BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00012458
         (1163 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   127   3e-56
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   124   2e-54
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   136   4e-53
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   136   5e-53
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   130   4e-52
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   111   6e-52
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   119   7e-52
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   120   1e-50
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   107   4e-50
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        108   7e-49
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   122   2e-48
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        125   2e-48
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   123   2e-48
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    112   3e-48
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   120   1e-47
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   120   1e-47
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         121   1e-47
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           121   1e-47
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   120   1e-47
emb|CDP17738.1| unnamed protein product [Coffea canephora]            119   2e-47

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttatus]
          Length = 598

 Score =  127 bits (318), Expect(3) = 3e-56
 Identities = 75/186 (40%), Positives = 108/186 (58%), Gaps = 4/186 (2%)
 Frame = +2

Query: 413 GTMWPLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLK 592
           GTM  + + G+G+V LKF +G + TL  VR+VP L+ NLIS   L++ G  G +GDG + 
Sbjct: 50  GTM--IVVNGIGTVCLKFVSGSVLTLKNVRHVPTLSHNLISCAVLEDDGFRGDWGDGCMN 107

Query: 593 VIKGSLVIFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQK 772
           ++KGS  +FK  +   +YV  AE+ S   N V          WH  L H+S K L IL K
Sbjct: 108 IMKGSRYLFKALRMGNMYVCSAES-SASMNVVQNDLSEL---WHKGLGHMSNKWLSILHK 163

Query: 773 QGFFFCKNVISKVPCCEHCTIGKH-HIL---HFSIGSHKTTSVLEYINSDLWGPSSVSTQ 940
              +F  + +S V  C+ C +GK  H+L   + S    + T +LEYI++D+WGP+SV T 
Sbjct: 164 NQ-YFGNDKVSSVTLCDSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTY 222

Query: 941 *GNKYF 958
            GN+YF
Sbjct: 223 GGNRYF 228



 Score =  108 bits (269), Expect(3) = 3e-56
 Identities = 50/69 (72%), Positives = 60/69 (86%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            FLS+IDD+SRKV++FLLKQKSD F++FKTWKTLIENQT K+IK LRTDNG+EF N +F +
Sbjct: 228  FLSIIDDYSRKVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDN 287

Query: 1137 LCDESGILR 1163
            LC  SGI R
Sbjct: 288  LCANSGIRR 296



 Score = 33.5 bits (75), Expect(3) = 3e-56
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGN 417
           EW+LDS C++HMT RR+   ++  + +  V + +
Sbjct: 16  EWLLDSACSYHMTPRREVFSDYVQMKNCGVTLAD 49


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  124 bits (310), Expect(3) = 2e-54
 Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
 Frame = +2

Query: 434 IKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSLV 613
           +KG+GS+ ++  +G    L  VRY+P++ RNLIS+G L++ G   K  DG+LK++KG   
Sbjct: 323 VKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCST 382

Query: 614 IFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFCK 793
           I KG KR+ +Y+    T    S++         L WH+RL H+S+KG+ IL K+G    +
Sbjct: 383 ILKGQKRDTLYILDGVTEEGESHSSAEVKDETAL-WHSRLGHMSQKGMEILVKKG-CLRR 440

Query: 794 NVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWG-PSSVSTQ*GNKYF 958
            VI ++  CE C  GK H + F+   H T   L Y++SDLWG P + ++   ++YF
Sbjct: 441 EVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYF 496



 Score = 89.7 bits (221), Expect(3) = 2e-54
 Identities = 37/69 (53%), Positives = 52/69 (75%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F+S +DD+SRKVWI+ L++K + FE+F  WK ++ENQ+ +K+K LRTDNGLE+ N  F  
Sbjct: 496  FISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEK 555

Query: 1137 LCDESGILR 1163
             C E GI+R
Sbjct: 556  FCKEEGIVR 564



 Score = 48.9 bits (115), Expect(3) = 2e-54
 Identities = 20/41 (48%), Positives = 31/41 (75%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNNVASKNK 438
           EW+LD+GC+FHMT R+D  ++FK+++S  V +GN+  S  K
Sbjct: 284 EWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVK 324


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  136 bits (342), Expect(3) = 4e-53
 Identities = 81/215 (37%), Positives = 117/215 (54%)
 Frame = +2

Query: 314 KNGSWIQVALSI*HLGEIDFRILKILLHGKF**GTMWPLKIKGVGSVTLKFENGFICTLD 493
           ++G  IQ AL    L ++  +  K    G    G     KI G G+V +K  +G    L+
Sbjct: 259 RSGYLIQGALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLE 318

