BLASTX nr result
ID: Forsythia21_contig00045453
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00045453
(582 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,... 67 3e-12
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,... 66 5e-12
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,... 66 5e-12
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,... 66 5e-12
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera... 66 5e-12
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun... 66 5e-12
ref|XP_012485937.1| PREDICTED: RNA polymerase sigma factor sigF,... 64 7e-12
ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF,... 64 7e-12
gb|KJB36540.1| hypothetical protein B456_006G165200 [Gossypium r... 64 7e-12
ref|XP_012485939.1| PREDICTED: RNA polymerase sigma factor sigF,... 64 7e-12
gb|KJB36542.1| hypothetical protein B456_006G165200 [Gossypium r... 64 7e-12
gb|KJB36543.1| hypothetical protein B456_006G165200 [Gossypium r... 64 7e-12
ref|XP_010529715.1| PREDICTED: RNA polymerase sigma factor sigF,... 67 1e-11
ref|XP_010529716.1| PREDICTED: RNA polymerase sigma factor sigF,... 67 1e-11
gb|AKC88770.1| sigma factor [Francoa sonchifolia] 68 1e-11
emb|CDP06761.1| unnamed protein product [Coffea canephora] 67 2e-11
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [... 64 2e-11
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,... 65 3e-11
gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sin... 65 3e-11
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,... 65 3e-11
>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
[Fragaria vesca subsp. vesca]
Length = 554
Score = 67.0 bits (162), Expect(2) = 3e-12
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVEKF+PQAGCRFATY Y W+RQ+I KA
Sbjct: 344 LQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKA 381
Score = 31.2 bits (69), Expect(2) = 3e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLIY NL +V HI KQY
Sbjct: 315 REKLIYSNLRMVVHIAKQY 333
>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X1 [Pyrus x bretschneideri]
Length = 610
Score = 66.2 bits (160), Expect(2) = 5e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
+ EGSMGLM+SVEKF+PQAGCRFATY Y WIRQ++ KA
Sbjct: 400 MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKA 437
Score = 31.2 bits (69), Expect(2) = 5e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLIY NL +V HI KQY
Sbjct: 371 REKLIYANLRMVVHIAKQY 389
>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X2 [Pyrus x bretschneideri]
Length = 573
Score = 66.2 bits (160), Expect(2) = 5e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
+ EGSMGLM+SVEKF+PQAGCRFATY Y WIRQ++ KA
Sbjct: 363 MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKA 400
Score = 31.2 bits (69), Expect(2) = 5e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLIY NL +V HI KQY
Sbjct: 334 REKLIYANLRMVVHIAKQY 352
>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
mume]
Length = 573
Score = 66.2 bits (160), Expect(2) = 5e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
+ EGSMGLM+SVEKF+PQAGCRFATY Y WIRQ++ KA
Sbjct: 363 MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKA 400
Score = 31.2 bits (69), Expect(2) = 5e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLIY NL +V HI KQY
Sbjct: 334 REKLIYANLRMVVHIAKQY 352
>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
chloroplastic-like [Malus domestica]
Length = 571
Score = 66.2 bits (160), Expect(2) = 5e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
+ EGSMGLM+SVEKF+PQAGCRFATY Y WIRQ++ KA
Sbjct: 361 MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKA 398
Score = 31.2 bits (69), Expect(2) = 5e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLIY NL +V HI KQY
Sbjct: 332 REKLIYANLRMVVHIAKQY 350
>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
gi|462400636|gb|EMJ06193.1| hypothetical protein
PRUPE_ppa003513mg [Prunus persica]
Length = 568
Score = 66.2 bits (160), Expect(2) = 5e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
+ EGSMGLM+SVEKF+PQAGCRFATY Y WIRQ++ KA
Sbjct: 358 MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKA 395
Score = 31.2 bits (69), Expect(2) = 5e-12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLIY NL +V HI KQY
Sbjct: 329 REKLIYANLRMVVHIAKQY 347
>ref|XP_012485937.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X1 [Gossypium raimondii]
gi|763769326|gb|KJB36541.1| hypothetical protein
B456_006G165200 [Gossypium raimondii]
Length = 564
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGL++SVEKF+PQ GCRFATY Y WIRQ+I K+
Sbjct: 354 LQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKS 391
Score = 33.1 bits (74), Expect(2) = 7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKL+Y N +VFH+ KQY
Sbjct: 318 LHNGNRSREKLVYANFRMVFHVAKQY 343
>ref|XP_012485938.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X2 [Gossypium raimondii]
Length = 562
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGL++SVEKF+PQ GCRFATY Y WIRQ+I K+
Sbjct: 352 LQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKS 389
Score = 33.1 bits (74), Expect(2) = 7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKL+Y N +VFH+ KQY
Sbjct: 316 LHNGNRSREKLVYANFRMVFHVAKQY 341
>gb|KJB36540.1| hypothetical protein B456_006G165200 [Gossypium raimondii]
Length = 507
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGL++SVEKF+PQ GCRFATY Y WIRQ+I K+
