BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00045428
         (414 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [H...   284   2e-74
ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea s...   284   2e-74
emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp...   284   2e-74
ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea s...   284   2e-74
ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana s...   281   1e-73
ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast)...   281   2e-73
gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea] gi|3...   281   2e-73
ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia ...   246   6e-63
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in...   243   5e-62
gb|ADD31149.1| RNA polymerase beta'' subunit protein (chloroplas...   242   6e-62
gb|AEM44884.1| RNA polymerase beta chain, partial [Hydrophyllum ...   239   4e-61
gb|ADO13882.1| RNA polymerase beta subunit, partial (chloroplast...   239   4e-61
ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [...   238   1e-60
ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans...   238   2e-60
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ...   236   4e-60
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ...   236   6e-60
ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) ...   235   8e-60
gb|ADD31152.1| RNA polymerase beta'' subunit protein (chloroplas...   233   3e-59
ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [...   233   5e-59
gb|AEM44881.1| RNA polymerase beta chain, partial [Petalonyx par...   232   8e-59

>ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [Hesperelaea palmeri]
            gi|725798276|emb|CED79752.1| RNA polymerase beta'' chain
            (chloroplast) [Hesperelaea palmeri]
          Length = 1394

 Score =  284 bits (726), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 135/137 (98%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESI+ITKDP IPIKNSLGPF
Sbjct: 931  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPF 990

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 991  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1050

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWYFLHHNYCQ
Sbjct: 1051 LNPFNLNWYFLHHNYCQ 1067


>ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
            gi|334084940|emb|CBJ04288.1| RNA polymerase beta'' chain
            [Olea europaea subsp. cuspidata]
          Length = 1394

 Score =  284 bits (726), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 135/137 (98%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESI+ITKDP IPIKNSLGPF
Sbjct: 931  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPF 990

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 991  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1050

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWYFLHHNYCQ
Sbjct: 1051 LNPFNLNWYFLHHNYCQ 1067


>emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
          Length = 1394

 Score =  284 bits (726), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 135/137 (98%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESI+ITKDP IPIKNSLGPF
Sbjct: 931  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPF 990

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 991  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1050

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWYFLHHNYCQ
Sbjct: 1051 LNPFNLNWYFLHHNYCQ 1067


>ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
            gi|334701878|ref|YP_004564487.1| RNA polymerase beta''
            chain [Olea europaea subsp. maroccana]
            gi|328795423|emb|CBR30304.1| RNA polymerase beta'' chain
            [Olea europaea subsp. europaea]
            gi|334084391|emb|CBR23819.1| RNA polymerase beta'' chain
            [Olea europaea subsp. cuspidata]
            gi|334084854|emb|CBS29226.1| RNA polymerase beta'' chain
            [Olea europaea subsp. maroccana]
            gi|334085026|emb|CBR23728.1| RNA polymerase beta'' chain
            [Olea europaea subsp. cuspidata]
          Length = 1394

 Score =  284 bits (726), Expect = 2e-74
 Identities = 133/137 (97%), Positives = 135/137 (98%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESI+ITKDP IPIKNSLGPF
Sbjct: 931  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPF 990

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 991  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1050

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWYFLHHNYCQ
Sbjct: 1051 LNPFNLNWYFLHHNYCQ 1067


>ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana subsp. woodiana]
            gi|334084649|emb|CBS29340.1| RNA polymerase beta'' chain
            [Olea woodiana subsp. woodiana]
          Length = 1394

 Score =  281 bits (719), Expect = 1e-73
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNV KESI+ITKDP IPIKNSLGPF
Sbjct: 931  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVKKESIQITKDPRIPIKNSLGPF 990

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 991  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1050

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWYFLHHNYCQ
Sbjct: 1051 LNPFNLNWYFLHHNYCQ 1067


>ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
            gi|363413081|gb|ADA69916.2| RNA polymerase beta II
            subunit (chloroplast) [Olea europaea]
          Length = 1390

