BLASTX nr result
ID: Ephedra27_contig00021284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00021284
(3703 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 988 0.0
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 952 0.0
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 936 0.0
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 931 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 931 0.0
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 931 0.0
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 928 0.0
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 925 0.0
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 924 0.0
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 923 0.0
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 922 0.0
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 920 0.0
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 919 0.0
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 917 0.0
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 917 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 916 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 916 0.0
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 914 0.0
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 914 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 912 0.0
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 988 bits (2554), Expect = 0.0
Identities = 535/1113 (48%), Positives = 731/1113 (65%), Gaps = 11/1113 (0%)
Frame = -2
Query: 3516 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 3337
STV + +P + +A EL++FL+S +G S+F+C I TER NWKS G VQF+ A K
Sbjct: 4 STVKVSTIPLSALAEELLQFLESHIGPRSIFACTIVTERRNWKSKGFGRVQFETCNDAKK 63
Query: 3336 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCY---SVSGGVLSVGNMVSESALSVLWSAR 3166
+ S +G L+ +G HL + L +D + RPC V+GG L VG +V E ++SV+ S
Sbjct: 64 ANDLSLEGKLVFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSWN 123
Query: 3165 DCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 2986
AE + +++ FYV E +K+E R +DI T T+ ILL+++ RI+
Sbjct: 124 LVKAELMPERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRIY 183
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
K+ S S ++ + CKE+ + W+RTTDFS S +GQ++ FC
Sbjct: 184 CKVP---SSSKCGRDRYHICKEEYEFDWVRTTDFSASRTIGQSTYFCWMLHESTDIAIIK 240
Query: 2805 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
++ P + +Q L ++ V LVP + L Y+I F+LN+LVH G +S PT
Sbjct: 241 KSFPHHKEIQT-LYLDKGVSFCSSSDLVPIINTLPDCKLAYEILFQLNALVHAGKISGPT 299
Query: 2625 LTCEFFNVLT-NPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLI 2449
+ + ++L N N + L AL++L KS TC P + +Q + ++ N K+L S
Sbjct: 300 IGQDLLDILAGNENVAKL----ALAKLHKSEATCYDPLQIIQRHINDITR-NKKKLQSPS 354
Query: 2448 VSPSKD--LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLH 2275
S +D LM +R LVTPSKVYF+GPEL SN + +HF+ +A DF+RVSFVDED +L
Sbjct: 355 SSKLEDHNLMNCHRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDWSKLP 414
Query: 2274 ANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMF 2095
++AL+ KL E +P+RTN+Y+RI+++L +GI + +KRFEFLAFS+SQLR N+VWMF
Sbjct: 415 SDALSPKL--ESGFFAKPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVWMF 472
Query: 2094 SSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTK 1915
+S++ ++ E IR+WMG F+++R +AK AARMGQ FSSS T V HEV I DIEVTT
Sbjct: 473 ASNENISVESIREWMGEFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVTTD 532
Query: 1914 GVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPS 1735
G++YCFSDGIGKIS AR++A+RCGL PSAFQIRY GYKGV+A+DPTS+HKL+LRPS
Sbjct: 533 GIEYCFSDGIGKISLAFARQVARRCGLKQPPSAFQIRYGGYKGVIAIDPTSFHKLALRPS 592
Query: 1734 MLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENE 1555
M KFNS+N L V WS+ +PCYLNREII LLSTL + D F+++Q+ ++ + ML
Sbjct: 593 MQKFNSNNTMLCVTKWSQSMPCYLNREIITLLSTLEIADHKFEAMQKQQMTLLDDMLTKR 652
Query: 1554 ENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPR 1378
+ A+++L M D K +L +ML GC PS+EP+L+ MLQA RD LS+++SKCR+FV +
Sbjct: 653 DVALNVLEDMIVGDYKEVLTKMLLHGCDPSTEPYLSMMLQALRDHQLSDIRSKCRLFVSK 712
Query: 1377 GNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVAKNPCL 1204
G VL+GCLDE+ TL GEVF++V+ TK + DG E ++ T V+ G VVV KNPCL
Sbjct: 713 GRVLLGCLDESGTLSQGEVFLRVTMTKAELENDGQPFFERIDETTSVVVGAVVVTKNPCL 772
Query: 1203 HPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPP 1030
HPGD+R L+AV+ LV MVDC VFPQ G RPHPNECSG DLDGDL+FV WD L+P
Sbjct: 773 HPGDVRVLQAVSGLELVDQGMVDCLVFPQNGERPHPNECSGGDLDGDLFFVCWDKDLIPT 832
Query: 1029 KKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARS 850
+P MDY GR +DH VT+EEIQE+FV+YM+ND+LG I+NAH+V ADRE KARS
Sbjct: 833 TNDP--AMDYLGRRPRIMDHEVTMEEIQEFFVDYMINDNLGAISNAHLVLADREKSKARS 890
Query: 849 EKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSY 670
KC+ELA+LH+ AVDFAKTGAPAEMP L+ +EYPDFME+ K Y S ILGKLYR +
Sbjct: 891 PKCIELAKLHSMAVDFAKTGAPAEMPRSLMLKEYPDFMERGEKSTYASPGILGKLYRLAK 950
Query: 669 DRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNE 490
+ L+ S+ V YD + +GF++ ++ A HK Y KL LM YYG ++E
Sbjct: 951 EASNSQSFELVSSKNVALPFYDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAESE 1010
Query: 489 AEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASA 310
+EI+SGNI S + +K+ + KD+IL+AV+ L+ EA+GWF SC+ ++S LASA
Sbjct: 1011 SEILSGNISKKSGYLQRDNRKYGEVKDRILIAVKNLQREAQGWFKSSCE-PNQSSKLASA 1069
Query: 309 WYHVTYHSSYWSKGNLISFPWIRYDLLLKTKRY 211
WYHVTY ++SK N SFPWI D+LL K +
Sbjct: 1070 WYHVTYRPDHFSKVNFFSFPWILADVLLNIKAF 1102
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 952 bits (2461), Expect = 0.0
Identities = 515/1116 (46%), Positives = 719/1116 (64%), Gaps = 14/1116 (1%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
+V + N+P+T+ A E++++L + LG+ SVF+ +I T R NW S G VQF + + +
Sbjct: 9 SVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEA 68
Query: 3333 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVLWSARD 3163
+ S K L+++ +L + D I RP + GVL VG M E+ L VL
Sbjct: 69 LSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEG 128
Query: 3162 CNAEFSFQGQKISFYVGHGRE-DYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 2986
F + ++I F++ G+E YK+ + +DI Y + ++LKL+ G RI+
Sbjct: 129 VRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIY 188
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
QK+S S + N + +CKED D W+RTTD S ++GQ++ FC + G +
Sbjct: 189 QKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTF 248
Query: 2805 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
N P+++ + L +E+ VP +R L Y++ F+LNSLVH +S
Sbjct: 249 RNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAA 307
Query: 2625 LTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNS 2455
+ + +L N L +N A L +L K TC P +++ L E ++ PK L
Sbjct: 308 VDSDLIKILRN-----LTVNTAIIILQKLHKLKMTCYDPLSFVKQSLRESLSSPPKSLTE 362
Query: 2454 LIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLH 2275
++M +R L+TPSK++ +GPE SN V +HF+ +ASDFIRV+FV+ED +L
Sbjct: 363 ------NNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLP 416
Query: 2274 ANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMF 2095
ANA++ + ++ I +P+RT +Y RI++IL +G I KRFEFLAFS+SQLR NSVWMF
Sbjct: 417 ANAISTSI--QRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMF 474
Query: 2094 SSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTK 1915
+S+ + AE IRKWMG F+ IR+V+K AARMGQ FSSS T +V +V I DIEVTT
Sbjct: 475 ASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTD 534
Query: 1914 GVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPS 1735
G+ YCFSDGIGKIS A+++A +CGL TPSAFQIRY GYKGVVAVD S+ KLSLR S
Sbjct: 535 GIDYCFSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSS 594
Query: 1734 MLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENE 1555
MLKF+S+NR L+V WS+ +PCYLNREII LLSTLGV DE FQ+LQ+ ++ + +ML N+
Sbjct: 595 MLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNK 654
Query: 1554 ENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPR 1378
E+A+D+L ++ DSK IL++ML G P+ EP+L+ MLQA+ + L EL+S+CRIFVP+
Sbjct: 655 ESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPK 714
Query: 1377 GNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVAKNPCL 1204
G +LIGCLDE+ LDYG+V+++++ TK + S +++ T I G+V V KNPCL
Sbjct: 715 GRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCL 774
Query: 1203 HPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPP 1030
HPGDIR L+AV L +VDC +FPQ G RPHPNECSG DLDGD +F+SWD L+P
Sbjct: 775 HPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLP- 833
Query: 1029 KKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARS 850
E PMDY G +DHNVT+EEIQ +FV+YM+ND+LG I+ AH+VHAD EP KARS
Sbjct: 834 -CHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARS 892
Query: 849 EKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSY 670
EKCL+LA LH+ AVDFAKTGAPAEMPL L PRE+PDFME+ K MY S +LGKLYRD +
Sbjct: 893 EKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIH 952
Query: 669 DRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNE 490
D ++ M S+++ + YD+ E +GF+D L A ++K Y K++ LM YYG + E
Sbjct: 953 DSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTE 1012
Query: 489 AEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCK-LHHKSFALAS 313
EI++GN+R + +K+ D KD+IL++++ L+ EA+ WF+ SC H+ +AS
Sbjct: 1013 DEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQ--CMAS 1070
Query: 312 AWYHVTYHSSYW-SKGNLISFPWIRYDLLLKTKRYN 208
AWYHVTYH +Y+ + N +SFPWI D+LL K N
Sbjct: 1071 AWYHVTYHPTYFHERMNCLSFPWIVGDILLNIKSLN 1106
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 936 bits (2419), Expect = 0.0
Identities = 493/1116 (44%), Positives = 712/1116 (63%), Gaps = 11/1116 (0%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + N+P+T +A +L FL+S LG SVF+ +I TER NWKS G VQF + LA K+
Sbjct: 9 TVRVTNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTS--LAAKL 66
Query: 3333 CNR--STKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVLWSA 3169
+ S + +L + D + P + GVL G M+ + ++VL S
Sbjct: 67 VAQALSLSNNFVFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQSW 126
Query: 3168 RDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARI 2989
A + ++ F+V + YK+E+ +D+ T Y +D LL+L+ G +I
Sbjct: 127 EGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPKI 186
Query: 2988 FQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAF 2809
++++S F A + + CKED + W+RTTDF ES ++G ++ C D
Sbjct: 187 YKRISRPSKFVA---DRYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSSDT 243
Query: 2808 VENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAP 2629
+ P++ +L++E+ VP ++ P G L Y+I F+LNSLVH +S
Sbjct: 244 FRSFPYYREGMKDLILEDSDEFCSVSETVPLIKCPAGSNLSYEILFQLNSLVHMQKISFA 303
