BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00020987
         (1571 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012847643.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   679   0.0  
ref|XP_011101962.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   650   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   608   e-171
ref|NP_001289502.1| DNA-directed RNA polymerase 1, mitochondrial...   607   e-171
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   606   e-170
ref|XP_009627611.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   604   e-170
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         604   e-170
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   603   e-169
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   600   e-168
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   598   e-168
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   597   e-168
ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   582   e-163
ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   573   e-160
ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   573   e-160
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   568   e-159
ref|XP_008243783.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   565   e-158
ref|XP_009355625.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   551   e-154
gb|KJB50511.1| hypothetical protein B456_008G174700 [Gossypium r...   551   e-154
ref|XP_012438460.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   551   e-154
ref|XP_008339743.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   548   e-153

>ref|XP_012847643.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Erythranthe
            guttatus] gi|604316708|gb|EYU28900.1| hypothetical
            protein MIMGU_mgv1a000798mg [Erythranthe guttata]
          Length = 983

 Score =  679 bits (1752), Expect = 0.0
 Identities = 344/491 (70%), Positives = 390/491 (79%), Gaps = 5/491 (1%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRNLSKQS LR F  FSESH S   F + +S +D  FVE +VP  L+  +NT   ELGF
Sbjct: 1    MWRNLSKQSYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELGF 60

Query: 1282 SRDYSFWRN-QKIGRHKFAISSEPFGSTWSSRDYXXXXXXXXXXXXEDVDEIQELVEEMN 1106
             R   FWR  ++     +AISS  F    S+R Y            E+VDE+QEL+EE+N
Sbjct: 61   RRALVFWRPPREASCPNYAISSHTFRFFGSTRGYAAAAEALVSTSEEEVDELQELIEEIN 120

Query: 1105 KEIQEKG----QQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVDMCEQK 938
            KEI  K     +QK PK+VGGMG+ KYN LRRRQIK+ETEAWE AAKEYQELL DMCEQK
Sbjct: 121  KEINVKSTDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQELLEDMCEQK 180

Query: 937  LAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVITXXXXX 758
            LAPNLPY+KSLFLGWFEPLRDAIAAEQ+LCK+GKNR +YAP FD LP+ MMAVIT     
Sbjct: 181  LAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAVITMHKLM 240

Query: 757  XXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSEEEPDPAVKEQE 578
                     GSARVVQAACHIGEAIE E RIH+FL+  K KNALNR+SEE PDP  KEQ+
Sbjct: 241  GLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGPDPEAKEQD 300

Query: 577  RLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQILMETAHIQPPVDQL 398
            RLRKKV ILMKKQK+ QVR IV+ QDDLKPWGQDAQVK+GCRLIQIL +TA+IQPPVDQ 
Sbjct: 301  RLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQR 360

Query: 397  EDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLH 218
            +DG PDIRPAFVH+LK VET +GSRRYGVIECDPLVRKG+EKTARHMVIPYMPMLVPPL+
Sbjct: 361  DDGAPDIRPAFVHTLKCVETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLN 420

Query: 217  WTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFEALNTLGNTKWKVNKRILG 38
            WTGY+RGAYLFLPSY+MRTHGAKQQREAVKR P+++LEP+F+ALNTLGNTKW+VNKRIL 
Sbjct: 421  WTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGNTKWRVNKRILS 480

Query: 37   VVDRIWASGDR 5
            VVDRIWA+G R
Sbjct: 481  VVDRIWANGGR 491


>ref|XP_011101962.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Sesamum
            indicum]
          Length = 792

 Score =  650 bits (1676), Expect = 0.0
 Identities = 324/461 (70%), Positives = 373/461 (80%), Gaps = 4/461 (0%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRNLS+QS LRK  F +ESH SL  F +VRS QD  FVE++ P   + +VNT+N   GF
Sbjct: 1    MWRNLSRQSYLRKLKFLTESHPSLNAFSAVRSPQDSLFVEKATPFQPQSHVNTRNFGSGF 60

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPFGSTWSSRDYXXXXXXXXXXXXEDVDEIQELVEEMNK 1103
            S+D  FWR   + R K+A S +PFG   ++R Y            E+VDEIQEL+EE+NK
Sbjct: 61   SQDLIFWRKCDMSRLKYASSCDPFGFFGNTRGYATAAEAFVSTSEEEVDEIQELIEEVNK 120

Query: 1102 EIQEKG----QQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVDMCEQKL 935
            E++ K     + K PKMVGGMG+ KYN LRRRQIK+ETEAWEEAA+EYQELLVDMCEQKL
Sbjct: 121  EMKVKSLDITENKQPKMVGGMGLGKYNSLRRRQIKMETEAWEEAAREYQELLVDMCEQKL 180

Query: 934  APNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVITXXXXXX 755
            APNLPY+KSLFLGWFEPL+DAIAAEQ+LCK+GKNR +YAP FD LP+ MMAVIT      
Sbjct: 181  APNLPYIKSLFLGWFEPLKDAIAAEQDLCKEGKNRGAYAPYFDQLPADMMAVITMHKLMG 240

Query: 754  XXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSEEEPDPAVKEQER 575
                    GSARVVQAACHIGEAIE E RIH+FLE  K KNALNR+SEE PDP  KEQER
Sbjct: 241  LLMTGGWNGSARVVQAACHIGEAIEHEVRIHKFLENCKRKNALNRTSEEGPDPEAKEQER 300

Query: 574  LRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQILMETAHIQPPVDQLE 395
            L KKV +LMKKQKLHQVRKIV+QQDDLKPWGQDAQVK+GCRLIQIL +TA+IQPPVDQ++
Sbjct: 301  LSKKVKMLMKKQKLHQVRKIVRQQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQMD 360

Query: 394  DGPPDIRPAFVHSLKTVETQRGSRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLHW 215
            D PPDIRPAFVH+LK+VET +G+RRYGVIECDPLV KGLEKTARHMVIPYMPMLVPPL+W
Sbjct: 361  DAPPDIRPAFVHTLKSVETVKGTRRYGVIECDPLVCKGLEKTARHMVIPYMPMLVPPLNW 420

Query: 214  TGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFE 92
            TGY+RGAYLFLPSY+MRTHGAKQQR+AVKR P+ QLEP+F+
Sbjct: 421  TGYERGAYLFLPSYMMRTHGAKQQRDAVKRAPKLQLEPIFQ 461