Query: 494 RVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSLVIFKGFKRNGIYVTKAETMSQ 673
            VRY+P+L RNLIS+G LD+ G   K     L+V +GSL + KG  +NG+Y    +T++ 
Sbjct: 319 DVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTG 378

Query: 674 FSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFCKNVISKVPCCEHCTIGKHHIL 853
             +TV          WH RL H+S +GL  L+KQG       ++ +P CEHC  GK   +
Sbjct: 379 KVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQG-VLGNYKLTDLPFCEHCVFGKATRV 437

Query: 854 HFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNKYF 958
            F+   H+T + L+YI+SDLWGPS V +  G +YF
Sbjct: 438 KFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYF 472



 Score = 98.2 bits (243), Expect(3) = 4e-53
 Identities = 44/69 (63%), Positives = 56/69 (81%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            FL+LIDD+SRKVWI+ LK KS+TF +FK WK L+E QT +K+K LRTDNGLEF ++DF+ 
Sbjct: 472  FLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNS 531

Query: 1137 LCDESGILR 1163
            LC + GI R
Sbjct: 532  LCQKEGIAR 540



 Score = 23.9 bits (50), Expect(3) = 4e-53
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 147 CGKIGHFIKDCYKRKNS 197
           C K GHF KDC  R+ +
Sbjct: 230 CHKEGHFKKDCPDRRQN 246


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  136 bits (342), Expect(3) = 5e-53
 Identities = 79/177 (44%), Positives = 101/177 (57%)
 Frame = +2

Query: 428  LKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGS 607
            L +KG GSV +K  +G + TL+   YVP L +NLISVG LD+ G       G+L+V KG+
Sbjct: 655  LGVKGSGSVQIKMYDGLVRTLN-AWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGA 713

Query: 608  LVIFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFF 787
            LV+ KG  ++GIY       S    T           WH RL H+SEKGL IL KQG   
Sbjct: 714  LVVMKGRLQHGIYTLMG---SSVLGTAAVEEDNCTELWHRRLGHMSEKGLSILSKQGLLS 770

Query: 788  CKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNKYF 958
                  K+  CE C +GK   + FS+GSH T  VLEYI+SDLWGPS V +  G +Y+
Sbjct: 771  GAET-GKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYY 826



 Score = 91.3 bits (225), Expect(3) = 5e-53
 Identities = 38/69 (55%), Positives = 51/69 (73%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            +++ IDDFSRKVW++ LK K + F +FK WKT++E +T K +K LRTDNGLEF N DF  
Sbjct: 826  YVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDE 885

Query: 1137 LCDESGILR 1163
             C + GI+R
Sbjct: 886  FCRKEGIVR 894



 Score = 30.4 bits (67), Expect(3) = 5e-53
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 313 QEWILDSGCTFHMTSRRD*LQNFKD 387
           + WILD+G ++HM   RD    FK+
Sbjct: 618 ESWILDTGASYHMAYSRDLFTTFKE 642


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  130 bits (326), Expect(3) = 4e-52
 Identities = 75/182 (41%), Positives = 102/182 (56%), Gaps = 1/182 (0%)
 Frame = +2

Query: 413 GTMWPLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLK 592
           G   P K+ GVG++ +K  +G I TL  VR++P L RNLIS+  LD  G     GDG+LK
Sbjct: 273 GDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILK 332

Query: 593 VIKGSLVIFKG-FKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQ 769
           V KGSLV+ K   K   +Y  +  T+      V        L WH RL H+SE GL  L 
Sbjct: 333 VTKGSLVVMKADIKNADLYHLQGTTIVGNVAAVTDSLSNSDL-WHMRLGHMSEIGLAELS 391

Query: 770 KQGFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           K+G    +N I K+  CEHC  GKH  + F+  +H T  +L+Y++SDLWGP+   +  G 
Sbjct: 392 KRGLLDGQN-IGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGA 450

Query: 950 KY 955
           +Y
Sbjct: 451 RY 452



 Score = 82.8 bits (203), Expect(3) = 4e-52
 Identities = 35/68 (51%), Positives = 49/68 (72%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            ++++DD+SRKVW + LK K + F  FK WKT++E QT +K+KVLRTDNG+EF +  F   
Sbjct: 454  MTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSY 513

