BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00029277
         (480 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006398525.1| hypothetical protein EUTSA_v10000833mg [Eutr...    75   1e-11
gb|ESW32528.1| hypothetical protein PHAVU_002G329700g [Phaseolus...    74   2e-11
gb|EOX91189.1| Tetratricopeptide repeat-like superfamily protein...    73   3e-11
ref|XP_006292569.1| hypothetical protein CARUB_v10018804mg [Caps...    72   6e-11
ref|XP_003524343.2| PREDICTED: pentatricopeptide repeat-containi...    71   1e-10
gb|EMJ05523.1| hypothetical protein PRUPE_ppa004294mg [Prunus pe...    71   2e-10
ref|XP_006383251.1| hypothetical protein POPTR_0005s12880g [Popu...    70   2e-10
ref|XP_004503279.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|NP_178248.2| pentatricopeptide repeat-containing protein [Ar...    70   2e-10
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...    70   2e-10
ref|XP_002327707.1| predicted protein [Populus trichocarpa]            70   2e-10
gb|AAD14538.1| predicted by genscan and genefinder [Arabidopsis ...    70   2e-10
ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containi...    70   4e-10
ref|XP_004148464.1| PREDICTED: pentatricopeptide repeat-containi...    70   4e-10
ref|XP_006466716.1| PREDICTED: pentatricopeptide repeat-containi...    69   7e-10
ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arab...    68   1e-09
ref|XP_006425741.1| hypothetical protein CICLE_v10027297mg [Citr...    67   2e-09
ref|XP_006366541.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
ref|XP_004228517.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
emb|CBI17575.3| unnamed protein product [Vitis vinifera]               64   2e-08

>ref|XP_006398525.1| hypothetical protein EUTSA_v10000833mg [Eutrema salsugineum]
           gi|557099614|gb|ESQ39978.1| hypothetical protein
           EUTSA_v10000833mg [Eutrema salsugineum]
          Length = 576

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
 Frame = -3

Query: 304 FLRRPSEIDPLAQNPDLLARKIGIMLYNV---PSWEAARHELEWNYPVSWSPLLVCRVLR 134
           F ++P+       +P +  R I   +YN+    +WE+AR +L  +  V W   ++ RVL+
Sbjct: 39  FFQKPNPAKTQTPDPRVYTRDIVSNIYNILKYSTWESAREQLP-HLGVRWDSHIINRVLK 97

Query: 133 THPPPDVALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
            HPP   A  FFNW +    F H+  TYT+M+D+ G+AGRI+ M
Sbjct: 98  AHPPMQKAWLFFNWASEIKGFKHDHFTYTTMLDIFGEAGRIQSM 141


>gb|ESW32528.1| hypothetical protein PHAVU_002G329700g [Phaseolus vulgaris]
          Length = 600

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 36/109 (33%), Positives = 61/109 (55%)
 Frame = -3

Query: 328 RQDEGKSLFLRRPSEIDPLAQNPDLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLV 149
           ++ +   L L+   + +P     +++ +   ++ Y+  +WE A  EL  N P+ W    V
Sbjct: 61  KKHKNLKLKLKEKKKDEPRVYTRNVIGKIYNMLKYS--TWETAESELN-NLPLKWDSYTV 117

Query: 148 CRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
            RVL++HPP + A  FFNW +    F H+  TYT+M+D+ G+AGR+  M
Sbjct: 118 NRVLKSHPPMEKAWLFFNWASGLRGFKHDQYTYTTMLDIFGEAGRVSSM 166


>gb|EOX91189.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
          Length = 577

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 35/98 (35%), Positives = 57/98 (58%)
 Frame = -3

Query: 295 RPSEIDPLAQNPDLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPD 116
           +P E++P     D ++    I+ Y+  +W+AA  +L+    + W    + +VL+THPP +
Sbjct: 49  KPLEVEPKVYMRDTISNIYKILKYS--TWDAAETQLK-RLRIKWDSFTINQVLKTHPPME 105

Query: 115 VALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
            A  FFNWV     F H+  TYT+M+D+ G+AGR+  M
Sbjct: 106 KAWLFFNWVGKVKGFKHDQFTYTTMLDIFGEAGRVSSM 143


>ref|XP_006292569.1| hypothetical protein CARUB_v10018804mg [Capsella rubella]
           gi|482561276|gb|EOA25467.1| hypothetical protein
           CARUB_v10018804mg [Capsella rubella]
          Length = 662

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 38/104 (36%), Positives = 58/104 (55%)
 Frame = -3

Query: 313 KSLFLRRPSEIDPLAQNPDLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLR 134
           K    +  S  DP     D+++    I+ Y+  +WE+AR +L  +  V W   ++ RVL+
Sbjct: 127 KPKLAKTESPDDPRVYTRDIVSNIYNILKYS--TWESAREQLP-HLRVRWDSHIINRVLK 183