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor [Nicotiana
            sylvestris] gi|15824083|dbj|BAB69431.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1002

 Score =  608 bits (1567), Expect = e-171
 Identities = 328/517 (63%), Positives = 372/517 (71%), Gaps = 31/517 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR +SKQ+  RKF     SH S  +  S  S        ++ PL      +T N  LG 
Sbjct: 1    MWRYISKQAYSRKFR---NSHDSALLGFSQYSSS----FGKTRPLQCLCEESTTNPNLGL 53

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF----------------------------GSTWSSRD 1187
            S++  F R  +  RH   I  E                              GS    R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1186 YXXXXXXXXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQ 1016
            Y            ED+DEIQEL+EEMNKE   ++   Q K PK +GGMGV KYN+LRRRQ
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1015 IKLETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGK 836
            IK+ETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 835  NRKSYAPNFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRF 656
            NR +YAP FD LP+ MMAVIT              GSARVVQAA HIGEAIE EARIHRF
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293

Query: 655  LEKTKTKNALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQD 476
            LEKTK  NAL+   E+ P   +KE+ER+RKKV ILMKKQKL QVRKIVKQQDD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 475  AQVKIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDP 296
              VK+GCRLIQILMETA+IQPP DQL+D PPDIRPAFVH+LKTVET +GSRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 295  LVRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPR 116
            LVRKGL+KTARHMVIPYMPMLVPP  W GYD+GAYLFLPSYIMRTHGAKQQREAVKRVP+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 115  KQLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            KQLEPVF+AL+TLGNTKW++N+++LG+VDRIWASG R
Sbjct: 474  KQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGR 510


>ref|NP_001289502.1| DNA-directed RNA polymerase 1, mitochondrial [Nicotiana sylvestris]
            gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase
            [Nicotiana sylvestris]
          Length = 1002

 Score =  607 bits (1565), Expect = e-171
 Identities = 328/517 (63%), Positives = 371/517 (71%), Gaps = 31/517 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR +SK +  RKF     SH S  +  S  S        ++ PL      +T N  LG 
Sbjct: 1    MWRYISKHAYSRKFR---NSHDSALLGFSQYSSS----FGKTRPLQCLCEESTTNPNLGL 53

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF----------------------------GSTWSSRD 1187
            S++  F R  +  RH   I  E                              GS    R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1186 YXXXXXXXXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQ 1016
            Y            ED+DEIQEL+EEMNKE   ++   Q K PK +GGMGV KYN+LRRRQ
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1015 IKLETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGK 836
            IK+ETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 835  NRKSYAPNFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRF 656
            NR +YAP FD LP+ MMAVIT              GSARVVQAA HIGEAIE EARIHRF
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293

Query: 655  LEKTKTKNALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQD 476
            LEKTK  NAL+   E+ P   +KE+ERLRKKV ILMKKQKL QVRKIVKQQDD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 475  AQVKIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDP 296
              VK+GCRLIQILMETA+IQPP DQL+D PPDIRPAFVH+LKTVET +GSRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 295  LVRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPR 116
            LVRKGL+KTARHMVIPYMPMLVPP  W GYD+GAYLFLPSYIMRTHGAKQQREAVKRVP+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 115  KQLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            KQLEPVF+AL+TLGNTKW++N+++LG+VDRIWASG R
Sbjct: 474  KQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGR 510


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
            [Nicotiana tabacum]
          Length = 1002

 Score =  606 bits (1562), Expect = e-170
 Identities = 329/517 (63%), Positives = 373/517 (72%), Gaps = 31/517 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR +SK +  RKF     SH S  +  S  S        ++ PL      +T +  LG 
Sbjct: 1    MWRYISKHAYSRKFR---NSHDSALLGFSQYSSS----FGKTRPLQCLCEESTTHPNLGL 53

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF---------GSTWSS-------------------RD 1187
            S++  F R  +  RH   I  E            ST+SS                   R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRS 113

Query: 1186 YXXXXXXXXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQ 1016
            Y            ED+DEIQEL+EEM+KE   ++   Q K PK +GGMGV KYN LRRRQ
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQ 173

Query: 1015 IKLETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGK 836
            IK+ETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 835  NRKSYAPNFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRF 656
            NR +YAP FD LP+ MMAVIT              GSARVVQAA +IGEAIE EARIHRF
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRF 293

Query: 655  LEKTKTKNALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQD 476
            LEKTK  NAL+   EE P   +KE+ERLRKKV ILMKKQKL QVRKIVKQQDD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQD 353

Query: 475  AQVKIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDP 296
              VK+GCRLIQILMETA+IQPP DQL+DGPPDIRPAFVH+LKTVET +GSRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 295  LVRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPR 116
            LVRKGL+KTARHMVIPYMPMLVPP  W GYD+G YLFLPSYIMRTHGAKQQREAVKRVP+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 115  KQLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            KQLEPVF+AL+TLGNTKW+VN+++LG+VDRIWASG R
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGR 510


>ref|XP_009627611.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Nicotiana
            tomentosiformis]
          Length = 1002

 Score =  604 bits (1557), Expect = e-170
 Identities = 326/517 (63%), Positives = 370/517 (71%), Gaps = 31/517 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR +SK +  RKF     SH S  +  S  S        ++ PL      +T +  LG 
Sbjct: 1    MWRYISKHAYSRKFR---NSHDSALLGFSQYSSS----FGKTRPLQCLCEESTTHPNLGL 53

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF----------------------------GSTWSSRD 1187
            S++  F R  +  RH   I  E                              GS    R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSIFSSVKGDFRICGKRGSGSLGRLRS 113

Query: 1186 YXXXXXXXXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQ 1016
            Y            ED+DEIQEL+EEM+KE   ++   Q K PK +GGMGV KYN+LRRRQ
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1015 IKLETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGK 836
            IK+ETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 835  NRKSYAPNFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRF 656
            NR +YAP FD LP+ MMAVIT              GSARVVQAA +IGEAIE EARIHRF
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRF 293