Query: 1140 CDESGILR 1163
            C   GI+R
Sbjct: 514  CRSEGIVR 521



 Score = 42.0 bits (97), Expect(3) = 4e-52
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNNVASK 432
           EW+LD+GCT+HM   RD    ++ +    VL+G+N   K
Sbjct: 241 EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCK 279


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  111 bits (277), Expect(4) = 6e-52
 Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 2/176 (1%)
 Frame = +2

Query: 437 KGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSLVI 616
           +G G++ +    G I  L+ V+YVP L RNLIS G LD+LG   + G+G ++  K +   
Sbjct: 347 QGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTA 406

Query: 617 FKGFKRNGIYVTKAET-MSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFCK 793
            +G   NG+YV    T MS+  N            WH+RL H+S   L +L  +G    K
Sbjct: 407 LRGSLSNGLYVLDGSTVMSELCNA--ETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRK 464

Query: 794 NVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWG-PSSVSTQ*GNKYF 958
             I+++  CEHC +GK   + F++G H +   L Y+++DLWG P+   +  G +YF
Sbjct: 465 E-INELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYF 519



 Score = 92.4 bits (228), Expect(4) = 6e-52
 Identities = 42/69 (60%), Positives = 52/69 (75%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            FLS+IDD +RKVW++ LK K +TF++F  WK+L+ENQ  KK+K LRTDNGLEF NS F  
Sbjct: 519  FLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDS 578

Query: 1137 LCDESGILR 1163
             C E GI R
Sbjct: 579  YCKEHGIER 587



 Score = 45.1 bits (105), Expect(4) = 6e-52
 Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
 Frame = +1

Query: 277 FAANIADNHEKIQE-WILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           F+  ++ N + +++ WILDSGCT HMTSRRD   +F++  +  +L+G++
Sbjct: 293 FSEALSVNEQMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDD 341



 Score = 26.2 bits (56), Expect(4) = 6e-52
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 147 CGKIGHFIKDCYKRK 191
           C K GH  KDCY RK
Sbjct: 259 CKKEGHVKKDCYSRK 273


>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC103833265 [Brassica rapa]
          Length = 3353

 Score =  119 bits (298), Expect(4) = 7e-52
 Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
 Frame = +2

Query: 431 KIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSL 610
           ++KG+G + +  E+G    L  VRY+PD++RNLIS G L++ G   + GD  +   K   
Sbjct: 259 EVKGIGKIRITNEDGTEVILRDVRYMPDMSRNLISYGMLEKSGCNYQGGDFTITFYKEGQ 318

Query: 611 VIFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFC 790
            +  G   NG+Y  +  T+S+    +          WHTRL H+S K + +L K+GF   
Sbjct: 319 KVITGKYENGLYYLQG-TVSRGEANISESTDSKTKVWHTRLGHMSSKNMELLAKEGFI-P 376

Query: 791 KNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWG-PSSVSTQ*GNKYF 958
           K  + K+  CE C +GK H L F    H T  +LEY++SDLWG PS+  +  G KYF
Sbjct: 377 KTEVGKLEFCEGCVLGKKHKLSFPTAKHTTKGILEYVHSDLWGSPSTPGSLGGCKYF 433



 Score =  119 bits (298), Expect(4) = 7e-52
 Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
 Frame = +2

Query: 431  KIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSL 610
            ++KG+G + +  E+G    L  VRY+PD++RNLIS G L++ G   + GD  +   K   
Sbjct: 2334 EVKGIGKIRITNEDGTEVILRDVRYMPDMSRNLISYGMLEKSGCNYQGGDFTITFYKEGQ 2393

Query: 611  VIFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFC 790
             +  G   NG+Y  +  T+S+    +          WHTRL H+S K + +L K+GF   
Sbjct: 2394 KVITGKYENGLYYLQG-TVSRGEANISESTDSKTKVWHTRLGHMSSKNMELLAKEGFI-P 2451

Query: 791  KNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWG-PSSVSTQ*GNKYF 958
            K  + K+  CE C +GK H L F    H T  +LEY++SDLWG PS+  +  G KYF
Sbjct: 2452 KTEVGKLEFCEGCVLGKKHKLSFPTAKHTTKGILEYVHSDLWGSPSTPGSLGGCKYF 2508



 Score = 89.7 bits (221), Expect(4) = 7e-52
 Identities = 40/69 (57%), Positives = 50/69 (72%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F+S IDDFS+KVW++ L+ K + F +FK WK  +E+ T KKIK LRTDNGLEF N+ F  
Sbjct: 433  FISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKKIKCLRTDNGLEFCNNRFDE 492

