BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00038488
         (643 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   163   1e-45
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        174   2e-45
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   165   1e-42
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   145   3e-40
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    138   2e-38
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   137   9e-38
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         135   4e-37
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   160   5e-37
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   134   8e-37
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   132   4e-36
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   131   2e-35
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   127   4e-35
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   136   5e-35
gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thali...   121   1e-33
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   149   2e-33
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              133   2e-33
emb|CDP17738.1| unnamed protein product [Coffea canephora]            147   5e-33
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   147   5e-33
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   147   6e-33
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           147   6e-33

>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  163 bits (412), Expect(2) = 1e-45
 Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1    GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDR-SD 177
            G L+  G  F    G L++ KG+LVVMKG  ++G+Y L G ++     G  ++ ED  ++
Sbjct: 691  GTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMGSSV----LGTAAVEEDNCTE 746

Query: 178  LWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDY 357
            LWHRR+GH+  KGL  LS Q LL       L FCETCV+GK  RV F +G H+T   L+Y
Sbjct: 747  LWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEY 806

Query: 358  IHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
            IH+DLWGP    +H G R++++ +DD+SRKVW++ L            W T+V+ + GK 
Sbjct: 807  IHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKV 866

Query: 538  VK 543
            VK
Sbjct: 867  VK 868



 Score = 47.8 bits (112), Expect(2) = 1e-45
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           + + GK VKTLRTDNGLEF N + DEFC++ GI
Sbjct: 860 EKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGI 892


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  174 bits (440), Expect(2) = 2e-45
 Identities = 82/175 (46%), Positives = 110/175 (62%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G+L+  G  FKS  G L++ KG+ +VMKG   NGLY LQG ++  ++       EDR+ L
Sbjct: 366 GMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKL 425

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GH+  KGL+ LS Q LLG D +  L FCE C+ GKSHR  F  G+H +K+ LDY 
Sbjct: 426 WHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYA 485

Query: 361 HADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQ 525
           H D WGP + P+  G R+F+S++DDYSRKVWI+ L            W +LV+NQ
Sbjct: 486 HIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQ 540



 Score = 36.2 bits (82), Expect(2) = 2e-45
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ    +K LRTDNGLEF +   +E+C++ GI
Sbjct: 538 ENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGI 570


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  165 bits (417), Expect(2) = 1e-42
 Identities = 80/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G+L+  G  FKS+  +L++ +GSL VMKG  +NGLY L G+ +  K S ++  +   + L
Sbjct: 334 GMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVSTVLKEDVGTTKL 393

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH+R+GHI ++GL+ L  Q +LG   +  L FCE CV GK+ RV F    H T+  LDYI
Sbjct: 394 WHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYI 453

Query: 361 HADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKGV 540
           H+DLWGP + P+ GG R+FL+++DDYSRKVWI+ L            W  LV+ Q  + V
Sbjct: 454 HSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKV 513

Query: 541 K 543
           K
Sbjct: 514 K 514



 Score = 35.8 bits (81), Expect(2) = 1e-42
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           + Q  + VK LRTDNGLEF + + +  C++ GI
Sbjct: 506 ETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGI 538


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  145 bits (366), Expect(2) = 3e-40
 Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 4/184 (2%)
 Frame = +1

Query: 4   VLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINE----DR 171
           +L+  G  +    G L++ KGS +++KG  R  LY+LQG  +    S  V+ +E    D 
Sbjct: 353 LLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTG--SAHVASSEFHQKDM 410

Query: 172 SDLWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPL 351
           + LWH R+GH+G +G++ LS ++LL    V  L FCE CV GK HR  F    H TK  L
Sbjct: 411 TKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTL 470

Query: 352 DYIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMG 531
           DYIH+D WGP +  + GG RFF+SI+DDYSR  W++ +            W  L++NQ G
Sbjct: 471 DYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTG 530

Query: 532 KGVK 543
           K +K
Sbjct: 531 KKIK 534



 Score = 47.4 bits (111), Expect(2) = 3e-40
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ GK +K LRTDNGLEF   E D+FCK+ GI
Sbjct: 526 ENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGI 558


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  138 bits (348), Expect(2) = 2e-38
 Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G L+  G   +   G ++  K     ++G   NGLY L G  +   ++ +   ++ +++L
Sbjct: 391 GTLDKRGYKHEGGDGKVRYFKNQKTALRGELVNGLYILDGNTV-LSETCVAEGSKGKTEL 449