Sbjct: 297 LQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKS 334
Score = 33.1 bits (74), Expect(2) = 7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKL+Y N +VFH+ KQY
Sbjct: 261 LHNGNRSREKLVYANFRMVFHVAKQY 286
>ref|XP_012485939.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X3 [Gossypium raimondii]
Length = 482
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGL++SVEKF+PQ GCRFATY Y WIRQ+I K+
Sbjct: 272 LQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKS 309
Score = 33.1 bits (74), Expect(2) = 7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKL+Y N +VFH+ KQY
Sbjct: 236 LHNGNRSREKLVYANFRMVFHVAKQY 261
>gb|KJB36542.1| hypothetical protein B456_006G165200 [Gossypium raimondii]
Length = 454
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGL++SVEKF+PQ GCRFATY Y WIRQ+I K+
Sbjct: 244 LQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKS 281
Score = 33.1 bits (74), Expect(2) = 7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKL+Y N +VFH+ KQY
Sbjct: 208 LHNGNRSREKLVYANFRMVFHVAKQY 233
>gb|KJB36543.1| hypothetical protein B456_006G165200 [Gossypium raimondii]
Length = 411
Score = 63.9 bits (154), Expect(2) = 7e-12
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGL++SVEKF+PQ GCRFATY Y WIRQ+I K+
Sbjct: 354 LQEGSMGLIKSVEKFKPQVGCRFATYSYWWIRQTITKS 391
Score = 33.1 bits (74), Expect(2) = 7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKL+Y N +VFH+ KQY
Sbjct: 318 LHNGNRSREKLVYANFRMVFHVAKQY 343
>ref|XP_010529715.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X1 [Tarenaya hassleriana]
Length = 545
Score = 67.4 bits (163), Expect(2) = 1e-11
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVEKF+PQ+GCRFATY Y WIRQSI KA
Sbjct: 335 LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKA 372
Score = 28.9 bits (63), Expect(2) = 1e-11
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGGR---EKLIYPNLCIVFHITKQY 180
LH GR EKLI NL +V HI KQY
Sbjct: 299 LHRGRSSREKLITANLRLVVHIAKQY 324
>ref|XP_010529716.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
X2 [Tarenaya hassleriana]
Length = 462
Score = 67.4 bits (163), Expect(2) = 1e-11
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVEKF+PQ+GCRFATY Y WIRQSI KA
Sbjct: 335 LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKA 372
Score = 28.9 bits (63), Expect(2) = 1e-11
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGGR---EKLIYPNLCIVFHITKQY 180
LH GR EKLI NL +V HI KQY
Sbjct: 299 LHRGRSSREKLITANLRLVVHIAKQY 324
>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
Length = 549
Score = 68.2 bits (165), Expect(2) = 1e-11
Identities = 34/48 (70%), Positives = 38/48 (79%)
Frame = -1
Query: 144 GASFVDGWMSLHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
G SF D L EGSMGLM+SVEKF+PQAGCRFATY Y WIRQ++ KA
Sbjct: 332 GLSFPD---LLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKA 376
Score = 27.7 bits (60), Expect(2) = 1e-11
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2
Query: 236 REKLIYPNLCIVFHITKQY 180
REKLI NL +V HI KQY
Sbjct: 310 REKLINANLRMVVHIAKQY 328
>emb|CDP06761.1| unnamed protein product [Coffea canephora]
Length = 556
Score = 66.6 bits (161), Expect(2) = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLMRS+EKF+PQ GCRFATY Y WIRQ+I KA
Sbjct: 346 LQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKA 383
Score = 28.9 bits (63), Expect(2) = 2e-11
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKLIY N +V HI +QY
Sbjct: 310 LHSGNRSREKLIYANHRMVVHIARQY 335
>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
rpoD, putative [Theobroma cacao]
Length = 568
Score = 63.5 bits (153), Expect(2) = 2e-11
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVE+F+PQ GCRFATY Y WIRQ+I K+
Sbjct: 358 LQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKS 395
Score = 31.6 bits (70), Expect(2) = 2e-11
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G R+KLIY NL +V HI KQY
Sbjct: 322 LHSGNSSRDKLIYANLRMVVHIAKQY 347
>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X1 [Citrus sinensis]
Length = 570
Score = 65.5 bits (158), Expect(2) = 3e-11
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVEKF+PQAGCRFA+Y Y W+RQ+I KA
Sbjct: 360 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 397
Score = 29.3 bits (64), Expect(2) = 3e-11
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKLI NL +V H+ KQY
Sbjct: 324 LHSGNSSREKLINANLRLVVHVAKQY 349
>gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
Length = 569
Score = 65.5 bits (158), Expect(2) = 3e-11
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVEKF+PQAGCRFA+Y Y W+RQ+I KA
Sbjct: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396
Score = 29.3 bits (64), Expect(2) = 3e-11
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKLI NL +V H+ KQY
Sbjct: 323 LHSGNSSREKLINANLRLVVHVAKQY 348
>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X2 [Citrus sinensis]
Length = 569
Score = 65.5 bits (158), Expect(2) = 3e-11
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 114 LHEGSMGLMRSVEKFRPQAGCRFATYDYLWIRQSI*KA 1
L EGSMGLM+SVEKF+PQAGCRFA+Y Y W+RQ+I KA
Sbjct: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396
Score = 29.3 bits (64), Expect(2) = 3e-11
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 248 LHGG---REKLIYPNLCIVFHITKQY 180
LH G REKLI NL +V H+ KQY
Sbjct: 323 LHSGNSSREKLINANLRLVVHVAKQY 348