Query: 1137 LCDESGILR 1163
            LC  SGI R
Sbjct: 493  LCRTSGIKR 501



 Score = 89.7 bits (221), Expect(4) = 7e-52
 Identities = 40/69 (57%), Positives = 50/69 (72%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F+S IDDFS+KVW++ L+ K + F +FK WK  +E+ T KKIK LRTDNGLEF N+ F  
Sbjct: 2508 FISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKKIKCLRTDNGLEFCNNRFDE 2567

Query: 1137 LCDESGILR 1163
            LC  SGI R
Sbjct: 2568 LCRTSGIKR 2576



 Score = 42.0 bits (97), Expect(4) = 7e-52
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +1

Query: 292 ADNHEKIQEWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNNVASKNK 438
           A  H+   EW+LDSGCTFH+T  ++ L + ++    +VL+ NN   + K
Sbjct: 213 ASIHDSRNEWVLDSGCTFHITPDKEVLFDLQEGDGSKVLMANNTQCEVK 261



 Score = 42.0 bits (97), Expect(4) = 7e-52
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +1

Query: 292  ADNHEKIQEWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNNVASKNK 438
            A  H+   EW+LDSGCTFH+T  ++ L + ++    +VL+ NN   + K
Sbjct: 2288 ASIHDSRNEWVLDSGCTFHITPDKEVLFDLQEGDGSKVLMANNTQCEVK 2336



 Score = 23.5 bits (49), Expect(4) = 7e-52
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 141 YGCGKIGHFIKDC 179
           + CGK GH+ +DC
Sbjct: 174 FSCGKEGHWKRDC 186



 Score = 23.5 bits (49), Expect(4) = 7e-52
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 141  YGCGKIGHFIKDC 179
            + CGK GH+ +DC
Sbjct: 2249 FSCGKEGHWKRDC 2261


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  120 bits (302), Expect(3) = 1e-50
 Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
 Frame = +2

Query: 431 KIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSL 610
           K+ G GS+ ++  +G  CTL+ VR+VP + +NLIS+  LD  G      DG+L+V KGS 
Sbjct: 316 KVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSN 375

Query: 611 VIFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLK--WHTRLAHVSEKGLHILQKQGFF 784
           +I KG  R  +Y  +  T++  ++          +   WH RL H+ E+G+ IL K+   
Sbjct: 376 LILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKED-L 434

Query: 785 FCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNKYF 958
              + +  +  CEHC  GK H   F    H+T   L+YI+SD WGP  V +  G ++F
Sbjct: 435 LAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFF 492



 Score = 92.4 bits (228), Expect(3) = 1e-50
 Identities = 40/69 (57%), Positives = 53/69 (76%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F+S+IDD+SR  W++++K KS+ F++FK WK L+ENQT KKIK LRTDNGLEF  S+F  
Sbjct: 492  FVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQ 551

Query: 1137 LCDESGILR 1163
             C + GI R
Sbjct: 552  FCKDEGIAR 560



 Score = 36.6 bits (83), Expect(3) = 1e-50
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 226 ESNTVDVYVATEPIN-DHFAANIADNHEKIQE-WILDSGCTFHMTSRRD*LQNFKDIASW 399
           E  +V   VA E  N +   A +AD H    + W+LDSG ++H+  RR+    ++ +   
Sbjct: 246 EKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGG 305

Query: 400 EVLIGNNVASK 432
            + + N+   K
Sbjct: 306 SISMANSSVCK 316


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
           gi|7268932|emb|CAB79135.1| putative transposable element
           [Arabidopsis thaliana]
          Length = 1308

 Score =  107 bits (268), Expect(4) = 4e-50
 Identities = 63/161 (39%), Positives = 88/161 (54%)
 Frame = +2

Query: 437 KGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSLVI 616
           KG G+V +    G I  L  VR+VP+L RNLIS G LD+LG   + GDG ++  K +   
Sbjct: 348 KGSGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTA 407

Query: 617 FKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFCKN 796
             G   NG+YV    T+   +  V        L WH RL H+S   + IL ++G    K+
Sbjct: 408 LCGNLVNGLYVLDGHTVVNENCNVEGSNEKTEL-WHCRLGHMSLNNMKILAEKGLLEKKD 466

Query: 797 VISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWG 919
            I ++  CE+C +GK   L F++G H T  VL YI++DLWG
Sbjct: 467 -IKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWG 506



