BLASTX nr result
ID: Forsythia22_contig00001915
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00001915
(1159 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 162 9e-54
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 166 1e-49
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 169 2e-49
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 169 2e-49
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 170 3e-48
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 163 8e-48
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 163 8e-48
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 161 8e-47
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 162 8e-47
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 159 1e-46
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 162 1e-46
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 159 1e-46
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 162 1e-46
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 158 2e-45
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 162 9e-45
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 162 1e-44
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 162 1e-44
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 162 2e-44
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 161 2e-44
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 154 2e-44
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttatus]
Length = 598
Score = 162 bits (411), Expect(3) = 9e-54
Identities = 84/148 (56%), Positives = 100/148 (67%)
Frame = +1
Query: 157 F*KVKKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVD 336
F K K WK LIENQT K++K R DNG+EFC D C +GI+RHK V +TP QNGV
Sbjct: 251 FDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCANSGIRRHKSVVHTPQQNGVA 310
Query: 337 ERMNRTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVY 516
ERMNRTLLERVR ML + G K F EA+++A YLINRS S+ LNG E VW GK+
Sbjct: 311 ERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGDLPESVWCGKKVDL 370
Query: 517 SNLKVFRCTSYSHIWGDKLDPRSQKCVF 600
SNL VF ++ H GDKL+PR KC+F
Sbjct: 371 SNLHVFGYAAFVHHKGDKLEPRFVKCIF 398
Score = 52.4 bits (124), Expect(3) = 9e-54
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +3
Query: 588 KMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEMPCL 713
K LGYP VKGYRLW++ G+K+I SR+ IF E PCL
Sbjct: 395 KCIFLGYPDGVKGYRLWLKGDFGYKIIISRDVIFNESGFPCL 436
Score = 45.4 bits (106), Expect(3) = 9e-54
Identities = 18/38 (47%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +2
Query: 29 FPSGS-NKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
+PS + ++ + +L Y+H D+WGP+ T+GGN+YFLSI
Sbjct: 194 YPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSI 231
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 166 bits (421), Expect(3) = 1e-49
Identities = 82/148 (55%), Positives = 104/148 (70%)
Frame = +1
Query: 157 F*KVKKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVD 336
F K K+WK L+E QT +K+K R DNGLEF + + C++ GI RH+ V YTP QNG+
Sbjct: 495 FLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLA 554
Query: 337 ERMNRTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVY 516
ERMNRT+LERVRCML++ G SK F EA +A +LINRS S AL KT +E W GK + Y
Sbjct: 555 ERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADY 614
Query: 517 SNLKVFRCTSYSHIWGDKLDPRSQKCVF 600
+LKVF CT+Y H DKL+PR+ KC+F
Sbjct: 615 QHLKVFGCTAYVHTKTDKLEPRAVKCIF 642
Score = 40.0 bits (92), Expect(3) = 1e-49
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F ++T + L Y+H DLWGPS + GG +YFL++
Sbjct: 439 FAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTL 475
Score = 40.0 bits (92), Expect(3) = 1e-49
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW+ + K I SR+ F E +M
Sbjct: 635 PRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDM 677
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 169 bits (427), Expect(3) = 2e-49
Identities = 79/148 (53%), Positives = 106/148 (71%)
Frame = +1
Query: 157 F*KVKKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVD 336
F K K+WK ++E +T K +K R DNGLEFC ++ D FC++ GI RH+ V +TP QNGV
Sbjct: 849 FGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVA 908
Query: 337 ERMNRTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVY 516
