BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00009042
         (684 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_004515251.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    72   5e-12
XP_018849099.1 PREDICTED: serine/arginine-rich splicing factor S...    70   2e-11
JAU17285.1 Cold-inducible RNA-binding protein [Noccaea caerulesc...    70   3e-11
XP_013617250.1 PREDICTED: LOW QUALITY PROTEIN: cold-inducible RN...    68   5e-11
XP_018849097.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    69   6e-11
XP_018849096.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    69   6e-11
WP_038455672.1 RNA-binding protein [Campylobacter iguaniorum]          66   7e-11
AII15103.1 RNA-binding protein [Campylobacter iguaniorum] ALV249...    66   7e-11
JAU97829.1 Cold-inducible RNA-binding protein [Noccaea caerulesc...    69   7e-11
XP_018849095.1 PREDICTED: glycine-rich RNA-binding protein 3, mi...    69   7e-11
OGF98273.1 RNA-binding protein [Candidatus Glassbacteria bacteri...    67   8e-11
XP_009401002.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    68   1e-10
OGD25901.1 RNA-binding protein [Candidatus Aminicenantes bacteri...    66   1e-10
XP_018849098.1 PREDICTED: serine/arginine-rich splicing factor S...    68   1e-10
OGD12036.1 RNA-binding protein [Candidatus Aminicenantes bacteri...    66   2e-10
XP_010278062.1 PREDICTED: RNA-binding protein 1 [Nelumbo nucifera]     68   2e-10
XP_018443995.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    68   2e-10
WP_034963851.1 RNA-binding protein [Campylobacter hyointestinali...    65   2e-10
WP_024305159.1 RNA-binding protein [Campylobacter fetus] KGT3659...    65   2e-10
ANE32882.1 RNA-binding protein [Campylobacter hyointestinalis su...    65   2e-10

>XP_004515251.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cicer
           arietinum]
          Length = 183

 Score = 72.0 bits (175), Expect = 5e-12
 Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 16/112 (14%)
 Frame = -1

Query: 660 FSFSNNQTDMALATRIRSMNNVFHQS-CRLM----------STQIYVGKLSPKTTEEELK 514
           FS +NN T +  +T   S +++ ++S C ++          ST++YV  LS +TTEE L+
Sbjct: 50  FSETNNTTTLFPSTLSSSSSSLRNKSSCSVLACLPSSSSSPSTKLYVSGLSFRTTEESLR 109

Query: 513 EAFERFGTITRSHIF-----TKPRGYGFVKFETEEEALKAIEGMKGKKLGYR 373
            AF+ FG +   ++       +PRG+GF+++ETEEE+ KAIEGM GK L  R
Sbjct: 110 NAFKNFGQLVEVNLVMDKVANRPRGFGFLRYETEEESKKAIEGMHGKFLDGR 161


>XP_018849099.1 PREDICTED: serine/arginine-rich splicing factor SR45 isoform X5
           [Juglans regia]
          Length = 170

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
 Frame = -1

Query: 678 SEGLGFFSFS-NNQTDMALATRIRSMNNVFHQSCRLMSTQIYVGKLSPKTTEEELKEAFE 502
           S G  F S S  N     LA    S ++    +    ST++YV  LS +TTEE L++AFE
Sbjct: 56  SNGRRFPSLSLRNGASFVLACLPSSSSSSSSSAPNTSSTKLYVSGLSFRTTEESLRKAFE 115

Query: 501 RFGTITRSH-----IFTKPRGYGFVKFETEEEALKAIEGMKGKKLGYRGRGP 361
            FG +   +     I  +PRG+ F+++ TEEE+ KAIEGM GK++     GP
Sbjct: 116 NFGQLVEVNLVMDKIANRPRGFAFIRYVTEEESQKAIEGMHGKEIDAICLGP 167


>JAU17285.1 Cold-inducible RNA-binding protein [Noccaea caerulescens]
          Length = 192

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
 Frame = -1

Query: 567 TQIYVGKLSPKTTEEELKEAFERFGTIT-----RSHIFTKPRGYGFVKFETEEEALKAIE 403
           T++YV  LS +TTE+ L+ AFE+FG +T        +  +PRG+ F+K+ETEEE++KAIE
Sbjct: 88  TKLYVSGLSFRTTEDNLRNAFEQFGKLTLVNLVMDKVANRPRGFAFLKYETEEESMKAIE 147

Query: 402 GMKGKKLGYR 373
           GM GK L  R
Sbjct: 148 GMHGKFLDGR 157


>XP_013617250.1 PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding protein,
           partial [Brassica oleracea var. oleracea]
          Length = 134

