BLASTX nr result
ID: Forsythia21_contig00002874
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00002874
(4330 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2283 0.0
ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II su... 2283 0.0
ref|XP_012830376.1| PREDICTED: DNA-directed RNA polymerase II su... 2280 0.0
ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II su... 2278 0.0
ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II su... 2278 0.0
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su... 2278 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2275 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2274 0.0
emb|CDO99545.1| unnamed protein product [Coffea canephora] 2273 0.0
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 2273 0.0
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 2272 0.0
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 2268 0.0
gb|AES59623.2| DNA-directed RNA polymerase subunit beta [Medicag... 2267 0.0
ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phas... 2267 0.0
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 2266 0.0
ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II su... 2266 0.0
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su... 2265 0.0
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su... 2264 0.0
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 2264 0.0
ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Moru... 2263 0.0
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2283 bits (5917), Expect = 0.0
Identities = 1125/1173 (95%), Positives = 1151/1173 (98%)
Frame = -3
Query: 4172 EEEYYDQSYNDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADI 3993
EEE YD + D+EEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 5 EEEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3992 EIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3813
EIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3812 LYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3633
LYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 184
Query: 3632 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVR 3453
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVR
Sbjct: 185 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 244
Query: 3452 MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMEL 3273
MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMEL
Sbjct: 245 MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMEL 304
Query: 3272 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETK 3093
LRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETK
Sbjct: 305 LRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETK 364
Query: 3092 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2913
KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424
Query: 2912 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2733
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484
Query: 2732 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2553
LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544
Query: 2552 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2373
LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLV+T RVDVNTEVG
Sbjct: 545 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604
Query: 2372 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2193
VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK+KDIQALQQRE+P++GGWH+LVAKGF
Sbjct: 605 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGF 664
Query: 2192 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 2013
IEY+D TMISMTINDLVSARLNP+EAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665 IEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHN 724
Query: 2012 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1833
QSPRNTYQSAMGKQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784
Query: 1832 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1653
AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 785 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 844
Query: 1652 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1473
MGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPIA D+AQG AARYT+RDHSTSLRHS
Sbjct: 845 MGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHS 904
Query: 1472 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1293
ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 905 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTME 964
Query: 1292 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1113
GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 965 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1024
Query: 1112 QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 933
QMRGFETMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084
Query: 932 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 753
DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGC 1144
Query: 752 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
KNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177
>ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sesamum
indicum]
Length = 1193
Score = 2283 bits (5916), Expect = 0.0
Identities = 1127/1177 (95%), Positives = 1153/1177 (97%), Gaps = 4/1177 (0%)
Frame = -3
Query: 4172 EEEYYDQSYN----DDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDE 4005
EEEYYDQ YN D++EEITQEDAW VISAYFE KGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 3 EEEYYDQDYNEEEEDEDEEITQEDAWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 62
Query: 4004 SADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3825
+ADIEIRPESQHNPGHQP+FAETIYKISFGQIYLSKPMMTESDGETATLFP+AARLRNLT
Sbjct: 63 AADIEIRPESQHNPGHQPEFAETIYKISFGQIYLSKPMMTESDGETATLFPRAARLRNLT 122
Query: 3824 YSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3645
YSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 123 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 182
Query: 3644 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPST 3465
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPST
Sbjct: 183 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPST 242
Query: 3464 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ 3285
MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F+DTQ
Sbjct: 243 MFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSDTQ 302
Query: 3284 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEY 3105
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEY
Sbjct: 303 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY 362
Query: 3104 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2925
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 363 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 422
Query: 2924 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2745
+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 423 SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 482
Query: 2744 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2565
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 483 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 542
Query: 2564 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVN 2385
AYPILEFLEEWGTENF+EISPAVIPQATKIFVNGCWVGIHR+PDMLV T RVDVN
Sbjct: 543 AYPILEFLEEWGTENFKEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVN 602
Query: 2384 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELV 2205
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI+ALQQRESP++GGWH+LV
Sbjct: 603 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLV 662
Query: 2204 AKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPF 2025
AKGFIEY+D TMISMTI DLV+ARLNP EAYSDTYTHCEIHPSLILGVCASIIPF
Sbjct: 663 AKGFIEYIDTEEEETTMISMTIGDLVNARLNPTEAYSDTYTHCEIHPSLILGVCASIIPF 722
Query: 2024 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1845
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 723 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 782
Query: 1844 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 1665
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
Sbjct: 783 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 842
Query: 1664 RTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTS 1485
R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+PDDAQGQAARYTKRDHSTS
Sbjct: 843 RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTS 902
Query: 1484 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 1305
LRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
Sbjct: 903 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 962
Query: 1304 WTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 1125
WT+EGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH
Sbjct: 963 WTLEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 1022
Query: 1124 KCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 945
KCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
Sbjct: 1023 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1082
Query: 944 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 765
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFE
Sbjct: 1083 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFE 1142
Query: 764 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1143 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179
>ref|XP_012830376.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Erythranthe
guttatus] gi|604344639|gb|EYU43393.1| hypothetical
protein MIMGU_mgv1a000385mg [Erythranthe guttata]
Length = 1197
Score = 2280 bits (5908), Expect = 0.0
Identities = 1127/1183 (95%), Positives = 1153/1183 (97%), Gaps = 7/1183 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYND------DEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQ 4020
MDM+EE+Y+Q Y D DEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQ
Sbjct: 1 MDMDEEFYEQGYPDEEFEEEDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 60
Query: 4019 EIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 3840
EIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR
Sbjct: 61 EIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 120