ERMN+TL++R RCM G SK F EAV +A YL+NRS S A++ KT +EVW+GK S Y
Sbjct: 909 ERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNY 968
Query: 517 SNLKVFRCTSYSHIWGDKLDPRSQKCVF 600
S LK+F C +Y+H+ KL+PR+ KC+F
Sbjct: 969 SGLKIFGCPAYAHVSDGKLEPRAMKCIF 996
Score = 43.5 bits (101), Expect(3) = 2e-49
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLS 136
F GS+ T+ +L Y+H DLWGPS ++H G +Y+++
Sbjct: 793 FSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVT 828
Score = 33.5 bits (75), Expect(3) = 2e-49
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGY VKGYRLW K I SR+ F E M
Sbjct: 989 PRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM 1031
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 169 bits (427), Expect(3) = 2e-49
Identities = 79/148 (53%), Positives = 106/148 (71%)
Frame = +1
Query: 157 F*KVKKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVD 336
F K K+WK ++E +T K +K R DNGLEFC ++ D FC++ GI RH+ V +TP QNGV
Sbjct: 636 FGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVA 695
Query: 337 ERMNRTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVY 516
ERMN+TL++R RCM G SK F EAV +A YL+NRS S A++ KT +EVW+GK S Y
Sbjct: 696 ERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNY 755
Query: 517 SNLKVFRCTSYSHIWGDKLDPRSQKCVF 600
S LK+F C +Y+H+ KL+PR+ KC+F
Sbjct: 756 SGLKIFGCPAYAHVSDGKLEPRAMKCIF 783
Score = 43.5 bits (101), Expect(3) = 2e-49
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLS 136
F GS+ T+ +L Y+H DLWGPS ++H G +Y+++
Sbjct: 580 FSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVT 615
Score = 33.5 bits (75), Expect(3) = 2e-49
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGY VKGYRLW K I SR+ F E M
Sbjct: 776 PRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM 818
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 170 bits (431), Expect(3) = 3e-48
Identities = 84/148 (56%), Positives = 101/148 (68%)
Frame = +1
Query: 157 F*KVKKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVD 336
F K K+WK L+ENQT KK+K R DNGLEFC D FCK GI RH+ V TP QNGV
Sbjct: 515 FQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVA 574
Query: 337 ERMNRTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVY 516
ERMN+TLLER RCML+ G + F EAV +ACYLINR + KT E+W+GK + Y
Sbjct: 575 ERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADY 634
Query: 517 SNLKVFRCTSYSHIWGDKLDPRSQKCVF 600
SNLK F CT+Y H+ KL+PR++K VF
Sbjct: 635 SNLKAFGCTAYYHVSEGKLEPRAKKGVF 662
Score = 38.9 bits (89), Expect(3) = 3e-48
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
FP ++T L Y+H D WGP ++ GG ++F+SI
Sbjct: 459 FPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSI 495
Score = 32.3 bits (72), Expect(3) = 3e-48
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEMPCLNQNIR 728
P K +GY VKG+R+W S +VI SRN +F DE P L ++
Sbjct: 655 PRAKKGVFVGYGDGVKGFRIW--SPAEKRVIMSRNVVF--DESPLLRTIVK 701
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 163 bits (412), Expect(3) = 8e-48
Identities = 75/144 (52%), Positives = 102/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC + +CK GI RH V +TP QNGV ERMN
Sbjct: 748 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 807
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RC+L+ G K F EAV +ACYLINRS S A++ KT EVW+G + YS+L+
Sbjct: 808 RTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 867
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 868 VFGCTAYAHVDNGKLEPRAIKCIF 891
Score = 38.9 bits (89), Expect(3) = 8e-48
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW KV+ SRN +F E M
Sbjct: 884 PRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVM 924
Score = 38.5 bits (88), Expect(3) = 8e-48
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTI 724
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 163 bits (412), Expect(3) = 8e-48
Identities = 75/144 (52%), Positives = 102/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC + +CK GI RH V +TP QNGV ERMN
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RC+L+ G K F EAV +ACYLINRS S A++ KT EVW+G + YS+L+
Sbjct: 601 RTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 660
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 661 VFGCTAYAHVDNGKLEPRAIKCIF 684