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
 Frame = -1

Query: 570 STQIYVGKLSPKTTEEELKEAFERFGTIT-----RSHIFTKPRGYGFVKFETEEEALKAI 406
           +T++YV  LS +TTE+ L++AFE+FG +T        +  +PRG+ F+++ETEEE++KAI
Sbjct: 29  NTKLYVIGLSFRTTEDNLRKAFEQFGKLTLVNLVMDKVANRPRGFAFLRYETEEESMKAI 88

Query: 405 EGMKGKKLGYR 373
           EGM GK L  R
Sbjct: 89  EGMHGKFLDGR 99


>XP_018849097.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           isoform X3 [Juglans regia]
          Length = 174

 Score = 68.9 bits (167), Expect = 6e-11
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = -1

Query: 678 SEGLGFFSFS-NNQTDMALATRIRSMNNVFHQSCRLMSTQIYVGKLSPKTTEEELKEAFE 502
           S G  F S S  N     LA    S ++    +    ST++YV  LS +TTEE L++AFE
Sbjct: 43  SNGRRFPSLSLRNGASFVLACLPSSSSSSSSSAPNTSSTKLYVSGLSFRTTEESLRKAFE 102

Query: 501 RFGTITRSH-----IFTKPRGYGFVKFETEEEALKAIEGMKGKKLGYR 373
            FG +   +     I  +PRG+ F+++ TEEE+ KAIEGM GK L  R
Sbjct: 103 NFGQLVEVNLVMDKIANRPRGFAFIRYVTEEESQKAIEGMHGKFLDGR 150


>XP_018849096.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           isoform X2 [Juglans regia]
          Length = 177

 Score = 68.9 bits (167), Expect = 6e-11
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = -1

Query: 678 SEGLGFFSFS-NNQTDMALATRIRSMNNVFHQSCRLMSTQIYVGKLSPKTTEEELKEAFE 502
           S G  F S S  N     LA    S ++    +    ST++YV  LS +TTEE L++AFE
Sbjct: 46  SNGRRFPSLSLRNGASFVLACLPSSSSSSSSSAPNTSSTKLYVSGLSFRTTEESLRKAFE 105

Query: 501 RFGTITRSH-----IFTKPRGYGFVKFETEEEALKAIEGMKGKKLGYR 373
            FG +   +     I  +PRG+ F+++ TEEE+ KAIEGM GK L  R
Sbjct: 106 NFGQLVEVNLVMDKIANRPRGFAFIRYVTEEESQKAIEGMHGKFLDGR 153


>WP_038455672.1 RNA-binding protein [Campylobacter iguaniorum]
          Length = 81

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIF-----TKPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS + TE EL+EAF  FG +TR+ I       + +G+GF++  ++ EA KAI+GM
Sbjct: 3   IYVGNLSYRMTEAELREAFSEFGEVTRAKIVKDKETNRSKGFGFIEMSSDAEAKKAIDGM 62

Query: 396 KGKKLGYRGRGPEVN 352
            GK++G  GR   VN
Sbjct: 63  NGKEVG--GRALRVN 75


>AII15103.1 RNA-binding protein [Campylobacter iguaniorum] ALV24970.1
           RNA-binding protein [Campylobacter iguaniorum]
          Length = 82

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIF-----TKPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS + TE EL+EAF  FG +TR+ I       + +G+GF++  ++ EA KAI+GM
Sbjct: 4   IYVGNLSYRMTEAELREAFSEFGEVTRAKIVKDKETNRSKGFGFIEMSSDAEAKKAIDGM 63

Query: 396 KGKKLGYRGRGPEVN 352
            GK++G  GR   VN
Sbjct: 64  NGKEVG--GRALRVN 76


>JAU97829.1 Cold-inducible RNA-binding protein [Noccaea caerulescens]
          Length = 187

 Score = 68.9 bits (167), Expect = 7e-11
 Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
 Frame = -1

Query: 567 TQIYVGKLSPKTTEEELKEAFERFGTIT-----RSHIFTKPRGYGFVKFETEEEALKAIE 403
           T++YV  LS +TTE+ L+ AF++FG +T        +  +PRG+ F+K+ETEEE++KAIE
Sbjct: 83  TKLYVSGLSFRTTEDNLRNAFQQFGKLTLVNLVMDKVANRPRGFAFLKYETEEESMKAIE 142

Query: 402 GMKGKKLGYR 373
           GM GK L  R
Sbjct: 143 GMHGKFLDGR 152


>XP_018849095.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial
           isoform X1 [Juglans regia]
          Length = 187

 Score = 68.9 bits (167), Expect = 7e-11
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = -1

Query: 678 SEGLGFFSFS-NNQTDMALATRIRSMNNVFHQSCRLMSTQIYVGKLSPKTTEEELKEAFE 502
           S G  F S S  N     LA    S ++    +    ST++YV  LS +TTEE L++AFE
Sbjct: 56  SNGRRFPSLSLRNGASFVLACLPSSSSSSSSSAPNTSSTKLYVSGLSFRTTEESLRKAFE 115