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GHIG   +K L+ + L+ K+ +  L FCE CV+GK+ +VSF +G+H+++  L Y+
Sbjct: 450 WHSRLGHIGLNNMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVLRYV 509

Query: 361 HADLWGPEK-HPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           HADLWG     P+  GN++FLSI+DD +RKVW++ L            W  LV+NQ  K 
Sbjct: 510 HADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKK 569

Query: 538 VK 543
           VK
Sbjct: 570 VK 571



 Score = 47.8 bits (112), Expect(2) = 2e-38
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ  K VK LRTDNGLEF N + D +CKE GI
Sbjct: 563 ENQQNKKVKCLRTDNGLEFCNLKFDAYCKEHGI 595


>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttatus]
          Length = 598

 Score =  137 bits (345), Expect(2) = 9e-38
 Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 6/186 (3%)
 Frame = +1

Query: 4   VLEDGGCMFKSDFGT--LKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSD 177
           VLED G  F+ D+G   + I+KGS  + K  +   +Y    E+     + +  +  D S+
Sbjct: 91  VLEDDG--FRGDWGDGCMNIMKGSRYLFKALRMGNMYVCSAES----SASMNVVQNDLSE 144

Query: 178 LWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSF-EIGQHSTKRP-- 348
           LWH+ +GH+ NK L  L      G D V+ ++ C++C+LGK   V F E    +  R   
Sbjct: 145 LWHKGLGHMSNKWLSILHKNQYFGNDKVSSVTLCDSCILGKQTHVLFPEYPSPNLSRCTE 204

Query: 349 -LDYIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQ 525
            L+YIHAD+WGP   PT+GGNR+FLSI+DDYSRKV++F L            W TL++NQ
Sbjct: 205 ILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSRKVFVFLLKQKSDVFDKFKTWKTLIENQ 264

Query: 526 MGKGVK 543
            GK +K
Sbjct: 265 TGKRIK 270



 Score = 47.0 bits (110), Expect(2) = 9e-38
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ GK +KTLRTDNG+EF N E D  C   GI
Sbjct: 262 ENQTGKRIKTLRTDNGIEFCNLEFDNLCANSGI 294


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  135 bits (340), Expect(2) = 4e-37
 Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G  E  G  F+S+ G L+I  G+ V+++G + + LY L G+    +   +   N+D + L
Sbjct: 389 GTFEKAGHKFESENGMLRIKSGNQVLLEGRRYDTLYILHGKPATDESLAVARANDD-TVL 447

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WHRR+ H+  K +  L  +  L K  V+ L  CE C+ G++ ++ F + QH TK+ L+Y+
Sbjct: 448 WHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYV 507

Query: 361 HADLWGPEKHPTHGGN-RFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           H+DLWG    P   GN ++F+S +DDY+RKVW++ L            W +LV+NQ G+ 
Sbjct: 508 HSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGER 567

Query: 538 VK 543
           VK
Sbjct: 568 VK 569



 Score = 46.6 bits (109), Expect(2) = 4e-37
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERG 635
           +NQ G+ VKTLRTDNGLEF N   D FC+E+G
Sbjct: 561 ENQSGERVKTLRTDNGLEFCNRMFDGFCEEKG 592


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  160 bits (405), Expect = 5e-37
 Identities = 80/182 (43%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G LED GC FKS  G LKI+KG   ++KG KR+ LY L G     +      + +D + L
Sbjct: 358 GTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTEEGESHSSAEV-KDETAL 416

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GH+  KG++ L  +  L ++ +  L FCE CV GK HRVSF   QH TK  L Y+
Sbjct: 417 WHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYV 476

Query: 361 HADLWGPEKHPTHGGN-RFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           H+DLWG   +P   GN ++F+S VDDYSRKVWI+ L            W  +V+NQ  + 
Sbjct: 477 HSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRK 536

Query: 538 VK 543
           VK
Sbjct: 537 VK 538


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  134 bits (336), Expect(2) = 8e-37
 Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G L+  G   +   G ++  K +   ++G   NGLY L G  + ++       ++ ++ L
Sbjct: 381 GTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVMSELCN-AETDKVKTAL 439

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GH+    LK L+ + L+ +  +  L FCE CV+GKS +VSF +G+H+++  L Y+
Sbjct: 440 WHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDALSYV 499

Query: 361 HADLWG-PEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           HADLWG P   P+  G ++FLSI+DD +RKVW++ L            W +LV+NQ+ K 
Sbjct: 500 HADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKK 559