Score = 38.9 bits (89), Expect(3) = 8e-48
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW KV+ SRN +F E M
Sbjct: 677 PRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVM 717
Score = 38.5 bits (88), Expect(3) = 8e-48
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTI 517
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 161 bits (407), Expect(3) = 8e-47
Identities = 73/144 (50%), Positives = 100/144 (69%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC +C+ GI RH V +TP QNGV ERMN
Sbjct: 480 KEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHYTVSHTPQQNGVVERMN 539
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ G + F EA +ACYLINRS S A++ KT E+W+G + YS+LK
Sbjct: 540 RTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIEMWSGSPANYSDLK 599
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 600 VFGCTAYAHVDNGKLEPRAIKCIF 623
Score = 38.9 bits (89), Expect(3) = 8e-47
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ ++ GG +Y ++I
Sbjct: 420 FTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTI 456
Score = 37.0 bits (84), Expect(3) = 8e-47
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VK Y+LW KV+ SRN IF E M
Sbjct: 616 PRAIKCIFLGYPSGVKAYKLWCPETQ--KVVISRNVIFNETVM 656
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 162 bits (409), Expect(3) = 8e-47
Identities = 75/144 (52%), Positives = 101/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC + +CK GI RH V +TP QNGV ERMN
Sbjct: 362 KEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 421
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ G K F EAV +ACYLINRS S A++ KT EVW+ + YS+L+
Sbjct: 422 RTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDLR 481
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 482 VFSCTAYAHVDNGKLEPRAIKCIF 505
Score = 37.7 bits (86), Expect(3) = 8e-47
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW KV+ +RN +F E M
Sbjct: 498 PRAIKCIFLGYPSGVKGYKLWCPETK--KVVINRNVVFHESVM 538
Score = 37.4 bits (85), Expect(3) = 8e-47
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 302 FNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMMTI 338
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 159 bits (403), Expect(3) = 1e-46
Identities = 73/144 (50%), Positives = 101/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG++FC + +CK GI RH V +TP QNGV ERMN
Sbjct: 502 KEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 561
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ G K F EAV +ACYLINRS S A++ KT +VW+G + YS+L+
Sbjct: 562 RTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLR 621
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF C +Y+H+ KL+PR+ KC+F
Sbjct: 622 VFGCIAYAHVDNSKLEPRAIKCIF 645
Score = 38.9 bits (89), Expect(3) = 1e-46
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW KV+ SRN +F E M
Sbjct: 638 PRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVM 678
Score = 37.7 bits (86), Expect(3) = 1e-46
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 442 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTI 478
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 162 bits (411), Expect(3) = 1e-46
Identities = 75/144 (52%), Positives = 101/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC + +CK GI RH V +TP QNGV ERMN
Sbjct: 526 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMN 585
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ G K F EAV +ACYLINRS A++ KT +VW+G + YS+LK
Sbjct: 586 RTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLK 645
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 646 VFGCTAYAHVDNGKLEPRTIKCIF 669
Score = 37.7 bits (86), Expect(3) = 1e-46
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 466 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTI 502
Score = 35.8 bits (81), Expect(3) = 1e-46
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW KV+ SR +F E M
Sbjct: 662 PRTIKCIFLGYPSGVKGYKLWCPETK--KVVISRYVVFHESVM 702
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 159 bits (403), Expect(3) = 1e-46
Identities = 77/144 (53%), Positives = 100/144 (69%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC + +CK GI RH V +TP QNGV ERMN
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