 Score = 93.6 bits (231), Expect(4) = 4e-50
 Identities = 43/69 (62%), Positives = 51/69 (73%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            FLS+IDD SRKVW+  LK K +TFERF  WK L+ENQ  KK+K+LRTDNGLEF N  F  
Sbjct: 510  FLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDE 569

Query: 1137 LCDESGILR 1163
             C ++GI R
Sbjct: 570  FCKQNGIER 578



 Score = 44.3 bits (103), Expect(4) = 4e-50
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = +1

Query: 250 VATEPINDHFAANIADNHEKIQEWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNNVAS 429
           V TE +    A ++ D   K  +W++DSGCT+HMTSR D    F +  +  +L+G++   
Sbjct: 287 VITEKLVYSEALSMYDQEAK-DKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTV 345

Query: 430 KNK 438
           ++K
Sbjct: 346 ESK 348



 Score = 23.1 bits (48), Expect(4) = 4e-50
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 147 CGKIGHFIKDCYKRK 191
           C K GH  KDCY  K
Sbjct: 260 CKKEGHVKKDCYAGK 274


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  108 bits (271), Expect(4) = 7e-49
 Identities = 61/158 (38%), Positives = 84/158 (53%)
 Frame = +2

Query: 485 TLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGSLVIFKGFKRNGIYVTKAET 664
           +L  VR+ P L RNLIS+G LD LG   K   G L+V KG+ ++ KG   NG+YV +  +
Sbjct: 348 SLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSS 407

Query: 665 MSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFFCKNVISKVPCCEHCTIGKH 844
           +                 WH RL H+S KGL  L KQG     + I ++  CE+C  GK 
Sbjct: 408 VPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQG-LLGGDRIQQLEFCENCIFGKS 466

Query: 845 HILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNKYF 958
           H   F+ G H +  VL+Y + D WGP+ V +  G +YF
Sbjct: 467 HRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYF 504



 Score = 88.6 bits (218), Expect(4) = 7e-49
 Identities = 40/69 (57%), Positives = 51/69 (73%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F+SLIDD+SRKVWI++LK K    E+FK WK+L+ENQ+  K+K LRTDNGLEF +  F  
Sbjct: 504  FMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEE 563

Query: 1137 LCDESGILR 1163
             C + GI R
Sbjct: 564  YCQKHGIKR 572



 Score = 39.7 bits (91), Expect(4) = 7e-49
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 241 DVYVATEPINDHFAAN---IADNHEKIQEWILDSGCTFHMTSRRD*LQNFKDIASWEVLI 411
           D  VA++  +D + +    +A N     +W++DSGC+FH+   +     ++ +    VL+
Sbjct: 263 DAAVASDDGSDGYQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLM 322

Query: 412 GNNVASKNKRGW*C 453
           GNN        W C
Sbjct: 323 GNNNVCNIVGIWFC 336



 Score = 27.3 bits (59), Expect(4) = 7e-49
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 138 FYGCGKIGHFIKDCYKRK 191
           FY C K GH+I+DC+++K
Sbjct: 237 FY-CRKEGHYIRDCFEKK 253


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  122 bits (305), Expect(3) = 2e-48
 Identities = 68/182 (37%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P K  G+GS+ L+  +G    L  VRYVP L +NLIS+G L+  G+     DG+LK   G
Sbjct: 259 PCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLG 318

Query: 605 SLVIFKGFKRNGIYV----TKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQK 772
           +LV+ KG  +N +Y     T   T++  +++         L WH RL H  EK L IL K
Sbjct: 319 ALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKL-WHMRLGHAGEKSLQILTK 377

Query: 773 QGFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNK 952
           QG         K+  CEHC +GK   + F    H T  +L+Y++SD+WGP+   +  G  
Sbjct: 378 QGLLKGTKA-CKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRH 436

Query: 953 YF 958
           YF
Sbjct: 437 YF 438



 Score = 81.3 bits (199), Expect(3) = 2e-48
 Identities = 34/69 (49%), Positives = 50/69 (72%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F++ +DDFSR+VW+F +K K+D  E F  WK  +EN T +KIKVL+TDNG E+ +  F +
Sbjct: 438  FVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLN 497

Query: 1137 LCDESGILR 1163
            +C + GI+R
Sbjct: 498  VCQDCGIVR 506



 Score = 39.7 bits (91), Expect(3) = 2e-48
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           EWILDSGCT+HM   RD    F+++    V +GN+
Sbjct: 223 EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGND 257


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  125 bits (313), Expect(3) = 2e-48
 Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P ++ G+G+V +K  +G I TL  VR++P+L R+LIS+  LD  G     GDG+LKV KG
Sbjct: 335 PCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 394