 Score =  281 bits (718), Expect = 2e-73
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESI+ITKDP IPIKNSLGPF
Sbjct: 927  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPF 986

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 987  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1046

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWY LHHNYCQ
Sbjct: 1047 LNPFNLNWYSLHHNYCQ 1063


>gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea]
            gi|334084477|emb|CBR24610.1| RNA polymerase beta'' chain
            [Olea europaea subsp. europaea]
            gi|510934394|emb|CCQ09092.1| RNA polymerase beta'' chain
            (chloroplast) [Olea europaea subsp. europaea]
          Length = 1394

 Score =  281 bits (718), Expect = 2e-73
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESI+ITKDP IPIKNSLGPF
Sbjct: 931  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIQITKDPRIPIKNSLGPF 990

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAFPI NFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNP+PGSNII
Sbjct: 991  GTAFPIVNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNII 1050

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWY LHHNYCQ
Sbjct: 1051 LNPFNLNWYSLHHNYCQ 1067


>ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia takesimensis]
            gi|744673729|gb|AJD00714.1| RNA polymerase beta'' subunit
            [Scrophularia takesimensis]
          Length = 1389

 Score =  246 bits (627), Expect = 6e-63
 Identities = 123/137 (89%), Positives = 124/137 (90%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV KYHNVIKESIKITKDP IPIKNSLGP 
Sbjct: 930  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV-KYHNVIKESIKITKDPQIPIKNSLGPL 988

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAF I N YSFYHLITHNQILVNNYLQLDNLKQ FQVIKYYL+DENEKIY PDP SNII
Sbjct: 989  GTAFLIGNVYSFYHLITHNQILVNNYLQLDNLKQIFQVIKYYLIDENEKIYKPDPCSNII 1048

Query: 52   LNPFNLNWYFLHHNYCQ 2
               FNLNWYFLH NYCQ
Sbjct: 1049 ---FNLNWYFLHPNYCQ 1062


>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
            gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
            (chloroplast) [Sesamum indicum]
            gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
            indicum]
          Length = 1390

 Score =  243 bits (619), Expect = 5e-62
 Identities = 124/140 (88%), Positives = 124/140 (88%), Gaps = 3/140 (2%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFN V KYHNVIKESIKITKDPLIPIKNSLGP 
Sbjct: 928  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNGV-KYHNVIKESIKITKDPLIPIKNSLGPL 986

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIK---YYLMDENEKIYNPDPGS 62
            GTAF I N YSFYHLITHNQILVNNYLQLDNLKQTFQVI    YYLMDEN KIYNPDP S
Sbjct: 987  GTAFLIANVYSFYHLITHNQILVNNYLQLDNLKQTFQVINLSTYYLMDENAKIYNPDPCS 1046

Query: 61   NIILNPFNLNWYFLHHNYCQ 2
            NII   FNLNWYFLH NYCQ
Sbjct: 1047 NII---FNLNWYFLHPNYCQ 1063


>gb|ADD31149.1| RNA polymerase beta'' subunit protein (chloroplast) [Antirrhinum
            majus]
          Length = 1361

 Score =  242 bits (618), Expect = 6e-62
 Identities = 122/139 (87%), Positives = 125/139 (89%), Gaps = 2/139 (1%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIH LLN+NTGFQS+IILSSSNCFRMGPFNDV KYHNVIKESIKI KDPLIPIKNSLGP 
Sbjct: 915  TIHMLLNQNTGFQSVIILSSSNCFRMGPFNDV-KYHNVIKESIKIPKDPLIPIKNSLGPL 973

Query: 232  GTAFPITNFYSFYHLITHNQILVNN--YLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSN 59
            GTAF I+N YSFYHLITHNQILVNN  YLQLDNLKQTFQVIKYYLMDENEKIYNPDP S 
Sbjct: 974  GTAFQISNVYSFYHLITHNQILVNNYFYLQLDNLKQTFQVIKYYLMDENEKIYNPDPSST 1033