Query: 133 THPPPDVALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
            HPP   A  FFNW +    F H+  TYT+M+D+ G+AGRI+ M
Sbjct: 184 AHPPMQKAWLFFNWASQIKGFKHDHFTYTTMLDIFGEAGRIQSM 227


>ref|XP_003524343.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 591

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
 Frame = -3

Query: 274 LAQNPDLLARKIGIMLYNV---PSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALC 104
           L   P    R +   +YN+    SWE+A  +L  N  + W    V +VL++HPP + A  
Sbjct: 63  LKDEPREYMRNVIGKIYNMLKYSSWESAEQDLN-NLSMKWDSYTVNQVLKSHPPMEKAWL 121

Query: 103 FFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
           FFNWV+S   F H+  TYT+M+D+ G+AGR+  M
Sbjct: 122 FFNWVSSLRGFKHDHYTYTTMLDIFGEAGRVSSM 155


>gb|EMJ05523.1| hypothetical protein PRUPE_ppa004294mg [Prunus persica]
          Length = 518

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 31/71 (43%), Positives = 47/71 (66%)
 Frame = -3

Query: 214 SWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMID 35
           +W++A+ +L+   P+ W    V +VL+THPP + A  FFNWVA    F H+  TYT+M+D
Sbjct: 16  TWDSAQDQLQ-RLPIRWDSYTVSQVLKTHPPMEKAWLFFNWVAGIRGFKHDHFTYTTMLD 74

Query: 34  LLGKAGRIEDM 2
           + G+AGR+  M
Sbjct: 75  IFGEAGRVSSM 85


>ref|XP_006383251.1| hypothetical protein POPTR_0005s12880g [Populus trichocarpa]
           gi|550338833|gb|ERP61048.1| hypothetical protein
           POPTR_0005s12880g [Populus trichocarpa]
          Length = 517

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 33/86 (38%), Positives = 53/86 (61%)
 Frame = -3

Query: 259 DLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASR 80
           D+++    I+ Y+  +W++A+ EL     + W    V ++L+THPP + A  FFNW +  
Sbjct: 3   DIISNIYKILKYS--TWDSAQEELT-KLNIKWDSFTVNQILKTHPPMEKAWLFFNWASKL 59

Query: 79  PHFWHNSRTYTSMIDLLGKAGRIEDM 2
             F H+  TYT+M+D+ G+AGRIE M
Sbjct: 60  KRFKHDQFTYTTMLDIFGEAGRIESM 85


>ref|XP_004503279.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Cicer arietinum]
          Length = 580

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 31/71 (43%), Positives = 46/71 (64%)
 Frame = -3

Query: 214 SWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMID 35
           SW++A  ELE N P+ W    V ++L++HPP + A  FFNW +    F H+  TYT+M++
Sbjct: 77  SWDSAERELE-NLPLKWDSYTVNQILKSHPPMEKAWLFFNWASRLKGFKHDQYTYTTMLN 135

Query: 34  LLGKAGRIEDM 2
           + G+AGRI  M
Sbjct: 136 IFGEAGRISSM 146


>ref|NP_178248.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546783|sp|Q9ZU29.2|PP139_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01390 gi|330250351|gb|AEC05445.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 35/93 (37%), Positives = 55/93 (59%)
 Frame = -3

Query: 280 DPLAQNPDLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCF 101
           DP     D+++    I+ Y+  +W++A+ +L  +  V W   ++ RVL+ HPP   A  F
Sbjct: 52  DPSVYTRDIVSNIYNILKYS--NWDSAQEQLP-HLGVRWDSHIINRVLKAHPPMQKAWLF 108

Query: 100 FNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
           FNW A    F H+  TYT+M+D+ G+AGRI+ M
Sbjct: 109 FNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSM 141


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355525131|gb|AET05585.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 687

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 31/71 (43%), Positives = 47/71 (66%)
 Frame = -3

Query: 214 SWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMID 35
           SW++A+ +L+ N P+ W    V +VL++HPP + A  FFNW +    F H+  TYT+M+D
Sbjct: 183 SWDSAQQQLQ-NLPLKWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLD 241

Query: 34  LLGKAGRIEDM 2
           + G+AGRI  M
Sbjct: 242 IFGEAGRISSM 252


>ref|XP_002327707.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 33/86 (38%), Positives = 53/86 (61%)
 Frame = -3

Query: 259 DLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASR 80
           D+++    I+ Y+  +W++A+ EL     + W    V ++L+THPP + A  FFNW +  
Sbjct: 42  DIISNIYKILKYS--TWDSAQEELT-KLNIKWDSFTVNQILKTHPPMEKAWLFFNWASKL 98

Query: 79  PHFWHNSRTYTSMIDLLGKAGRIEDM 2
             F H+  TYT+M+D+ G+AGRIE M
Sbjct: 99  KRFKHDQFTYTTMLDIFGEAGRIESM 124


>gb|AAD14538.1| predicted by genscan and genefinder [Arabidopsis thaliana]
          Length = 248

