNPSLEDCFVKHGSKFSETNKNLQVIKGLVAIAKNPCLHPGDVRILEAVDIPGLN 1540
            CF+QVSN  LE+CFVKHGSKFSET +NLQV+KG V IAKNPCLHPGD+RILEAVD PGL+
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKRNLQVVKGTVVIAKNPCLHPGDIRILEAVDDPGLH 840

Query: 1539 HLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWVPMEYAPGEAKSLP 1360
            HLYDCLVFPQ G+RPH NEASGSDLDGDLYFVTWDENLIPPSKRSW+PM+Y   EAK L 
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 1359 RDVKHSDIIEFFSKNMVNESLGAICNAHVVHADLSEDGALDEKCIKLAELAATAVDFPKT 1180
            R V H DIIEFF+KNM NE+LGAICNAHVV ADLSE GALDEKC+ LAELAATAVDFPKT
Sbjct: 901  RPVNHQDIIEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 1179 GKIVTMPAELKPKLYPDFMGKEEFQSYRSGKILGKLYRKIKDAY-DEDYEASSGVAFASK 1003
            GKIV+MP++LKPK+YPDFMGKEE QSY+S KILG+LYR+IKDAY D+D  ASS + F   
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSDLNFVPG 1020

Query: 1002 EIPYDRDLEIPGSANFIADAWNCKCAYDGQLNCLLGQYKVNREEEVVTGHIWSMPKYSGK 823
            ++PYD DLE+ G+ ++I+DAW+ KC+YDGQLN LL QYKV REEEVVTGH+WSMPK S +
Sbjct: 1021 DVPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080

Query: 822  KRGELKERLKHAYNTLKKDFRKVFEXXXXXXXXXXXXDEKNVIYERKASAWYQVTYHRRW 643
            ++G+LKERLKH+YN LK++FR+VFE            DEKN++YERKASAWYQVTYH RW
Sbjct: 1081 QQGDLKERLKHSYNCLKREFRQVFE-KMDLDFGQLDDDEKNMLYERKASAWYQVTYHPRW 1139

Query: 642  VQKSLELQVPDGVGETAMLSFAWIAADYLARIKFRCRGTKNVESNKPINHLGSYLADKI 466
            +QKSLELQ  DG    AMLSFAWIAADYLARIK R     NV+S KPIN L  YLAD++
Sbjct: 1140 IQKSLELQDSDG---AAMLSFAWIAADYLARIKIRHSRIGNVDSAKPINSLAKYLADRM 1195