Query: 655  LEKTKTKNALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQD 476
            LEKTK  NAL+   EE P   +KE+ERLRKKV  LMKKQKL QVRKIVKQQDD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEETPGDMMKERERLRKKVKFLMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 475  AQVKIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDP 296
              VK+GCRLIQILMETA+IQPP DQL+DGPPDIRPAFVH+LKTVET +GSRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 295  LVRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPR 116
            LVRKGL+KTARHMVIPYMPMLVPP  W GYD+G YLFLPSYIMRTHGAKQQREAVKRVP+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 115  KQLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            KQLEPVF+AL+TLGNTKW+VN+++LG+VDRIWASG R
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGR 510


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  604 bits (1557), Expect = e-170
 Identities = 328/517 (63%), Positives = 373/517 (72%), Gaps = 31/517 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR +SK +  RKF     SH S  +  S  S        ++ PL      +T +  LG 
Sbjct: 1    MWRYISKHAYSRKFR---NSHDSALLGFSQYSSS----FGKTRPLQCLCEESTTHPNLGL 53

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF---------GSTWSS-------------------RD 1187
            S++  F R  +  RH   I  E            ST+SS                   R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRS 113

Query: 1186 YXXXXXXXXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQ 1016
            Y            ED+DEIQEL+EEM+KE   ++   Q K PK +GGMGV KYN LRRRQ
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQ 173

Query: 1015 IKLETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGK 836
            IK+ETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 835  NRKSYAPNFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRF 656
            NR +YAP FD LP+ MMAVIT              GSARVVQAA +IGEAIE EARIHRF
Sbjct: 234  NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRF 293

Query: 655  LEKTKTKNALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQD 476
            LEKTK  NAL+   EE P   +KE+ERLRKKV ILMKKQKL QVRKIVKQQDD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQD 353

Query: 475  AQVKIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDP 296
              VK+GCRLIQILMETA+IQPP DQL+DGPPDIRPAFVH+LKTVET +GSRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 295  LVRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPR 116
            LVRKGL+KTARHMVIPYMPMLVPP  W GYD+G YLFLPSYIMRTHGAKQQREAVKRVP+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 115  KQLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            KQLEPVF+AL+TLGNTKW+VN+++LG+V+RIWASG R
Sbjct: 474  KQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGR 510


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score =  603 bits (1555), Expect = e-169
 Identities = 327/517 (63%), Positives = 370/517 (71%), Gaps = 31/517 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR +SKQ+  RKF     SH S  +  S  S        ++ PL      +T N  LG 
Sbjct: 1    MWRYISKQAYSRKFR---NSHDSALLGFSQYSSS----FGKTRPLQCLCEESTTNPNLGL 53

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF----------------------------GSTWSSRD 1187
            S++  F R  +  RH   I  E                              GS    R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 1186 YXXXXXXXXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQ 1016
            Y            ED DEIQEL+EEMNKE   ++   Q K PK +GGMGV KYN+LRRRQ
Sbjct: 114  YGSAAEAIASTSEEDTDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQ 173

Query: 1015 IKLETEAWEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGK 836
            IK+ETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GK
Sbjct: 174  IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 835  NRKSYAPNFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRF 656
            NR + AP FD LP+ MMAVIT              GSARVVQAA HIGEAIE EARIHRF
Sbjct: 234  NRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRF 293

Query: 655  LEKTKTKNALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQD 476
            LEKTK  NAL+   E+ P   +KE+ER+RKKV ILMKKQKL QVRKIVKQQDD KPWGQD
Sbjct: 294  LEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQD 353

Query: 475  AQVKIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDP 296
              VK+GCRLIQILMETA+IQPP DQL+D PPDIRPAFVH+LKTVET +GSRRYGVI+CDP
Sbjct: 354  NLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDP 413

Query: 295  LVRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPR 116
            LVRKGL+KTARHMVIPYMPMLVPP  W GYD+GAYLFLPSYIMRTHGAKQQREAVKRVP+
Sbjct: 414  LVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPK 473

Query: 115  KQLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            KQLEPVF+AL+TLGNTKW++N+++LG+VDRIWASG R
Sbjct: 474  KQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGR 510


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  600 bits (1546), Expect = e-168
 Identities = 308/493 (62%), Positives = 372/493 (75%), Gaps = 7/493 (1%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRNL+K +  R+    S+  S  P  C+ R +    F +++  L+ +D+VN+     G 
Sbjct: 1    MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFY----FPDKARALESQDHVNSLRPVAGL 56

Query: 1282 SR-DYSFWRNQKIGRHKFAISSEP---FGSTWSSRDYXXXXXXXXXXXXED-VDEIQELV 1118
             R     ++  ++GR  F ++  P   FG     + Y               VDE+QELV
Sbjct: 57   RRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELV 116

Query: 1117 EEMNKEIQEKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVDMCEQK 938
            EE+NK  +    +K PK++GG+   K+N+LRRRQIK+ETEAWEEAAKEY+ELL DMCEQK
Sbjct: 117  EEVNKGDK---LEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQK 173

Query: 937  LAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVITXXXXX 758
            LAPNLPY+KSLFLGWFEPLRD IAAEQ+LCK+GKNR +YAP FD LP+ MMAVIT     
Sbjct: 174  LAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLM 233

Query: 757  XXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSEEEPDPAVKEQE 578
                     GSARVVQAACHIGEAIE E RI RF+EKTK K+A + + +   +P  KEQE
Sbjct: 234  GLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQE 293

Query: 577  RLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQILMETAHIQPPVDQL 398
            +LRKKV++LMKKQKL QVR+IVK+QDD KPWGQDA VK+G RLI++L+ETA+IQPP DQL
Sbjct: 294  KLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQL 353

Query: 397  EDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPP 224
             DGPPDIRPAFVH+LKTV  ETQ+G+RRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPP
Sbjct: 354  GDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPP 413

Query: 223  LHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFEALNTLGNTKWKVNKRI 44
            L+WTGYD+GAYLFLPSY+MR HGA+QQREA+KR PRK LEP FEALNTLGNTKW++NKR+
Sbjct: 414  LNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRV 473

Query: 43   LGVVDRIWASGDR 5
            LGV+DRIWASG R
Sbjct: 474  LGVIDRIWASGGR 486


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score =  598 bits (1542), Expect = e-168
 Identities = 328/510 (64%), Positives = 377/510 (73%), Gaps = 24/510 (4%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRK--------FNFFSESHSS---LPVFCS-VRSHQDLNFVERSV----- 1334
            MWR +SKQ+  RK        F  F++S      L   C  +  + +L   + S+     
Sbjct: 1    MWRYISKQAYSRKLRNTHDSDFLGFAQSFGKTRPLQGLCEEIYRNPNLGVSQSSIFTRVN 60

