BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00001311
         (2668 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF,...   581   e-163
ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   581   e-163
ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF,...   543   e-151
emb|CDP06761.1| unnamed protein product [Coffea canephora]            542   e-151
ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF,...   540   e-150
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   536   e-149
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              536   e-149
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   531   e-147
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   529   e-147
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   528   e-146
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,...   528   e-146
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     527   e-146
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   527   e-146
ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF,...   527   e-146
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   527   e-146
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   526   e-146
ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF,...   524   e-145
gb|AKC88774.1| sigma factor [Melianthus villosus]                     523   e-145
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   523   e-145
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   523   e-145

>ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Sesamum indicum] gi|747093636|ref|XP_011094633.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X2 [Sesamum indicum]
          Length = 496

 Score =  581 bits (1498), Expect = e-163
 Identities = 294/373 (78%), Positives = 326/373 (87%)
 Frame = -1

Query: 1444 RGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDP 1265
            R L   P Q  RTVRSTRL+ERQ KRRR+PK  IEVQE NH  + E QRK  +GFDPNDP
Sbjct: 126  RSLTGVPAQ--RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDPNDP 183

Query: 1264 LRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSC 1085
            LRLFL  PETR+LLT+K+ESELIVKIQELMRL+E+K RL+ QFSREPTL EWA A G+SC
Sbjct: 184  LRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAGISC 243

Query: 1084 QSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQ 905
            Q+LQS +HCG SSR+KLI ANFRMVVHIAKQYQGRGLSLQDLLQEGS GLMRSVEKFKPQ
Sbjct: 244  QALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKFKPQ 303

Query: 904  VGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEE 725
             GCRFATYAYWWIRQ+IRKA+FQHSRTIRLPENVY LLS+V EAKK+CIQ GNH P KE+
Sbjct: 304  AGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPTKED 363

Query: 724  IAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRR 545
            IAA AG++VE L+RLL+TARMPLS+Q+PVW DQ TTFQEITAD T+EVPDV V+KQLMR+
Sbjct: 364  IAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQLMRQ 423

Query: 544  HIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCL 365
            HIRNLLSVLSP+ERKIIRLRFGIE   QKSLSEIG  FGLSKERVRQLESRALYKLKQCL
Sbjct: 424  HIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCL 483

Query: 364  DNHGLGAYSDMII 326
             +HGL AY++MII
Sbjct: 484  GSHGLAAYANMII 496


>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 561

 Score =  581 bits (1498), Expect = e-163
 Identities = 294/373 (78%), Positives = 326/373 (87%)
 Frame = -1

Query: 1444 RGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDP 1265
            R L   P Q  RTVRSTRL+ERQ KRRR+PK  IEVQE NH  + E QRK  +GFDPNDP
Sbjct: 191  RSLTGVPAQ--RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEGFDPNDP 248

Query: 1264 LRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSC 1085
            LRLFL  PETR+LLT+K+ESELIVKIQELMRL+E+K RL+ QFSREPTL EWA A G+SC
Sbjct: 249  LRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAGISC 308

Query: 1084 QSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQ 905
            Q+LQS +HCG SSR+KLI ANFRMVVHIAKQYQGRGLSLQDLLQEGS GLMRSVEKFKPQ
Sbjct: 309  QALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKFKPQ 368

Query: 904  VGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEE 725
             GCRFATYAYWWIRQ+IRKA+FQHSRTIRLPENVY LLS+V EAKK+CIQ GNH P KE+
Sbjct: 369  AGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPTKED 428

Query: 724  IAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRR 545
            IAA AG++VE L+RLL+TARMPLS+Q+PVW DQ TTFQEITAD T+EVPDV V+KQLMR+
Sbjct: 429  IAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQLMRQ 488

Query: 544  HIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCL 365
            HIRNLLSVLSP+ERKIIRLRFGIE   QKSLSEIG  FGLSKERVRQLESRALYKLKQCL
Sbjct: 489  HIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLKQCL 548

Query: 364  DNHGLGAYSDMII 326
             +HGL AY++MII
Sbjct: 549  GSHGLAAYANMII 561


>ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Erythranthe guttatus] gi|604329105|gb|EYU34473.1|
            hypothetical protein MIMGU_mgv1a003862mg [Erythranthe
            guttata]
          Length = 559

 Score =  543 bits (1399), Expect = e-151
 Identities = 276/381 (72%), Positives = 323/381 (84%)
 Frame = -1

Query: 1468 NSSSCWLSRGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIG 1289
            NSSS   +R LV +PVQ  R VRS R LERQ KRR  PK  +E QE NH  + E  +K  
Sbjct: 185  NSSS---TRSLVGSPVQ--RIVRSKRRLERQAKRRA-PKPQLEDQEMNHRRKLEPHKKSS 238