Query: 605 SLVIFK-GFKRNGIYVTKAETMSQFSNTVXXXXXXXXLK--WHTRLAHVSEKGLHILQKQ 775
           SLV+ K   K   +Y  +  T+     TV            WH RL H+SE GL  L K+
Sbjct: 395 SLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKR 454

Query: 776 GFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNKY 955
           G    ++ ISK+  CEHC  GKH  + F+  +H T  +L+Y++SDLWGP+  ++  G +Y
Sbjct: 455 GLLDGQS-ISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARY 513



 Score = 82.4 bits (202), Expect(3) = 2e-48
 Identities = 34/68 (50%), Positives = 48/68 (70%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            ++++DD+SRKVW + LK K   F  FK WKT++E QT +K+K+LRTDNG+EF +  F   
Sbjct: 515  MTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 574

Query: 1140 CDESGILR 1163
            C   GI+R
Sbjct: 575  CKSEGIVR 582



 Score = 35.0 bits (79), Expect(3) = 2e-48
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           +WILD+ CT+HM   RD    ++ +    VL+G++
Sbjct: 299 QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDD 333


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  123 bits (309), Expect(3) = 2e-48
 Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 5/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P ++ G+G+V +K  +G I TL  VR++P+L R+LIS   LD  G     GDG+LKV KG
Sbjct: 301 PCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKG 360

Query: 605 SLVIFKG-FKRNGIYVTKAET----MSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQ 769
           SLV+ K   K   +Y  +  T    ++  S+++          WH RL H+SE GL  L 
Sbjct: 361 SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL--WHMRLGHMSEIGLAELS 418

Query: 770 KQGFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           K+G  + ++ I K+  CEHC  GKH  + F+  +H T  +L+Y++SDLWGP+  ++  G 
Sbjct: 419 KRGLLYGQS-IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 477

Query: 950 KY 955
           +Y
Sbjct: 478 RY 479



 Score = 83.2 bits (204), Expect(3) = 2e-48
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            ++++DD+SRKVW + LK K   F+ FK WKT++E QT +K+K+LRTDNG+EF +  F   
Sbjct: 481  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 540

Query: 1140 CDESGILR 1163
            C   GI+R
Sbjct: 541  CKSEGIVR 548



 Score = 35.8 bits (81), Expect(3) = 2e-48
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           +WILD+ CT+HM   RD    ++ +    VL+G++
Sbjct: 265 QWILDTACTYHMCPNRDWFATYETVQGGTVLMGDD 299


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  112 bits (281), Expect(3) = 3e-48
 Identities = 61/178 (34%), Positives = 97/178 (54%), Gaps = 1/178 (0%)
 Frame = +2

Query: 428 LKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKGS 607
           +K +G GS+ ++   G I  L+ V+YVP+L RNLIS G LD+ G   + GDG ++  K  
Sbjct: 354 VKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKNQ 413

Query: 608 LVIFKGFKRNGIYVTKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQKQGFFF 787
               +G   NG+Y+    T+   +           L WH+RL H+    + +L  +G   
Sbjct: 414 KTALRGELVNGLYILDGNTVLSETCVAEGSKGKTEL-WHSRLGHIGLNNMKVLAGKG-LV 471

Query: 788 CKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVS-TQ*GNKYF 958
            K  I  +  CE+C +GK   + F++G H +  VL Y+++DLWG ++V+ +  GNKYF
Sbjct: 472 SKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVLRYVHADLWGSTNVTPSLSGNKYF 529



 Score = 89.0 bits (219), Expect(3) = 3e-48
 Identities = 41/69 (59%), Positives = 50/69 (72%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            FLS+IDD +RKVW++ L+ K +TF+RF  WK L+ENQ  KK+K LRTDNGLEF N  F  
Sbjct: 529  FLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLEFCNLKFDA 588

Query: 1137 LCDESGILR 1163
             C E GI R
Sbjct: 589  YCKEHGIER 597



 Score = 40.4 bits (93), Expect(3) = 3e-48
 Identities = 16/40 (40%), Positives = 29/40 (72%)
 Frame = +1

Query: 319 WILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNNVASKNK 438
           W+LDSGCT HM++RRD   +F++     +L+G++ + K++
Sbjct: 318 WVLDSGCTSHMSARRDWFCSFREDGGPTILLGDDHSVKSQ 357