Query: 1333 ----PLDLKDYVNTQNQELGFSRDYSFWRNQKIGRHKFAISSEPFGSTWSSRDYXXXXXX 1166
                 LD     + +N  LGFS    F R     +  F +     GS    R Y      
Sbjct: 61   GKSRCLDGMCEDSCRNHYLGFSESSIFSRV----KGDFRVC----GSLGILRSYGSAAEA 112

Query: 1165 XXXXXXEDVDEIQELVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEA 995
                  ED+DEIQEL+EEMNKE   ++   Q K PK VGGMG+ KYN+LRRRQIK+ETEA
Sbjct: 113  IASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNLLRRRQIKVETEA 172

Query: 994  WEEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAP 815
            WE+AAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ+LC +GKNR +YAP
Sbjct: 173  WEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAP 232

Query: 814  NFDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTK 635
             FD LP+ MMAVIT              GSARVVQAA HIGEAIE EARIHRFLEKTK K
Sbjct: 233  FFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTK-K 291

Query: 634  NALNRSSEEEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGC 455
            NAL+ S EE     +KE+ERLRKKV ILMKKQKL QVRKIVKQQDD KPWGQD  VK+GC
Sbjct: 292  NALDGSLEETAGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGC 351

Query: 454  RLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDPLVRKGLE 275
            +LIQIL+ETA+IQPP DQL+D PPDIRPAF+H+LKTVET +GSRRYGVI+CDPLVRKGL+
Sbjct: 352  KLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVETVKGSRRYGVIQCDPLVRKGLD 411

Query: 274  KTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVF 95
            KTARHMVIPYMPMLVPP +W+GYDRGAYLFLPSYIMRTHGAKQQREAVKRVP+KQLEPVF
Sbjct: 412  KTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVF 471

Query: 94   EALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            +AL+TLGNTKW+VNKR+LG++DRIWASG R
Sbjct: 472  QALDTLGNTKWRVNKRVLGILDRIWASGGR 501


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Solanum
            lycopersicum]
          Length = 993

 Score =  597 bits (1540), Expect = e-168
 Identities = 311/436 (71%), Positives = 350/436 (80%), Gaps = 3/436 (0%)
 Frame = -2

Query: 1303 QNQELGFSRDYSFWRNQKIGRHKFAISSEPFGSTWSSRDYXXXXXXXXXXXXEDVDEIQE 1124
            +N  LGFS    F R     +  F +     GS    R Y            ED+DEIQE
Sbjct: 75   RNHYLGFSESSIFSRV----KGDFRVC----GSLGVLRSYGSAAEAIASTSEEDIDEIQE 126

Query: 1123 LVEEMNKE---IQEKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVD 953
            L+EEMNKE   ++   Q K PK VGGMG+ KYN+LRRRQIK+ETEAWE+AAKEYQELL+D
Sbjct: 127  LIEEMNKENEALKTNLQPKQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMD 186

Query: 952  MCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVIT 773
            MCEQKLAPNLPY+KSLFLGWFEPL+DAIAAEQ+LC +GKNR +YAP FD LP+ MMAVIT
Sbjct: 187  MCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVIT 246

Query: 772  XXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSEEEPDPA 593
                          GSARVVQAA HIGEAIE EARIHRFLEKTK KNAL+ S EE     
Sbjct: 247  MHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTK-KNALDGSLEETAGDI 305

Query: 592  VKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQILMETAHIQP 413
            +KE+ERLRKKV ILMKKQKL QVRKIVKQQDD KPWGQD  VK+GCRLIQIL+ETA+IQP
Sbjct: 306  MKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQP 365

Query: 412  PVDQLEDGPPDIRPAFVHSLKTVETQRGSRRYGVIECDPLVRKGLEKTARHMVIPYMPML 233
            P DQLED PPDIRPAF+H+LKTV+T +GSRRYGVI+CDPLVRKGL+KTARHMVIPYMPML
Sbjct: 366  PNDQLEDCPPDIRPAFMHTLKTVDTVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPML 425

Query: 232  VPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFEALNTLGNTKWKVN 53
            VPP +W+GYDRGAYLFLPSYIMRTHGAKQQREAVKRVP+KQLEPVF+AL+TLGNTKW+VN
Sbjct: 426  VPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVN 485

Query: 52   KRILGVVDRIWASGDR 5
            KR+LG++DRIWASG R
Sbjct: 486  KRVLGILDRIWASGGR 501


>ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Nelumbo nucifera]
          Length = 1031

 Score =  582 bits (1499), Expect = e-163
 Identities = 307/500 (61%), Positives = 364/500 (72%), Gaps = 14/500 (2%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWR++++++SL K     +S S L  F  +   QD    + + P +LK  ++ +  E  F
Sbjct: 40   MWRHIARRASLTKVRLSRDSSSILRTFGFMGFSQDSILNDTTRPFELKSSMSFRFSERSF 99

Query: 1282 SRDYSF-WRNQKIGRHKFAISSEPFGSTWSSRDYXXXXXXXXXXXXED-------VDEIQ 1127
             R+     +  ++GR        P      S                D       +DEIQ
Sbjct: 100  LRNGELPSKEDELGRPILGCFRNPISPPRLSNHPKGYASVAEAVCSMDAEEDLSAIDEIQ 159

Query: 1126 ELVEEMNKEIQ---EKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLV 956
            EL+EEM KE +   E   QK  K+VGGMG  KY +LRRRQ+K+ETEAWE+AAKEY+ELL+
Sbjct: 160  ELLEEMGKEEKKELELRDQKQIKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYRELLM 219

Query: 955  DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVI 776
            DMCEQKLAPNLPY+KSLFLGWFEPLRD I AEQELC+KGKNR +YAP FD LP+ MM+VI
Sbjct: 220  DMCEQKLAPNLPYMKSLFLGWFEPLRDCIVAEQELCRKGKNRTAYAPYFDQLPAEMMSVI 279