Query: 1288 QGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEW 1109
            +G+DPNDPLRLFL  PET +LL+AK+E++LI KIQELM+L+EV+ RLQTQFSREPTL EW
Sbjct: 239  EGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEW 298

Query: 1108 AEAVGVSCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMR 929
            A AVG+S Q+LQ  ++CG  SREKLIYANFR+VV+IAKQYQGRGL+LQDLLQ GS GLM+
Sbjct: 299  AAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMK 358

Query: 928  SVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNG 749
            SVEKFKP VGCRFATYAYWWIRQ+IRK++FQHSRTIRLPENVY LLSKV EAKK CI+ G
Sbjct: 359  SVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQG 418

Query: 748  NHRPMKEEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVS 569
            NH+P KE+IAA AG++VEKLDRLL+T+R+PLSMQ+PVWMDQ TTFQEITAD  VE PDV 
Sbjct: 419  NHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVG 478

Query: 568  VSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRA 389
             SKQ+MR+H RNLLSVL+P+ERKIIRLRFGIED  QKSLS+IG  FGLSKER+RQ+ESRA
Sbjct: 479  ASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRA 538

Query: 388  LYKLKQCLDNHGLGAYSDMII 326
            LYKLKQCL +HGL AY++M++
Sbjct: 539  LYKLKQCLSSHGLSAYAEMLV 559


>emb|CDP06761.1| unnamed protein product [Coffea canephora]
          Length = 556

 Score =  542 bits (1397), Expect = e-151
 Identities = 274/364 (75%), Positives = 313/364 (85%)
 Frame = -1

Query: 1417 DKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDPLRLFLGEPE 1238
            +K+TV STRLL+RQ K+RR+PK  +EV++   P R  +QRK    FD  DPLR+FL  PE
Sbjct: 197  EKKTVHSTRLLQRQPKKRRVPKPKVEVEDTRPPVRPNLQRK---AFDLIDPLRVFLSGPE 253

Query: 1237 TRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSCQSLQSHLHC 1058
            T KLLT  +ESELI KIQ+ M+ EEVK RLQ+QF+REPTL EWAEA G+SC++LQ+ LH 
Sbjct: 254  T-KLLTVDEESELIGKIQDWMKQEEVKSRLQSQFNREPTLVEWAEAAGLSCRALQTQLHS 312

Query: 1057 GKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQVGCRFATYA 878
            G  SREKLIYAN RMVVHIA+QY GRGLSLQDLLQEGS GLMRS+EKFKPQVGCRFATYA
Sbjct: 313  GNRSREKLIYANHRMVVHIARQYMGRGLSLQDLLQEGSMGLMRSIEKFKPQVGCRFATYA 372

Query: 877  YWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEEIAATAGITV 698
            YWWIRQAIRKAIFQHSRTIRLP+NVYGLLSKV+EAKK+CIQ G H P KEEIA+ AGITV
Sbjct: 373  YWWIRQAIRKAIFQHSRTIRLPDNVYGLLSKVKEAKKLCIQQGIHSPTKEEIASCAGITV 432

Query: 697  EKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRRHIRNLLSVL 518
            EKL++LLFTARMPLSMQQPVWMDQ TTFQE+TAD  +E  D+SVSKQLMR HIRNLL +L
Sbjct: 433  EKLEKLLFTARMPLSMQQPVWMDQDTTFQEVTADTAIEASDLSVSKQLMRIHIRNLLRIL 492

Query: 517  SPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCLDNHGLGAYS 338
            +PKERKIIRLRFGIED  QKSLSEIG +FGLSKERVRQLE+RALYKLKQCL++ GL AY+
Sbjct: 493  NPKERKIIRLRFGIEDGKQKSLSEIGAVFGLSKERVRQLETRALYKLKQCLNSQGLNAYA 552

Query: 337  DMII 326
            DM++
Sbjct: 553  DMLL 556


>ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Erythranthe guttatus]
          Length = 558

 Score =  540 bits (1392), Expect = e-150
 Identities = 272/374 (72%), Positives = 318/374 (85%)
 Frame = -1

Query: 1447 SRGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPND 1268
            S  LV +PVQ  R VRS R LERQ KRR  PK  +E QE NH  + E  +K  +G+DPND
Sbjct: 188  STSLVGSPVQ--RIVRSKRRLERQAKRRA-PKPQLEDQEMNHRRKLEPHKKSSEGYDPND 244

Query: 1267 PLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVS 1088
            PLRLFL  PET +LL+AK+E++LI KIQELM+L+EV+ RLQTQFSREPTL EWA AVG+S
Sbjct: 245  PLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGIS 304