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  120 bits (300), Expect(3) = 1e-47
 Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P  I G+GSV +K ++G   TL  VRY+P ++RNLIS+  LD  G      DG+LKV KG
Sbjct: 326 PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 385

Query: 605 SLVIFKGFKRNG-IYVTKAETMSQFSNTVXXXXXXXXLK---WHTRLAHVSEKGLHILQK 772
           SLV  KG   +  +YV +  T++   +           K   WH RL H+S  G+  L K
Sbjct: 386 SLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMK 445

Query: 773 QGFF-FCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           +     C +  SK+  CEHC  GKH  + F+   H T   L+Y+++DLWGPS   +  G 
Sbjct: 446 RNLLKGCTS--SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGA 503

Query: 950 KY 955
           +Y
Sbjct: 504 RY 505



 Score = 85.5 bits (210), Expect(3) = 1e-47
 Identities = 38/68 (55%), Positives = 50/68 (73%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            L++IDD+SRKVW + LK K DTF  FK WK +IE QT +K+K+LRTDNG EF +  F+  
Sbjct: 507  LTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDY 566

Query: 1140 CDESGILR 1163
            C + GI+R
Sbjct: 567  CRQEGIVR 574



 Score = 34.7 bits (78), Expect(3) = 1e-47
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVL 408
           EWILDS C+FH+ ++R+   ++K +   +V+
Sbjct: 289 EWILDSACSFHICTKRNWFSSYKPVQKGDVV 319


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  120 bits (300), Expect(3) = 1e-47
 Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P  I G+GSV +K ++G   TL  VRY+P ++RNLIS+  LD  G      DG+LKV KG
Sbjct: 326 PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 385

Query: 605 SLVIFKGFKRNG-IYVTKAETMSQFSNTVXXXXXXXXLK---WHTRLAHVSEKGLHILQK 772
           SLV  KG   +  +YV +  T++   +           K   WH RL H+S  G+  L K
Sbjct: 386 SLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 445

Query: 773 QGFF-FCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           +     C +  SK+  CEHC  GKH  + F+   H T   L+Y+++DLWGPS   +  G 
Sbjct: 446 RNLLKGCTS--SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGA 503

Query: 950 KY 955
           +Y
Sbjct: 504 RY 505



 Score = 85.5 bits (210), Expect(3) = 1e-47
 Identities = 38/68 (55%), Positives = 50/68 (73%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            L++IDD+SRKVW + LK K DTF  FK WK +IE QT +K+K+LRTDNG EF +  F+  
Sbjct: 507  LTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDY 566

Query: 1140 CDESGILR 1163
            C + GI+R
Sbjct: 567  CRQEGIVR 574



 Score = 34.7 bits (78), Expect(3) = 1e-47
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVL 408
           EWILDS C+FH+ ++R+   ++K +   +V+
Sbjct: 289 EWILDSACSFHICTKRNWFSSYKPVQKGDVV 319


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  121 bits (304), Expect(3) = 1e-47
 Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P ++ G+G V +K  +G I TL  VR++P+L R+LIS+  LD  G     GDG+LKV KG
Sbjct: 167 PCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 226

Query: 605 SLVIFKG-FKRNGIYVTKAET----MSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQ 769
           SLV+ K   K   +Y  +  T    ++  S+++          WH RL H+SE GL  L 
Sbjct: 227 SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL--WHMRLGHMSEIGLAELS 284

Query: 770 KQGFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           K+G    ++ I K+  CEHC  GKH  + F+  +H T  +L+Y++SDLWGP+  ++  G 
Sbjct: 285 KRGLLDGQS-IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 343

Query: 950 KY 955
           +Y
Sbjct: 344 RY 345



 Score = 83.2 bits (204), Expect(3) = 1e-47
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            ++++DD+SRKVW + LK K   F+ FK WKT++E QT +K+K+LRTDNG+EF +  F   
Sbjct: 347  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 406

Query: 1140 CDESGILR 1163
            C   GI+R
Sbjct: 407  CKSEGIVR 414



 Score = 35.4 bits (80), Expect(3) = 1e-47
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           +WILD+ CT+HM   RD    ++ +    VL+G++
Sbjct: 131 QWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDD 165


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  121 bits (304), Expect(3) = 1e-47
 Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P ++ G+G V +K  +G I TL  VR++P+L R+LIS+  LD  G     GDG+LKV KG
Sbjct: 167 PCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKG 226

Query: 605 SLVIFKG-FKRNGIYVTKAET----MSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQ 769
           SLV+ K   K   +Y  +  T    ++  S+++          WH RL H+SE GL  L 
Sbjct: 227 SLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNL--WHMRLGHMSEIGLAELS 284