Query: 775  TXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSE-EEPD 599
            T              GS RVVQAAC IGEAIE E RIH+FLEKT+ K   ++ ++  E D
Sbjct: 280  TMHKLMGLLMTGGEHGSCRVVQAACQIGEAIENEVRIHKFLEKTRKKTDKDKKADGGESD 339

Query: 598  PAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQILMETAHI 419
            P +KEQ+RLRKKV  LMKKQKL QVR+IVK QDD KPWGQDAQ K+G RLI++LM+TA+I
Sbjct: 340  PVIKEQQRLRKKVTDLMKKQKLQQVRQIVKGQDDSKPWGQDAQAKVGSRLIELLMQTAYI 399

Query: 418  QPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLVRKGLEKTARHMVIPY 245
            QPPVDQL DGPPDIRPAF HSLKTV  E Q+ SRRYGVIECDPLVRKGLE+TARHMVIPY
Sbjct: 400  QPPVDQLADGPPDIRPAFRHSLKTVTKEAQKTSRRYGVIECDPLVRKGLERTARHMVIPY 459

Query: 244  MPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFEALNTLGNTK 65
            MPMLVPP++WTGYD+GAYLFLPSY+MRTHGA+QQREAVKR PRKQLEPVFEAL+TLGNTK
Sbjct: 460  MPMLVPPVNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRAPRKQLEPVFEALDTLGNTK 519

Query: 64   WKVNKRILGVVDRIWASGDR 5
            W+VNKR+L VVDRIWASG R
Sbjct: 520  WRVNKRVLSVVDRIWASGGR 539


>ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X2 [Nelumbo
            nucifera]
          Length = 942

 Score =  573 bits (1477), Expect = e-160
 Identities = 311/512 (60%), Positives = 370/512 (72%), Gaps = 26/512 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFS-ESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELG 1286
            MWRN+ KQ+     NFFS +S S L  F  V   Q   F +++   + K  +N    E  
Sbjct: 1    MWRNIVKQAC--STNFFSRDSSSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGFSESC 58

Query: 1285 FSRD--------------YSFWRNQ----KIGRHK--FAISSEPFGSTWSSRDYXXXXXX 1166
            F R+              +  +RN     +   H   +A  +E   ST +  D       
Sbjct: 59   FLRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSV---- 114

Query: 1165 XXXXXXEDVDEIQELVEEMNKEIQEK--GQQKLPKMVGGMGVAKYNMLRRRQIKLETEAW 992
                    VDEIQEL+EEM+KE +E     QK  K+VGGMG  KY +LRRRQ+K+ETEAW
Sbjct: 115  --------VDEIQELLEEMSKEEKELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAW 166

Query: 991  EEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPN 812
            E+AAKEY+ELL+DMCEQKLAPNLPY+KSLFLGWFEPLRD IAAEQELC+KGKNR +YAP 
Sbjct: 167  EQAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPY 226

Query: 811  FDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKN 632
            FD LP+ MM+VIT              GSARVVQAAC IG+AIE E RI++FLEKTK K 
Sbjct: 227  FDQLPAEMMSVITMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKT 286

Query: 631  ALNRSSE-EEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGC 455
              ++ +E  E DPA+KEQ+RLRKKV  LMKKQKL QVR+IVK QDD KPWGQDAQ K+G 
Sbjct: 287  DKDKKAEGGESDPAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGS 346

Query: 454  RLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLVRKG 281
             LI++LM+TA+IQ P DQL DGPPDIRPAF H+LKT+  E+Q+ SRRYG+IECDPLVRKG
Sbjct: 347  HLIELLMQTAYIQSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKG 406

Query: 280  LEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEP 101
            LE+TARHMVIPYMPMLVPPL+WTGYD+GAYLFLPSY+MRTHGA+QQREAVKR  RKQLEP
Sbjct: 407  LERTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEP 466

Query: 100  VFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            +FEAL+TLGNTKW++NKR+LGVVDRIWASG R
Sbjct: 467  IFEALDTLGNTKWRINKRVLGVVDRIWASGGR 498


>ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X1 [Nelumbo
            nucifera]
          Length = 990

 Score =  573 bits (1477), Expect = e-160
 Identities = 311/512 (60%), Positives = 370/512 (72%), Gaps = 26/512 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFS-ESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELG 1286
            MWRN+ KQ+     NFFS +S S L  F  V   Q   F +++   + K  +N    E  
Sbjct: 1    MWRNIVKQAC--STNFFSRDSSSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGFSESC 58

Query: 1285 FSRD--------------YSFWRNQ----KIGRHK--FAISSEPFGSTWSSRDYXXXXXX 1166
            F R+              +  +RN     +   H   +A  +E   ST +  D       
Sbjct: 59   FLRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSV---- 114

Query: 1165 XXXXXXEDVDEIQELVEEMNKEIQEK--GQQKLPKMVGGMGVAKYNMLRRRQIKLETEAW 992
                    VDEIQEL+EEM+KE +E     QK  K+VGGMG  KY +LRRRQ+K+ETEAW
Sbjct: 115  --------VDEIQELLEEMSKEEKELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAW 166

Query: 991  EEAAKEYQELLVDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPN 812
            E+AAKEY+ELL+DMCEQKLAPNLPY+KSLFLGWFEPLRD IAAEQELC+KGKNR +YAP 
Sbjct: 167  EQAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPY 226

Query: 811  FDILPSGMMAVITXXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKTKTKN 632
            FD LP+ MM+VIT              GSARVVQAAC IG+AIE E RI++FLEKTK K 
Sbjct: 227  FDQLPAEMMSVITMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKT 286

Query: 631  ALNRSSE-EEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGC 455
              ++ +E  E DPA+KEQ+RLRKKV  LMKKQKL QVR+IVK QDD KPWGQDAQ K+G 
Sbjct: 287  DKDKKAEGGESDPAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGS 346

Query: 454  RLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLVRKG 281
             LI++LM+TA+IQ P DQL DGPPDIRPAF H+LKT+  E+Q+ SRRYG+IECDPLVRKG
Sbjct: 347  HLIELLMQTAYIQSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKG 406

Query: 280  LEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEP 101
            LE+TARHMVIPYMPMLVPPL+WTGYD+GAYLFLPSY+MRTHGA+QQREAVKR  RKQLEP
Sbjct: 407  LERTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEP 466