Query: 1087 CQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKP 908
             Q+LQ  ++CG  SREKLIYANFR+VV+IAKQYQGRGL+LQDLLQ GS GLM+SVEKFKP
Sbjct: 305  TQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKP 364

Query: 907  QVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKE 728
             VGCRFATYAYWWIRQ+IRK++FQHSRTIRLPENVY LLSKV EAKK CI+ GNH+P KE
Sbjct: 365  LVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKE 424

Query: 727  EIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMR 548
            +IAA AG++VEKLDRLL+T+R+PLSMQ+PVWMDQ TTFQEITAD  VE PDV  SKQ+MR
Sbjct: 425  DIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGASKQIMR 484

Query: 547  RHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQC 368
            +H RNLLSVL+P+ERKIIRLRFGIED  QKSLS+IG  FGLSKER+RQ+ESRALYKLKQC
Sbjct: 485  QHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRALYKLKQC 544

Query: 367  LDNHGLGAYSDMII 326
            L +HGL AY++M++
Sbjct: 545  LSSHGLSAYAEMLV 558


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  536 bits (1381), Expect = e-149
 Identities = 269/369 (72%), Positives = 313/369 (84%)
 Frame = -1

Query: 1432 NTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDPLRLF 1253
            N P+++K TVRSTRLLER++K+RR PK  + V EN+   R+EVQRKI +G+DP DPLRLF
Sbjct: 202  NLPLEEK-TVRSTRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKINEGYDPKDPLRLF 258

Query: 1252 LGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSCQSLQ 1073
            L  PETRKLLTAK+ESELIV+IQELMRLEEVK RLQ+   REPT+ EWAEAVG+SCQ LQ
Sbjct: 259  LWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQ 318

Query: 1072 SHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQVGCR 893
            S LH G  SR+KLIYAN RMVVHIAKQYQGRGL+LQDLLQEGS GLM SVEKFKP  GCR
Sbjct: 319  SQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCR 378

Query: 892  FATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEEIAAT 713
            FA+YAYWWIRQA+RKAIFQHSRTIRLPEN+Y LL KV+EAK++ IQ G+H P KEEIA  
Sbjct: 379  FASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAER 438

Query: 712  AGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRRHIRN 533
             GIT+EKL RLL   RMPLSMQQPVW DQ TTFQE+TAD  +E+PDVSV+KQLMR+H+RN
Sbjct: 439  VGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRN 498

Query: 532  LLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCLDNHG 353
            LL VL+PKER+IIRLRFGI D   ++LSEIG +FG SKERVRQLE RAL+KLKQCL +HG
Sbjct: 499  LLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHG 558

Query: 352  LGAYSDMII 326
            L +Y+D+++
Sbjct: 559  LESYTDLLV 567


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  536 bits (1381), Expect = e-149
 Identities = 269/369 (72%), Positives = 313/369 (84%)
 Frame = -1

Query: 1432 NTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDPLRLF 1253
            N P+++K TVRSTRLLER++K+RR PK  + V EN+   R+EVQRKI +G+DP DPLRLF
Sbjct: 196  NLPLEEK-TVRSTRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKINEGYDPKDPLRLF 252

Query: 1252 LGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSCQSLQ 1073
            L  PETRKLLTAK+ESELIV+IQELMRLEEVK RLQ+   REPT+ EWAEAVG+SCQ LQ
Sbjct: 253  LWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQ 312

Query: 1072 SHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQVGCR 893
            S LH G  SR+KLIYAN RMVVHIAKQYQGRGL+LQDLLQEGS GLM SVEKFKP  GCR
Sbjct: 313  SQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCR 372

Query: 892  FATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEEIAAT 713
            FA+YAYWWIRQA+RKAIFQHSRTIRLPEN+Y LL KV+EAK++ IQ G+H P KEEIA  
Sbjct: 373  FASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAER 432

Query: 712  AGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRRHIRN 533
             GIT+EKL RLL   RMPLSMQQPVW DQ TTFQE+TAD  +E+PDVSV+KQLMR+H+RN
Sbjct: 433  VGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRN 492

Query: 532  LLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCLDNHG 353
            LL VL+PKER+IIRLRFGI D   ++LSEIG +FG SKERVRQLE RAL+KLKQCL +HG
Sbjct: 493  LLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHG 552

Query: 352  LGAYSDMII 326
            L +Y+D+++
Sbjct: 553  LESYTDLLV 561


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  531 bits (1368), Expect = e-147
 Identities = 265/374 (70%), Positives = 314/374 (83%), Gaps = 3/374 (0%)
 Frame = -1

Query: 1438 LVNTPVQDKRTVRSTRLLERQTKR---RRLPKSNIEVQENNHPGRSEVQRKIGQGFDPND 1268
            L N  V++++TVRSTR+LER+ KR   R++PKS +   E+N    S+V++KI +GF+PND
Sbjct: 195  LANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPND 254