Query: 501 RFGTITRSH-----IFTKPRGYGFVKFETEEEALKAIEGMKGKKLGYR 373
            FG +   +     I  +PRG+ F+++ TEEE+ KAIEGM GK L  R
Sbjct: 116 NFGQLVEVNLVMDKIANRPRGFAFIRYVTEEESQKAIEGMHGKFLDGR 163


>OGF98273.1 RNA-binding protein [Candidatus Glassbacteria bacterium GWA2_58_10]
          Length = 115

 Score = 67.0 bits (162), Expect = 8e-11
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIFT-----KPRGYGFVKFETEEEALKAIEGM 397
           IY G LS +TTEEEL+EAFE FG +T ++I       + RG+GFV+  T+ EA  AI GM
Sbjct: 3   IYAGNLSSQTTEEELREAFEAFGQVTAANIIKDRYSGESRGFGFVEMPTKAEAEAAITGM 62

Query: 396 KGKKLG 379
            GK+LG
Sbjct: 63  NGKELG 68


>XP_009401002.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 170

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
 Frame = -1

Query: 663 FFSFSNNQTDMALATRIRSMNNVFHQSCRLM---STQIYVGKLSPKTTEEELKEAFERFG 493
           F S  ++++    A   R  +  F  SC L    ST++YV  LS +TTEE L+ AF+ FG
Sbjct: 40  FPSIRSSRSPWPSAATSRRRSGGFSVSCCLPPTPSTKLYVSGLSFRTTEESLRNAFQNFG 99

Query: 492 TITR-----SHIFTKPRGYGFVKFETEEEALKAIEGMKGKKLGYR 373
            +         I  +PRG+ F+++ TEEE+ KAIEGM GK L  R
Sbjct: 100 QLVEVNLVMDRIANRPRGFAFLRYATEEESKKAIEGMHGKFLDGR 144


>OGD25901.1 RNA-binding protein [Candidatus Aminicenantes bacterium
           RBG_19FT_COMBO_65_30]
          Length = 99

 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIFT-----KPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS   TE++L+ AF+ FG + ++ I T     +PRG+GFV+    +EA+KAIEG+
Sbjct: 3   IYVGNLSFTVTEDDLRGAFQAFGAVEKAAIITDKMSGQPRGFGFVEMPNRDEAVKAIEGL 62

Query: 396 KGKKLGYRGRGPEVN 352
            GK L  +GR  +VN
Sbjct: 63  NGKDL--KGRNMKVN 75


>XP_018849098.1 PREDICTED: serine/arginine-rich splicing factor SR45 isoform X4
           [Juglans regia]
          Length = 174

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
 Frame = -1

Query: 678 SEGLGFFSFS-NNQTDMALATRIRSMNNVFHQSCRLMSTQIYVGKLSPKTTEEELKEAFE 502
           S G  F S S  N     LA    S ++    +    ST++YV  LS +TTEE L++AFE
Sbjct: 56  SNGRRFPSLSLRNGASFVLACLPSSSSSSSSSAPNTSSTKLYVSGLSFRTTEESLRKAFE 115

Query: 501 RFGTITRSH-----IFTKPRGYGFVKFETEEEALKAIEGMKGK 388
            FG +   +     I  +PRG+ F+++ TEEE+ KAIEGM GK
Sbjct: 116 NFGQLVEVNLVMDKIANRPRGFAFIRYVTEEESQKAIEGMHGK 158


>OGD12036.1 RNA-binding protein [Candidatus Aminicenantes bacterium
           RBG_13_62_12]
          Length = 102

 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIFT-----KPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS   TE++L++AF+ FG + ++ I T     +PRG+GFV+   ++EA+KAI G+
Sbjct: 3   IYVGNLSFTVTEDDLRQAFQAFGAVEKAAIITDKMSGQPRGFGFVEMPNKDEAVKAISGL 62

Query: 396 KGKKLGYRGRGPEVN 352
            GK L  +GR  +VN
Sbjct: 63  NGKDL--KGRNLKVN 75


>XP_010278062.1 PREDICTED: RNA-binding protein 1 [Nelumbo nucifera]
          Length = 181

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
 Frame = -1

Query: 624 ATRIRSMNNVFHQSC--------RLMSTQIYVGKLSPKTTEEELKEAFERFGTITRSHIF 469
           ATR+R  N +    C          +ST++YV  LS +TTEE L+ AF+ FG +   ++ 
Sbjct: 55  ATRLRHQNGIRIVGCLPSSPENTTTVSTKLYVSGLSFRTTEESLRNAFKNFGQLIEVNLV 114