Query: 538 VK 543
           VK
Sbjct: 560 VK 561



 Score = 47.4 bits (111), Expect(2) = 8e-37
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ+ K VK LRTDNGLEF N   D +CKE GI
Sbjct: 553 ENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGI 585


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
           (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
           unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  132 bits (332), Expect(2) = 4e-36
 Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G L+  G   +   G ++  K     ++G   NGLY L G  +   ++ +   ++ +++L
Sbjct: 291 GTLDKRGYKHEGGDGKVRYFKNQKTALRGEIVNGLYILDGNTI-LSETCVAEGSKGKTEL 349

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GH+G   +K L+ + L+ K+ +  L FCE CV+GK+ +VSF +G+H+++  L Y+
Sbjct: 350 WHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKHNSEYVLSYV 409

Query: 361 HADLWGPEK-HPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           HADLWG     P+  GN++FLSI+DD +RKVW++ L               LV+NQ  K 
Sbjct: 410 HADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQQNKK 469

Query: 538 VK 543
           VK
Sbjct: 470 VK 471



 Score = 46.6 bits (109), Expect(2) = 4e-36
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ  K VK LRTDNGLEF N + D +CK+ GI
Sbjct: 463 ENQQNKKVKCLRTDNGLEFCNLKFDAYCKDHGI 495


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  131 bits (330), Expect(2) = 2e-35
 Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G L+  G   +   G ++  K +   ++G    GLY L G  + A +S +   +++ + L
Sbjct: 64  GTLDRLGYKHEGGDGQVRYYKNNKTALRGSLSGGLYVLDGNTVIA-ESCIAERSKELTTL 122

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GH+G   +K L+ + L+       L F E CV+GK+ +VSF IG+H+++  L Y+
Sbjct: 123 WHSRLGHMGGNNMKILAGKGLIKPSEATSLEFYEHCVMGKAKKVSFNIGKHNSEEILSYV 182

Query: 361 HADLWGPEK-HPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           HADLWG +   P+  GN++FLSI+DD SRKVW++ L            W  LV+NQ  K 
Sbjct: 183 HADLWGSQNVTPSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQTDKR 242

Query: 538 VK 543
           VK
Sbjct: 243 VK 244



 Score = 45.1 bits (105), Expect(2) = 2e-35
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ  K VK LRTDNGLEF N + D +CK+ GI
Sbjct: 236 ENQTDKRVKCLRTDNGLEFCNIKFDSYCKKYGI 268


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  127 bits (318), Expect(2) = 4e-35
 Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G  E  G  FK + GTL I+ G  V++   +   LY LQ   +  +   +V   +D + L
Sbjct: 360 GTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEESLSVVK-RQDDTIL 418

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WHRR+GH+  K +  L  + LL K  V+ L  CE C+ GK+ R+ F + QH T+  L+Y+
Sbjct: 419 WHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLEYV 478

Query: 361 HADLWGPEKHP-THGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           H+DLWG    P + G  ++F+S +DDY+RKV I+ L            W  LV+NQ  K 
Sbjct: 479 HSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKR 538

Query: 538 VK 543
           +K
Sbjct: 539 IK 540



 Score = 48.5 bits (114), Expect(2) = 4e-35
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ  K +KTLRTDNGLEF N   DEFC ++GI
Sbjct: 532 ENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGI 564


>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC103833265 [Brassica rapa]
          Length = 3353

 Score =  136 bits (343), Expect(2) = 5e-35
 Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G+LE  GC ++    T+   K    V+ G   NGLYYLQG      ++ +    + ++ +
Sbjct: 295 GMLEKSGCNYQGGDFTITFYKEGQKVITGKYENGLYYLQGTVSRG-EANISESTDSKTKV 353

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WH R+GH+ +K ++ L+ +  + K  V  L FCE CVLGK H++SF   +H+TK  L+Y+
Sbjct: 354 WHTRLGHMSSKNMELLAKEGFIPKTEVGKLEFCEGCVLGKKHKLSFPTAKHTTKGILEYV 413

Query: 361 HADLWGPEKHP-THGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           H+DLWG    P + GG ++F+S +DD+S+KVW++ L            W   V++   K 
Sbjct: 414 HSDLWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKK 473