Query: 770 KQGFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           K+G    ++ I K+  CEHC  GKH  + F+  +H T  +L+Y++SDLWGP+  ++  G 
Sbjct: 285 KRGLLDGQS-IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 343

Query: 950 KY 955
           +Y
Sbjct: 344 RY 345



 Score = 83.2 bits (204), Expect(3) = 1e-47
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            ++++DD+SRKVW + LK K   F+ FK WKT++E QT +K+K+LRTDNG+EF +  F   
Sbjct: 347  MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 406

Query: 1140 CDESGILR 1163
            C   GI+R
Sbjct: 407  CKSEGIVR 414



 Score = 35.4 bits (80), Expect(3) = 1e-47
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           +WILD+ CT+HM   RD    ++ +    VL+G++
Sbjct: 131 QWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDD 165


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  120 bits (300), Expect(3) = 1e-47
 Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P  I G+GSV +K ++G   TL  VRY+P ++RNLIS+  LD  G      DG+LKV KG
Sbjct: 326 PCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKG 385

Query: 605 SLVIFKGFKRNG-IYVTKAETMSQFSNTVXXXXXXXXLK---WHTRLAHVSEKGLHILQK 772
           SLV  KG   +  +YV +  T++   +           K   WH RL H+S  G+  L K
Sbjct: 386 SLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 445

Query: 773 QGFF-FCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GN 949
           +     C +  SK+  CEHC  GKH  + F+   H T   L+Y+++DLWGPS   +  G 
Sbjct: 446 RNLLKGCTS--SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGA 503

Query: 950 KY 955
           +Y
Sbjct: 504 RY 505



 Score = 85.1 bits (209), Expect(3) = 1e-47
 Identities = 38/68 (55%), Positives = 50/68 (73%)
 Frame = +3

Query: 960  LSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSHL 1139
            L++IDD+SRKVW + LK K DTF  FK WK +IE QT +K+K+LRTDNG EF +  F+  
Sbjct: 507  LTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDY 566

Query: 1140 CDESGILR 1163
            C + GI+R
Sbjct: 567  CRQEGIVR 574



 Score = 34.7 bits (78), Expect(3) = 1e-47
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVL 408
           EWILDS C+FH+ ++R+   ++K +   +V+
Sbjct: 289 EWILDSACSFHICTKRNWFSSYKPVQKGDVV 319


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  119 bits (297), Expect(3) = 2e-47
 Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 4/182 (2%)
 Frame = +2

Query: 425 PLKIKGVGSVTLKFENGFICTLDRVRYVPDLNRNLISVGDLDELGMCGKFGDGMLKVIKG 604
           P K  G+GS+ L+  +G    L  VRYVP+L R+LIS+G L+  G+  +  DG+LKV  G
Sbjct: 344 PCKTVGIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSG 403

Query: 605 SLVIFKGFKRNGIYV----TKAETMSQFSNTVXXXXXXXXLKWHTRLAHVSEKGLHILQK 772
           +L++ KG ++N +Y     T   T +  +++           WH RL    EK L  L K
Sbjct: 404 ALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAK 463

Query: 773 QGFFFCKNVISKVPCCEHCTIGKHHILHFSIGSHKTTSVLEYINSDLWGPSSVSTQ*GNK 952
           QG      V  K+  CEHC + K   + F  G H T  +L+Y++SD+WGP+   +  G  
Sbjct: 464 QGLLKGTKV-CKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRY 522

Query: 953 YF 958
           YF
Sbjct: 523 YF 524



 Score = 82.8 bits (203), Expect(3) = 2e-47
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +3

Query: 957  FLSLIDDFSRKVWIFLLKQKSDTFERFKTWKTLIENQT*KKIKVLRTDNGLEFSNSDFSH 1136
            F++ IDDFSR+VW+F +K K +  + F  WK  +ENQT +KIK+LRTDNG E+ +  F  
Sbjct: 524  FVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYKSDPFQK 583

Query: 1137 LCDESGILR 1163
            +C E GI+R
Sbjct: 584  ICQECGIVR 592



 Score = 37.7 bits (86), Expect(3) = 2e-47
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 316 EWILDSGCTFHMTSRRD*LQNFKDIASWEVLIGNN 420
           EWILDS CT+HMT  R+    F+++    V +GN+
Sbjct: 308 EWILDSTCTYHMTPMREWFFEFEELDGGFVYMGND 342