Query: 100  VFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            +FEAL+TLGNTKW++NKR+LGVVDRIWASG R
Sbjct: 467  IFEALDTLGNTKWRINKRVLGVVDRIWASGGR 498


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  568 bits (1464), Expect = e-159
 Identities = 301/515 (58%), Positives = 374/515 (72%), Gaps = 29/515 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRNL+KQ + RK N  S+SH   P   S+   Q+ +F++++   + +  +N +   +GF
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 1282 SRDYSFWRNQK--IGRHKFAISSEPFGSTWSSRDYXXXXXXXXXXXXED-------VDEI 1130
             R      +QK  +GR      S P+G +                   D        +EI
Sbjct: 61   -RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEI 119

Query: 1129 QELVEEMNKE--IQEKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLV 956
            QE++E++ +E  + E   ++  ++V GMGV KYN+LR+RQIKLETEAW+EAAKEYQELL 
Sbjct: 120  QEMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLA 179

Query: 955  DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVI 776
            DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA+Q+ CK+  +R+S+AP FD LP+  MAVI
Sbjct: 180  DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVI 239

Query: 775  TXXXXXXXXXXXXXXG-SARVVQAACHIGEAIEQEARIHRFLEKTKTK-NALNRSSE--- 611
            T                S RVVQAAC IGEAIE E RIHRFLEKTK K N +++ +E   
Sbjct: 240  TMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADS 299

Query: 610  -----------EEPDPAVKEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVK 464
                       +E +   KEQERLRKKVN L+K+QK+ QVR IVK+Q+DLKPWGQ+A VK
Sbjct: 300  VPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVK 359

Query: 463  IGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLV 290
            +GCRLIQ+LM+TA+IQPPVDQ+ DGPPDIRPAFVH+LKT+  +TQ+ SRRYGVIECDP+V
Sbjct: 360  VGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIV 419

Query: 289  RKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQ 110
            RKG+EKTARHMV+PYMPMLVPP++WTGYDRGAYLFLPSY+MRTHGAKQQRE VKR PRKQ
Sbjct: 420  RKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQ 479

Query: 109  LEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            LEPVFEAL+TLG+TKW+VNKR+LGV+DRIWASG R
Sbjct: 480  LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGR 514


>ref|XP_008243783.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Prunus mume]
          Length = 1006

 Score =  565 bits (1456), Expect = e-158
 Identities = 301/515 (58%), Positives = 372/515 (72%), Gaps = 29/515 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRNL+KQ + RK N  S+SH S P   S+   Q+ +F+E++   + +  +N +   +GF
Sbjct: 1    MWRNLAKQVASRKTNLSSQSHFSSPSSTSMIFSQESSFLEKAWHFEARKCINNRILVMGF 60

Query: 1282 SRDYSFWRNQK--IGRHKFAISSEPFGSTWSSRDYXXXXXXXXXXXXED-------VDEI 1130
             R      +QK  +GR      S P+G +                   D        +EI
Sbjct: 61   -RQVGDMASQKDELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEI 119

Query: 1129 QELVEEMNKE--IQEKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLV 956
            QE++E++ +E  + E   ++  ++V GMGV KYN+LR+RQIKLETEAW+EAAKEYQELL 
Sbjct: 120  QEMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLA 179

Query: 955  DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVI 776
            DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAA+Q+ CK+  +R+S+AP FD LP+  MAVI
Sbjct: 180  DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQTNSRQSHAPYFDHLPADKMAVI 239

Query: 775  TXXXXXXXXXXXXXXG-SARVVQAACHIGEAIEQEARIHRFLEKTKTK-NALNRSSEEEP 602
            T                S RVVQAAC IGEAIE E RIHRFLEKTK K N  ++ +E + 
Sbjct: 240  TMHKLMGLLMTNNGGVGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTTDKKAEADS 299

Query: 601  DPAVKEQERL--------------RKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVK 464
             P   EQE+L              RKKVN L+K+QK+ QVR IVK+Q+DLKPWGQ+A VK
Sbjct: 300  VPVTDEQEKLADEQGKLADEQEKLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVK 359

Query: 463  IGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLV 290
            +GCRLIQ+LM+TA+IQPPVDQ+ DGPPDIRPAFVH+LKT+  +TQ+ SRRYGVIECDPLV
Sbjct: 360  VGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITKDTQKTSRRYGVIECDPLV 419

Query: 289  RKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQ 110
            RKG++KTARHMV+PYMPMLVPP++WTGYDRGAYLFLPSY+MRTHGAKQQRE VKR PRKQ
Sbjct: 420  RKGMDKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQ 479

Query: 109  LEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            LEPVFEAL+TLG+TKW+VNKR+LGV+DRIWASG R
Sbjct: 480  LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGR 514


>ref|XP_009355625.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Pyrus x
            bretschneideri]
          Length = 1007

 Score =  551 bits (1421), Expect = e-154
 Identities = 298/516 (57%), Positives = 368/516 (71%), Gaps = 30/516 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRN +K+ + RK N  S+ H       SV+  Q+ +F+E++   D ++ VN +   +GF
Sbjct: 1    MWRNFAKKVASRKANPSSQFHLGFATSSSVKFSQESSFIEKTRHFDARNCVNNRLLVMGF 60

Query: 1282 SRDYSFWRNQKIGRHKFAISSEPF-----GSTWSSRDYXXXXXXXXXXXXED----VDEI 1130
             R      +QK    + ++ +  +     G    +R Y            ++     +EI
Sbjct: 61   -RQIGDTASQKDELGRCSLLNPSYFHGVSGFYGYARGYASAAEAIASTDGDEESSGSEEI 119

Query: 1129 QELVEEMNKEIQ--EKGQQKLPKMVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLV 956
            QEL+E++ +E    E   ++  K+V G+GV KYN+LR+RQIKLETEAWEEAA EYQELLV
Sbjct: 120  QELLEDLIRENNKVESHFKQPKKVVAGIGVGKYNLLRKRQIKLETEAWEEAANEYQELLV 179

Query: 955  DMCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVI 776
            DMCEQKLAPNLPY+KSLFLGWFEPLR+AIA +QE C++  NR S+AP  D LP+  MAVI
Sbjct: 180  DMCEQKLAPNLPYIKSLFLGWFEPLRNAIAEDQEACRQPNNRVSHAPYIDHLPADKMAVI 239