R ++ + RCML+ G K F EAV +ACYLINRS S A N KT EVW+G + YS+LK
Sbjct: 601 RIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPANYSDLK 659
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 660 VFGCTAYAHVDNGKLEPRAIKCIF 683
Score = 38.9 bits (89), Expect(3) = 1e-46
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP +VKGY+LW KV+ SRN +F E M
Sbjct: 676 PRAIKCIFLGYPSSVKGYKLWCPETK--KVVISRNVVFHESIM 716
Score = 37.7 bits (86), Expect(3) = 1e-46
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTI 517
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 162 bits (411), Expect(3) = 1e-46
Identities = 75/144 (52%), Positives = 101/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+EFC + +CK GI RH V +TP QNGV ERMN
Sbjct: 358 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMN 417
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ G K F EAV +ACYLINRS A++ KT +VW+G + YS+LK
Sbjct: 418 RTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLK 477
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 478 VFGCTAYAHVDNGKLEPRTIKCIF 501
Score = 37.7 bits (86), Expect(3) = 1e-46
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 298 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTI 334
Score = 35.8 bits (81), Expect(3) = 1e-46
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGYP VKGY+LW KV+ SR +F E M
Sbjct: 494 PRTIKCIFLGYPSGVKGYKLWCPETK--KVVISRYVVFHESVM 534
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 158 bits (400), Expect(3) = 2e-45
Identities = 74/144 (51%), Positives = 99/144 (68%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT +K+K R DNG+E C + +CK GI RH V +TP QNGV ERMN
Sbjct: 450 KEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 509
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ K F EAV +ACYLINRS S A++ KT EVW+G + YS+L+
Sbjct: 510 RTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 569
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR KC+F
Sbjct: 570 VFGCTAYAHVDNGKLEPRVIKCIF 593
Score = 37.7 bits (86), Expect(3) = 2e-45
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTI 426
Score = 36.2 bits (82), Expect(3) = 2e-45
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P V K LGY VKGY+LW KV+ SRN +F E M
Sbjct: 586 PRVIKCIFLGYLSGVKGYKLWCPETK--KVVISRNVVFHESIM 626
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 162 bits (409), Expect(3) = 9e-45
Identities = 80/146 (54%), Positives = 103/146 (70%)
Frame = +1
Query: 163 KVKKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDER 342
K K WK L+ENQ+ KLKC R DNGLEFC + + +C+++GIKRHK V +TP QNG+ ER
Sbjct: 529 KFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAER 588
Query: 343 MNRTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSN 522
MNRTL+++ RCML +SF EAV +A YL+NRS S A+ KT EE+WNGK + Y N
Sbjct: 589 MNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQN 648
Query: 523 LKVFRCTSYSHIWGDKLDPRSQKCVF 600
L+VF C +Y HI KL+ R+ K VF
Sbjct: 649 LRVFGCPAYLHINQGKLEARALKGVF 674
Score = 36.2 bits (82), Expect(3) = 9e-45
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F G + + +L Y H+D WGP+ + G +YF+S+
Sbjct: 471 FNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSL 507
Score = 32.0 bits (71), Expect(3) = 9e-45
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 600 LGYPGNVKGYRLWVRSLPGFKVITSRNFIFKE 695
+GYP VKGY++W + K I SR+ +F E
Sbjct: 675 VGYPDGVKGYKIWCKDQG--KCIVSRDVVFHE 704
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 162 bits (409), Expect(3) = 1e-44
Identities = 77/144 (53%), Positives = 99/144 (68%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K WK +IE QT +K+K R DNG EFC + +C+Q GI RH + +TP QNGV ERMN
Sbjct: 533 KNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMN 592
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ R RCML+ +K F EA +ACYLINRS S+ LN KT EVW+G + YS LK
Sbjct: 593 RTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLK 652
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 653 VFGCTAYAHVDNGKLEPRAVKCLF 676
Score = 37.7 bits (86), Expect(3) = 1e-44
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + + T L YVH DLWGPS + GG +Y L+I
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTI 509
Score = 30.0 bits (66), Expect(3) = 1e-44
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGY VKGY+LW + K SR+ +F E M