Query: 1267 PLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVS 1088
            PLRLFL  PETR+LLTAK+E+ELI ++Q+L +LEEVK RLQTQF REPTL EWAEAVG+S
Sbjct: 255  PLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGIS 314

Query: 1087 CQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKP 908
            CQ L+S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQDL+QEGS GLM+SVEKFKP
Sbjct: 315  CQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKP 374

Query: 907  QVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKE 728
            Q GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV EAKK CIQ GNH P KE
Sbjct: 375  QAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKE 434

Query: 727  EIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMR 548
            E+A   GITVEKL++LL+  RMPLSMQQPVW DQ TTFQE+TAD  VE+PDVSV+KQLMR
Sbjct: 435  ELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMR 494

Query: 547  RHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQC 368
            +H+R+LLS+L+ +ER+IIRLR+GIED  Q+SLSEIG +FGLSKERVRQLESRA  KL+Q 
Sbjct: 495  QHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQS 554

Query: 367  LDNHGLGAYSDMII 326
            L + GLGAY  +++
Sbjct: 555  LGSQGLGAYGPLLV 568


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  529 bits (1363), Expect = e-147
 Identities = 265/374 (70%), Positives = 313/374 (83%), Gaps = 3/374 (0%)
 Frame = -1

Query: 1438 LVNTPVQDKRTVRSTRLLERQTKR---RRLPKSNIEVQENNHPGRSEVQRKIGQGFDPND 1268
            L N  V++++TVRSTR+LER+ KR   R++PKS +   E+N    S+V +KI +GF+PND
Sbjct: 200  LDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHESNSFTSSDVPKKISEGFNPND 259

Query: 1267 PLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVS 1088
            PLRLFL  PETR+LLTAK+E+ELI ++Q+L +LEEVK RLQTQF REPTL EWAEAVG+S
Sbjct: 260  PLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGIS 319

Query: 1087 CQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKP 908
            CQ L+S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQDL+QEGS GLM+SVEKFKP
Sbjct: 320  CQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKP 379

Query: 907  QVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKE 728
            Q GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV EAKK CIQ GNH P KE
Sbjct: 380  QAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKE 439

Query: 727  EIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMR 548
            E+A   GITVEKL++LL+  RMPLSMQQPVW DQ TTFQE+TAD  VE+PDVSV+KQLMR
Sbjct: 440  ELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMR 499

Query: 547  RHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQC 368
            +H+R+LLS+L+ +ER+IIRLR+GIED  Q+SLSEIG +FGLSKERVRQLESRA  KL+Q 
Sbjct: 500  QHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQS 559

Query: 367  LDNHGLGAYSDMII 326
            L + GLGAY  +++
Sbjct: 560  LGSQGLGAYGPLLV 573


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  528 bits (1359), Expect = e-146
 Identities = 266/378 (70%), Positives = 312/378 (82%), Gaps = 3/378 (0%)
 Frame = -1

Query: 1450 LSRGLVNTPVQDKRTVRSTRLLERQTKR---RRLPKSNIEVQENNHPGRSEVQRKIGQGF 1280
            LS GL N  V+D++TVRSTRLLER+ KR   +R+ KS + + E N P  S+V+RKI +GF
Sbjct: 196  LSIGLDNWLVEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGF 255

Query: 1279 DPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEA 1100
            + NDPLRLFL  PET++LLTA++E+ELI ++Q+L +LEEVK RLQ+QF REPTL EWAEA
Sbjct: 256  NQNDPLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEA 315

Query: 1099 VGVSCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVE 920
            VG+SCQ L+S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQDL+QEGS GLM+SVE
Sbjct: 316  VGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVE 375

Query: 919  KFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHR 740
            KFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV EAKK CIQ GNH 
Sbjct: 376  KFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHN 435

Query: 739  PMKEEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSK 560
            P KEE+A   GITVEKL +LL++ RMPLSMQQPVW DQ +TFQEITAD   E+P VSV K
Sbjct: 436  PNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEK 495

Query: 559  QLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYK 380
            QLMR+H+R+LL +L+ +ER+IIRLRFGIED  Q+SLSEIG +FGLSKERVRQLESRA  K
Sbjct: 496  QLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLK 555

Query: 379  LKQCLDNHGLGAYSDMII 326
            LKQ L + GLGAY  +++
Sbjct: 556  LKQSLGSQGLGAYGPLLV 573


>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Pyrus x bretschneideri]
          Length = 610

 Score =  528 bits (1359), Expect = e-146
 Identities = 266/378 (70%), Positives = 312/378 (82%), Gaps = 3/378 (0%)
 Frame = -1

