BLASTX nr result
ID: Ephedra27_contig00002778
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00002778
(541 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, pa... 63 4e-08
gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Th... 63 4e-08
ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852... 61 2e-07
emb|CBI29694.3| unnamed protein product [Vitis vinifera] 61 2e-07
emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera] 60 4e-07
ref|XP_006389505.1| hypothetical protein POPTR_0022s00460g [Popu... 57 2e-06
ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Popu... 57 3e-06
ref|XP_002328787.1| predicted protein [Populus trichocarpa] gi|5... 57 3e-06
>gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, partial [Theobroma
cacao]
Length = 440
Score = 63.2 bits (152), Expect = 4e-08
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Frame = -3
Query: 446 ISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFKNQRREPGGRGKGGL 273
I+ A +K L LKG H +TSP + G + K R G +G L
Sbjct: 273 ITDAVKKKVLLLKGKEKEISPVAGNVLHQQNVTSPIKTILGSTPTKQNSRREGRMIRGIL 332
Query: 272 VNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK----------------SFDEAATSDLHAV 141
+NKD +Q+ QS +Q+E Q +T + +D R S D+ +DLH
Sbjct: 333 LNKDARQN-QSSGVQSEQQIRTSNLEKDRRPPRHSHSHLVLKDTNTASDDKVVGNDLHG- 390
Query: 140 PIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVIS 15
+EKP+R +N+ RPDR +WT RR + ++E S S
Sbjct: 391 ---SEKPERRCRNKDRPDRGVWTLRRSDGSYASDESMSSSAS 429
>gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Theobroma cacao]
Length = 514
Score = 63.2 bits (152), Expect = 4e-08
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Frame = -3
Query: 446 ISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFKNQRREPGGRGKGGL 273
I+ A +K L LKG H +TSP + G + K R G +G L
Sbjct: 266 ITDAVKKKVLLLKGKEKEISPVAGNVLHQQNVTSPIKTILGSTPTKQNSRREGRMIRGIL 325
Query: 272 VNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK----------------SFDEAATSDLHAV 141
+NKD +Q+ QS +Q+E Q +T + +D R S D+ +DLH
Sbjct: 326 LNKDARQN-QSSGVQSEQQIRTSNLEKDRRPPRHSHSHLVLKDTNTASDDKVVGNDLHG- 383
Query: 140 PIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQSVIS 15
+EKP+R +N+ RPDR +WT RR + ++E S S
Sbjct: 384 ---SEKPERRCRNKDRPDRGVWTLRRSDGSYASDESMSSSAS 422
>ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852735 [Vitis vinifera]
Length = 322
Score = 60.8 bits (146), Expect = 2e-07
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Frame = -3
Query: 485 GMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQ 309
G L + S S A +K L LKG N +TSP + G + K NQ
Sbjct: 42 GAEALEEESGVSGAVDAGKKKVLLLKGKEREISHHLLQQN--VTSPVKNILGANAPKQNQ 99
Query: 308 RREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK---------------- 180
RRE GR + L+NKD +QS QS Q E Q+Q + ++ R
Sbjct: 100 RREGSGRIIRSILLNKDARQS-QSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGA 158
Query: 179 SFDEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANG 51
D+ +D+H+ ++EK D+ T+N+ RPDR +WT RR++G
Sbjct: 159 QDDKVVGNDVHS--FVSEKQDKRTRNKDRPDRGVWTPLRRSDG 199
>emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 60.8 bits (146), Expect = 2e-07
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Frame = -3
Query: 485 GMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQ 309
G L + S S A +K L LKG N +TSP + G + K NQ
Sbjct: 253 GAEALEEESGVSGAVDAGKKKVLLLKGKEREISHHLLQQN--VTSPVKNILGANAPKQNQ 310
Query: 308 RREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRK---------------- 180
RRE GR + L+NKD +QS QS Q E Q+Q + ++ R
Sbjct: 311 RREGSGRIIRSILLNKDARQS-QSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGA 369
Query: 179 SFDEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANG 51