Query: 3839 LRNLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 3660
LRNLTYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD
Sbjct: 121 LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 180
Query: 3659 LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQN 3480
LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQN
Sbjct: 181 LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQN 240
Query: 3479 RPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYD 3300
RPPSTMF+RML+RTSAKGGSSGQYIRATLPYIR+EIPIIIVFRALGFVADKDILEHICY+
Sbjct: 241 RPPSTMFIRMLARTSAKGGSSGQYIRATLPYIRSEIPIIIVFRALGFVADKDILEHICYN 300
Query: 3299 FADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHV 3120
F DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR++RIKYAKEILQKEMLPHV
Sbjct: 301 FQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDRRIKYAKEILQKEMLPHV 360
Query: 3119 GVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 2940
GVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL
Sbjct: 361 GVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 420
Query: 2939 TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR 2760
TRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR
Sbjct: 421 TRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR 480
Query: 2759 LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 2580
LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI
Sbjct: 481 LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 540
Query: 2579 TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXX 2400
TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T
Sbjct: 541 TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRR 600
Query: 2399 RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGG 2220
RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPD+GG
Sbjct: 601 RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGG 660
Query: 2219 WHELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCA 2040
WH+LVAKGFIEY+D TMISMTINDLVSAR+NP EAYSDTYTHCEIHPSLILGVCA
Sbjct: 661 WHDLVAKGFIEYIDTEEEETTMISMTINDLVSARINPGEAYSDTYTHCEIHPSLILGVCA 720
Query: 2039 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 1860
SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH
Sbjct: 721 SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 780
Query: 1859 FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 1680
FRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED
Sbjct: 781 FRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 840
Query: 1679 FGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQA-ARYTK 1503
FGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI PD+AQGQA ARYTK
Sbjct: 841 FGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQGQANARYTK 900
Query: 1502 RDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 1323
RDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY
Sbjct: 901 RDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 960
Query: 1322 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDN 1143
TQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDN
Sbjct: 961 TQEDMPWTLEGINPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDN 1020
Query: 1142 ISKALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 963
ISKALHKCGYQMRG+ETMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL
Sbjct: 1021 ISKALHKCGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1080
Query: 962 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANL 783
TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANL
Sbjct: 1081 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEKCGLIAIANL 1140
Query: 782 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
KKNSFECR CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1141 KKNSFECRACKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1183
>ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
[Nicotiana sylvestris]
Length = 1191
Score = 2278 bits (5904), Expect = 0.0
Identities = 1129/1178 (95%), Positives = 1153/1178 (97%), Gaps = 2/1178 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYN--DDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVD 4008
MDMEEEY +Q YN DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVD
Sbjct: 1 MDMEEEY-EQQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 59
Query: 4007 ESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 3828
ESADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNL
Sbjct: 60 ESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNL 119
Query: 3827 TYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 3648
TYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
Sbjct: 120 TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 179
Query: 3647 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPS 3468
GECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPS
Sbjct: 180 GECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPS 239
Query: 3467 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADT 3288
TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DT
Sbjct: 240 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDT 299
Query: 3287 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGE 3108
QMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVG+GE
Sbjct: 300 QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGE 359
Query: 3107 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 2928
YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
Sbjct: 360 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 419
Query: 2927 RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 2748
RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
Sbjct: 420 RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 479
Query: 2747 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 2568
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
Sbjct: 480 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539
Query: 2567 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDV 2388
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T RVDV
Sbjct: 540 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDV 599
Query: 2387 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHEL 2208
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP+EGGWH+L
Sbjct: 600 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDL 659
Query: 2207 VAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIP 2028
VAKG+IEY+D TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIP
Sbjct: 660 VAKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP 719
Query: 2027 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 1848
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
Sbjct: 720 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 779
Query: 1847 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 1668
PAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
Sbjct: 780 PAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 839
Query: 1667 DRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHST 1488
DR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHST
Sbjct: 840 DRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHST 899
Query: 1487 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1308
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1307 PWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL 1128
PWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKAL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1019
Query: 1127 HKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 948
HKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 947 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 768
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK+SF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSF 1139
Query: 767 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1140 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
[Nicotiana tomentosiformis]
Length = 1191
Score = 2278 bits (5903), Expect = 0.0
Identities = 1129/1178 (95%), Positives = 1152/1178 (97%), Gaps = 2/1178 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYN--DDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVD 4008
MD EEEY +Q YN DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVD
Sbjct: 1 MDTEEEY-EQQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 59
Query: 4007 ESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 3828
ESADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNL
Sbjct: 60 ESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNL 119
Query: 3827 TYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 3648
TYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
Sbjct: 120 TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 179
Query: 3647 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPS 3468
GECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPS
Sbjct: 180 GECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPS 239
Query: 3467 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADT 3288
TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DT
Sbjct: 240 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDT 299
Query: 3287 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGE 3108
QMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVG+GE
Sbjct: 300 QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGE 359
Query: 3107 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 2928
YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
Sbjct: 360 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 419
Query: 2927 RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 2748
RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
Sbjct: 420 RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 479
Query: 2747 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 2568
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
Sbjct: 480 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539
Query: 2567 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDV 2388
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T RVDV