Query: 1450 LSRGLVNTPVQDKRTVRSTRLLERQTKR---RRLPKSNIEVQENNHPGRSEVQRKIGQGF 1280
            LS GL N  V+D++TVRSTRLLER+ KR   +R+ KS + + E N P  S+V+RKI +GF
Sbjct: 233  LSIGLDNWLVEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGF 292

Query: 1279 DPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEA 1100
            + NDPLRLFL  PET++LLTA++E+ELI ++Q+L +LEEVK RLQ+QF REPTL EWAEA
Sbjct: 293  NQNDPLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEA 352

Query: 1099 VGVSCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVE 920
            VG+SCQ L+S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQDL+QEGS GLM+SVE
Sbjct: 353  VGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVE 412

Query: 919  KFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHR 740
            KFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV EAKK CIQ GNH 
Sbjct: 413  KFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHN 472

Query: 739  PMKEEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSK 560
            P KEE+A   GITVEKL +LL++ RMPLSMQQPVW DQ +TFQEITAD   E+P VSV K
Sbjct: 473  PNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEK 532

Query: 559  QLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYK 380
            QLMR+H+R+LL +L+ +ER+IIRLRFGIED  Q+SLSEIG +FGLSKERVRQLESRA  K
Sbjct: 533  QLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLK 592

Query: 379  LKQCLDNHGLGAYSDMII 326
            LKQ L + GLGAY  +++
Sbjct: 593  LKQSLGSQGLGAYGPLLV 610


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  527 bits (1358), Expect = e-146
 Identities = 263/371 (70%), Positives = 307/371 (82%)
 Frame = -1

Query: 1438 LVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDPLR 1259
            LV+ P+   R VRSTRLLER++K+R +PK  + V E  H  R++++RK  +GFDPNDPLR
Sbjct: 182  LVSVPLDKVRIVRSTRLLERRSKKR-VPK--VGVHETFHSRRTDIKRKSSEGFDPNDPLR 238

Query: 1258 LFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSCQS 1079
            +FL  PET++LLTAK+E ELI  IQ++M+LEEVK RL +QF  EPTL EWAEA G+SC+ 
Sbjct: 239  MFLWGPETKQLLTAKEEFELIDHIQDMMKLEEVKSRLLSQFGHEPTLIEWAEAAGISCRV 298

Query: 1078 LQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQVG 899
            LQS L     SREKLI AN RMVVHIAKQY G+GLS  DLLQEGS GLM+SVEKFKPQ G
Sbjct: 299  LQSQLRTANKSREKLINANLRMVVHIAKQYLGKGLSFPDLLQEGSMGLMKSVEKFKPQAG 358

Query: 898  CRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEEIA 719
            CRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV EAKK CIQ GNHRP KEE+A
Sbjct: 359  CRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHRPTKEELA 418

Query: 718  ATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRRHI 539
               GITVEKL++LL+T RMPLSMQQPVW  Q TTFQEI AD  +E+PD+SV KQ+MR+H+
Sbjct: 419  RRVGITVEKLEKLLYTTRMPLSMQQPVWAGQDTTFQEIIADTEIEIPDISVGKQMMRQHV 478

Query: 538  RNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCLDN 359
            RNLLS+LSPKER+IIRLRFGIED  QKSLSEIG +FGLSKERVRQLESRALY+LKQCL +
Sbjct: 479  RNLLSILSPKERRIIRLRFGIEDGKQKSLSEIGAVFGLSKERVRQLESRALYRLKQCLSS 538

Query: 358  HGLGAYSDMII 326
             GLGAY+D+++
Sbjct: 539  QGLGAYTDLLV 549


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  527 bits (1358), Expect = e-146
 Identities = 264/378 (69%), Positives = 311/378 (82%), Gaps = 3/378 (0%)
 Frame = -1

Query: 1450 LSRGLVNTPVQDKRTVRSTRLLERQTKR---RRLPKSNIEVQENNHPGRSEVQRKIGQGF 1280
            +S GL N  V+D++TVRS RLLER+ +R   +R+ KS + + E N P  S+V++KI +G 
Sbjct: 194  VSEGLDNWLVEDEKTVRSARLLERRRRRLKKKRVSKSKVLIHETNGPTSSDVRKKINEGL 253

Query: 1279 DPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEA 1100
            +PNDPLRLFL  PET++LLTAK+E+ELI ++Q+L +LEEVK RLQ+QF REPTL EWAEA
Sbjct: 254  NPNDPLRLFLWGPETKQLLTAKEEAELIAQVQDLFKLEEVKSRLQSQFGREPTLVEWAEA 313

Query: 1099 VGVSCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVE 920
            VG+SCQ L+S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQDL+QEGS GLM+SVE
Sbjct: 314  VGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVE 373