Query: 2628 TLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLI 2449
+ + + N N + +L K +TC P ++ + L+ +++
Sbjct: 304 SADADLIEYFGSLNIDTA--NAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKNPSSAIK 361
Query: 2448 VSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHAN 2269
LM +R L+TPSK+Y +GPEL SN V ++F+ +ASDF+RV+FV+ED G+LH +
Sbjct: 362 RLTENSLMSCHRALITPSKIYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPH 421
Query: 2268 ALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSS 2089
++ + EQ I +P+RT +Y+RI++IL NGI I KR+EFLAFS+SQLR ++VWMF+S
Sbjct: 422 VVSTSI--EQGIFAKPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFAS 479
Query: 2088 SKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGV 1909
+ + AE IR+WMG F IR+V+K AARMGQ FSSS T IV ++ I D+EVTT G+
Sbjct: 480 NDNVKAEDIREWMGCFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGI 539
Query: 1908 KYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSML 1729
YCFSDGIGKISS AR++A++CGL TPSAFQIRY GYKGV+AV+ +S+ KLSLR SML
Sbjct: 540 DYCFSDGIGKISSSFARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSML 599
Query: 1728 KFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEEN 1549
KF S NR L+V WS +PCYLNREI+ LLS+LGV DESF +L R+++ +M N E
Sbjct: 600 KFESSNRMLNVTKWSGSMPCYLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREA 659
Query: 1548 AIDILHLMSDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGN 1372
A+++L ++ D S IL++ML G P++EP+L+ M+Q++ + LS+LK++CRIFVP+G
Sbjct: 660 ALNVLENLNGSDSSNILVKMLLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGK 719
Query: 1371 VLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEEL--ETHVIEGDVVVAKNPCLHP 1198
VLIGCLDET L+YG+V+++++ K + S ++ ET ++ G VVV KNPCLHP
Sbjct: 720 VLIGCLDETGILEYGQVYVRLTMKKAELEAGNQSFFRKVDDETSIVVGKVVVTKNPCLHP 779
Query: 1197 GDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKK 1024
GD+R L+AV L +VDC VFPQKG RPHPNECSG DLDGDL+F+SWD L+PP+
Sbjct: 780 GDVRVLEAVYDAKLEEEGLVDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPR- 838
Query: 1023 EPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEK 844
PMDY GR +DH+VT+EEIQ++FV+YM+ND+LG I+ AH++HADREP KA SE
Sbjct: 839 -TTAPMDYIGRRPRIMDHDVTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSEN 897
Query: 843 CLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDR 664
CL+LA LH+ AVDFAKTGAPAEMP L PR+YPDFME+ +PMY S LGKLYR + +
Sbjct: 898 CLQLATLHSMAVDFAKTGAPAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVES 957
Query: 663 MEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAE 484
+ L+ S + + YD+ E GF++ + AE H+ Y K+ +M YY +++E E
Sbjct: 958 ESQGSSNLVWSEKTAEAAYDRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDE 1017
Query: 483 IISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWY 304
+++GN+R + + +++ + KD+IL+AV++L+ EA+GWF+ SC+ + +ASAWY
Sbjct: 1018 VLTGNLRKRAAYLQRDNRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQ-KMASAWY 1076
Query: 303 HVTYHSSYWSKG-NLISFPWIRYDLLLKTKRYNDTK 199
HVTYH +Y+ K N +SFPWI+ D+LL K N +
Sbjct: 1077 HVTYHPNYYQKSINCLSFPWIKGDILLNIKSINSQR 1112
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 931 bits (2407), Expect = 0.0
Identities = 509/1127 (45%), Positives = 723/1127 (64%), Gaps = 15/1127 (1%)
Frame = -2
Query: 3525 RMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGL 3346
R T+ + N+P+T +A +L+EFL+ LG +VF+ +I T+R NWKS G VQF
Sbjct: 11 RERPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVFAIEISTDRNNWKSRGFGRVQFATLEA 70
Query: 3345 ATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVLW 3175
+K S + L+ + + L + D I RP + + GGVL VG MV + L VL
Sbjct: 71 KSKAHLLSLRNDLVFKSHSLKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLRVLE 130
Query: 3174 SARDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGA 2995
D + +++ F++ + E YK+E+ DD+ T + +LL+++
Sbjct: 131 RWEDVRGWLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVKYAP 190
Query: 2994 RIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHP 2815
RI+QK+S S + + CKE+ D W+RTTDFS + AVGQ++ F +
Sbjct: 191 RIYQKVSGPNIASKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAELLTL 250
Query: 2814 AFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILS 2635
+ L ++ S P +VP V+ P L Y+I F+LNSLVH +S
Sbjct: 251 DLFSCFSCYREDMKGLTLKGGGEFSSAPEIVPLVKGPSDSKLAYEILFQLNSLVHTQKIS 310
Query: 2634 APTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRL-YELKNTNPK 2467
++ + ++L L + A L + K ++TC P +++ L +N +
Sbjct: 311 IASVDTDLIDILR-----VLAVETAVMILQKFHKLLSTCYNPVSFVKENLPVSERNFQSR 365
Query: 2466 QLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDL 2287
L+S ++M +R LVTPSK+Y +GPEL SN V ++F+++ASDF+RVSFV+ED
Sbjct: 366 PLSSFKRLIDHNVMSCHRALVTPSKIYCLGPELETSNYVVKNFAEYASDFMRVSFVEEDW 425
Query: 2286 GRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENS 2107
G+L ANA++ ++ I +P+RT +Y RI+++L +GI I +KRFEFLAFS+SQLR NS
Sbjct: 426 GKLSANAISTSVQL--GIFSKPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNS 483
Query: 2106 VWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIE 1927
VWMF+S+ +TAE +R+WMG F+ IR+V+K AARMGQ FSSS T +V +V I DIE
Sbjct: 484 VWMFASNDKVTAEDVREWMGCFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIE 543
Query: 1926 VTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLS 1747
VT+ G+ YCFSDGIGKIS AR +A++CGL+ TPSAFQIRY GYKGVVAVD S+ K+S
Sbjct: 544 VTSDGINYCFSDGIGKISLPFAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMS 603
Query: 1746 LRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQM 1567
LR SM KF S R L+V WS+ +PC+LNREI+ LLSTLG+ DE+F++LQ++++ QM
Sbjct: 604 LRGSMHKFESKIRMLNVTKWSESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQM 663
Query: 1566 LENEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRI 1390
L N E A+D+L + DS+ IL++ML G P+ EP+L+ ML A LS+LK +CRI
Sbjct: 664 LTNREAALDVLQSLCGADSQNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRI 723
Query: 1389 FVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVAK 1216
+VP+G VL+GCLDET TL+YG+V++++S K + + + +++ T ++ G VVV K
Sbjct: 724 YVPKGQVLVGCLDETATLNYGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTK 783
Query: 1215 NPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPM 1042
NPCLHPGD+R L+AV L +VDC VFPQKG RPHPNECSG DLDGD +F+SWD
Sbjct: 784 NPCLHPGDVRVLEAVYEAELEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKD 843
Query: 1041 LVPPKKEPEEPMDYTG-RPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREP 865
L+P + + PMDYTG RP I +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADREP
Sbjct: 844 LIP--CQTDAPMDYTGSRPRI-MDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREP 900
Query: 864 LKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKL 685
KARSEKCLELA LH+ AVDFAKTGAPAEMP L PRE+PDFM++ KPMY S +LGKL
Sbjct: 901 DKARSEKCLELATLHSMAVDFAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKL 960
Query: 684 YRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYY 505
YR + + ++ + S+++ + YD E GF+ L A+ HK Y+ K++ LM YY
Sbjct: 961 YRATINSTVQERSKFVWSKKMAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYY 1020
Query: 504 GVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSF 325
V++E EI++GN+R + + +++ D KD+IL++++ L+ EAR F+ SCK+
Sbjct: 1021 EVESEDEILTGNMRNKATFLQRDNRRYGDMKDRILLSMKNLQREARERFENSCKVGEHQ- 1079
Query: 324 ALASAWYHVTYHSSYW--SKGNLISFPWIRYDLLLKTKRYNDTKIQK 190
LASAWYHVTYH +Y S + +SFPWI D+LLK K N +IQ+
Sbjct: 1080 RLASAWYHVTYHPNYCQESMKSCLSFPWIVGDILLKIKSVNSREIQR 1126
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 931 bits (2405), Expect = 0.0
Identities = 516/1128 (45%), Positives = 709/1128 (62%), Gaps = 25/1128 (2%)
Frame = -2
Query: 3522 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGS--CIVQFDNPG 3349
M T+ + P V A + +FL+S G G+V++ +++T + K G IVQF
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK---KGVGRLYAIVQFTTKE 57
Query: 3348 LATKICNRSTKGGLIIEGY-HLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSV 3181
A I + + + + G +L+ + ++D + RP +++ L G +S +V
Sbjct: 58 AADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAV 117
Query: 3180 LWSARDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQT 3001
LW + F F +KI+F + H E+Y++EL ++I + T +L++L
Sbjct: 118 LWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLG 177
Query: 3000 GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRK 2821
RIFQK +R Y F F KE D QW+RTTDF+ S +GQ++ C++ +
Sbjct: 178 APRIFQK-GIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236
Query: 2820 HPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 2641
P F EN +++ +D ++E S LVP V PDG+ LPY+I FK+N LV +G
Sbjct: 237 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 296
Query: 2640 LSAPTLTCEFFNVLTNPNYSPLHINI---ALSELFKSMTTCLQPNRWLQSRLYELKNTNP 2470
++ P L F+ L +P +P+ I+ AL +L+ C +P+RWL + Y T+
Sbjct: 297 VAGPLLDSNFYR-LVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ-YRKYMTSR 354
Query: 2469 KQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDED 2290
+ +S +S L+ +RV VTPS+VYF GPE+N SNRV RHF +F+R+SF+DED
Sbjct: 355 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 414
Query: 2289 LGRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLREN 2110
L ++H+ L+ + + DI RT +Y RI++ L NGI I +++FEFLAFSSSQLRE+
Sbjct: 415 LDKIHSTDLSPRGSSATDIT----RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 470
Query: 2109 SVWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDI 1930
S WMF+S LTA IR+WMGNF +IRNVAKYAAR+GQSFSSS T V E+ I D+
Sbjct: 471 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 530
Query: 1929 EVTTKGVKYCFSDGIGKISSKMARRIAKRCGL-DPTPSAFQIRYAGYKGVVAVDPTSYHK 1753
++ KY FSDGIGK+S++ AR++A +CGL D PSAFQIRY GYKGVVA DPTS K
Sbjct: 531 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 590
Query: 1752 LSLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFN 1573
LSLR SM K+ S+ LDVL WSK PC+LNR++I LLSTLG+ DE F+ QR+ V++ +
Sbjct: 591 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 650
Query: 1572 QMLENEENAIDILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKC 1396
+L + A + L LMS ++ IL E+L G P +EPFL+ MLQ FR L EL++K
Sbjct: 651 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 710
Query: 1395 RIFVPRGNVLIGCLDETRTLDYGEVFIQVSKT---KIKGNYDGDSSLEELETHVIEGDVV 1225
RIF+P G ++GCLDETRTL+YG+VF+Q+S ++ G SS + +++G VV
Sbjct: 711 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 770
Query: 1224 VAKNPCLHPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDP 1045
VAKNPCLHPGD+R LKAVNVP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD
Sbjct: 771 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 830
Query: 1044 MLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREP 865
L+PP+++P PMDYT +++LDH+V IE+++EYF NY++NDSLGIIANAH V ADREP
Sbjct: 831 ELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 888