Query: 58   IILNPFNLNWYFLHHNYCQ 2
            II   FNLNWYFLH NYCQ
Sbjct: 1034 II---FNLNWYFLHLNYCQ 1049


>gb|AEM44884.1| RNA polymerase beta chain, partial [Hydrophyllum fendleri]
          Length = 455

 Score =  239 bits (611), Expect = 4e-61
 Identities = 117/137 (85%), Positives = 122/137 (89%)
 Frame = -3

Query: 412 TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
           TIHTLLNRN  FQSLIILSSSNCFRMGPFNDV KY +VIKES+K  KDPLIPI+NSLGP 
Sbjct: 114 TIHTLLNRNKEFQSLIILSSSNCFRMGPFNDV-KYRSVIKESMK--KDPLIPIRNSLGPL 170

Query: 232 GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
           GTA  I NFYSFYHLITHNQILV NYLQLDN KQTFQVIKYYLMDEN KIYNPDPG NII
Sbjct: 171 GTALQIANFYSFYHLITHNQILVTNYLQLDNFKQTFQVIKYYLMDENGKIYNPDPGGNII 230

Query: 52  LNPFNLNWYFLHHNYCQ 2
           LNPF+LNWYFLHHN C+
Sbjct: 231 LNPFHLNWYFLHHNCCE 247


>gb|ADO13882.1| RNA polymerase beta subunit, partial (chloroplast) [Citronella
            suaveolens]
          Length = 1169

 Score =  239 bits (611), Expect = 4e-61
 Identities = 117/137 (85%), Positives = 122/137 (89%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRN   QSLIILSSSNC RMGPFNDV KYHNVIKESI+  KDPLIPI+NS GP 
Sbjct: 903  TIHTLLNRNKECQSLIILSSSNCSRMGPFNDV-KYHNVIKESIQ--KDPLIPIRNSSGPL 959

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTA PI NFYSFYHLITHNQILV NYLQLDNLKQTFQV+KYYLMDEN K YNPDP SNII
Sbjct: 960  GTALPIVNFYSFYHLITHNQILVTNYLQLDNLKQTFQVLKYYLMDENGKFYNPDPCSNII 1019

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNW+FLHHNYC+
Sbjct: 1020 LNPFNLNWHFLHHNYCE 1036


>ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [Premna microphylla]
            gi|748013894|gb|AJE28364.1| RNA polymerase beta' subunit
            (chloroplast) [Premna microphylla]
          Length = 1394

 Score =  238 bits (607), Expect = 1e-60
 Identities = 122/141 (86%), Positives = 126/141 (89%), Gaps = 4/141 (2%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHN--VIKESIKITKDPLIPIKNSLG 239
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV KYHN  VIKESIKITKDP+IPIKNSLG
Sbjct: 928  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV-KYHNHNVIKESIKITKDPVIPIKNSLG 986

Query: 238  PFGTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVI--KYYLMDENEKIYNPDPG 65
            P G AF I N YSFYHLITHNQILVNNYLQLDN KQTFQVI  KYYL++ENEKIYNPDP 
Sbjct: 987  PLGAAFLIANVYSFYHLITHNQILVNNYLQLDNFKQTFQVIKFKYYLIEENEKIYNPDPC 1046

Query: 64   SNIILNPFNLNWYFLHHNYCQ 2
            SNII N FNLNWYFL+ NYCQ
Sbjct: 1047 SNIIFN-FNLNWYFLYPNYCQ 1066


>ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans]
            gi|558697185|gb|AHA84940.1| RNA polymerase beta'' subunit
            [Ajuga reptans]
          Length = 1377

 Score =  238 bits (606), Expect = 2e-60
 Identities = 121/139 (87%), Positives = 124/139 (89%), Gaps = 2/139 (1%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFND IKYHNVIKESI+ITKDP+IPIKNSLGP 
Sbjct: 925  TIHTLLNRNTGFQSLIILSSSNCFRMGPFND-IKYHNVIKESIQITKDPVIPIKNSLGPL 983

