BLASTX nr result
ID: Forsythia21_contig00033368
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00033368
(302 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 49 5e-08
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 49 5e-08
emb|CAN76151.1| hypothetical protein VITISV_012673 [Vitis vinifera] 49 2e-06
emb|CCH50966.1| T4.5 [Malus x robusta] 49 3e-06
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 39 3e-06
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 39 3e-06
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 49.3 bits (116), Expect(2) = 5e-08
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 61 CTFFGYSIKHKGYNVYLQIID--YISRHVTFDEFTFPFASKIVSPPNLSAFHQS 216
C F GYS+ HKGY + Y+S HV FDE FPFA I S P+ A +S
Sbjct: 732 CVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNISSSPSKDASDES 785
Score = 34.3 bits (77), Expect(2) = 5e-08
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 6 CFPHLRPYNHHKMEFRSHMHIF 71
C+P +RPYN+HK+++RS +F
Sbjct: 713 CYPFIRPYNNHKLQYRSLKCVF 734
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 49.3 bits (116), Expect(2) = 5e-08
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 61 CTFFGYSIKHKGYNVYLQIID--YISRHVTFDEFTFPFASKIVSPPNLSAFHQS 216
C F GYS+ HKGY + Y+S HV FDE FPFA I S P+ A +S
Sbjct: 682 CVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNISSSPSKDASDES 735
Score = 34.3 bits (77), Expect(2) = 5e-08
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 6 CFPHLRPYNHHKMEFRSHMHIF 71
C+P +RPYN+HK+++RS +F
Sbjct: 663 CYPFIRPYNNHKLQYRSLKCVF 684
>emb|CAN76151.1| hypothetical protein VITISV_012673 [Vitis vinifera]
Length = 979
Score = 48.5 bits (114), Expect(2) = 2e-06
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +1
Query: 46 NLGHTCTFFGYSIKHKGYNVYLQIID---YISRHVTFDEFTFPFASKIVSPPNLSAFHQS 216
N C F GY +KHKG+ +YL + Y S HV FDE FPF +K +S +S+ + S
Sbjct: 440 NRSVVCYFLGYRVKHKGF-LYLDMASSQIYASHHVVFDETQFPFLTKSLSSQPVSSSNSS 498
Query: 217 S 219
S
Sbjct: 499 S 499
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 6 CFPHLRPYNHHKMEFRS 56
CFP+LRPY HK+ RS
Sbjct: 426 CFPYLRPYASHKLANRS 442
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 48.9 bits (115), Expect(2) = 3e-06
Identities = 32/78 (41%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 61 CTFFGYSIKHKGYNVYLQIID--YISRHVTFDEFTFPFASKIVSPPNLSAFHQSSLNSSS 234
C F GYS+ H GY + I + YISRHV FDE FP+ S + A H S SS
Sbjct: 981 CVFLGYSLNHSGYRCWDPISNRLYISRHVVFDESLFPYKSL-----SSQASHHSPCVSS- 1034
Query: 235 LPALEPQSHQILPLSTAH 288
L P LPL +H
Sbjct: 1035 --PLHPPMSLHLPLPVSH 1050
Score = 28.5 bits (62), Expect(2) = 3e-06
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 6 CFPHLRPYNHHKMEFRSHMHIF 71
C+P L+PY+ K++F+S +F
Sbjct: 962 CYPWLQPYSRDKLDFKSKQCVF 983
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 38.9 bits (89), Expect(2) = 3e-06
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 3 TCFPHLRPYNHHKMEFRSHMHIF 71
TC+PHL PYN HK++FRS +F
Sbjct: 688 TCWPHLHPYNTHKLQFRSKQCVF 710
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 61 CTFFGYSIKHKGYNVYLQIID---YISRHVTFDEFTFPFAS 174
C F G+S HKG+ +L + YISR V FDE FPF++
Sbjct: 708 CVFLGFSTHHKGFK-FLDVSSGRVYISRDVVFDENVFPFST 747
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 38.9 bits (89), Expect(2) = 3e-06
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 3 TCFPHLRPYNHHKMEFRSHMHIF 71
TC+PHL PYN HK++FRS +F
Sbjct: 688 TCWPHLHPYNTHKLQFRSKQCVF 710
Score = 38.5 bits (88), Expect(2) = 3e-06
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 61 CTFFGYSIKHKGYNVYLQIID---YISRHVTFDEFTFPFAS 174
C F G+S HKG+ +L + YISR V FDE FPF++
Sbjct: 708 CVFLGFSTHHKGFK-FLDVSSGRVYISRDVVFDENVFPFST 747