Sbjct: 540 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDV 599
Query: 2387 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHEL 2208
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP+EGGWH+L
Sbjct: 600 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDL 659
Query: 2207 VAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIP 2028
VAKG+IEY+D TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIP
Sbjct: 660 VAKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP 719
Query: 2027 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 1848
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
Sbjct: 720 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 779
Query: 1847 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 1668
PAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
Sbjct: 780 PAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 839
Query: 1667 DRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHST 1488
DR +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHST
Sbjct: 840 DRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHST 899
Query: 1487 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1308
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1307 PWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL 1128
PWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKAL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1019
Query: 1127 HKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 948
HKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 947 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 768
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 767 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1140 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
curcas]
Length = 1193
Score = 2278 bits (5902), Expect = 0.0
Identities = 1130/1180 (95%), Positives = 1152/1180 (97%), Gaps = 4/1180 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYNDDE----EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEI 4014
MD E EY DQ ND+E EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDDEHEY-DQPLNDEEDDGEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 59
Query: 4013 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 3834
VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 60 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 119
Query: 3833 NLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 3654
NLTYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
Sbjct: 120 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 179
Query: 3653 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRP 3474
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP
Sbjct: 180 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 239
Query: 3473 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 3294
PS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 240 PSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 299
Query: 3293 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 3114
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGV
Sbjct: 300 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGV 359
Query: 3113 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2934
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+
Sbjct: 360 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTK 419
Query: 2933 DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2754
DVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 420 DVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 479
Query: 2753 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 2574
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 480 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 539
Query: 2573 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRV 2394
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT RV
Sbjct: 540 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV 599
Query: 2393 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWH 2214
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES +EGGWH
Sbjct: 600 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWH 659
Query: 2213 ELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASI 2034
+LVAKGFIEY+D TMISMTI+DLV AR+NP+EAYSDTYTHCEIHPSLILGVCASI
Sbjct: 660 DLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASI 719
Query: 2033 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1854
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 720 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 779
Query: 1853 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 1674
QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 780 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 839
Query: 1673 RPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDH 1494
RPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT+RDH
Sbjct: 840 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDH 899
Query: 1493 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1314
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 900 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 959
Query: 1313 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISK 1134
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 960 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1019
Query: 1133 ALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 954
ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1020 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1079
Query: 953 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 774
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1080 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1139
Query: 773 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1140 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2275 bits (5896), Expect = 0.0
Identities = 1126/1177 (95%), Positives = 1150/1177 (97%), Gaps = 1/1177 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQ-SYNDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDE 4005
MDME+EY Q + +DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4004 SADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3825
SADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3824 YSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3645
YSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3644 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPST 3465
ECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA+TQNRPPST
Sbjct: 181 ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPST 240
Query: 3464 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ 3285
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ 300
Query: 3284 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEY 3105
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEY
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY 360
Query: 3104 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2925
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2924 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2745
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2744 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2565
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2564 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVN 2385
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T RVDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN 600
Query: 2384 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELV 2205
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPDEGGWH+LV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLV 660
Query: 2204 AKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPF 2025
AKG+IEY+D TMISMTINDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF 720
Query: 2024 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1845
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1844 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 1665
AGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
Sbjct: 781 AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1664 RTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTS 1485
R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTS
Sbjct: 841 RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS 900
Query: 1484 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 1305
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
Sbjct: 901 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 960
Query: 1304 WTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 1125
WTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALH
Sbjct: 961 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1020
Query: 1124 KCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 945
KCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
Sbjct: 1021 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1080
Query: 944 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 765
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
Sbjct: 1081 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 1140
Query: 764 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2274 bits (5894), Expect = 0.0
Identities = 1125/1178 (95%), Positives = 1151/1178 (97%), Gaps = 5/1178 (0%)
Frame = -3
Query: 4172 EEEYYDQSYNDD-----EEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVD 4008
+++ YDQ+ N+D E+EITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVD
Sbjct: 3 DDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
Query: 4007 ESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 3828
ESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
Sbjct: 63 ESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
Query: 3827 TYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 3648
TYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
Sbjct: 123 TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
Query: 3647 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPS 3468
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS
Sbjct: 183 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