Query: 775  T-XXXXXXXXXXXXXXGSARVVQAACHIGEAIEQEARIHRFLEKT-KTKNALNRSSEEEP 602
            T               GS RVVQAAC IGEAIE E RIHRFLEKT K KN  ++  E+E 
Sbjct: 240  TMHKLMGLLMTNNGGVGSVRVVQAACAIGEAIENEVRIHRFLEKTKKKKNPTDKKPEDES 299

Query: 601  DPAV---------------KEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQV 467
            DP +               KEQ+RLRKKVN L+KKQK+ QVR+IVK+Q+DLKPWGQ+A V
Sbjct: 300  DPVIIEQEQLMISEQEKLTKEQQRLRKKVNKLIKKQKMKQVREIVKEQEDLKPWGQEAHV 359

Query: 466  KIGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPL 293
            K+GCRLIQ+LM+TA+IQPPVDQ  D P DIRPAFVH LKT+  +TQ+ SRRYGVIECDPL
Sbjct: 360  KVGCRLIQLLMDTAYIQPPVDQSGDDPLDIRPAFVHVLKTITKDTQKTSRRYGVIECDPL 419

Query: 292  VRKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRK 113
            VRKG+EK+ARHMVIPYMPMLVPP++WTGYDRGAYLFLPSY+MRTHGAKQQR+ VKR PR 
Sbjct: 420  VRKGMEKSARHMVIPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQRQVVKRTPRT 479

Query: 112  QLEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            QLEPVFEAL+TLG+TKW+VNKR+LGV+DRIWASG R
Sbjct: 480  QLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGR 515


>gb|KJB50511.1| hypothetical protein B456_008G174700 [Gossypium raimondii]
          Length = 964

 Score =  551 bits (1420), Expect = e-154
 Identities = 306/506 (60%), Positives = 361/506 (71%), Gaps = 20/506 (3%)
 Frame = -2

Query: 1462 MWRNLSKQSS-LRKFNFFSES-HSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQEL 1289
            MWR+L KQ+S   K  F  ES  SSL    S    Q   F+ +  P    ++  +    L
Sbjct: 1    MWRSLLKQASHTHKSKFVPESCTSSLSSSSSTGFCQTSAFINKFRPSKAINHGFSGCPIL 60

Query: 1288 GFSRDYSFWRNQK--IGRHKFAISSEPF---GSTWSSRDYXXXXXXXXXXXXE--DVDEI 1130
            GF  +Y F  +QK  +GR  F+ S  P    G  W+ + Y            +    +EI
Sbjct: 61   GFRENYVF-PSQKDCLGRFGFSHSGNPLTFSGKFWNFKGYASAAEAIVSNEDDLSGSEEI 119

Query: 1129 QELVEEMNKEIQEKGQQKLPK-MVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVD 953
             ELVE M KE +++   K PK MVGGMGVAKYN L+RRQIK+ETEAWEEAAKEYQEL+ D
Sbjct: 120  NELVEAMIKEERKESFSKQPKIMVGGMGVAKYNTLKRRQIKIETEAWEEAAKEYQELIAD 179

Query: 952  MCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVIT 773
            MC+QKLAPNLPYVKSLFLGWFEPLRD+IAAEQE+CK G  + S+A  F+ L + MMAV+T
Sbjct: 180  MCQQKLAPNLPYVKSLFLGWFEPLRDSIAAEQEVCK-GNFKISHAAYFNELSADMMAVVT 238

Query: 772  XXXXXXXXXXXXXXGSA-RVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSEEEPDP 596
                              RVVQAAC IGEAIE EARI +FLEKTK KN  ++ S  E +P
Sbjct: 239  MHKLMGLLMTNTAGTGGIRVVQAACQIGEAIENEARIQKFLEKTKKKNTTDKKSVTESEP 298

Query: 595  AVKEQ-------ERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQIL 437
               EQ       E+LRKKV  LMKKQK+HQVR+IVK +D  KPWGQ+A VK+GCRLIQ+L
Sbjct: 299  ETTEQGKLAKNEEKLRKKVTQLMKKQKVHQVREIVKGRDTSKPWGQEAHVKVGCRLIQLL 358

Query: 436  METAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLVRKGLEKTAR 263
            ME A+IQPPVDQ+ DGPPDIRPAFVH+LK V  +  +GSRRYGVIECDPLVRKGLEKTA+
Sbjct: 359  MENAYIQPPVDQIGDGPPDIRPAFVHALKNVIKDGNKGSRRYGVIECDPLVRKGLEKTAK 418

Query: 262  HMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFEALN 83
            HMVIPYMPMLVPP +WTGYD+GAYLFLPSY+MRTHGAKQQRE VKR PRKQLEPVFEAL+
Sbjct: 419  HMVIPYMPMLVPPQNWTGYDQGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPVFEALD 478

Query: 82   TLGNTKWKVNKRILGVVDRIWASGDR 5
            TLGNTKW++N+RILGVVDR+WA+G R
Sbjct: 479  TLGNTKWRINRRILGVVDRLWANGGR 504


>ref|XP_012438460.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X1
            [Gossypium raimondii] gi|763783438|gb|KJB50509.1|
            hypothetical protein B456_008G174700 [Gossypium
            raimondii]
          Length = 996

 Score =  551 bits (1420), Expect = e-154
 Identities = 306/506 (60%), Positives = 361/506 (71%), Gaps = 20/506 (3%)
 Frame = -2

Query: 1462 MWRNLSKQSS-LRKFNFFSES-HSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQEL 1289
            MWR+L KQ+S   K  F  ES  SSL    S    Q   F+ +  P    ++  +    L
Sbjct: 1    MWRSLLKQASHTHKSKFVPESCTSSLSSSSSTGFCQTSAFINKFRPSKAINHGFSGCPIL 60

Query: 1288 GFSRDYSFWRNQK--IGRHKFAISSEPF---GSTWSSRDYXXXXXXXXXXXXE--DVDEI 1130
            GF  +Y F  +QK  +GR  F+ S  P    G  W+ + Y            +    +EI
Sbjct: 61   GFRENYVF-PSQKDCLGRFGFSHSGNPLTFSGKFWNFKGYASAAEAIVSNEDDLSGSEEI 119