Query: 919  KFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHR 740
            KFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV EAKK CIQ GNH 
Sbjct: 374  KFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHN 433

Query: 739  PMKEEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSK 560
            P KEE+A   GITVEKL +LL++ RMPLSMQQPVW DQ TTFQEITAD   E+P VSV K
Sbjct: 434  PNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDTTFQEITADTGTEIPHVSVEK 493

Query: 559  QLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYK 380
            QLMR+H+R+LL +L+ +ER+IIRLRFGIED  Q+SLSEIG +FGLSKERVRQLESRA  K
Sbjct: 494  QLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGLSKERVRQLESRAFLK 553

Query: 379  LKQCLDNHGLGAYSDMII 326
            LKQ L + GLGAY  +++
Sbjct: 554  LKQSLGSQGLGAYGPLLV 571


>ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nicotiana sylvestris]
          Length = 545

 Score =  527 bits (1357), Expect = e-146
 Identities = 264/374 (70%), Positives = 309/374 (82%)
 Frame = -1

Query: 1450 LSRGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPN 1271
            LS  L +  ++D+R  RSTRLLER++K+R  P S  +VQE N   R +V+R++ +  D N
Sbjct: 171  LSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLN 230

Query: 1270 DPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGV 1091
            DPLR+FL  PETR+LLT K+ESELIVKIQ  M+L+EVK RLQTQF REPTL EWAEA G+
Sbjct: 231  DPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGL 290

Query: 1090 SCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFK 911
            + + LQS L  GKSSR+KLI AN RMVVHIAKQYQGRGLSLQDLLQEGS GLM+SVEKFK
Sbjct: 291  TSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFK 350

Query: 910  PQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMK 731
            PQ GCRF TYAYWWIRQ +RKAIFQHSRTIRLPENVY LLSKV++AKK+CIQ GNH P +
Sbjct: 351  PQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTR 410

Query: 730  EEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLM 551
            E+IA+ AG++VE+L  LL  AR PLSMQQ VW DQ  TFQEITAD  +E P++SVSKQLM
Sbjct: 411  EDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLM 470

Query: 550  RRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQ 371
            RRH+RNLL+VLSPKERKIIRLRFGI D  +KSLSEIG +FGLSKERVRQLESRALY+LKQ
Sbjct: 471  RRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQ 530

Query: 370  CLDNHGLGAYSDMI 329
             L +HGL AY+D++
Sbjct: 531  NLSSHGLDAYNDLL 544


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
          Length = 572

 Score =  527 bits (1357), Expect = e-146
 Identities = 264/374 (70%), Positives = 309/374 (82%)
 Frame = -1

Query: 1450 LSRGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPN 1271
            LS  L +  ++D+R  RSTRLLER++K+R  P S  +VQE N   R +V+R++ +  D N
Sbjct: 198  LSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVNESIDLN 257

Query: 1270 DPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGV 1091
            DPLR+FL  PETR+LLT K+ESELIVKIQ  M+L+EVK RLQTQF REPTL EWAEA G+
Sbjct: 258  DPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGL 317

Query: 1090 SCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFK 911
            + + LQS L  GKSSR+KLI AN RMVVHIAKQYQGRGLSLQDLLQEGS GLM+SVEKFK
Sbjct: 318  TSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFK 377

Query: 910  PQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMK 731
            PQ GCRF TYAYWWIRQ +RKAIFQHSRTIRLPENVY LLSKV++AKK+CIQ GNH P +
Sbjct: 378  PQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTR 437

Query: 730  EEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLM 551
            E+IA+ AG++VE+L  LL  AR PLSMQQ VW DQ  TFQEITAD  +E P++SVSKQLM
Sbjct: 438  EDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLM 497

Query: 550  RRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQ 371
            RRH+RNLL+VLSPKERKIIRLRFGI D  +KSLSEIG +FGLSKERVRQLESRALY+LKQ
Sbjct: 498  RRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQ 557

Query: 370  CLDNHGLGAYSDMI 329
             L +HGL AY+D++
Sbjct: 558  NLSSHGLDAYNDLL 571


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  526 bits (1354), Expect = e-146
 Identities = 269/403 (66%), Positives = 326/403 (80%), Gaps = 2/403 (0%)
 Frame = -1

Query: 1528 LSEIYSISLFSKISYRIDI*NSSSCWLSRGLVNTPVQDKR--TVRSTRLLERQTKRRRLP 1355
            LSE   + L   +S  +   +++SC L       PV+ +   TVRSTR LERQ+KRRR+ 
Sbjct: 176  LSEDLKLDLDDSLSNSLG--SANSCTL-------PVEKEEVVTVRSTRRLERQSKRRRV- 225