Query: 864 LKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKL 685
KARSE CL+LA + AVDF KTG PAE+P L +EYPDFMEK KP YES +++GKL
Sbjct: 889 HKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL 948
Query: 684 YRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYY 505
+R D + + ++ V + +YD E +GF+DH+ +A HK YD KL LM YY
Sbjct: 949 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 1008
Query: 504 GVQNEAEIISGNIRMPSQGTINEKKKHSDRKD--KILMAVEALRTEARGWFDE--SCKLH 337
G++ EAEI++G+I S K + R+D I MAV ALR EAR WF E
Sbjct: 1009 GIKTEAEILTGSIMKMS-------KSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE 1061
Query: 336 HKSFALASAWYHVTYHSSYW-------SKGNLISFPWIRYDLLLKTKR 214
++A ASAWYHVTYH YW ++ + +SFPW YD L++ K+
Sbjct: 1062 DDAYAKASAWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKK 1109
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 931 bits (2405), Expect = 0.0
Identities = 504/1118 (45%), Positives = 715/1118 (63%), Gaps = 10/1118 (0%)
Frame = -2
Query: 3516 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 3337
ST+ + N+P + +A +L+ FL+S LG SVF+ +I TER NWKS GS VQF K
Sbjct: 7 STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66
Query: 3336 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVS---GGVLSVGNMVSESALSVLWSAR 3166
+ S + L+ +L L + D + RP ++ + GVL VG M+ E +SVL S
Sbjct: 67 AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126
Query: 3165 DCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 2986
A + ++I F++ H +E YK+E+ ++I T+ + + +LLKL+ RI+
Sbjct: 127 GVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIY 186
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
+K+S S + ++ C ED D W+RTT+FS +VGQ++ FC + +
Sbjct: 187 KKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIF 246
Query: 2805 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
PF++ Q ++++E+ +VP ++ G L Y++ ++LNSLVH +S
Sbjct: 247 SCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSA 306
Query: 2625 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 2446
+ + L + +N+ L L + C P +L+++L+ K S
Sbjct: 307 ANQDLIDFLCTLDIDTA-LNV-LQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQK 364
Query: 2445 SPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANA 2266
S ++M YRVLVTPS++Y +GPEL SN V ++FS +ASDF+RV+FV+ED +L A A
Sbjct: 365 RLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGA 424
Query: 2265 LTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSS 2086
+T + ++ IL +P+RT +Y RI+ +L +GI I KRFEFLAFS+SQLR NSVWMF+SS
Sbjct: 425 VTTSI--QRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASS 482
Query: 2085 KYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVK 1906
L AE IR+WMG FE IR+++K AARMGQ FSSS T +V +V I DIEV T G+
Sbjct: 483 DNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGID 542
Query: 1905 YCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLK 1726
YCFSDGIGKIS AR++A +CG++ PSAFQIRY GYKGV+AVD S+ KLSLR SMLK
Sbjct: 543 YCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLK 602
Query: 1725 FNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENA 1546
F S N+ L+V +PCYLNREI LLSTLGV DESF++LQ++++ +ML +++ A
Sbjct: 603 FESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVA 662
Query: 1545 IDILHLMSDRDS-KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNV 1369
+++L DS IL++ML+ G P+ EP+L+ MLQA S+L+S+CRIFVP+G +
Sbjct: 663 LNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRI 722
Query: 1368 LIGCLDETRTLDYGEVFIQVSKTKIK---GNYDGDSSLEELETHVIEGDVVVAKNPCLHP 1198
L+GCLDET L+YG+V+ ++ TK + N + +++E ++ ++ G VVV KNPCLHP
Sbjct: 723 LLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKS-ILLGKVVVTKNPCLHP 781
Query: 1197 GDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKK 1024
GD+R L+A+ L +VDC +FPQKG RPH NECSG DLDGDLYF+SWD L+PPK
Sbjct: 782 GDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPK- 840
Query: 1023 EPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEK 844
E PMDYTGR +DH+V +EEIQ++FV+YM+ND+LG I+ AH+VHADREP KA S K
Sbjct: 841 -TEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAK 899
Query: 843 CLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDR 664
CLELA LH+ AVDFAKTGAPAEMP L PRE+PDFME+ KPMY S+++LGKLYR +
Sbjct: 900 CLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKS 959
Query: 663 MEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAE 484
+E++ L+ S + YD E +GF+ L+ AE +K Y K++ LM YYG + E E
Sbjct: 960 IEQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDE 1019
Query: 483 IISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWY 304
I+ G++R + + +K+ D KD+IL++V+ LR E + WF+ SC ++ +ASAWY
Sbjct: 1020 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRM-MASAWY 1078
Query: 303 HVTYHSSYWSKGNL-ISFPWIRYDLLLKTKRYNDTKIQ 193
HVTYH SY+ + SFPW D+LL K N + Q
Sbjct: 1079 HVTYHPSYFKEDMFYFSFPWAVSDVLLNIKAMNSKRHQ 1116
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 928 bits (2399), Expect = 0.0
Identities = 500/1119 (44%), Positives = 720/1119 (64%), Gaps = 14/1119 (1%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + N+P T+ A EL+ FL+S LG SVF+ +I ++ NWKS G +QF +
Sbjct: 11 TVRVTNIPCTITATELLHFLESALGPDSVFAVEIVSDHKNWKSRGYGRIQFTALRHKARA 70
Query: 3333 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVLWSARD 3163
+ S+ L + ++L + D I RP + ++ VL G +V++ +SVL S
Sbjct: 71 QSLSSSADLFFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVLHAGFVVNDETMSVLESWEG 130
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 2983
A + +++ F+V + YK+E+ ++I + + LKL+ G +IF+
Sbjct: 131 VRAWVMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGDKVNALRLKLKFGPKIFR 190
Query: 2982 KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFVE 2803
+LS S + + + CKED D W+R TDFSE ++G ++ FC +
Sbjct: 191 QLSGPNVASKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAGVFT 250
Query: 2802 NLPFFEMMQDELLMEN--DVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAP 2629
P F +L+ E+ D LL VP V+ + PY+I F+LN LVH +S
Sbjct: 251 TFPSFRKDVVDLMFEDGGDCLL--VSETVPLVKCEADMKFPYEILFQLNVLVHAQKISLA 308
Query: 2628 TL---TCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLN 2458
+ EFF L+ N+ L +L K TTC P +++ +L L+ + K+L+
Sbjct: 309 AVGSDLIEFFGGLSMDT-----ANVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRLS 363
Query: 2457 SLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRL 2278
++M +RVL+TPSK+Y +GPEL +SN V ++F+ +ASDF+RV+FV+ED G+L
Sbjct: 364 PHQRLMEHNVMSCHRVLITPSKIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKL 423
Query: 2277 HANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWM 2098
NAL+ + EQ +P+RT +Y+RI++IL +GI I +KRFEFLAFS+SQLR NSVWM
Sbjct: 424 PVNALSTSI--EQGFFAKPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWM 481
Query: 2097 FSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTT 1918
F+S+ + AE IR WMG F IR+V+K AARMGQ FSSS T V + +V I DIE TT
Sbjct: 482 FASNDSVKAEDIRDWMGCFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTT 541
Query: 1917 KGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRP 1738
GV YCFSDGIGKIS AR++A++CGL+ TPSAFQIRY GYKGV+AVD S+ KLSLR
Sbjct: 542 DGVSYCFSDGIGKISLSFARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRS 601
Query: 1737 SMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLEN 1558
SMLKF+SDNR L+V WS +PC+LNREII L+STLGV DE+F++LQ++++ +M ++
Sbjct: 602 SMLKFDSDNRMLNVTKWSSSMPCFLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKD 661
Query: 1557 EENAIDILHLMSDRDS-KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVP 1381
A+ L +S DS IL+++L G P+ EP+L+ MLQA + HL++LKS+CR++VP
Sbjct: 662 RNVALSSLEKLSGADSNNILVKLLLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVP 721
Query: 1380 RGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVAKNPC 1207
+G +L+GCLDET TL+YG+V+++++ TK + S + ++ T ++ G VVV KNPC
Sbjct: 722 KGRILVGCLDETGTLNYGQVYLRITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPC 781
Query: 1206 LHPGDIRKLKAVNVPGL--VHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVP 1033
LHPGDIR L+AV GL +MVDC +FPQKG RPHPNECSG DLDGDL+F+SWD L+P
Sbjct: 782 LHPGDIRVLEAVYDVGLEEKNMVDCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIP 841
Query: 1032 PKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKAR 853
P P PMDY+ R +DH+VT+EEIQ++FV+YM+ND+LG I+ AH+VH+D EP KA
Sbjct: 842 PTTVP--PMDYSARRPRNMDHDVTLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAM 899
Query: 852 SEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDS 673
S+KCLELA LH+ AVDFAKTGAPAE+ L P+E+PDFME+ +PMY S LGKLYR
Sbjct: 900 SKKCLELADLHSMAVDFAKTGAPAELSWILKPKEFPDFMERVERPMYISNGALGKLYRAI 959
Query: 672 YDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQN 493
+ ++ +++ S++ + YD+ E +GF+ L+ AE H+ Y K+ +LM YY
Sbjct: 960 RSSVVQEQTIVVWSQQRAEEAYDRELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATT 1019
Query: 492 EAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALAS 313
E EI++GN+R + + +++ D KD+IL++++ L+ EA+GWF+ SCK+ + LAS
Sbjct: 1020 EDEILTGNLRNRAAYLQRDNRRYFDLKDRILLSLKTLQKEAKGWFESSCKVSEQQ-RLAS 1078
Query: 312 AWYHVTYHSSYWSKG-NLISFPWIRYDLLLKTKRYNDTK 199
AWYHVTY+ +Y+ + N +SFPWI D+LL K N +
Sbjct: 1079 AWYHVTYNLAYFQEDMNCLSFPWIVGDILLNIKSLNSRR 1117
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 925 bits (2390), Expect = 0.0
Identities = 498/1128 (44%), Positives = 709/1128 (62%), Gaps = 18/1128 (1%)
Frame = -2
Query: 3528 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 3349
+R ++TV + N+P++ +A +L +F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQ 64
Query: 3348 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVL 3178
+ S +G L+ +G+ L + D I RP G+L G +V + VL
Sbjct: 65 DKLHCLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVL 124
Query: 3177 WSARDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTG 2998
+ D + + + F+V H E Y++E++ D+ + E+ + +LLKL+
Sbjct: 125 ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQKS-ALLLKLKHA 183
Query: 2997 ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKH 2818
+++Q++S S + + + CKED + W+RTTDFS ++G +S C + +G
Sbjct: 184 PKLYQRVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLS 243
Query: 2817 PAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 2638
+ +LP +L ++ + VP VR+P + LPY+I F+LNSLV +
Sbjct: 244 SDLLSSLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKI 303
Query: 2637 SAPTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYELKNTNPK 2467
S + + VL S L ++ A L ++ K +TC +P ++++RL+ L N
Sbjct: 304 SLGAVNPDLIEVL-----SKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKN 358
Query: 2466 QLNSLIVS-PSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDED 2290
QL+S + +M +RVLVTPSK+Y +GPEL SN + ++F++HASDF+RV+FV+ED