Query: 1129 QELVEEMNKEIQEKGQQKLPK-MVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVD 953
             ELVE M KE +++   K PK MVGGMGVAKYN L+RRQIK+ETEAWEEAAKEYQEL+ D
Sbjct: 120  NELVEAMIKEERKESFSKQPKIMVGGMGVAKYNTLKRRQIKIETEAWEEAAKEYQELIAD 179

Query: 952  MCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVIT 773
            MC+QKLAPNLPYVKSLFLGWFEPLRD+IAAEQE+CK G  + S+A  F+ L + MMAV+T
Sbjct: 180  MCQQKLAPNLPYVKSLFLGWFEPLRDSIAAEQEVCK-GNFKISHAAYFNELSADMMAVVT 238

Query: 772  XXXXXXXXXXXXXXGSA-RVVQAACHIGEAIEQEARIHRFLEKTKTKNALNRSSEEEPDP 596
                              RVVQAAC IGEAIE EARI +FLEKTK KN  ++ S  E +P
Sbjct: 239  MHKLMGLLMTNTAGTGGIRVVQAACQIGEAIENEARIQKFLEKTKKKNTTDKKSVTESEP 298

Query: 595  AVKEQ-------ERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVKIGCRLIQIL 437
               EQ       E+LRKKV  LMKKQK+HQVR+IVK +D  KPWGQ+A VK+GCRLIQ+L
Sbjct: 299  ETTEQGKLAKNEEKLRKKVTQLMKKQKVHQVREIVKGRDTSKPWGQEAHVKVGCRLIQLL 358

Query: 436  METAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLVRKGLEKTAR 263
            ME A+IQPPVDQ+ DGPPDIRPAFVH+LK V  +  +GSRRYGVIECDPLVRKGLEKTA+
Sbjct: 359  MENAYIQPPVDQIGDGPPDIRPAFVHALKNVIKDGNKGSRRYGVIECDPLVRKGLEKTAK 418

Query: 262  HMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQLEPVFEALN 83
            HMVIPYMPMLVPP +WTGYD+GAYLFLPSY+MRTHGAKQQRE VKR PRKQLEPVFEAL+
Sbjct: 419  HMVIPYMPMLVPPQNWTGYDQGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPVFEALD 478

Query: 82   TLGNTKWKVNKRILGVVDRIWASGDR 5
            TLGNTKW++N+RILGVVDR+WA+G R
Sbjct: 479  TLGNTKWRINRRILGVVDRLWANGGR 504


>ref|XP_008339743.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Malus
            domestica]
          Length = 1007

 Score =  548 bits (1412), Expect = e-153
 Identities = 296/515 (57%), Positives = 369/515 (71%), Gaps = 29/515 (5%)
 Frame = -2

Query: 1462 MWRNLSKQSSLRKFNFFSESHSSLPVFCSVRSHQDLNFVERSVPLDLKDYVNTQNQELGF 1283
            MWRN +K+ + RK N  S+ H       SV+  Q+ +F++++   + ++ VN++   +GF
Sbjct: 1    MWRNFAKKVASRKANPSSQFHLGSATSSSVKFSQESSFIKKTRHFEARNCVNSRLLVMGF 60

Query: 1282 SR-DYSFWRNQKIGRHKFAISSEPFGSTWS---SRDYXXXXXXXXXXXXEDV----DEIQ 1127
             +   +  +  ++GR      S   G +     +R Y            ++     +EIQ
Sbjct: 61   RKIGDTASQKDELGRCSLLNPSYFHGVSGFCSYARGYASAAEAIASTDGDEESSGSEEIQ 120

Query: 1126 ELVEEMNKEIQE-KGQQKLPK-MVGGMGVAKYNMLRRRQIKLETEAWEEAAKEYQELLVD 953
            EL+E++ +E  + +   K PK +V G+GV KYN LR+RQIKLETEAWEEAA EYQELLVD
Sbjct: 121  ELLEDLIRENNKVESHFKQPKKVVAGIGVGKYNXLRKRQIKLETEAWEEAANEYQELLVD 180

Query: 952  MCEQKLAPNLPYVKSLFLGWFEPLRDAIAAEQELCKKGKNRKSYAPNFDILPSGMMAVIT 773
            MCEQKLAPNLPY+KSLFLGWFEPLR+AIA +QE C++  NR S+AP  D+LP+  MAVIT
Sbjct: 181  MCEQKLAPNLPYIKSLFLGWFEPLRNAIAEDQEACRQPHNRVSHAPYIDLLPADKMAVIT 240

Query: 772  XXXXXXXXXXXXXXG-SARVVQAACHIGEAIEQEARIHRFLEKTKTK-NALNRSSEEEPD 599
                            S RVVQAAC IGEAIE E RIHRFL+KTK K N  ++  E+E D
Sbjct: 241  MHKLMGLLMTNNGGVGSVRVVQAACAIGEAIENEVRIHRFLDKTKKKKNPTDKKPEDESD 300

Query: 598  PAV---------------KEQERLRKKVNILMKKQKLHQVRKIVKQQDDLKPWGQDAQVK 464
            P +               KEQERLRKKVN L+KKQK+ QVR+IVK+Q+DLKPWGQ+A VK
Sbjct: 301  PVIIEQEQLSISEQEKLTKEQERLRKKVNKLIKKQKMKQVREIVKEQEDLKPWGQEAHVK 360

Query: 463  IGCRLIQILMETAHIQPPVDQLEDGPPDIRPAFVHSLKTV--ETQRGSRRYGVIECDPLV 290
            +GCRLIQ+LM+TA+IQPPVDQ  D P DIRPAFVH LKT+  +TQ+ SRRYGVIECDPLV
Sbjct: 361  VGCRLIQLLMDTAYIQPPVDQSGDDPLDIRPAFVHVLKTITKDTQKTSRRYGVIECDPLV 420

Query: 289  RKGLEKTARHMVIPYMPMLVPPLHWTGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPRKQ 110
            RKG+EK+ARHMVIPYMPMLVPP++WTGYDRGAYLFLPSY+MRTHGAKQQR+ VKR PR Q
Sbjct: 421  RKGMEKSARHMVIPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQRQVVKRTPRXQ 480

Query: 109  LEPVFEALNTLGNTKWKVNKRILGVVDRIWASGDR 5
            LEPVFEAL+TLG+TKW+VNKR+LGV+DRIWASG R
Sbjct: 481  LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGR 515