Query: 1354 KSNIEVQENNHPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELM 1175
            +  + ++E     R++V+RK+ +GFDPNDPLRLFL  PET++LLTAK+ESEL  ++Q LM
Sbjct: 226  QPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLM 285

Query: 1174 RLEEVKCRLQTQFSREPTLSEWAEAVGVSCQSLQSHLHCGKSSREKLIYANFRMVVHIAK 995
            RLE+VK +LQ+QF REPTL EWAEA+G+ C +LQ+ LH G SSR+KLIYAN RMVVHIAK
Sbjct: 286  RLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAK 345

Query: 994  QYQGRGLSLQDLLQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRL 815
            QYQ RGLSLQDLLQEGS GLM+SVE+FKPQVGCRFATYAYWWIRQ IRK+I QHSRT+RL
Sbjct: 346  QYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRL 405

Query: 814  PENVYGLLSKVREAKKVCIQNGNHRPMKEEIAATAGITVEKLDRLLFTARMPLSMQQPVW 635
            PENV+ LLSKV +AKK  I+ GNH P KEE+A   GITVEKLD+LLFT RMPLSMQQ VW
Sbjct: 406  PENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVW 465

Query: 634  MDQSTTFQEITADPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKS 455
            +DQ  TFQE+T D  +E+PDVSV+KQLMR+H+RNLLSVLSP+ER II+LRFGIE+  + S
Sbjct: 466  VDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENS 525

Query: 454  LSEIGTIFGLSKERVRQLESRALYKLKQCLDNHGLGAYSDMII 326
            LSEIG +FGLSKERVRQLESRALYKLKQCL+ HGLGAY D+++
Sbjct: 526  LSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 544

 Score =  524 bits (1349), Expect = e-145
 Identities = 263/374 (70%), Positives = 309/374 (82%)
 Frame = -1

Query: 1450 LSRGLVNTPVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPN 1271
            LS  L +  ++D++TVRSTR LER++KRR +P    +VQE N   R +V+R++ +  D N
Sbjct: 170  LSTNLTDDKLKDQKTVRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRRRVKESIDLN 229

Query: 1270 DPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGV 1091
            DPLR+FL  PET++LLT K+ESELIVKIQ  M+L+EVK RLQTQF REPTL EWAEA G+
Sbjct: 230  DPLRMFLWGPETKQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGL 289

Query: 1090 SCQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFK 911
            + + LQS L  GKSSR+KLI AN RMVVHIAKQYQGRGLSLQDLLQEGS GLM+SVEKFK
Sbjct: 290  TSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFK 349

Query: 910  PQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMK 731
            PQ GCRF TYAYWWIRQ +RK IFQHSRTIRLPENVY LLSKV++AKK+CIQ GN  P +
Sbjct: 350  PQAGCRFPTYAYWWIRQGVRKTIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNRHPTR 409

Query: 730  EEIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLM 551
            E+IA+ AG++VE+L  LL  AR PLSMQQ VW DQ TTFQEITAD  +E P++SVSKQLM
Sbjct: 410  EDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEAPELSVSKQLM 469

Query: 550  RRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQ 371
            RRHIRNLL+VL+PKERKIIRLRFGI D  +KSLSEIG +FGLSKERVRQLESRALYKLK+
Sbjct: 470  RRHIRNLLNVLNPKERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQLESRALYKLKK 529

Query: 370  CLDNHGLGAYSDMI 329
             L +HGL AYSD++
Sbjct: 530  NLSSHGLDAYSDLL 543


>gb|AKC88774.1| sigma factor [Melianthus villosus]
          Length = 538

 Score =  523 bits (1348), Expect = e-145
 Identities = 258/367 (70%), Positives = 310/367 (84%)
 Frame = -1

Query: 1426 PVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPNDPLRLFLG 1247
            P+ ++R VRSTR+L R++K+RR P   + V E N   R++++RK+ +GF+PNDPLRLFLG
Sbjct: 174  PIDEERIVRSTRILARRSKKRRTPY--VGVNETNCSRRTDIKRKVAEGFNPNDPLRLFLG 231

Query: 1246 EPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVSCQSLQSH 1067
             PET++LLTAK+ES LIV+IQELM+LE+V+ RLQ QF  EPTL +WAEA G+SC++LQS 
Sbjct: 232  GPETKQLLTAKEESVLIVRIQELMKLEQVRNRLQCQFGHEPTLIKWAEAAGLSCRALQSQ 291

Query: 1066 LHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKPQVGCRFA 887
            ++ GK SR+KLIYAN RMVVHIAKQY GRGLS QDL QEGS GLM SVEKFKPQ GCRF 
Sbjct: 292  INSGKKSRDKLIYANLRMVVHIAKQYLGRGLSFQDLQQEGSMGLMISVEKFKPQAGCRFG 351