Query: 538 VK 543
           +K
Sbjct: 474 IK 475



 Score =  136 bits (343), Expect(2) = 5e-35
 Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1    GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
            G+LE  GC ++    T+   K    V+ G   NGLYYLQG      ++ +    + ++ +
Sbjct: 2370 GMLEKSGCNYQGGDFTITFYKEGQKVITGKYENGLYYLQGTVSRG-EANISESTDSKTKV 2428

Query: 181  WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
            WH R+GH+ +K ++ L+ +  + K  V  L FCE CVLGK H++SF   +H+TK  L+Y+
Sbjct: 2429 WHTRLGHMSSKNMELLAKEGFIPKTEVGKLEFCEGCVLGKKHKLSFPTAKHTTKGILEYV 2488

Query: 361  HADLWGPEKHP-THGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
            H+DLWG    P + GG ++F+S +DD+S+KVW++ L            W   V++   K 
Sbjct: 2489 HSDLWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKK 2548

Query: 538  VK 543
            +K
Sbjct: 2549 IK 2550



 Score = 38.5 bits (88), Expect(2) = 5e-35
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +3

Query: 555 KGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           K +K LRTDNGLEF N   DE C+  GI
Sbjct: 472 KKIKCLRTDNGLEFCNNRFDELCRTSGI 499



 Score = 38.5 bits (88), Expect(2) = 5e-35
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +3

Query: 555  KGVKTLRTDNGLEFYNFEIDEFCKERGI 638
            K +K LRTDNGLEF N   DE C+  GI
Sbjct: 2547 KKIKCLRTDNGLEFCNNRFDELCRTSGI 2574


>gb|AAD36943.1|AF069441_3 putative polyprotein [Arabidopsis thaliana]
           gi|7267195|emb|CAB77906.1| putative polyprotein
           [Arabidopsis thaliana]
          Length = 778

 Score =  121 bits (304), Expect(2) = 1e-33
 Identities = 63/182 (34%), Positives = 97/182 (53%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDRSDL 180
           G  E  G  F+S+   L++  G  V+++G + + LY L G+    +   +   N+D   L
Sbjct: 272 GTFEKAGRKFESENDMLRVNAGEQVLLEGRRYDTLYILHGKPATDESLAVAKANDDIV-L 330

Query: 181 WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLDYI 360
           WHRR+ H+  K +  L  +  L K  V+ L  CE C+ GK+ ++ F   QH TK  L+Y+
Sbjct: 331 WHRRLCHMSQKNMSLLVKKGFLDKKKVSMLDTCEDCIYGKAKKIGFNFAQHDTKEKLEYV 390

Query: 361 HADLWGPEKHPTHGGN-RFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGKG 537
           H DLWG    P   GN ++F+S +DD++RKV ++ L            W +LV+NQ G  
Sbjct: 391 HYDLWGAPTMPMALGNCQYFISFIDDHTRKVCVYFLKTKDEAFEKFVSWISLVENQSGNR 450

Query: 538 VK 543
           VK
Sbjct: 451 VK 452



 Score = 48.9 bits (115), Expect(2) = 1e-33
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +3

Query: 540 KNQMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           +NQ G  VKTLRTDNGLEF N   D FC+ERGI
Sbjct: 444 ENQSGNRVKTLRTDNGLEFCNRMFDGFCEERGI 476


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  149 bits (375), Expect = 2e-33
 Identities = 73/185 (39%), Positives = 103/185 (55%), Gaps = 3/185 (1%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINE---DR 171
           G LE  G +     G LK   G+LV++KG  +N LYY QG  +    +   S ++   + 
Sbjct: 297 GALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEA 356

Query: 172 SDLWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPL 351
           + LWH R+GH G K L+ L+ Q LL       L FCE CVLGK  RV F    H+TK  L
Sbjct: 357 AKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGIL 416

Query: 352 DYIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMG 531
           DY+H+D+WGP K P+ GG  +F++ VDD+SR+VW+F +            W   V+N  G
Sbjct: 417 DYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTG 476

Query: 532 KGVKI 546
           + +K+
Sbjct: 477 RKIKV 481


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  133 bits (335), Expect(2) = 2e-33
 Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPK-RNGLYYLQGEALHAKDSGLVSINEDRSD 177
           G L+D GC   S+ G LK++KG+LVVMK  K  + LY L G+ L   D+ + + +++ + 
Sbjct: 364 GQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETT 423

Query: 178 L-WHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLD 354
           + WH+R+GH+  +GLK L ++NLL       L FCE CV+ K HR+ F      +K  LD
Sbjct: 424 MMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILD 483