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQV--IKYYLMDENEKIYNPDPGSN 59
            GTAF ITN YSFYHLITHN ILVNNYLQLDNLKQTFQV   KYYL+DENEKIYNP   SN
Sbjct: 984  GTAFLITNVYSFYHLITHNPILVNNYLQLDNLKQTFQVFKFKYYLIDENEKIYNPGRCSN 1043

Query: 58   IILNPFNLNWYFLHHNYCQ 2
            II   FNLNWYFLH NYCQ
Sbjct: 1044 II---FNLNWYFLHANYCQ 1059


>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
            gi|438687594|emb|CCP47120.1| RNA polymerase beta''
            subunit (chloroplast) [Tectona grandis]
            gi|438688278|emb|CCP47209.1| RNA polymerase beta''
            subunit (chloroplast) [Tectona grandis]
            gi|438688402|emb|CCP47298.1| RNA polymerase beta''
            subunit (chloroplast) [Tectona grandis]
          Length = 1395

 Score =  236 bits (602), Expect = 4e-60
 Identities = 122/141 (86%), Positives = 125/141 (88%), Gaps = 4/141 (2%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHN--VIKESIKITKDPLIPIKNSLG 239
            TIHT LNRNTGFQSLIILSSSNCFRMGPFNDV KYHN  VIKESI+ITKDP+IPIKNSLG
Sbjct: 930  TIHTFLNRNTGFQSLIILSSSNCFRMGPFNDV-KYHNYNVIKESIQITKDPVIPIKNSLG 988

Query: 238  PFGTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIK--YYLMDENEKIYNPDPG 65
            P GTAF I N YSFYHLITHNQILVNNYLQLDNLKQTFQVIK  YYL+DENEKIYNPD  
Sbjct: 989  PLGTAFLIANVYSFYHLITHNQILVNNYLQLDNLKQTFQVIKFQYYLIDENEKIYNPDSY 1048

Query: 64   SNIILNPFNLNWYFLHHNYCQ 2
            SNII   FNLNWYFLH NYCQ
Sbjct: 1049 SNII---FNLNWYFLHPNYCQ 1066


>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
            philippensis] gi|557136853|emb|CDI43908.1| RNA polymerase
            beta'' subunit (chloroplast) [Lindenbergia philippensis]
          Length = 1368

 Score =  236 bits (601), Expect = 6e-60
 Identities = 121/137 (88%), Positives = 122/137 (89%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILSSSNCFRMGPFND  KYHNVIKESIKITKDPLIPIKNSLG  
Sbjct: 926  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDG-KYHNVIKESIKITKDPLIPIKNSLGLL 984

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAF I N YSFYHLITHNQILVNNYLQLD   QTFQVIKYYL+DENEKIYNPDP SNII
Sbjct: 985  GTAFLIANVYSFYHLITHNQILVNNYLQLD---QTFQVIKYYLIDENEKIYNPDPCSNII 1041

Query: 52   LNPFNLNWYFLHHNYCQ 2
               FNLNWYFLH NYCQ
Sbjct: 1042 ---FNLNWYFLHPNYCQ 1055


>ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) [Schwalbea americana]
            gi|560176690|emb|CDJ38609.1| RNA polymerase beta''
            subunit (chloroplast) [Schwalbea americana]
          Length = 1382

 Score =  235 bits (600), Expect = 8e-60
 Identities = 116/137 (84%), Positives = 122/137 (89%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRNTGFQSLIILS+ NCFRMGPF +  KYHNVIKESIKITKDPL+PIKN LGP 
Sbjct: 924  TIHTLLNRNTGFQSLIILSAYNCFRMGPFKEG-KYHNVIKESIKITKDPLLPIKNLLGPL 982