Sbjct: 359 QLSSSYSRLVNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEED 418
Query: 2289 LGRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLREN 2110
G+L NA V + EQ I +P+RT +Y RI++IL GI I KRF FLAFS+SQLR N
Sbjct: 419 WGKLFPNA--VSMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSN 476
Query: 2109 SVWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDI 1930
SVWMF+S++Y+ AE IR+WMG F IR+++K AARMGQ FS+S T V+ V + DI
Sbjct: 477 SVWMFASNEYVKAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDI 536
Query: 1929 EVTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKL 1750
EVT+ GV YCFSDGIGKIS AR++A++CGL+ TPSAFQIRY GYKGV+AVD S+ KL
Sbjct: 537 EVTSDGVSYCFSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKL 596
Query: 1749 SLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQ 1570
SLR SMLKF S NR L++ WS +PCYLNREI+ILLSTLGV D++ + L + ++ +
Sbjct: 597 SLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKALEDLLDNHLRLLGK 656
Query: 1569 MLENEENAIDILHLMSDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCR 1393
ML E A+D+L M D KIL+ ML G +P+ EP+L+ MLQ+ + +S+L+S+CR
Sbjct: 657 MLTTNEAALDVLESMGGGDVKKILMRMLLQGYAPNREPYLSMMLQSHFENQISDLRSRCR 716
Query: 1392 IFVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVA 1219
IF+P+G +L+GCLDET L YGEV+++++ TK + + ++++ T V+ G VVV
Sbjct: 717 IFIPKGRILVGCLDETGILKYGEVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVT 776
Query: 1218 KNPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDP 1045
KNPCLHPGD+R L+AV L VDC +FPQ G RPHPNECSG DLDGDLYF+ WD
Sbjct: 777 KNPCLHPGDVRVLEAVYEVTLEEKTWVDCIIFPQNGERPHPNECSGGDLDGDLYFICWDE 836
Query: 1044 MLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREP 865
L+P + PMDYTGR +DH VT+EEIQ +FV+YM++D+LG I+ AH+VHADREP
Sbjct: 837 SLIP--HQTVTPMDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREP 894
Query: 864 LKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKL 685
KA + KCL+LA LH+ AVDFAKTGA AEMP L PRE+PDFME+ KPMY S +LGKL
Sbjct: 895 DKALNSKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKL 954
Query: 684 YR---DSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALM 514
YR SY R D + + R + YD EG++ ++ A+ HK Y + +L+
Sbjct: 955 YRGVIKSYIRRNSDD---LSTDRAIQDAYDHDLLVEGYEAFIETAKTHKEMYLDSMNSLL 1011
Query: 513 KYYGVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKL-- 340
YYG + E EI++GN+R S + +++ + KD+IL++ ++L E +GWF C
Sbjct: 1012 NYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFSGCCTEDD 1071
Query: 339 HHKSFALASAWYHVTYHSSY-WSKGNLISFPWIRYDLLLKTKRYNDTK 199
H K L SAWYHVTYH SY N + FPW+ D+LL K +N K
Sbjct: 1072 HQK---LVSAWYHVTYHPSYCHESANCLGFPWVVGDILLNIKSHNTRK 1116
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 924 bits (2388), Expect = 0.0
Identities = 496/1126 (44%), Positives = 723/1126 (64%), Gaps = 15/1126 (1%)
Frame = -2
Query: 3528 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 3349
+R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRVTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQ 64
Query: 3348 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVL 3178
+ + S +G L+ +G+ L + D I RP Y G+L G ++ + VL
Sbjct: 65 SKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVL 124
Query: 3177 WSARDCNAEFSFQGQKISFYVGHGR-EDYKIELRLDDISATSAYINEDTDTPCILLKLQT 3001
+ + + + + F+V H + E Y++E++ DI T ED T +LLKL+
Sbjct: 125 ETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKT-ALLLKLKH 183
Query: 3000 GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRK 2821
+++Q++S S + + + C+ED + W+RTTDFS ++G +S C + +G
Sbjct: 184 APKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLL 243
Query: 2820 HPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 2641
+ LP+ +L+++ + LVP P + LPY+I F+LNSL+H
Sbjct: 244 SSDLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHK 303
Query: 2640 LSAPTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYEL-KNTN 2473
+S + + VL S L ++ A L ++ K +TC +P ++++RL+ L KN+
Sbjct: 304 ISLGAVKTDLIEVL-----SKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSK 358
Query: 2472 PKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDE 2293
+ +S ++++M +RVLVTPSKVY +GPEL SN + ++F+ HASDF+RV+FV+E
Sbjct: 359 NQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEE 418
Query: 2292 DLGRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRE 2113
D G+L NA+++ + EQ I +P+RT +Y RI++IL +G+ I +KRF FLAFS+SQLR
Sbjct: 419 DWGKLSPNAISMSV--EQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRS 476
Query: 2112 NSVWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIED 1933
NSVWMF+S++++ AE IR+WMG F IR+V+K AARMGQ FS+S+ T V+ V + D
Sbjct: 477 NSVWMFASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPD 536
Query: 1932 IEVTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHK 1753
IEVT+ GV YCFSDGIGKIS A ++A++CGL TPSAFQIRY GYKGV+AVD S+ K
Sbjct: 537 IEVTSDGVSYCFSDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRK 596
Query: 1752 LSLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFN 1573
LSLR SMLKF S NR L++ WS +PCYLNREI+ILLSTLGV D+ F+ L + +
Sbjct: 597 LSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLG 656
Query: 1572 QMLENEENAIDILHLMSDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKC 1396
+ML E A+D+L + D KIL+ ML G +P+ EP+L+ MLQ+ + LS+L+S+C
Sbjct: 657 KMLTTNEAALDVLESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRC 716
Query: 1395 RIFVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVV 1222
RIF+ +G VL+GCLDET L+YG+V+ +++ TK + S ++++ T V+ G+VVV
Sbjct: 717 RIFIHKGRVLVGCLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVV 776
Query: 1221 AKNPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWD 1048
KNPCLHPGD+R L+AV L VDC +FPQKG RPHPNECSG DLDGDLYF+SWD
Sbjct: 777 TKNPCLHPGDVRVLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWD 836
Query: 1047 PMLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADRE 868
L+P ++ PMDYTGR +DH VT++EIQ +FV+YM++D+LG I+ AH+VHADRE
Sbjct: 837 ENLIP--RQTVTPMDYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADRE 894
Query: 867 PLKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGK 688
P KA + KCL+LA LH+ AVDFAKTGA AEMP L PRE+PDF+E+ KPMY S +LGK
Sbjct: 895 PDKALNPKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGK 954
Query: 687 LYRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKY 508
LYR + + S R + YD + ++G++ ++ A+ HK Y ++ +L+ Y
Sbjct: 955 LYRAIVNSSVRSNSDDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNY 1014
Query: 507 YGVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKL-HHK 331
YG + E EI++GN+R S + +++ + KD+IL++ ++L+ E +GWF CK HK
Sbjct: 1015 YGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHK 1074
Query: 330 SFALASAWYHVTYHSSYW-SKGNLISFPWIRYDLLLKTKRYNDTKI 196
LASAWYHVTYH SY N + FPW+ D+LL K +N KI
Sbjct: 1075 K--LASAWYHVTYHPSYCEGSANCLGFPWVVGDILLDIKLHNTRKI 1118
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 923 bits (2385), Expect = 0.0
Identities = 503/1134 (44%), Positives = 717/1134 (63%), Gaps = 28/1134 (2%)
Frame = -2
Query: 3516 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 3337
+TV + N+P+T +A +L+ FL+S LG+ SVF+ +I T+R+NWKS G VQF + +K
Sbjct: 4 ATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSK 63
Query: 3336 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVLWSAR 3166
N S L+ +L + D + RP + V GVL VG M E L VL +
Sbjct: 64 AQNLSLNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFE 123
Query: 3165 DCNAEFSFQGQKISFYVG--HGRE---------------DYKIELRLDDISATSAY-INE 3040
+++ F+V H E +K+E+ +D+ T + ++E
Sbjct: 124 GVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDE 183
Query: 3039 DTDTPCILLKLQTGARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQ 2860
IL KL+ G +I+QK+S S + + + CKED D W+RTTDFS + ++G
Sbjct: 184 GATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGC 243
Query: 2859 ASVFCLDFANGRKHPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYD 2680
++ F + NG PF++ + +L++E +VP V+ G L ++
Sbjct: 244 STSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHE 303
Query: 2679 IAFKLNSLVHHGILSAPTLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQS 2500
+ F+LNSLVH+ +S E +L + + L +L K + C P ++++
Sbjct: 304 VLFQLNSLVHNQKVSLVAADAELIQILNGLSMETALM--VLQKLHKLKSICYDPVSFVKT 361
Query: 2499 RLYEL-KNTNPKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHAS 2323
+L+ L +N L+S ++M YR LVTP K+Y +GPEL SN V ++F+ +AS
Sbjct: 362 QLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYAS 421
Query: 2322 DFIRVSFVDEDLGRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEF 2143
DF+RV+FV+ED +L ANAL+ + ++ I +P+RT +Y RI+ IL +GI I +K +EF
Sbjct: 422 DFMRVTFVEEDWSKLPANALSTSI--QRGIFAKPYRTKIYSRILTILQDGIVIGDKHYEF 479
Query: 2142 LAFSSSQLRENSVWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIV 1963
LAFS+SQLR NSVWMF+S+ ++AE +R+WMG F I +V+K AARMGQ FSSS T +V
Sbjct: 480 LAFSASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIHSVSKCAARMGQLFSSSKQTLVV 539
Query: 1962 KEHEVHAIEDIEVTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGV 1783
+V I D+EVT+ G YCFSDGIGKIS AR++A++CGL TPSAFQIRY GYKGV
Sbjct: 540 PVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
Query: 1782 VAVDPTSYHKLSLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQS 1603
+AVD S+ KLSLR SMLKF S NR L+V WS+ +PC+LNREII LLSTLGV D+ F++
Sbjct: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDDVFEA 659
Query: 1602 LQRDEVQKFNQMLENEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRD 1426
+Q+ ++ +ML N E A+D+L ++ DSK IL++ML G P+ EP+L+ ML + +
Sbjct: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
Query: 1425 FHLSELKSKCRIFVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE-- 1252
LS+LKS+CRI+VP+G +LIGC DET L+YG+VF++V+ T+ + S ++
Sbjct: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
Query: 1251 THVIEGDVVVAKNPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDL 1078
T +++G V+V KNPCLHPGD+R L+AV L VDC +FPQKG RPHPNECSG DL
Sbjct: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
Query: 1077 DGDLYFVSWDPMLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIA 898
DGD++F+SWD L+P + EP PMDYTGR + +DH+VT+EEI ++FV+YM+ND+LG I+
Sbjct: 840 DGDIFFISWDNDLIPCETEP--PMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIS 897
Query: 897 NAHVVHADREPLKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKP 718
AH+VHADR+P KARS KCL LA LH+ AVDFAKTGAPAEMPL L P+E+PDFME+E KP
Sbjct: 898 TAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKP 957
Query: 717 MYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWY 538
Y S +LGKLYR + D + + + S ++ + +YD E +GF+ L AE HK Y
Sbjct: 958 RYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMY 1017
Query: 537 DSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWF 358
