BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00027621
         (500 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...    66   4e-09
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...    61   1e-07
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...    61   1e-07
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...    59   7e-07
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]            57   3e-06
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...    56   4e-06
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...    56   6e-06
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    56   6e-06

>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudouridine synthase 4, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 4; AltName:
           Full=RNA-uridine isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = -2

Query: 325 SIKNINNNTIFTAWFCNSRTKERDTTEDEDFPF-FIKLPPYEEKADMPTLGKNLMEDNFP 149
           +I    N T   +   +  T+   TT+ +D    ++ LPP+    D   +GK+L+ D   
Sbjct: 21  TISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDS 80

Query: 148 IERSKRKHKPPKVTALRWVAKCCPEVPFVLLQKMFRLRQVKVELRKSLD 2
           ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+ E+  S+D
Sbjct: 81  VKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVD 126


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
           gi|557107647|gb|ESQ47954.1| hypothetical protein
           EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 31/85 (36%), Positives = 47/85 (55%)
 Frame = -2

Query: 256 DTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCP 77
           D  +D+    ++ LPP+    D   +GK L  D   ++ S         TALRW+ +C P
Sbjct: 48  DDDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKASS----DGSTTALRWILRCRP 103

Query: 76  EVPFVLLQKMFRLRQVKVELRKSLD 2
           ++P  L+QK+FRLRQV+ E+  S D
Sbjct: 104 DLPRTLVQKLFRLRQVRREMSLSCD 128


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/75 (38%), Positives = 47/75 (62%)
 Frame = -2

Query: 226 FIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFVLLQKM 47
           ++ LPP+    D   +GK+L+ D   ++ S    K    TALRW+ +C P++P  L+QK+
Sbjct: 55  WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSK---TTALRWILRCRPDLPRTLVQKL 111

Query: 46  FRLRQVKVELRKSLD 2
           FRLRQV+ ++  S+D
Sbjct: 112 FRLRQVRRQMSLSVD 126


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
 Frame = -2

Query: 325 SIKNINNNTIFTAWFCNSRT--KERDTTEDE-------DFPFFIKLPPYEEKADMPTLGK 173
           S+  I+N  IF + +  + T  + + +T+D+       +   F  LPPY        LGK
Sbjct: 86  SLLCISNRCIFQSHYFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGK 145

Query: 172 NLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFVLLQKMFRLRQVKVEL 17
            L         +       + TAL+WV +CCPE+P  L+QK+FRLRQVK EL
Sbjct: 146 AL-------SATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQVKREL 190


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 35/116 (30%), Positives = 58/116 (50%)
 Frame = -2

Query: 367 RSLHVITTNRGYPYSIKNINNNTIFTAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADM 188
           R L +++  R   + +  ++ +T        S + E++ T+      +  LPP+    D 
Sbjct: 8   RRLLLLSPPRTADHCVAKLSPSTFHYHLSHYSASSEKNGTK------WFTLPPHTATVDG 61

Query: 187 PTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFVLLQKMFRLRQVKVE 20
             LGK +        +  +  K    TAL+WV +CCPE+P  L+QK+FRLRQV+ E
Sbjct: 62  AVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQKLFRLRQVRRE 117


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 30/92 (32%), Positives = 49/92 (53%)
 Frame = -2

Query: 301 TIFTAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHK 122
           T+  A  CN    E+          ++ LPP+    +   LG+ L      ++   +++ 
Sbjct: 41  TVTAAQVCNRNENEKAK--------WLTLPPFTATVNGAALGRELAG----VKMDVKENS 88

Query: 121 PPKVTALRWVAKCCPEVPFVLLQKMFRLRQVK 26
              +TAL+WV +CCPE+P  L+QK+FRLRQV+
Sbjct: 89  TNTMTALKWVQRCCPELPKSLVQKLFRLRQVR 120


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
           gi|482566291|gb|EOA30480.1| hypothetical protein
           CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/75 (38%), Positives = 42/75 (56%)
 Frame = -2

Query: 226 FIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFVLLQKM 47
           ++ LPP+    D   +GK L  +   I  S         TALRW+ +C P++P  L+QK+
Sbjct: 55  WLTLPPFSPTVDGTAVGKELASEGDSITGSTDSST---TTALRWILRCRPDLPRTLVQKL 111

Query: 46  FRLRQVKVELRKSLD 2
           FRLRQV+ E+  S D
Sbjct: 112 FRLRQVRREMSVSCD 126


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
 Frame = -2

Query: 415 MAQRWFSSLLF--SRTATRSLHVITTNRGYPYSIKNINNNTIFTAWFCNSRTKERDTTED 242
           MA+ W    +F  SR    +   + T     Y ++     T+  A  CN    E+     
Sbjct: 1   MARPWLFRRVFHRSRQLFAASDDVQTLYSAFYRLQCHYATTVTDAQVCNRNENEKAK--- 57

Query: 241 EDFPFFIKLPPYEEKADMPTLGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFV 62
                ++ LPP+    +   LG+ L      ++    ++    +TAL+WV +CCPE+P  
Sbjct: 58  -----WLTLPPFTAAVNGAALGRELAG----VKMDVNENSTNTMTALKWVQRCCPELPKS 108

Query: 61  LLQKMFRLRQVK 26
           L+QK+FRLRQV+
Sbjct: 109 LVQKLFRLRQVR 120