Sbjct: 669 PRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVM 709
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 162 bits (409), Expect(3) = 1e-44
Identities = 77/144 (53%), Positives = 99/144 (68%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K WK +IE QT +K+K R DNG EFC + +C+Q GI RH + +TP QNGV ERMN
Sbjct: 533 KNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMN 592
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ R RCML+ +K F EA +ACYLINRS S+ LN KT EVW+G + YS LK
Sbjct: 593 RTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLK 652
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 653 VFGCTAYAHVDNGKLEPRAVKCLF 676
Score = 37.7 bits (86), Expect(3) = 1e-44
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + + T L YVH DLWGPS + GG +Y L+I
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTI 509
Score = 30.0 bits (66), Expect(3) = 1e-44
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGY VKGY+LW + K SR+ +F E M
Sbjct: 669 PRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVM 709
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 162 bits (409), Expect(3) = 2e-44
Identities = 77/144 (53%), Positives = 99/144 (68%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K WK +IE QT +K+K R DNG EFC + +C+Q GI RH + +TP QNGV ERMN
Sbjct: 533 KNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMN 592
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ R RCML+ +K F EA +ACYLINRS S+ LN KT EVW+G + YS LK
Sbjct: 593 RTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLK 652
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 653 VFGCTAYAHVDNGKLEPRAVKCLF 676
Score = 37.4 bits (85), Expect(3) = 2e-44
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + + T L YVH DLWGPS + GG +Y L++
Sbjct: 473 FNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTV 509
Score = 30.0 bits (66), Expect(3) = 2e-44
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGY VKGY+LW + K SR+ +F E M
Sbjct: 669 PRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVM 709
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 161 bits (407), Expect(3) = 2e-44
Identities = 74/144 (51%), Positives = 101/144 (70%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK +IE QT K++K R DN EFC + D +C++ GI RH + YTP QNGV ERMN
Sbjct: 534 KEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMN 593
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
RT++ + RCML+ +K F EA +ACYLINRS S+ LN KT E+W+G + YS L+
Sbjct: 594 RTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLR 653
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ +KL+PR+ KC+F
Sbjct: 654 VFGCTAYAHVDNEKLEPRAIKCLF 677
Score = 39.7 bits (91), Expect(3) = 2e-44
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++T +L YVH DLWGPS + GG +Y L+I
Sbjct: 474 FNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTI 510
Score = 28.5 bits (62), Expect(3) = 2e-44
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKEDEM 704
P K LGY VKGY+LW + K SR+ +F E M
Sbjct: 670 PRAIKCLFLGYGLGVKGYKLW--NPETNKTFMSRSVVFNESVM 710
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 154 bits (388), Expect(3) = 2e-44
Identities = 72/144 (50%), Positives = 96/144 (66%)
Frame = +1
Query: 169 KKWKFLIENQTRKKLKCFRIDNGLEFCIENLDVFCKQNGIKRHKIVFYTP*QNGVDERMN 348
K+WK ++E QT KK+K R DNG+EFC + +CK GI H V +TP QNGV ERMN
Sbjct: 576 KEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMN 635
Query: 349 RTLLERVRCMLATFGFSKSFLREAVVSACYLINRSSSVALNGKTNEEVWNGKQSVYSNLK 528
++ + RCML+ K F EAV + CYLINRS S A + KT EVW+G + YS+L+
Sbjct: 636 MAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLR 695
Query: 529 VFRCTSYSHIWGDKLDPRSQKCVF 600
VF CT+Y+H+ KL+PR+ KC+F
Sbjct: 696 VFGCTAYAHVDNGKLEPRAIKCIF 719
Score = 37.7 bits (86), Expect(3) = 2e-44
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 576 P*VSKMCVLGYPGNVKGYRLWVRSLPGFKVITSRNFIFKE 695
P K LGYP VKGY+LW KV+ SRN +F E
Sbjct: 712 PRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHE 749
Score = 37.4 bits (85), Expect(3) = 2e-44
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 29 FPSGSNKTSSML*YVHVDLWGPSGTQTHGGNKYFLSI 139
F + ++ T +L YVH DLWGP+ + GG +Y ++I
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTI 552