D+ +D+H+ ++EK D+ T+N+ RPDR +WT RR++G
Sbjct: 370 QDDKVVGNDVHS--FVSEKQDKRTRNKDRPDRGVWTPLRRSDG 410
>emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera]
Length = 304
Score = 59.7 bits (143), Expect = 4e-07
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Frame = -3
Query: 437 AQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGGSMFK-NQRREPGGRG-KGGLVNK 264
A +K L LKG N +TSP + G + K NQRRE GR + L+NK
Sbjct: 14 AGKKKVLLLKGKEREISHHLLQQN--VTSPVKNILGANAPKQNQRREGSGRIIRSILLNK 71
Query: 263 DFQQSPQSLSLQAEHQNQTPYVHRDIRK----------------SFDEAATSDLHAVPII 132
D +QS QS Q E Q+Q + ++ R D+ +D+H+ +
Sbjct: 72 DARQS-QSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGAQDDKVVGNDVHS--FV 128
Query: 131 AEKPDRSTKNRGRPDRPMWTARRRANG 51
+EK D+ T+N+ RPDR +WT RR++G
Sbjct: 129 SEKQDKRTRNKDRPDRGVWTPLRRSDG 155
>ref|XP_006389505.1| hypothetical protein POPTR_0022s00460g [Populus trichocarpa]
gi|550312328|gb|ERP48419.1| hypothetical protein
POPTR_0022s00460g [Populus trichocarpa]
Length = 511
Score = 57.4 bits (137), Expect = 2e-06
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Frame = -3
Query: 494 INAGMGRLTDTSMS----SNISIAQRKPSLSLKGVXXXXXXXXXXSNHPLTSPARGSPGG 327
+ G G T+ S S I+ +K L LKG ++ R
Sbjct: 244 VTLGSGSGTEVSEEETAVSGITGTGKKKILLLKG-----KEKEISLQQSISPSDRNIISS 298
Query: 326 SMFKNQRREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRKSF-------- 174
+ K+QR E GR K L+NKD ++ QS +Q+E Q QT + +D R
Sbjct: 299 TALKSQRHESSGRVIKSILLNKDSRRI-QSSGVQSEPQMQTSNLEKDKRPPRPPHALVLK 357
Query: 173 -------DEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANGFGNEEGFQS 24
D+ +DLH P EK +R T+N+ RPDR +WT RR + ++E S
Sbjct: 358 DANGTPDDKVVGNDLHGFP--NEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSS 412
>ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Populus trichocarpa]
gi|550341819|gb|ERP62848.1| hypothetical protein
POPTR_0004s23450g [Populus trichocarpa]
Length = 520
Score = 57.0 bits (136), Expect = 3e-06
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Frame = -3
Query: 488 AGMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFK 315
+G L D S+ S I+ + +K L LKG + ++S R + K
Sbjct: 251 SGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDRNIISSTALK 310
Query: 314 NQRREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRKSF------------ 174
+QRRE GR + L+NKD + +S + +E Q QT + ++ R
Sbjct: 311 SQRRETSGRMIRSILLNKDSRHI-RSSGVHSEPQMQTSNLEKEKRPPRPPHAQLGLKDAN 369
Query: 173 ----DEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANG-FGNEEGF------- 30
D+ +DLH P EK ++ T+N+ RPDR +WT RR++G + ++E
Sbjct: 370 GTPDDKVVGNDLHGFP--NEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESLLSSASQS 427
Query: 29 -QSVISGTQG 3
QSV +QG
Sbjct: 428 TQSVFDSSQG 437
>ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|566168252|ref|XP_006385052.1| Smg-4/UPF3 family
protein [Populus trichocarpa]
gi|550341820|gb|ERP62849.1| Smg-4/UPF3 family protein
[Populus trichocarpa]
Length = 527
Score = 57.0 bits (136), Expect = 3e-06
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Frame = -3
Query: 488 AGMGRLTDTSMSSNISIAQRKPSLSLKGVXXXXXXXXXXSNHP--LTSPARGSPGGSMFK 315
+G L D S+ S I+ + +K L LKG + ++S R + K
Sbjct: 251 SGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDRNIISSTALK 310
Query: 314 NQRREPGGRG-KGGLVNKDFQQSPQSLSLQAEHQNQTPYVHRDIRKSF------------ 174
+QRRE GR + L+NKD + +S + +E Q QT + ++ R
Sbjct: 311 SQRRETSGRMIRSILLNKDSRHI-RSSGVHSEPQMQTSNLEKEKRPPRPPHAQLGLKDAN 369
Query: 173 ----DEAATSDLHAVPIIAEKPDRSTKNRGRPDRPMWTARRRANG-FGNEEGF------- 30
D+ +DLH P EK ++ T+N+ RPDR +WT RR++G + ++E
Sbjct: 370 GTPDDKVVGNDLHGFP--NEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESLLSSASQS 427
Query: 29 -QSVISGTQG 3
QSV +QG
Sbjct: 428 TQSVFDSSQG 437