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTAF + N YSFY+LITHNQILVNNYLQLDNLKQTFQVIKYYL+DENEKIYNPDP SNII
Sbjct: 983  GTAFRMANVYSFYYLITHNQILVNNYLQLDNLKQTFQVIKYYLIDENEKIYNPDPRSNII 1042

Query: 52   LNPFNLNWYFLHHNYCQ 2
               FNLNWYFLH  YCQ
Sbjct: 1043 ---FNLNWYFLHPKYCQ 1056


>gb|ADD31152.1| RNA polymerase beta'' subunit protein (chloroplast) [Ehretia
            acuminata]
          Length = 1381

 Score =  233 bits (595), Expect = 3e-59
 Identities = 115/137 (83%), Positives = 121/137 (88%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TIHTLLNRN   QSLIILSSSNCFRMGPFNDV KYH+VIKES+K  KD  IPI+NSLGP 
Sbjct: 930  TIHTLLNRNKECQSLIILSSSNCFRMGPFNDV-KYHSVIKESMK--KDSRIPIRNSLGPL 986

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTA  I NFYSFYHLITHNQILV +YLQLDNLK TFQVIKYYLMDEN KIYNPDPGSNII
Sbjct: 987  GTALQIANFYSFYHLITHNQILVTHYLQLDNLKHTFQVIKYYLMDENGKIYNPDPGSNII 1046

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPF+LNWYFLHHN C+
Sbjct: 1047 LNPFHLNWYFLHHNCCE 1063


>ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [Liquidambar formosana]
            gi|491650361|gb|AGL13421.1| RNA polymerase beta' subunit
            (chloroplast) [Liquidambar formosana]
          Length = 1390

 Score =  233 bits (593), Expect = 5e-59
 Identities = 114/137 (83%), Positives = 120/137 (87%)
 Frame = -3

Query: 412  TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
            TI TLLNRN   QSLIILSSSNC RMGPFNDV KYHNVIKESIK  +DPLIPI+NSLGP 
Sbjct: 930  TIRTLLNRNKECQSLIILSSSNCSRMGPFNDV-KYHNVIKESIK--RDPLIPIRNSLGPL 986

Query: 232  GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
            GTA  I NFYSFYHLITHN+ILV  YLQLDNLKQTFQV+ YYLMDEN +IYNPDP SNII
Sbjct: 987  GTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRIYNPDPCSNII 1046

Query: 52   LNPFNLNWYFLHHNYCQ 2
            LNPFNLNWYFLHHNYC+
Sbjct: 1047 LNPFNLNWYFLHHNYCE 1063


>gb|AEM44881.1| RNA polymerase beta chain, partial [Petalonyx parryi]
          Length = 515

 Score =  232 bits (591), Expect = 8e-59
 Identities = 114/137 (83%), Positives = 120/137 (87%)
 Frame = -3

Query: 412 TIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVIKYHNVIKESIKITKDPLIPIKNSLGPF 233
           TIHTLLNRN  FQSLIILSSSNC RMGPFNDV KYHNVIKESI+  KD LI  +NSLGP 
Sbjct: 175 TIHTLLNRNKEFQSLIILSSSNCSRMGPFNDV-KYHNVIKESIQNKKDHLI--RNSLGPL 231

Query: 232 GTAFPITNFYSFYHLITHNQILVNNYLQLDNLKQTFQVIKYYLMDENEKIYNPDPGSNII 53
           GT+ PI NFYSF HLITHNQILV NYLQLDNLKQTF+V+KYYLMDEN K YNPDP SNII
Sbjct: 232 GTSLPIANFYSFSHLITHNQILVTNYLQLDNLKQTFEVLKYYLMDENGKFYNPDPCSNII 291

Query: 52  LNPFNLNWYFLHHNYCQ 2
           LNPFNLNWYFLHHNYC+
Sbjct: 292 LNPFNLNWYFLHHNYCE 308