Query: 3467 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADT 3288
TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DT
Sbjct: 243 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT 302
Query: 3287 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGE 3108
QMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGE
Sbjct: 303 QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGE 362
Query: 3107 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 2928
YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
Sbjct: 363 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
Query: 2927 RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 2748
R+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
Sbjct: 423 RSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 482
Query: 2747 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 2568
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
Sbjct: 483 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
Query: 2567 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDV 2388
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT RVDV
Sbjct: 543 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDV 602
Query: 2387 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHEL 2208
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES +EGGWH+L
Sbjct: 603 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDL 662
Query: 2207 VAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIP 2028
VAKGFIEY+D TMISMTI+DLV AR+NP+EAYSDTYTHCEIHPSLILGVCASIIP
Sbjct: 663 VAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIP 722
Query: 2027 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 1848
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
Sbjct: 723 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
Query: 1847 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 1668
PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
Sbjct: 783 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
Query: 1667 DRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHST 1488
DR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT+RDHS
Sbjct: 843 DRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSI 902
Query: 1487 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1308
SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 903 SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
Query: 1307 PWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL 1128
PWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKAL
Sbjct: 963 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
Query: 1127 HKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 948
HKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
Query: 947 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 768
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
Sbjct: 1083 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1142
Query: 767 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
>emb|CDO99545.1| unnamed protein product [Coffea canephora]
Length = 1193
Score = 2273 bits (5890), Expect = 0.0
Identities = 1125/1179 (95%), Positives = 1148/1179 (97%), Gaps = 3/1179 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYNDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDES 4002
MDME+EY D YND+EEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDES
Sbjct: 1 MDMEDEYEDNQYNDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 60
Query: 4001 ADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 3822
ADIEIRPESQHNPGHQ DFAET+YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY
Sbjct: 61 ADIEIRPESQHNPGHQSDFAETVYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 120
Query: 3821 SAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 3642
SAPLYVDV+KRVI+KGHDGEEVTETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGE
Sbjct: 121 SAPLYVDVTKRVIKKGHDGEEVTETQDFGKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 180
Query: 3641 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTM 3462
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTM
Sbjct: 181 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTM 240
Query: 3461 FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 3282
FVRMLSR+SAKGG+SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQM
Sbjct: 241 FVRMLSRSSAKGGASGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQM 300
Query: 3281 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYC 3102
MELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEYC
Sbjct: 301 MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC 360
Query: 3101 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 2922
ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA
Sbjct: 361 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 420
Query: 2921 YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 2742
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
Sbjct: 421 YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 480
Query: 2741 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 2562
LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
Sbjct: 481 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 540
Query: 2561 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNT 2382
YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLV+T RVDVNT
Sbjct: 541 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNT 600
Query: 2381 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVA 2202
EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQ RESP+EGGWH+LVA
Sbjct: 601 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQARESPEEGGWHDLVA 660
Query: 2201 KGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFP 2022
KGFIEY+D TMISMTINDLV+ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFP
Sbjct: 661 KGFIEYIDTEEEETTMISMTINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFP 720
Query: 2021 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 1842
DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
Sbjct: 721 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 780
Query: 1841 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 1662
GINAIVAI+CYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
Sbjct: 781 GINAIVAISCYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 840
Query: 1661 TNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQ---GQAARYTKRDHS 1491
+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI DDAQ A RYTKRDHS
Sbjct: 841 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIHQDDAQVPSALATRYTKRDHS 900
Query: 1490 TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 1311
TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 901 TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 960
Query: 1310 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKA 1131
MP+T+EGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKA
Sbjct: 961 MPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1020
Query: 1130 LHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 951
LHKCGYQMRGFE MYNGHTGR LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
Sbjct: 1021 LHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1080
Query: 950 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 771
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
Sbjct: 1081 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 1140
Query: 770 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
FECR CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1141 FECRSCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1179
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 2273 bits (5890), Expect = 0.0
Identities = 1123/1186 (94%), Positives = 1153/1186 (97%), Gaps = 10/1186 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYN----------DDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQ 4032
MD+EEEYY+Q YN ++EE+I+QEDAWAVISAYFE KGLVRQQLDSFDEFIQ
Sbjct: 1 MDLEEEYYEQEYNNEAENENDEEEEEEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 60
Query: 4031 NTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFP 3852
NTMQEIVDESADIEIRPESQHNPG QPDFAETIYKISFGQIYLSKPMMTESDGETATLFP
Sbjct: 61 NTMQEIVDESADIEIRPESQHNPGQQPDFAETIYKISFGQIYLSKPMMTESDGETATLFP 120
Query: 3851 KAARLRNLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 3672
KAARLRNLTYSAPLYVDVSKRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN
Sbjct: 121 KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 180
Query: 3671 SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 3492
SEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA
Sbjct: 181 SEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 240
Query: 3491 ETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 3312
E QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH
Sbjct: 241 EAQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 300
Query: 3311 ICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEM 3132
IC++ +DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKEM
Sbjct: 301 ICFNSSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM 360
Query: 3131 LPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 2952
LPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML
Sbjct: 361 LPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 420
Query: 2951 FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 2772
FRKLTRDVR+YVQKCVDNGKDVNLQF IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
Sbjct: 421 FRKLTRDVRSYVQKCVDNGKDVNLQFXIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 480
Query: 2771 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 2592
VLNRLTYASTLSHLRRL+SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL
Sbjct: 481 VLNRLTYASTLSHLRRLBSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 540
Query: 2591 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXX 2412
MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T
Sbjct: 541 MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLR 600
Query: 2411 XXXXRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESP 2232
RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD+QALQQRESP