Query: 355 YIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGK 534
            IH+D+W   K  + GG R+F+S +DDYSR++W++P+            +   ++ + GK
Sbjct: 484 LIHSDVWESPK-LSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGK 542

Query: 535 GVK 543
            +K
Sbjct: 543 KIK 545



 Score = 36.2 bits (82), Expect(2) = 2e-33
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 546 QMGKGVKTLRTDNGLEFYNFEIDEFCKERGI 638
           + GK +K LRTDNG E+ + E   FCK+ GI
Sbjct: 539 ETGKKIKCLRTDNGGEYVDGEFLAFCKQEGI 569


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  147 bits (371), Expect = 5e-33
 Identities = 72/186 (38%), Positives = 106/186 (56%), Gaps = 4/186 (2%)
 Frame = +1

Query: 1   GVLEDGGCMFKSDFGTLKILKGSLVVMKGPKRNGLYYLQGEALHAKDSGLVSINEDR--- 171
           G+LE  G   +   G LK+  G+L+++KG ++N LYY QG  +    +   S +  +   
Sbjct: 382 GLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAE 441

Query: 172 -SDLWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRP 348
            + LWH R+G  G K L+ L+ Q LL    V  L FCE CVL K  +V F  G H+TK  
Sbjct: 442 ATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGI 501

Query: 349 LDYIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQM 528
           LDY+H+D+WGP K P+ GG  +F++ +DD+SR+VW+F +            W   V+NQ 
Sbjct: 502 LDYVHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQT 561

Query: 529 GKGVKI 546
           G+ +KI
Sbjct: 562 GRKIKI 567


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  147 bits (371), Expect = 5e-33
 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
 Frame = +1

Query: 7   LEDGGCMFKSDFGTLKILKGSLVVMKGPKRNG-LYYLQGEALHAKDSGLVSINED---RS 174
           L+  G  +    G LK+ KGSLV +KG   +  LY L+G  L   DS   +I  D   ++
Sbjct: 366 LDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKT 425

Query: 175 DLWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLD 354
           +LWH R+GH+ + G+  L  +NLL   T + + FCE C+ GK  RV F    H+TK  LD
Sbjct: 426 NLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 485

Query: 355 YIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGK 534
           Y+HADLWGP K P+ GG R+ L+I+DDYSRKVW + L            W  +++ Q  +
Sbjct: 486 YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 545

Query: 535 GVKI 546
            VK+
Sbjct: 546 KVKL 549


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  147 bits (370), Expect = 6e-33
 Identities = 74/184 (40%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
 Frame = +1

Query: 7   LEDGGCMFKSDFGTLKILKGSLVVMKGPKRNG-LYYLQGEALHAKDSGLVSINED---RS 174
           L+  G  +    G LK+ KGSLV +KG   +  LY L+G  L   DS   ++  D   ++
Sbjct: 366 LDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKT 425

Query: 175 DLWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLD 354
           +LWH R+GH+ + G+  L  +NLL   T + + FCE C+ GK  RV F    H+TK  LD
Sbjct: 426 NLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 485

Query: 355 YIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGK 534
           Y+HADLWGP K P+ GG R+ L+I+DDYSRKVW + L            W  +++ Q  +
Sbjct: 486 YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 545

Query: 535 GVKI 546
            VK+
Sbjct: 546 KVKL 549


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  147 bits (370), Expect = 6e-33
 Identities = 74/184 (40%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
 Frame = +1

Query: 7   LEDGGCMFKSDFGTLKILKGSLVVMKGPKRNG-LYYLQGEALHAKDSGLVSINED---RS 174
           L+  G  +    G LK+ KGSLV +KG   +  LY L+G  L   DS   ++  D   ++
Sbjct: 368 LDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKT 427

Query: 175 DLWHRRMGHIGNKGLKYLSDQNLLGKDTVAPLSFCETCVLGKSHRVSFEIGQHSTKRPLD 354
           +LWH R+GH+ + G+  L  +NLL   T + + FCE C+ GK  RV F    H+TK  LD
Sbjct: 428 NLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 487

Query: 355 YIHADLWGPEKHPTHGGNRFFLSIVDDYSRKVWIFPLXXXXXXXXXXXXWHTLVKNQMGK 534
           Y+HADLWGP K P+ GG R+ L+I+DDYSRKVW + L            W  +++ Q  +
Sbjct: 488 YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 547

Query: 535 GVKI 546
            VK+
Sbjct: 548 KVKL 551