Query: 886  TYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKEEIAATAG 707
            TYAYWWIRQ++RKAIFQHSRTIRLPENVYGLL+KV EAK++ IQ GNH P KE+IA   G
Sbjct: 352  TYAYWWIRQSVRKAIFQHSRTIRLPENVYGLLAKVLEAKRLYIQEGNHHPTKEDIAGRIG 411

Query: 706  ITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMRRHIRNLL 527
            ITV+KL+RLL T RMPLS+QQPVW DQ+TTFQE+TAD  VE+PD+SV KQLMR+H+R LL
Sbjct: 412  ITVDKLERLLATTRMPLSIQQPVWADQNTTFQEVTADTAVEIPDISVGKQLMRKHMRGLL 471

Query: 526  SVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQCLDNHGLG 347
             +LS KER+IIRLRFGIED  QKSLSEIG IFGLSKERVRQLESRAL++LKQCL + GL 
Sbjct: 472  GILSSKERRIIRLRFGIEDGEQKSLSEIGAIFGLSKERVRQLESRALHRLKQCLSSQGLE 531

Query: 346  AYSDMII 326
            AY +M++
Sbjct: 532  AYVNMLV 538


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  523 bits (1347), Expect = e-145
 Identities = 261/374 (69%), Positives = 316/374 (84%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1444 RGLVNT-PVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPND 1268
            R L N  P++++  VRS RLLERQ+KRR +P+  + V E +   +S++ +KI +GFD ND
Sbjct: 153  RNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTND 212

Query: 1267 PLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVS 1088
            PLRLFL  PET++LLT K+ESEL V +QEL+RLEEVK RLQ+QF REPTL EWAEAVG++
Sbjct: 213  PLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMT 272

Query: 1087 CQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKP 908
            CQSLQS LH G SSREK+IYANFR+VVH+AK YQG+GL+LQDLLQEGS GLM+S+EKFKP
Sbjct: 273  CQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKP 332

Query: 907  QVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKE 728
            Q GCRFATYAYWWIRQAIRKAIFQ+SRTIRLPENVY LLS+V++AKK+ IQ G+H P  E
Sbjct: 333  QAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHH-PTNE 391

Query: 727  EIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMR 548
            E+A   GITVEKL+RL  + RMPLS+QQPVW DQ TTFQEITAD  VE PD+ V+KQLMR
Sbjct: 392  ELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMR 451

Query: 547  RHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQC 368
            RH+RNL+S+L PKER+IIR+R+GIE+   KSL EIG+IFGLSKERVRQLESRAL+KLKQC
Sbjct: 452  RHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQC 511

Query: 367  LDNHGLGAYSDMII 326
            L + GLGAY+D+++
Sbjct: 512  LSSQGLGAYADLLV 525


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  523 bits (1347), Expect = e-145
 Identities = 261/374 (69%), Positives = 316/374 (84%), Gaps = 1/374 (0%)
 Frame = -1

Query: 1444 RGLVNT-PVQDKRTVRSTRLLERQTKRRRLPKSNIEVQENNHPGRSEVQRKIGQGFDPND 1268
            R L N  P++++  VRS RLLERQ+KRR +P+  + V E +   +S++ +KI +GFD ND
Sbjct: 168  RNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRKSDIHKKIHEGFDTND 227

Query: 1267 PLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKCRLQTQFSREPTLSEWAEAVGVS 1088
            PLRLFL  PET++LLT K+ESEL V +QEL+RLEEVK RLQ+QF REPTL EWAEAVG++
Sbjct: 228  PLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMT 287

Query: 1087 CQSLQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSVEKFKP 908
            CQSLQS LH G SSREK+IYANFR+VVH+AK YQG+GL+LQDLLQEGS GLM+S+EKFKP
Sbjct: 288  CQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKP 347

Query: 907  QVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQNGNHRPMKE 728
            Q GCRFATYAYWWIRQAIRKAIFQ+SRTIRLPENVY LLS+V++AKK+ IQ G+H P  E
Sbjct: 348  QAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHH-PTNE 406

Query: 727  EIAATAGITVEKLDRLLFTARMPLSMQQPVWMDQSTTFQEITADPTVEVPDVSVSKQLMR 548
            E+A   GITVEKL+RL  + RMPLS+QQPVW DQ TTFQEITAD  VE PD+ V+KQLMR
Sbjct: 407  ELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMR 466

Query: 547  RHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALYKLKQC 368
            RH+RNL+S+L PKER+IIR+R+GIE+   KSL EIG+IFGLSKERVRQLESRAL+KLKQC
Sbjct: 467  RHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQC 526

Query: 367  LDNHGLGAYSDMII 326
            L + GLGAY+D+++
Sbjct: 527  LSSQGLGAYADLLV 540