Sbjct: 601 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESP 660
Query: 2231 DEGGWHELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLIL 2052
D+GGWHELVAKGFIEY+D TMISMTINDL+SA++NP EAYSDTYTHCEIHPSLIL
Sbjct: 661 DDGGWHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLIL 720
Query: 2051 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 1872
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
Sbjct: 721 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 780
Query: 1871 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 1692
EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
Sbjct: 781 EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 840
Query: 1691 VKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAAR 1512
VKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTR SGEDVIIGKTTPI+PDDAQGQAAR
Sbjct: 841 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAAR 900
Query: 1511 YTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 1332
YTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG
Sbjct: 901 YTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 960
Query: 1331 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVT 1152
MTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVT
Sbjct: 961 MTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1020
Query: 1151 VDNISKALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 972
VDNISKALHKCGYQMRGFETMYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPV
Sbjct: 1021 VDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1080
Query: 971 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI 792
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAI
Sbjct: 1081 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAI 1140
Query: 791 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1141 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1186
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 2272 bits (5887), Expect = 0.0
Identities = 1124/1177 (95%), Positives = 1149/1177 (97%), Gaps = 1/1177 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQ-SYNDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDE 4005
MD+E+EY Q + +DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MDLEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4004 SADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3825
SADIEIRPESQHNPGHQ DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3824 YSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3645
YSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3644 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPST 3465
ECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPST
Sbjct: 181 ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPST 240
Query: 3464 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ 3285
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ 300
Query: 3284 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEY 3105
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEY
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY 360
Query: 3104 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2925
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2924 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2745
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2744 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2565
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2564 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVN 2385
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T RVDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN 600
Query: 2384 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELV 2205
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPDEGGWH+LV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLV 660
Query: 2204 AKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPF 2025
AKG+IEY+D TMISMTINDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF 720
Query: 2024 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1845
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1844 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 1665
AGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
Sbjct: 781 AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1664 RTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTS 1485
R TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTS
Sbjct: 841 RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS 900
Query: 1484 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 1305
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
Sbjct: 901 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 960
Query: 1304 WTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 1125
WTVEGI+PDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALH
Sbjct: 961 WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1020
Query: 1124 KCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 945
KCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
Sbjct: 1021 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1080
Query: 944 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 765
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
Sbjct: 1081 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 1140
Query: 764 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 2268 bits (5876), Expect = 0.0
Identities = 1120/1172 (95%), Positives = 1145/1172 (97%)
Frame = -3
Query: 4169 EEYYDQSYNDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIE 3990
EE + Q D+EEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIE
Sbjct: 9 EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 68
Query: 3989 IRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 3810
IRPESQHNPG Q DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 69 IRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
Query: 3809 YVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3630
YVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 129 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
Query: 3629 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRM 3450
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRM
Sbjct: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
Query: 3449 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 3270
LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELL
Sbjct: 249 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
Query: 3269 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKK 3090
RPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG G++CETKK
Sbjct: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
Query: 3089 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 2910
AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK
Sbjct: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
Query: 2909 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 2730
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
Sbjct: 429 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
Query: 2729 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 2550
RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL
Sbjct: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
Query: 2549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVGV 2370
EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKT RVDVNTEVGV
Sbjct: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
Query: 2369 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGFI 2190
VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWH+LVAKGFI
Sbjct: 609 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
Query: 2189 EYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 2010
EY+D TMISMTINDLV ARL+P+EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
Query: 2009 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1830
SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
Query: 1829 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTM 1650
IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTM
Sbjct: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
Query: 1649 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHSE 1470
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT+RDHS SLRHSE
Sbjct: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
Query: 1469 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 1290
TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
Sbjct: 909 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
Query: 1289 ITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1110
ITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
Query: 1109 MRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 930
MRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 929 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 750
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
Query: 749 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
>gb|AES59623.2| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1195
Score = 2267 bits (5875), Expect = 0.0
Identities = 1122/1179 (95%), Positives = 1149/1179 (97%), Gaps = 3/1179 (0%)
Frame = -3
Query: 4181 MDMEEEY-YDQSYN--DDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIV 4011
MD+EEE +DQ DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 MDLEEENEFDQQMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 62
Query: 4010 DESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 3831
DESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 63 DESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 122
Query: 3830 LTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 3651
LTYSAPLYVDVSKRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE
Sbjct: 123 LTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 182
Query: 3650 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPP 3471
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPP
Sbjct: 183 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPP 242
Query: 3470 STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFAD 3291
STMFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFAD
Sbjct: 243 STMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFAD 302
Query: 3290 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG 3111
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAK+ILQKEMLPHVGVG
Sbjct: 303 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVG 362
Query: 3110 EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 2931
EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
Sbjct: 363 EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 422
Query: 2930 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 2751
VR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
Sbjct: 423 VRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 482
Query: 2750 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 2571
ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
Sbjct: 483 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 542
Query: 2570 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVD 2391
SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHRDPDMLV+T RVD
Sbjct: 543 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVD 602
Query: 2390 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHE 2211
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI +LQQRESP++GGWH+
Sbjct: 603 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHD 662
Query: 2210 LVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASII 2031
LV+KGFIEY+D TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASII
Sbjct: 663 LVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASII 722
Query: 2030 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 1851
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 723 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 782
Query: 1850 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 1671
LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
Sbjct: 783 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 842
Query: 1670 PDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHS 1491
PDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++ ++ QGQAARY+KRDHS
Sbjct: 843 PDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHS 902
Query: 1490 TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 1311
SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 903 ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 962
Query: 1310 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKA 1131
MPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKA
Sbjct: 963 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1022
Query: 1130 LHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 951
LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
Sbjct: 1023 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1082
Query: 950 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 771
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
Sbjct: 1083 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 1142
Query: 770 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
FECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1143 FECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1181
>ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
gi|561021391|gb|ESW20162.1| hypothetical protein
PHAVU_006G185800g [Phaseolus vulgaris]
Length = 1194
Score = 2267 bits (5874), Expect = 0.0
Identities = 1122/1180 (95%), Positives = 1151/1180 (97%), Gaps = 4/1180 (0%)
Frame = -3
Query: 4181 MDMEEEY-YDQSY---NDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEI 4014
MD+EEE YDQ DDE++ITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDLEEEQEYDQQMMEEEDDEDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 4013 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 3834
VDESADIEIRPESQHNPGHQ DFAETIY+ISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYRISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 3833 NLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 3654
NLTYSAPLYVDVSKRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
Sbjct: 121 NLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
Query: 3653 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRP 3474
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 3473 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 3294
PSTMFVRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 3293 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 3114
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGV
Sbjct: 301 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360
Query: 3113 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2934
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 2933 DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2754
DVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 2753 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 2574
+ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 FASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 2573 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRV 2394
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG W+GIHRDPDMLV+T RV
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGSWMGIHRDPDMLVRTLRKLRRRV 600
Query: 2393 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWH 2214
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKK+DI ALQQRESP+EGGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEEGGWH 660
Query: 2213 ELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASI 2034
+LV+KGFIEY+D TMISMTINDLV ARLNP++AYSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEDAYSDTYTHCEIHPSLILGVCASI 720
Query: 2033 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1854
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 1853 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 1674
QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 1673 RPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDH 1494
RPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ ++AQGQA RYT+RDH
Sbjct: 841 RPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH 900
Query: 1493 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1314
S SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 901 SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
Query: 1313 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISK 1134
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 961 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
Query: 1133 ALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 954
ALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1021 ALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
Query: 953 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 774
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1081 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1140
Query: 773 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
gi|641824899|gb|KDO44201.1| hypothetical protein
CISIN_1g000996mg [Citrus sinensis]
Length = 1195
Score = 2266 bits (5873), Expect = 0.0
Identities = 1119/1172 (95%), Positives = 1145/1172 (97%)
Frame = -3
Query: 4169 EEYYDQSYNDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIE 3990
EE + Q D+EEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIE
Sbjct: 9 EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 68
Query: 3989 IRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 3810
IRPESQHNPG Q DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 69 IRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
Query: 3809 YVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3630
YVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 129 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
Query: 3629 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRM 3450
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRM
Sbjct: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
Query: 3449 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 3270
LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELL
Sbjct: 249 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
Query: 3269 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKK 3090
RPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG G++CETKK
Sbjct: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
Query: 3089 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 2910
AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK
Sbjct: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
Query: 2909 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 2730
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
Sbjct: 429 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
Query: 2729 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 2550
RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL
Sbjct: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
Query: 2549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVGV 2370
EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKT RVDVNTEVGV
Sbjct: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
Query: 2369 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGFI 2190
VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWH+LVAKGFI
Sbjct: 609 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
Query: 2189 EYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 2010
EY+D TMISMTINDLV ARL+P+EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
Query: 2009 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1830
SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
Query: 1829 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTM 1650
IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTM
Sbjct: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
Query: 1649 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHSE 1470
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT+RDHS SLRHSE
Sbjct: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
Query: 1469 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 1290
TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
Sbjct: 909 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