+ ++ ALM YYG E EI++GN+R + + +++ D KD+IL++ + L+ EA+ WF
Sbjct: 1018 EEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWF 1077
Query: 357 DESCKLHHKSFALASAWYHVTYHSSYW-SKGNLISFPWIRYDLLLKTKRYNDTK 199
SCK ++ LASAWYHVTY SY + L+SFPWI D+LL K N K
Sbjct: 1078 GSSCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRK 1130
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 922 bits (2382), Expect = 0.0
Identities = 505/1127 (44%), Positives = 713/1127 (63%), Gaps = 16/1127 (1%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + N+P+T +A EL FL+S LG ++++ +I TE NWKS G VQF+
Sbjct: 8 TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67
Query: 3333 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCY---SVSGGVLSVGNMVSESALSVLWSARD 3163
S +G L+ G L + D I RP V GVL VG +V + + VL S
Sbjct: 68 DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEG 127
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 2983
+ ++ F+V E YK+E+ DD+ +SA +LLKL+ +IFQ
Sbjct: 128 VKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQ 187
Query: 2982 KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFVE 2803
K + S + + + KED + W+RTTDFS ++GQ++ FC + G
Sbjct: 188 KFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFA 247
Query: 2802 NLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPTL 2623
+ P+++ + + L + + S LVP V+ G L Y+I F+LNSLVH +S +
Sbjct: 248 SFPYYKDLTELTLEQGEGFCSDSG-LVPLVKCESGPKLAYEILFQLNSLVHAQKISLAAV 306
Query: 2622 TCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLY----ELKNTNPKQ 2464
+ +L+N L ++ A L +L K +T P +++++ + +KN P
Sbjct: 307 DTDLIEILSN-----LPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSS 361
Query: 2463 LNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLG 2284
+ L + ++M +RVLVTPSK+Y +GPEL SN V +H++ +ASDF+RVSFV+ED
Sbjct: 362 HSRLT---NNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWS 418
Query: 2283 RLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSV 2104
+L +NAL++ ++ + P+RT +Y RI++IL GI I KRF+FLAFS+SQLR NSV
Sbjct: 419 KLPSNALSMSIR--KAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSV 476
Query: 2103 WMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEV 1924
WMF+S+ + + IR+WMG F+ IR+V+K AARMGQ FSSS T V +V I DIEV
Sbjct: 477 WMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEV 536
Query: 1923 TTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSL 1744
T+ G YCFSDGIGKIS A+++A++CGL TPSAFQIRY GYKGV+AVD S+ KLSL
Sbjct: 537 TSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSL 596
Query: 1743 RPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQML 1564
R SMLKF S NR L+V WS+ PCYLNREI+ LLSTLGV DE+F++L +++ ++ML
Sbjct: 597 RSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKML 656
Query: 1563 ENEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIF 1387
N + A+D+L M D+K IL +ML G P+ EP+L+ MLQA+R+ LS+++++CRIF
Sbjct: 657 TNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIF 716
Query: 1386 VPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVAKN 1213
VP+ VLIGCLDET L+YG+V+++V+ TK + S ++++ T V+ G V+V KN
Sbjct: 717 VPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKN 776
Query: 1212 PCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPML 1039
PCLHPGDIR L AV L +VDC +FPQKG RPHPNECSG DLDGD +F+ WD L
Sbjct: 777 PCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGL 836
Query: 1038 VPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLK 859
+P + E PMDYT R +DH+VT+EEIQ++FV+YM+ND+LG+I+ AH+VHADREP K
Sbjct: 837 IP--SQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEK 894
Query: 858 ARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYR 679
ARS+KCLELA LH+ AVDFAKTGAPAEMP L P+E+PDFME+ KPMY S LGKLYR
Sbjct: 895 ARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYR 954
Query: 678 DSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGV 499
+ + + S + YD E +GF+ L+ A+LHK Y K+A LM +YG
Sbjct: 955 ATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGA 1014
Query: 498 QNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFAL 319
++E E+++GN+R + ++ ++ KD+IL++V++L+ EA+ W SCK H +
Sbjct: 1015 ESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQ-KM 1073
Query: 318 ASAWYHVTYHSSYWSK-GNLISFPWIRYDLLLKTKRYNDTKIQK*KE 181
ASAWYHVTYHS++ S+ N +SFPWI ++LL K N K + K+
Sbjct: 1074 ASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSRKAETSKD 1120
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 920 bits (2379), Expect = 0.0
Identities = 499/1130 (44%), Positives = 707/1130 (62%), Gaps = 20/1130 (1%)
Frame = -2
Query: 3528 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 3349
+R ++TV + N+P++ +A +L F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQ 64
Query: 3348 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVL 3178
+ + +G L+ +G+ L + D I RP G+L G +V + + VL
Sbjct: 65 DKLHCLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVL 124
Query: 3177 WSARDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTG 2998
+ D + + + F+V H E Y++E++ D++ + + +LLKL+
Sbjct: 125 ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTE-GTLCSVENQKSALLLKLKHA 183
Query: 2997 ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKH 2818
+++Q++S S + + + CKED + WIRTTDFS ++G +S C + +G
Sbjct: 184 PKLYQRVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLS 243
Query: 2817 PAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 2638
+LP +L ++ + VP VR+P + LPY+I F+LNSLV +
Sbjct: 244 SDLFSSLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKI 303
Query: 2637 SAPTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYELKNTN-- 2473
S + VL S L ++ A L ++ K + C P ++++RL+ L N
Sbjct: 304 SLGAINPNLIEVL-----SKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKN 358
Query: 2472 -PKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVD 2296
P S +V+ S +M +RVLVTPSK+Y +GPEL SN + ++F+ HASDF+RV+FV+
Sbjct: 359 RPSSSYSRLVNHS--MMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVE 416
Query: 2295 EDLGRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLR 2116
ED G+L NA V + EQ I +P+RT +Y RI++IL GI I KRF FLAFS+SQLR
Sbjct: 417 EDWGKLFPNA--VSMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLR 474
Query: 2115 ENSVWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIE 1936
NSVWMF+S++Y+ AE IR+WMG F IR+++K AARMGQ FS+S T VK V +
Sbjct: 475 SNSVWMFASNEYVKAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILP 534
Query: 1935 DIEVTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYH 1756
DIEVT+ GV YCFSDGIGKIS AR++A++CGL+ TPSAFQIRY GYKGV+AVD S+
Sbjct: 535 DIEVTSDGVSYCFSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFR 594
Query: 1755 KLSLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKF 1576
KLSLR SMLKF S NR L++ WS +PCYLNREI+ILLSTLGV D++F+ L + +
Sbjct: 595 KLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKAFEDLLDNHLCLL 654
Query: 1575 NQMLENEENAIDILHLMSDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSK 1399
+ML E A+D+L M + KIL+ ML G +P+ EP+L+ MLQ+ + +S+L+S+
Sbjct: 655 GKMLTTNEAALDVLESMGGGEVKKILMRMLLQGYAPNQEPYLSMMLQSHFENQISDLRSR 714
Query: 1398 CRIFVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVV 1225
CRIF+P+G +L+GCLDET L YG+V+++++ TK + + ++++ T V+ G VV
Sbjct: 715 CRIFIPKGRILVGCLDETGILKYGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVV 774
Query: 1224 VAKNPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSW 1051
V KNPCLHPGD+R L+AV L VDC +FPQKG RPHPNECSG DLDGDLYF+ W
Sbjct: 775 VTKNPCLHPGDVRVLEAVYEVTLEEKTWVDCIIFPQKGERPHPNECSGGDLDGDLYFICW 834
Query: 1050 DPMLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADR 871
D L+P + PMDYTGR +DH VT+EEIQ +FV+YM++D+LG I+ AH+VHADR
Sbjct: 835 DESLIP--CQTVTPMDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADR 892
Query: 870 EPLKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILG 691
EP KA + KCL+LA LH+ AVDFAKTGA AEMP L PRE+PDFME+ KPMY S +LG
Sbjct: 893 EPDKALNSKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLG 952
Query: 690 KLYR---DSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAA 520
KLYR SY R D + + R + YD EG++ + A+ HK+ Y + +
Sbjct: 953 KLYRGVMKSYIRRNSDD---LSADRAIQDAYDHDLLVEGYEAFTETAKTHKAMYLDSMNS 1009
Query: 519 LMKYYGVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKL 340
L+ YYG + E EI++GN+R S + +++ + KD+IL++ ++L E +GWF C+
Sbjct: 1010 LLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFTSCCQE 1069
Query: 339 --HHKSFALASAWYHVTYHSSY-WSKGNLISFPWIRYDLLLKTKRYNDTK 199
H K LASAWYHVTYH SY N + FPW+ D+LL K +N K
Sbjct: 1070 DDHQK---LASAWYHVTYHPSYCHESANCLGFPWVVGDILLNMKSHNTRK 1116
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 919 bits (2374), Expect = 0.0
Identities = 490/1120 (43%), Positives = 720/1120 (64%), Gaps = 15/1120 (1%)
Frame = -2
Query: 3522 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 3343
+S TV + N+P++ A +L++FL+S LG +VF+ +I ++ NWKS G VQF+
Sbjct: 8 LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67
Query: 3342 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSVGNMVSESALSVLWSARD 3163
++ + S L+ + L + D D I RP + + GVL G M+S+ +SVL S
Sbjct: 68 SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFMLSDHRMSVLESWEG 127
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 2986
Q +++ F+V H + Y++E +DI + Y + ED +LLK++ G RI+
Sbjct: 128 IAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIY 187
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
+K + + + + + ++F KED + W+RTTDFS ++G ++ FC +
Sbjct: 188 KKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVF 247
Query: 2805 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
+ P ++ +L +E+ L VP V+ LPY+ F+LNSLVH +S +
Sbjct: 248 TSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLAS 307
Query: 2625 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 2446
+ E ++L + + + +L K TC +P ++++++L+ L N L+
Sbjct: 308 VDDELIDLLADLDEETRAV--VFQKLHKMSFTCYEPLKFVKTQLHVLSNKK----KGLLQ 361
Query: 2445 SPSK-----DLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 2281
SP ++M +R L+TP+K+Y +GPEL SN V +HF+ ASDF+R++FV+E+ +
Sbjct: 362 SPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNK 421
Query: 2280 LHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVW 2101
L NA++ + ++ I +P +T +Y+RI+ IL +GI I +KRFEFLAFS+SQLR NSVW
Sbjct: 422 LPTNAVSTGV--QKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVW 479
Query: 2100 MFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVT 1921
+F+S+ L A IR+WMG F +IR+V+K AARMGQ FSSS T V +V I DIEVT
Sbjct: 480 LFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVT 539
Query: 1920 TKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLR 1741
+ GV YCFSDGIGKIS AR++A++ LD TPSAFQIRY G+KGV+A+D S+ KLSLR