Query: 468 -----TKPRGYGFVKFETEEEALKAIEGMKGKKLGYR 373
                 +PRG+ F+++ TEEE+ KAIEGM GK L  R
Sbjct: 115 MDRRANRPRGFAFLRYATEEESKKAIEGMHGKFLDGR 151


>XP_018443995.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Raphanus sativus]
          Length = 183

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
 Frame = -1

Query: 567 TQIYVGKLSPKTTEEELKEAFERFGTIT-----RSHIFTKPRGYGFVKFETEEEALKAIE 403
           T++YV  LS +TTE+ L+ AFE+FG +T        +  +PRG+ F+++ETEEE++KAI+
Sbjct: 79  TKLYVSGLSFRTTEDNLRNAFEQFGKLTLVNLVMDKVANRPRGFAFLRYETEEESMKAIQ 138

Query: 402 GMKGKKLGYR 373
           GM GK L  R
Sbjct: 139 GMHGKFLDGR 148


>WP_034963851.1 RNA-binding protein [Campylobacter hyointestinalis] KEA43717.1
           RNA-binding protein [Campylobacter hyointestinalis
           subsp. hyointestinalis]
          Length = 81

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIF-----TKPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS + +E EL+EAF  FG +TR+ I       + +G+GFV+  T+ EA KAIE M
Sbjct: 3   IYVGNLSYRMSEAELREAFSEFGEVTRAKIVKDKETNRSKGFGFVEMSTDAEAKKAIEAM 62

Query: 396 KGKKLGYRGRGPEVN 352
            GK +G  GR   VN
Sbjct: 63  NGKDIG--GRALRVN 75


>WP_024305159.1 RNA-binding protein [Campylobacter fetus] KGT36597.1 RNA-binding
           protein [Campylobacter fetus] OCS15797.1 RNA-binding
           protein [Campylobacter fetus subsp. venerealis]
           OCS17873.1 RNA-binding protein [Campylobacter fetus
           subsp. fetus] OCS19587.1 RNA-binding protein
           [Campylobacter fetus subsp. fetus BT 10/98] OCS20560.1
           RNA-binding protein [Campylobacter fetus subsp.
           venerealis cfvi03/596] OCS22872.1 RNA-binding protein
           [Campylobacter fetus subsp. venerealis cfvi97/532]
           OCS23955.1 RNA-binding protein [Campylobacter fetus
           subsp. venerealis cfvi9825] OCS26030.1 RNA-binding
           protein [Campylobacter fetus subsp. venerealis cfvB10]
           OCS26665.1 RNA-binding protein [Campylobacter fetus
           subsp. venerealis CCUG 33872] OCS29360.1 RNA-binding
           protein [Campylobacter fetus subsp. venerealis LMG 6570
           = CCUG 33900] OCS31324.1 RNA-binding protein
           [Campylobacter fetus subsp. venerealis LMG 6570 = CCUG
           33900] OCS33611.1 RNA-binding protein [Campylobacter
           fetus subsp. venerealis] OCS33879.1 RNA-binding protein
           [Campylobacter fetus subsp. venerealis] OCS34266.1
           RNA-binding protein [Campylobacter fetus subsp.
           venerealis] OCS38572.1 RNA-binding protein
           [Campylobacter fetus subsp. venerealis] OCS40831.1
           RNA-binding protein [Campylobacter fetus subsp.
           venerealis cfvi92/203] OCS42330.1 RNA-binding protein
           [Campylobacter fetus subsp. venerealis cfvi02/298]
           OFI46572.1 RNA-binding protein [Campylobacter fetus
           subsp. fetus]
          Length = 81

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIF-----TKPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS + TE EL+E F  FG +TR+ I       + +G+GFV+  ++E+A KAIEG 
Sbjct: 3   IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 62

Query: 396 KGKKLGYRGRGPEVN 352
            GK++G  GR   VN
Sbjct: 63  NGKEVG--GRALRVN 75


>ANE32882.1 RNA-binding protein [Campylobacter hyointestinalis subsp.
           hyointestinalis LMG 9260] SFT69456.1 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain) [Campylobacter
           hyointestinalis]
          Length = 82

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
 Frame = -1

Query: 561 IYVGKLSPKTTEEELKEAFERFGTITRSHIF-----TKPRGYGFVKFETEEEALKAIEGM 397
           IYVG LS + +E EL+EAF  FG +TR+ I       + +G+GFV+  T+ EA KAIE M
Sbjct: 4   IYVGNLSYRMSEAELREAFSEFGEVTRAKIVKDKETNRSKGFGFVEMSTDAEAKKAIEAM 63

Query: 396 KGKKLGYRGRGPEVN 352
            GK +G  GR   VN
Sbjct: 64  NGKDIG--GRALRVN 76