Query: 1289 ITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1110
ITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
Query: 1109 MRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 930
MRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 929 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 750
GGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
Query: 749 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus
euphratica]
Length = 1198
Score = 2266 bits (5872), Expect = 0.0
Identities = 1124/1184 (94%), Positives = 1150/1184 (97%), Gaps = 8/1184 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYNDD--------EEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNT 4026
M+ +EY Q N+D +EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNT
Sbjct: 1 MEDLDEYDHQPMNEDMEPEDEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 60
Query: 4025 MQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 3846
MQEIVDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKA
Sbjct: 61 MQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 120
Query: 3845 ARLRNLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 3666
ARLRNLTYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE
Sbjct: 121 ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 180
Query: 3665 KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAET 3486
KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+
Sbjct: 181 KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAES 240
Query: 3485 QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 3306
QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC
Sbjct: 241 QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 300
Query: 3305 YDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLP 3126
YDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLP
Sbjct: 301 YDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLP 360
Query: 3125 HVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 2946
HVGVGE+CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR
Sbjct: 361 HVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 420
Query: 2945 KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL 2766
KLTRDVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL
Sbjct: 421 KLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL 480
Query: 2765 NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 2586
NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV
Sbjct: 481 NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 540
Query: 2585 YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXX 2406
YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLVKT
Sbjct: 541 YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRL 600
Query: 2405 XXRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDE 2226
RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLI+KKDI ALQQRE+PDE
Sbjct: 601 RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDE 660
Query: 2225 GGWHELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGV 2046
GGWH+LV+KGFIEY+D TMISMTI+DLV ARLNP+EAYSDTYTHCEIHPSLILGV
Sbjct: 661 GGWHDLVSKGFIEYIDTEEEETTMISMTIHDLVQARLNPEEAYSDTYTHCEIHPSLILGV 720
Query: 2045 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 1866
CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH
Sbjct: 721 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 780
Query: 1865 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 1686
LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK
Sbjct: 781 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 840
Query: 1685 EDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYT 1506
EDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT
Sbjct: 841 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYT 900
Query: 1505 KRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 1326
+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT
Sbjct: 901 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 960
Query: 1325 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVD 1146
YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVD
Sbjct: 961 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1020
Query: 1145 NISKALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 966
NISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI
Sbjct: 1021 NISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1080
Query: 965 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN 786
LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN
Sbjct: 1081 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN 1140
Query: 785 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1184
>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Cicer
arietinum]
Length = 1194
Score = 2265 bits (5869), Expect = 0.0
Identities = 1119/1180 (94%), Positives = 1151/1180 (97%), Gaps = 4/1180 (0%)
Frame = -3
Query: 4181 MDMEEEY-YDQSY---NDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEI 4014
MD++EE YDQ DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDLDEEQEYDQQMMDEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 4013 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 3834
VDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGET+TLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETSTLFPKAARLR 120
Query: 3833 NLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 3654
NLTYSAPLYVDVSKRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLT
Sbjct: 121 NLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLT 180
Query: 3653 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRP 3474
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 3473 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 3294
PSTMFVRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 3293 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 3114
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAK+ILQ+EMLPHVGV
Sbjct: 301 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQREMLPHVGV 360
Query: 3113 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2934
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 2933 DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2754
DVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 2753 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 2574
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 2573 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRV 2394
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHRDPDMLV+T RV
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRV 600
Query: 2393 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWH 2214
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI +LQQRESP+EGGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEEGGWH 660
Query: 2213 ELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASI 2034
+LV+KGFIEY+D TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASI 720
Query: 2033 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1854
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 1853 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 1674
QLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 1673 RPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDH 1494
RPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++ ++AQGQAARY+KRDH
Sbjct: 841 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDH 900
Query: 1493 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1314
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 901 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
Query: 1313 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISK 1134
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 961 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
Query: 1133 ALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 954
ALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1021 ALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
Query: 953 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 774
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKN
Sbjct: 1081 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKN 1140
Query: 773 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
polymerase II subunit RPB2 [Gossypium arboreum]
gi|763801668|gb|KJB68623.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
gi|763801669|gb|KJB68624.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
Length = 1189
Score = 2264 bits (5867), Expect = 0.0
Identities = 1119/1177 (95%), Positives = 1148/1177 (97%), Gaps = 1/1177 (0%)
Frame = -3
Query: 4181 MDMEEEYYDQSYND-DEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDE 4005
M+ + EY Q D D+EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MEDDSEYDPQLMEDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4004 SADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3825
SADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3824 YSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3645
YSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3644 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPST 3465
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPST
Sbjct: 181 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 240
Query: 3464 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ 3285
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 300
Query: 3284 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEY 3105
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGE+
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEF 360
Query: 3104 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2925
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2924 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2745
+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2744 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2565
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2564 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVN 2385
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG+HR+PDMLV T RVDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN 600