Sbjct: 540 SDGVSYCFSDGIGKISQCFARQVAQKLNLDHTPSAFQIRYGGFKGVIAIDRHSFRKLSLR 599
Query: 1740 PSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLE 1561
SMLKF S+NR L V WS+ +PC+LNREII LL+TLGV DE ++Q+D++ +ML
Sbjct: 600 SSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLT 659
Query: 1560 NEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFV 1384
+ + A+D+L ++ DSK IL++ML P+SEP+L+ ML+A+ + LS+LKS+CRIFV
Sbjct: 660 DSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFV 719
Query: 1383 PRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE----THVIEGDVVVAK 1216
P+G VL+GCLDET L+YG+VF++++ K + N+ GD +L +++ T +I G VVV K
Sbjct: 720 PKGRVLVGCLDETGLLNYGQVFVRITVAKTRENF-GDENLRKVDGDDSTRIIVGKVVVTK 778
Query: 1215 NPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPM 1042
NPCLHPGDIR L A+ L + DC VFPQKG+RPHPNECSG DLDGDL+F+SWD
Sbjct: 779 NPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKD 838
Query: 1041 LVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPL 862
L+P + E PMDYTGR +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADRE
Sbjct: 839 LIP--CQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQD 896
Query: 861 KARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLY 682
KA+S KCLELA LH+ AVDFAKTGAPA MP L PRE+PDFME+ KPMY S +LGKLY
Sbjct: 897 KAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLY 956
Query: 681 RDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYG 502
+ + + + S + + YD+S E GF+ L+ A HK Y K+++LM +YG
Sbjct: 957 HAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYG 1016
Query: 501 VQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFA 322
+ E E++ GN++ + + +++ D KD+IL++V+ L+ EA+ WF+ SC+
Sbjct: 1017 AETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYK-P 1075
Query: 321 LASAWYHVTYHSSYWSKGN--LISFPWIRYDLLLKTKRYN 208
+ASAWYHVTYH S++ + + +SFPWI D+LL+ + N
Sbjct: 1076 MASAWYHVTYHRSHYCQESPCFLSFPWIVGDILLQIRSVN 1115
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 917 bits (2370), Expect = 0.0
Identities = 491/1125 (43%), Positives = 718/1125 (63%), Gaps = 18/1125 (1%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + N+P++ A +L+ FL+S +G SVF+ +I ++ +NWKS GS VQF+ +K
Sbjct: 10 TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69
Query: 3333 CNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVLWSARD 3163
+ S+ L+ + L + D + RP C + G L G + +SV+ S
Sbjct: 70 LSLSSNDKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEG 129
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 2983
+ ++ F+V H + +K+E+ ++I + ++ + +LLKL+ G RI+Q
Sbjct: 130 VKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQ 189
Query: 2982 KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFVE 2803
++ + + + ++FCKED W+RTTDFS ++G ++ FC +
Sbjct: 190 RMEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFR 249
Query: 2802 NLPFF-EMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
+ P + E ++D L + + SP VP V+ LPY+ F+LNSLVH +S +
Sbjct: 250 SFPLYRENLKDLSLEDGEEFCSPT-ETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLAS 308
Query: 2625 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQLN 2458
+ E +++ + + + +L K +TC +P R+++++L+ L K+ P
Sbjct: 309 VDDELIDLIASLDDETKAV--IFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQK 366
Query: 2457 SLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRL 2278
L ++M +R L+TPSK+Y +GPEL SN V +HF+ +ASDF+R++FV+ED +L
Sbjct: 367 RLA---DNNIMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKL 423
Query: 2277 HANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWM 2098
NA++ L ++ I +P+RT++Y+R++ IL +GI I +KRFEFLAFS+SQLR NSVW+
Sbjct: 424 PINAVSTSL--QKGIFAKPFRTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWL 481
Query: 2097 FSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTT 1918
F+S+ + AE IR+WMG+F +IR+V+K AARMGQ FSSS T + +V I DIE+T+
Sbjct: 482 FASNDKVKAEDIREWMGSFTNIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTS 541
Query: 1917 KGVKYCFSDGIGKISSKMARRIAKRCGLDPT--PSAFQIRYAGYKGVVAVDPTSYHKLSL 1744
G+ YCFSDGIGKIS A+++A++ LD + PSAFQIRY GYKGV+AVD S+ KLS+
Sbjct: 542 DGINYCFSDGIGKISLSFAKQLAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSFRKLSM 601
Query: 1743 RPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQML 1564
R SMLKF S NR L V WS+ +PC+LNREII LLSTLGV DE+ ++Q +++Q +ML
Sbjct: 602 RNSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQEEQLQLLGKML 661
Query: 1563 ENEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIF 1387
+ E A+D+L +S DS+ IL++ML+ P+SEP+L+ ML+A + LS+LKS+CRIF
Sbjct: 662 TDREAALDVLESLSGADSRSILVKMLNGFYEPNSEPYLSMMLKAHYAYQLSDLKSRCRIF 721
Query: 1386 VPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE----THVIEGDVVVA 1219
VP+G VLIGCLDET L+YG+VF++++ TK K GD +L+ ++ T +I G VVV
Sbjct: 722 VPKGRVLIGCLDETGILNYGQVFVRITVTKTKEKI-GDENLQNVDGDDSTRIIVGKVVVT 780
Query: 1218 KNPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDP 1045
KNPCLHPGDIR L A+ L + DC VFPQKG RPHPNECSG DLDGDL+F+SWD
Sbjct: 781 KNPCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPRPHPNECSGGDLDGDLFFISWDK 840
Query: 1044 MLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREP 865
L+PP + + PMDYTGR +DH VT+EEI ++FV+YM+ND+LG I+ AH+VHADREP
Sbjct: 841 DLIPP--QTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREP 898
Query: 864 LKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKL 685
KARS KCLELA LH+ AVDFAKTGAPAEMP L PRE+PDFME+ KPMY S +LGKL
Sbjct: 899 EKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYISNGVLGKL 958
Query: 684 YRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYY 505
YR + + ++ S + + YD E GF+ L+ A HK Y K+++LM +Y
Sbjct: 959 YRALVESTTQVRSNIVLSEKFAEEAYDHQLEVNGFEAFLETASSHKEMYAQKMSSLMSFY 1018
Query: 504 GVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSF 325
+ E E+++GN++ + + +++ D KD+IL++V+ L+ EA+ WF+ C+ H
Sbjct: 1019 DAETEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHEYQL 1078
Query: 324 ALASAWYHVTYHSSY-WSKGNLISFPWIRYDLLLKTKRYNDTKIQ 193
+ASAWYHVTYH Y +SFPWI D+LL K N TK++
Sbjct: 1079 -MASAWYHVTYHPKYSHESSTFLSFPWIVGDILLHIKSVN-TKVE 1121
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 917 bits (2369), Expect = 0.0
Identities = 495/1115 (44%), Positives = 707/1115 (63%), Gaps = 10/1115 (0%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + N+P+TV A EL+ FL S LG SVF+ +I ++ NWKS G VQF ++
Sbjct: 8 TVRVSNIPQTVTAKELLSFLQSKLGTDSVFAVEIISDHKNWKSRGFGRVQFTTLEAKSEA 67
Query: 3333 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVLWSARD 3163
+ S + GL+ + L + D I RP ++G VL G MV +S+L S
Sbjct: 68 YSLSLQNGLVFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLESWEG 127
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 2983
A + +++ F+V E YK+E+ ++I + +LLKL+ G RIF+
Sbjct: 128 VRAWVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPRIFR 187
Query: 2982 KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFVE 2803
K+S + + + + CK+D D W+RTTDFS+ ++G ++ FC + E
Sbjct: 188 KISGPNVAARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSDVFE 247
Query: 2802 NLPFFEMMQD-ELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
P+++ +L+++N VP V+ LPY+I F+LN+LVH +S
Sbjct: 248 CFPYYKDNDVVDLILDNGEKYCSPSETVPLVKCRSDSKLPYEILFQLNALVHSQKISLAA 307
Query: 2625 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 2446
+ L+ + N+ L +L K TTC P +L+ +L+ L+ + + +
Sbjct: 308 TDSDLIEFLSGLSVDTT--NVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSPYKR 365
Query: 2445 SPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANA 2266
++M +RVL+TPSK+ +GPEL +SN V ++F+ +ASDF+RV+FVDED +L ANA
Sbjct: 366 LMEHNVMSCHRVLITPSKICCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPANA 425
Query: 2265 LTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSS 2086
++ + +Q I +P RT +Y R+++IL +GI I KRFEFLAFS+SQLR +SVWMFSS+
Sbjct: 426 ISTSI--QQGIFAKPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSN 483
Query: 2085 KYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVK 1906
+ AE IR+WMG F IR+++K AARMGQ FSSS T +V +V I D+E ++ GV
Sbjct: 484 DNVKAEDIREWMGCFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVT 543
Query: 1905 YCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSMLK 1726
YCFSDGIGKIS AR++A++CGLD TPSAFQIRY GYKGV+AVD S+ KLSLR SMLK
Sbjct: 544 YCFSDGIGKISLSFARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSMLK 603
Query: 1725 FNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEENA 1546
F S NR L+V WS +PCYLNREII LLSTLGV DE+F++LQ ++++ +M A
Sbjct: 604 FESKNRMLNVTKWSDAMPCYLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGAA 663
Query: 1545 IDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGNV 1369
+++ ++ DSK L++ML G P++EP+L+ MLQA+ + HLS+LKS+CRIFVP+G V
Sbjct: 664 LNVFERLNGADSKNTLVKMLLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGRV 723
Query: 1368 LIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE--THVIEGDVVVAKNPCLHPG 1195
L+GCLDET LDYG+V+++++ TK + S ++++ T V+ G VVV KNPCLHPG
Sbjct: 724 LVGCLDETGNLDYGQVYVRITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHPG 783
Query: 1194 DIRKLKAVN--VPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPKKE 1021
D+R L AV V +MVDC +FPQKG RPHPNECSG DLDGDL+F+SWD LVP
Sbjct: 784 DVRVLDAVYDVVLEEKNMVDCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHTV 843
Query: 1020 PEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKC 841
P PMDY+ R +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHAD EP KA + KC
Sbjct: 844 P--PMDYSARRPRIMDHTVTLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKC 901
Query: 840 LELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRM 661
L+LA LH+ AVDFAKTGAPAEM L P+E+PDFME+ KPMY S LGKLYR +
Sbjct: 902 LQLADLHSMAVDFAKTGAPAEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSV 961
Query: 660 EEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEI 481
++ L+ S ++ + YD+ E +G + L+ A+ H+ Y K+ +M YYG E EI
Sbjct: 962 LQEKTNLVWSEQIAEAAYDQDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEI 1021
Query: 480 ISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYH 301
++GN+R + + +++ D KD+I ++++ L+ EA+G F+ SC + +ASAWYH
Sbjct: 1022 LTGNLRNRAAYLQRDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPVSEHQ-RMASAWYH 1080
Query: 300 VTYHSSYWSKG-NLISFPWIRYDLLLKTKRYNDTK 199
VTYH SY+ + N +SFPWI D+LL K N+ +
Sbjct: 1081 VTYHPSYFQQDMNCLSFPWIVGDILLNIKALNNPR 1115
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 916 bits (2368), Expect = 0.0
Identities = 512/1137 (45%), Positives = 709/1137 (62%), Gaps = 26/1137 (2%)
Frame = -2
Query: 3522 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGS---CIVQFDNP 3352
MS TV + P + A + FL+S G G+V + +I+ RT GG+ IVQF
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRT----GGARKYAIVQFTTT 56
Query: 3351 GLATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSV 3181
A +I + + Y L+ + D+D I +P +++ L G S+ S
Sbjct: 57 RAAEQIISLANPRLWYGHSY-LNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSA 115
Query: 3180 LWSARDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQT 3001
+WS + + F +K+ F++ H +YK+ L ++I + +L++L
Sbjct: 116 VWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYG 175
Query: 3000 GARIFQK--LSLRESFSAYLKNHFKFCKEDV-DVQWIRTTDFSESCAVGQASVFCLDFAN 2830
RI+++ S F L N+F+ DV D QW+RTTDF+ SC +G +S CL+ N
Sbjct: 176 APRIYERDVPSSSNVFEDPLLNYFR----DVPDEQWVRTTDFTPSCGIGHSSSLCLELPN 231
Query: 2829 GRKHPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVH 2650
+ P F EN +++ + ++E+ + S P LVP V GV LPY+I F++N LV
Sbjct: 232 HLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQ 291
Query: 2649 HGILSAPTLTCEFFNVLTNPNYSPLH-INIALSELFKSMTTCLQPNRWLQSRLYELKNTN 2473
+G L+ L F+ L +PN P+ I AL +L+ C +P++W + Y+ T+
Sbjct: 292 NGCLAGSMLDDIFYR-LVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQ-YKKYLTS 349
Query: 2472 PKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDE 2293
S ++S L+ Y+V +TP KV+F GPE+N SNRV R + + +F+RVSFVDE
Sbjct: 350 GNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDE 409
Query: 2292 DLGRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRE 2113
+L ++H+ ++ + + ++ RT +Y RI++ L NGI I +K+FEFLAFSSSQLRE
Sbjct: 410 ELEKIHSTDVSPRTSSRNELR----RTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRE 465
Query: 2112 NSVWMFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIED 1933
NS WMF+S LTA IR WMG+F IRNVA+YAAR+GQSF SS T V HE+ I D
Sbjct: 466 NSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPD 525
Query: 1932 IEVTTKGVKYCFSDGIGKISSKMARRIAKRCGLDP-TPSAFQIRYAGYKGVVAVDPTSYH 1756
IEV+ G +Y FSDGIGKIS++ AR++A +CG TPSAFQIRYAGYKGVVAVDPTS
Sbjct: 526 IEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSK 585
Query: 1755 KLSLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKF 1576
KLSLR SM K+ S+N LDVL SK PC+LNR++I LLSTLGVPD F+ QR+ V +
Sbjct: 586 KLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQL 645
Query: 1575 NQMLENEENAIDILHLMSD-RDSKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSK 1399
+ ML + A + L LMS ++ IL EML G P +EPFL+ MLQ FR L EL++K
Sbjct: 646 DAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTK 705
Query: 1398 CRIFVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEEL---ETHVIEGDV 1228
RIF+P G ++GCLDETRTL++G+VF++ S ++ + YD E + ++I+G V
Sbjct: 706 TRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSV 765
Query: 1227 VVAKNPCLHPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWD 1048
VVAKNPCLHPGD+R LKAV+VP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD
Sbjct: 766 VVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWD 825
Query: 1047 PMLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADRE 868
P L+P ++ PMDYT P ++LDH+VTIEE++EYF NY++NDSLG+IANAH HAD+E
Sbjct: 826 PELIPSQQI--SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKE 883
Query: 867 PLKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGK 688
LKA SE C+ELAR + AVDF KTG PAE+P L REYPDFMEK KP YES +++GK
Sbjct: 884 SLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGK 943
Query: 687 LYRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKY 508
L+R+ D + + V + YD E +GF+D++ +A +KS YD KL LM+Y
Sbjct: 944 LFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEY 1003
Query: 507 YGVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDE-SCKLHHK 331
YG++ EAE++SG+ S+ ++ + I MAV +L+ EAR WF+E L +
Sbjct: 1004 YGIKTEAELLSGSFMKMSKSFTKKRD-----AEAIGMAVRSLKKEARSWFNEKGSGLDSQ 1058
Query: 330 S---FALASAWYHVTYHSSYW-------SKGNLISFPWIRYDLLLKTKRYNDTKIQK 190
+ A ASAWYHVTYH +YW ++ + +SFPW YD L++ KR N +I++
Sbjct: 1059 ADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRR 1115
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 916 bits (2367), Expect = 0.0
Identities = 515/1131 (45%), Positives = 703/1131 (62%), Gaps = 30/1131 (2%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + P+ A + +FL+SI G G+V+ +I+ ++ S IVQF A I
Sbjct: 77 TVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAEVI 136
Query: 3333 CNRSTKG-GLIIEGYHLDVKLRDKDHIHRP--CYSVSGGV-LSVGNMVSESALSVLWSAR 3166
+ + + L ++ V+ + D + P Y V + L GN +SE + ++LWS
Sbjct: 137 YSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNT 196
Query: 3165 DCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 2986
+ EF F +KI FY+ H DYK++L ++I T ++L++Q RIF
Sbjct: 197 NVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIF 256
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
QK L S Y F + K+ D QW+R+ DF+ SC++GQ+S CL NG + P
Sbjct: 257 QK-PLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIR 315
Query: 2805 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
EN +++ + ++ S HLVP V PD + LPY I F++NSLV +G L PT
Sbjct: 316 ENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPT 375
Query: 2625 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 2446
L EF+N+L N SP + +L ++ + CL+P +WLQ + + +N P++ + +
Sbjct: 376 LDTEFYNLL-NGLPSPF-VERSLEDISRLTNCCLEPAKWLQEQYKKYRNL-PRRPSPAAI 432
Query: 2445 SPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANA 2266
S L+ +RV VTPSKVYF GPE+N SNRV R FS++ +F+R+SF+DED G + +
Sbjct: 433 SLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTD 492
Query: 2265 LTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMFSSS 2086
L+ ++ + + T VY R+++ L NGI I +K+FEFLAFSSSQLR+NS WMFS
Sbjct: 493 LSKRMASGAE----EKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPI 548
Query: 2085 KYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTKGVK 1906
+TA +IR+WMG+F IRNVAK AARMGQSF SS T VK EV I DI K K
Sbjct: 549 DGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDI----KNGK 604
Query: 1905 YCFSDGIGKISSKMARRIAKRCGL-DPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPSML 1729
Y FSDGIGKIS + A+++A +CG + TPSAFQIRY GYKGVVAVDPTS +KLSLR SM
Sbjct: 605 YVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMR 664
Query: 1728 KFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENEEN 1549
K++S+N LDVL +SK PC+LNR++I LLSTLGV D F++ Q+D V + +++L + E+
Sbjct: 665 KYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPES 724
Query: 1548 AIDILHLMSDRDS-KILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPRGN 1372
A + L LMS ++ +L EML G P SEPFL+ MLQ FR LSELK+K RIF+P G
Sbjct: 725 AFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGR 784
Query: 1371 VLIGCLDETRTLDYGEVFIQVSKTKIKGNYD-GDSSLEEL----ETHVIEGDVVVAKNPC 1207
++GCLDET L+YG+VF+Q S + ++ G S + E V+ G V+VAKNPC
Sbjct: 785 SMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPC 844
Query: 1206 LHPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLVPPK 1027
LHPGD+R L A++VP L HMV+C VFPQKG RPHPNECSGSDLDGD+YFVSWDPML+P
Sbjct: 845 LHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCH 904
Query: 1026 KEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSE 847
+ PM+Y P LDH VTIEEI+EYF NYM+NDSLGIIANAH V AD+EP+KA S
Sbjct: 905 QGT--PMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADST 962
Query: 846 KCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYD 667
C++LA L + AVDF KTG PA++P L +EYPDFM+K KP Y+S ++GKL+R+ D
Sbjct: 963 PCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKD 1022
Query: 666 RMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEA 487
+ ++ V +YD E +GF+ +L +A +KS YD KLA LM +YG++ EA
Sbjct: 1023 LPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEA 1082
Query: 486 EIISGNIRMPSQGTINEKKKHSDRKD--KILMAVEALRTEARGWFDE--------SCKLH 337
EI+SGNI ++ K + R+D I +A+ +LR E RGWF E L
Sbjct: 1083 EIVSGNI-------LSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLD 1135
Query: 336 HKSFALASAWYHVTYHSSYW---------SKGNLISFPWIRYDLLLKTKRY 211
+A ASAWYH+TYH YW ++ + ISFPW YD L+ KR+
Sbjct: 1136 DDVYAKASAWYHITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRH 1186
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 914 bits (2363), Expect = 0.0
Identities = 497/1127 (44%), Positives = 717/1127 (63%), Gaps = 19/1127 (1%)
Frame = -2
Query: 3513 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 3334
TV + N+P T A++L+ +L++ +G SVF+ +I ++ TNWKS G VQF+ +K
Sbjct: 10 TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69
Query: 3333 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVLWSARD 3163
+ L++ + L + D I RP ++ G L G + +SVL S
Sbjct: 70 LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTP-CILLKLQTGARIF 2986
+ Q++ F+V HG + +K+E+ ++I Y +++ P +LLKL+ G RI+
Sbjct: 130 VRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIY 189
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
QK++ + + + ++FCKE+ + W+RTTDFS ++G ++ F +
Sbjct: 190 QKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVF 249
Query: 2805 ENLPFF-EMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAP 2629
+ P + E ++D L + + SP VP V+ LPY+ F+LNSLVH +S
Sbjct: 250 RSFPLYRENLKDLSLEDGEKFCSPT-ETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLA 308
Query: 2628 TLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQL 2461
++ E ++L + + + +L K +TC +P ++++++L+ L K+ P Q
Sbjct: 309 SVNDELIDLLASLDAETKAV--IFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQ 366
Query: 2460 NSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 2281
L+ ++M +R L+TPSK+Y +GPEL SN V +HF+ +ASDF+R++FV+ED +
Sbjct: 367 KRLV---DNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSK 423
Query: 2280 LHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVW 2101
L NA+++ LK + + RP RT +Y+R++ IL +GI I +KRFEFLAFS+SQLR NSVW
Sbjct: 424 LPNNAISITLK--KGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVW 481
Query: 2100 MFSSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVT 1921
+F+S+ + A IR+WMG+F +IR+V+K AARMGQ FSSS T + +V I DIE+T
Sbjct: 482 LFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEIT 541
Query: 1920 TKGVKYCFSDGIGKISSKMARRIAKRCGLDPT--PSAFQIRYAGYKGVVAVDPTSYHKLS 1747
+ G+ YCFSDGIGKIS AR++A++ LD PSAFQIRY GYKGV+AVD S+ KLS
Sbjct: 542 SDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKLS 601
Query: 1746 LRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQM 1567
LR SMLKF S NR L V WS+ +PC+LNREII LLSTLG+ DE+ +LQ D++Q +M
Sbjct: 602 LRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKM 661
Query: 1566 LENEENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRI 1390
L ++E A+D+L ++ DS IL++ML P+SEP+L+ ML+A + LS+LKS+CRI
Sbjct: 662 LTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRI 721
Query: 1389 FVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE----THVIEGDVVV 1222
FVP+G VLIGCLDET L+YG+VF++++ K K + GD +L ++ T +I G VVV