Query: 2384 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELV 2205
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRE+P++GGWH+LV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLV 660
Query: 2204 AKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPF 2025
AKGFIEY+D TMISMTINDLV AR+NP+EAYS+TYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPF 720
Query: 2024 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1845
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1844 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 1665
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
Sbjct: 781 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1664 RTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTS 1485
R TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ ++AQGQA+RY+KRDHS S
Sbjct: 841 RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSIS 900
Query: 1484 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 1305
LRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
Sbjct: 901 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 960
Query: 1304 WTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 1125
WTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+ALH
Sbjct: 961 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 1020
Query: 1124 KCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 945
KCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
Sbjct: 1021 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1080
Query: 944 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 765
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
Sbjct: 1081 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 1140
Query: 764 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 2264 bits (5866), Expect = 0.0
Identities = 1120/1180 (94%), Positives = 1149/1180 (97%), Gaps = 4/1180 (0%)
Frame = -3
Query: 4181 MDMEEEY-YDQSY---NDDEEEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEI 4014
MD+EEE YD+ DDEEEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MDLEEEQEYDEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 4013 VDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 3834
VDESADIEIRPESQHNPGHQ DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 3833 NLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 3654
NLTYSAPLYVDVSKRVI+KGHDGEEVTE QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
Sbjct: 121 NLTYSAPLYVDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
Query: 3653 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRP 3474
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP
Sbjct: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
Query: 3473 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFA 3294
PSTMFVRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+
Sbjct: 241 PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300
Query: 3293 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 3114
TQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGV
Sbjct: 301 YTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360
Query: 3113 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2934
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361 GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
Query: 2933 DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2754
DVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421 DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
Query: 2753 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 2574
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Query: 2573 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRV 2394
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW+GIHRDPDMLV+T RV
Sbjct: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRV 600
Query: 2393 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWH 2214
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRESP++GGWH
Sbjct: 601 DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWH 660
Query: 2213 ELVAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASI 2034
+LV+KGFIEY+D TMISMTINDLV AR+NP++AYSDTYTHCEIHPSLILGVCASI
Sbjct: 661 DLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASI 720
Query: 2033 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1854
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
Query: 1853 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 1674
QLPAGINAIV+IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781 QLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
Query: 1673 RPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDH 1494
RPDR NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ ++AQGQA RYT+RDH
Sbjct: 841 RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH 900
Query: 1493 STSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1314
S SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 901 SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
Query: 1313 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISK 1134
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 961 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
Query: 1133 ALHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 954
ALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1021 ALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
Query: 953 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 774
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1081 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1140
Query: 773 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
SFECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180
>ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
gi|587931023|gb|EXC18122.1| DNA-directed RNA polymerase
II subunit [Morus notabilis]
Length = 1193
Score = 2263 bits (5865), Expect = 0.0
Identities = 1120/1179 (94%), Positives = 1149/1179 (97%), Gaps = 5/1179 (0%)
Frame = -3
Query: 4175 MEEEY-YDQSYNDDE---EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVD 4008
ME+++ YDQ YNDD+ EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVD
Sbjct: 1 MEDDHEYDQQYNDDDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 60
Query: 4007 ESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 3828
ESADIEIRPESQHNPGHQ DF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
Sbjct: 61 ESADIEIRPESQHNPGHQSDFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 120
Query: 3827 TYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 3648
TYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
Sbjct: 121 TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 180
Query: 3647 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPS 3468
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS
Sbjct: 181 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 240
Query: 3467 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADT 3288
TMFVRMLSRTS+KGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDF+DT
Sbjct: 241 TMFVRMLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDT 300
Query: 3287 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGE 3108
QMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVG GE
Sbjct: 301 QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGE 360
Query: 3107 YCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 2928
+CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
Sbjct: 361 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 420
Query: 2927 RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 2748
R YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
Sbjct: 421 RGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 480
Query: 2747 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 2568
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
Sbjct: 481 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 540
Query: 2567 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDV 2388
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT RVDV
Sbjct: 541 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDV 600
Query: 2387 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHEL 2208
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI+ALQQRE+P+E GWH+L
Sbjct: 601 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDL 660
Query: 2207 VAKGFIEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIP 2028
V+ GFIEY+D TMISMTINDLV ARLNP+EAYS+TYTHCEIHPSLILGVCASIIP
Sbjct: 661 VSNGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIP 720
Query: 2027 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 1848
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
Sbjct: 721 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 780
Query: 1847 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 1668
PAGINAIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
Sbjct: 781 PAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 840
Query: 1667 DRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAA-RYTKRDHS 1491
DR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA D+AQGQAA RYT+RDHS
Sbjct: 841 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHS 900
Query: 1490 TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 1311
SLRHSE G+VDQVLLTTNADGLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 901 ISLRHSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQED 960
Query: 1310 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKA 1131
MPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKA
Sbjct: 961 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1020
Query: 1130 LHKCGYQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 951
LHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
Sbjct: 1021 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1080
Query: 950 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 771
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
Sbjct: 1081 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 1140
Query: 770 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 654
FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1141 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179