Sbjct: 722 FVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKF-GDENLRNVDGDDSTRIIVGKVVV 780
Query: 1221 AKNPCLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWD 1048
KNPCLHPGDIR L AV L + DC VFPQKG+RPHPNECSG DLDGDL+F+SWD
Sbjct: 781 TKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWD 840
Query: 1047 PMLVPPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADRE 868
L+P + E PMDYTGR +DH VT+EEI ++FV+YM+ND+LG I+ AH+VHADRE
Sbjct: 841 KDLIPA--QTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADRE 898
Query: 867 PLKARSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGK 688
KA+S KCLELA LH+ AVDFAKTGAPAEMP L PRE+PDFME+ KPMY S +LGK
Sbjct: 899 HDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGK 958
Query: 687 LYRDSYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKY 508
LYR + D + ++ S + K YD E +GF+ L+ A H+ Y K+ +LM +
Sbjct: 959 LYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSF 1018
Query: 507 YGVQNEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKS 328
YG E E+++GN++ + + +++ D KD+IL++V+ L+ EA+ WF+ C+ H
Sbjct: 1019 YGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHEYQ 1078
Query: 327 FALASAWYHVTYHSSYW-SKGNLISFPWIRYDLLLKTKRYNDTKIQK 190
+ASAWYHVTYH Y+ +SFPWI D+LL K N KI K
Sbjct: 1079 L-MASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHIKSAN--KIHK 1122
Score = 124 bits (311), Expect = 3e-25
Identities = 86/260 (33%), Positives = 123/260 (47%), Gaps = 1/260 (0%)
Frame = -2
Query: 972 HNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKARSEKCLELARLHAKAVDFAKT 793
H + +I ++FV+YM+ D+LG I+ AH+VHAD E KA+S KCLELA LH+ AVDFAKT
Sbjct: 1113 HIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKT 1172
Query: 792 GAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRDSYDRMEEDPHVLMDSRRVCKI 613
GA AEMP L P+E+P D +R E+ +V S+ V
Sbjct: 1173 GALAEMPRVLKPKEFP----------------------DFMERFEKPMYV---SKGVL-- 1205
Query: 612 NYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQNEAEIISGNIRMPSQGTINEK 433
+L+++ +S + + + SGN IN K
Sbjct: 1206 -----------------GKLYRALVESTMQLTSNF--------VSSGNFLSKKHMIINLK 1240
Query: 432 KKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALASAWYHVTYHSSYWSKG-NLIS 256
+ L+ E + WF+ C+ H +ASAWYHV +H Y+ K N +S
Sbjct: 1241 -------------LMDLQLEVKEWFESDCQPHEHQL-MASAWYHVIHHPKYYHKSSNFVS 1286
Query: 255 FPWIRYDLLLKTKRYNDTKI 196
FPWI D+LL K N + +
Sbjct: 1287 FPWIVGDILLYVKHANTSTV 1306
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 914 bits (2361), Expect = 0.0
Identities = 484/1115 (43%), Positives = 717/1115 (64%), Gaps = 13/1115 (1%)
Frame = -2
Query: 3522 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 3343
+S+TV + N+P++ A +L++FL+S +G +VF+ +I ++ NWKS G VQF+
Sbjct: 9 LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68
Query: 3342 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSVGNMVSESALSVLWSARD 3163
++ + S L+ + L + D D I RP + + GVL G ++S+ +SVL S
Sbjct: 69 SRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGVLYAGFVLSDHRMSVLESWEG 128
Query: 3162 CNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 2986
+++ F+V H + Y++E +DI + Y + ED +LLK++ G RI+
Sbjct: 129 VAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIY 188
Query: 2985 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKHPAFV 2806
+K + + + + + ++FCKED + W+RTTDFS ++G ++ FC +
Sbjct: 189 KKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVF 248
Query: 2805 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 2626
++ P ++ +L +E+ VP V+ LPY+ F+LNSLVH +S +
Sbjct: 249 KSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLAS 308
Query: 2625 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTN---PKQLNS 2455
+ E ++L + + +L K TC +P ++++++L+ L N P+
Sbjct: 309 VDDELIDLLAGLDEETRAV--IFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQK 366
Query: 2454 LIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLH 2275
+ ++M +R L+TP+K+Y +GPEL SN V +HF+ HASDF+R++FV+E+ +L
Sbjct: 367 RLTD--SNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLP 424
Query: 2274 ANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENSVWMF 2095
NA++ + ++ + +P +T +Y+RI+ IL +GI I +KRFEFLAFS+SQLR NSVW+F
Sbjct: 425 TNAVSTGV--QKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLF 482
Query: 2094 SSSKYLTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDIEVTTK 1915
+S+ L A IR+WMG F +IR+V+K AARMGQ FSSS T V +V I D+EV +
Sbjct: 483 ASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISD 542
Query: 1914 GVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHKLSLRPS 1735
GV YCFSDGIGKIS AR++A++ LD TPSAFQIRY G+KGV+AVD S+ KLSLR S
Sbjct: 543 GVSYCFSDGIGKISQSFARQVAQKLKLDHTPSAFQIRYGGFKGVIAVDRRSFRKLSLRSS 602
Query: 1734 MLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFNQMLENE 1555
MLKF S N L V WS+ +PC+LNREII LLSTLGV DE ++Q D++ +ML +
Sbjct: 603 MLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDS 662
Query: 1554 ENAIDILHLMSDRDSK-ILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKCRIFVPR 1378
+ A+++L ++ DSK IL++ML P+SEP+L+ ML+A+ + LS+LKS+CRIFVP+
Sbjct: 663 KAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPK 722
Query: 1377 GNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELE----THVIEGDVVVAKNP 1210
G VL+GCLDET L+YG+VF++++ TK + + GD +L +++ T +I G VVV KNP
Sbjct: 723 GRVLVGCLDETGLLNYGQVFVRITVTKTREKF-GDENLRKVDGDDNTCIIVGKVVVTKNP 781
Query: 1209 CLHPGDIRKLKAVNVPGLVH--MVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLV 1036
CLHPGDIR L A+ L + DC VFPQKG+RPHPNECSG DLDGDL+F+SWD L+
Sbjct: 782 CLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLI 841
Query: 1035 PPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKA 856
P + E PMDYTGR +DH VT+EEIQ++FV+YM+ND+LG I+ AH+VHADRE KA
Sbjct: 842 P--CQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKA 899
Query: 855 RSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRD 676
+S KCLELA LH+ AVDFAKTGAPA MP L PRE+PDFME+ KPMY S +LGKLYR
Sbjct: 900 KSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRA 959
Query: 675 SYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQ 496
+ + + + S + + YD+S E GF+ L+ A HK Y K+++LM +YG +
Sbjct: 960 IIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAE 1019
Query: 495 NEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKSFALA 316
E E++ GN++ + + +++ D KD+IL++V+ L+ EA+ WF+ SC+ H +A
Sbjct: 1020 TEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHEYK-PMA 1078
Query: 315 SAWYHVTYHSSYWSKGN--LISFPWIRYDLLLKTK 217
SAWYHVTYH SY+ + + +SFPWI ++LL+ +
Sbjct: 1079 SAWYHVTYHPSYYCRESPCFLSFPWIVGEILLQIR 1113
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 912 bits (2358), Expect = 0.0
Identities = 506/1126 (44%), Positives = 704/1126 (62%), Gaps = 23/1126 (2%)
Frame = -2
Query: 3522 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 3343
M T+ + P +V ++ F++ GEG+VF+ +++ + + I+QF A
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFA-IIQFTTANSA 59
Query: 3342 TKICNRSTK--GGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVL 3178
T + +R+ L +L + ++D + RP +S+ LS G +S+ SVL
Sbjct: 60 TSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVL 119
Query: 3177 WSARDCNAEFSFQGQKISFYVGHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTG 2998
W +D F +K+ F H YK+EL ++I + + T +L++L
Sbjct: 120 WKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179
Query: 2997 ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSESCAVGQASVFCLDFANGRKH 2818
R+F+ + S + + F F K+ D QWIR DF+ +GQ+S CL+ NGR+
Sbjct: 180 PRVFEN-DVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238
Query: 2817 PAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 2638
P F EN ++E + + ++ V S LVP V P GV + YDI FK+NSLV H L
Sbjct: 239 PNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACL 298
Query: 2637 SAPTLTCEFFNVLTNPNYSPLH-INIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPK 2467
+ P L +F+ L +P P I AL +++ S C +P +WL Q + Y +P+
Sbjct: 299 AGPALDGDFYR-LVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR 357
Query: 2466 QLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDL 2287
S +S L+ RV +TP KVYF GPE+N SNRV RHF +H +F+RVSFVDE+L
Sbjct: 358 ---SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414
Query: 2286 GRLHANALTVKLKTEQDILERPWRTNVYERIIAILNNGIFINNKRFEFLAFSSSQLRENS 2107
+L + L+ + + + +T +Y RI++IL NGI + +K+FEFLAFSSSQLRENS
Sbjct: 415 DKLFSTDLSSRSQNK--------KTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENS 466
Query: 2106 VWMFSSSKY-LTAEHIRKWMGNFEDIRNVAKYAARMGQSFSSSWGTEIVKEHEVHAIEDI 1930
+WMF+ ++ TA +IRKWMGNF IRNVAKYAAR+GQSF SS T V EV I D+
Sbjct: 467 LWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDV 526
Query: 1929 E-VTTKGVKYCFSDGIGKISSKMARRIAKRCGLDPTPSAFQIRYAGYKGVVAVDPTSYHK 1753
+ +T G +Y FSDGIGKIS + A+++AK+CG D TPSAFQIRY GYKGVVAVDP S +K
Sbjct: 527 KKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYK 586
Query: 1752 LSLRPSMLKFNSDNRTLDVLNWSKPLPCYLNREIIILLSTLGVPDESFQSLQRDEVQKFN 1573
LSLR SM K++SDN LDVL SK PCYLNR++I LLSTLG+ D+ F+ QR+ V + N
Sbjct: 587 LSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLN 646
Query: 1572 QMLENEENAIDILHLMSDRD-SKILIEMLSSGCSPSSEPFLATMLQAFRDFHLSELKSKC 1396
+L + A ++L LMS + + +L EML G P+ EPFL+ MLQ FR L EL+ K
Sbjct: 647 TILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKS 706
Query: 1395 RIFVPRGNVLIGCLDETRTLDYGEVFIQVSKTKIKGNYDGDSSLEELETHVIEGDVVVAK 1216
RIF+P+G ++GCLDETRTL+YG+VF+Q S +++ D S + + ++++G VVVAK
Sbjct: 707 RIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAK 766
Query: 1215 NPCLHPGDIRKLKAVNVPGLVHMVDCAVFPQKGNRPHPNECSGSDLDGDLYFVSWDPMLV 1036
NPCLHPGD+R L+AV+VP L HMVDC VFPQKG RPHPNECSGSDLDGD+YFV WD L+
Sbjct: 767 NPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELI 826
Query: 1035 PPKKEPEEPMDYTGRPAIRLDHNVTIEEIQEYFVNYMLNDSLGIIANAHVVHADREPLKA 856
P + P +PMDYT + LDH+V IEE++EYF NY++NDSLGIIANAH V AD+E LKA
Sbjct: 827 PSR--PIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKA 884
Query: 855 RSEKCLELARLHAKAVDFAKTGAPAEMPLRLIPREYPDFMEKEGKPMYESTSILGKLYRD 676
S++C++LARL + AVDF KTG PA +P L +EYPDFMEK KP Y+S +++GKL+R+
Sbjct: 885 MSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFRE 944
Query: 675 SYDRMEEDPHVLMDSRRVCKINYDKSFEYEGFQDHLKEAELHKSWYDSKLAALMKYYGVQ 496
+ + ++ V + +YD E +GF D++ +A HK+ YD KL LM YYG++
Sbjct: 945 VKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIK 1004
Query: 495 NEAEIISGNIRMPSQGTINEKKKHSDRKDKILMAVEALRTEARGWFDESCKLHHKS---- 328
EAEI+ GNI M + N+++ + I MAV +LR EAR WF+E+ S
Sbjct: 1005 TEAEILGGNI-MKMSKSFNKRRD----AEAINMAVRSLRKEARAWFNENSSGDVDSGSSD 1059
Query: 327 -FALASAWYHVTYHSSYW-------SKGNLISFPWIRYDLLLKTKR 214
+A ASAWYHVTYH SYW ++ + +SF W Y LL++ K+
Sbjct: 1060 VYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKK 1105