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 35/93 (37%), Positives = 55/93 (59%)
 Frame = -3

Query: 280 DPLAQNPDLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCF 101
           DP     D+++    I+ Y+  +W++A+ +L  +  V W   ++ RVL+ HPP   A  F
Sbjct: 52  DPSVYTRDIVSNIYNILKYS--NWDSAQEQLP-HLGVRWDSHIINRVLKAHPPMQKAWLF 108

Query: 100 FNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
           FNW A    F H+  TYT+M+D+ G+AGRI+ M
Sbjct: 109 FNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSM 141


>ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Cucumis sativus]
          Length = 737

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
 Frame = -3

Query: 331 HRQDEGKSLFLRRPSEIDPLAQNPDLL--------ARKIGIMLYNVPSWEAARHELEWNY 176
           +++D+  S F R+  +   +A+  +++         R I  +L N  SW +A+  LE   
Sbjct: 105 YKRDKPISRFSRQSRKGTKVAKKEEVIPRLYTRDTVRNICNILRNC-SWASAQKHLEM-L 162

Query: 175 PVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
           P+ W   L+ +VL+THPP +    FFNW ++   F H+  TYT+M+D+ G+AGRI  M
Sbjct: 163 PIRWDSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSM 220


>ref|XP_004148464.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Cucumis sativus]
          Length = 1058

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
 Frame = -3

Query: 331 HRQDEGKSLFLRRPSEIDPLAQNPDLL--------ARKIGIMLYNVPSWEAARHELEWNY 176
           +++D+  S F R+  +   +A+  +++         R I  +L N  SW +A+  LE   
Sbjct: 86  YKRDKPISRFSRQSRKGTKVAKKEEVIPRLYTRDTVRNICNILRNC-SWASAQKHLEM-L 143

Query: 175 PVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
           P+ W   L+ +VL+THPP +    FFNW ++   F H+  TYT+M+D+ G+AGRI  M
Sbjct: 144 PIRWDSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSM 201


>ref|XP_006466716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Citrus sinensis]
          Length = 582

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 36/92 (39%), Positives = 55/92 (59%)
 Frame = -3

Query: 277 PLAQNPDLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFF 98
           P A   D ++    I+ Y+  +W++A+  L+ N P+ W    V +VL+THPP + A  FF
Sbjct: 60  PKAYMRDTISNVYKILKYS--TWDSAQDLLK-NLPIKWDSYTVNQVLKTHPPMEKAWLFF 116

Query: 97  NWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
           NWV+    F H+  TYT+M+D+ G+A RI  M
Sbjct: 117 NWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 148


>ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp.
           lyrata] gi|297320908|gb|EFH51329.1| hypothetical protein
           ARALYDRAFT_322482 [Arabidopsis lyrata subsp. lyrata]
          Length = 582

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
 Frame = -3

Query: 328 RQDEGKSLFLRRPSEIDPLAQNPDL--LARKIGIMLYNV---PSWEAARHELEWNYPVSW 164
           R       F ++P  +   +  PDL    R I   +YN+    +WE+A+ +L  +  V W
Sbjct: 34  RNPTNSKRFFQKPKLVKTQSP-PDLKVYTRDIVSNIYNILKYSTWESAQEQLP-HLGVRW 91

Query: 163 SPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMIDLLGKAGRIEDM 2
              ++ RVL+ HPP   A  FFNW +    F H+  TYT+M+D+ G+AGRI+ M
Sbjct: 92  DSHVINRVLKAHPPMQKAWLFFNWASQIKGFKHDHFTYTTMLDIFGEAGRIQSM 145


>ref|XP_006425741.1| hypothetical protein CICLE_v10027297mg [Citrus clementina]
           gi|557527731|gb|ESR38981.1| hypothetical protein
           CICLE_v10027297mg [Citrus clementina]
          Length = 522

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 34/86 (39%), Positives = 53/86 (61%)
 Frame = -3

Query: 259 DLLARKIGIMLYNVPSWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASR 80
           D ++    I+ Y+  +W++A+  L+ N P+ W    V +VL+THPP + A  FFNWV+  
Sbjct: 3   DTISNVYKILKYS--TWDSAQDLLK-NLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRS 59

Query: 79  PHFWHNSRTYTSMIDLLGKAGRIEDM 2
             F H+  TYT+M+D+ G+A RI  M
Sbjct: 60  RGFNHDRFTYTTMLDIFGEAKRISSM 85


>ref|XP_006366541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like isoform X1 [Solanum tuberosum]
           gi|565402130|ref|XP_006366542.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g01390-like isoform X2 [Solanum tuberosum]
          Length = 591

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 29/71 (40%), Positives = 45/71 (63%)
 Frame = -3

Query: 214 SWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMID 35
           +W++A+ +L    P+ W    V +VL+THPP + A  FF+W +    F H+  TYT+M+D
Sbjct: 89  TWDSAQEQL-MELPIKWDSYTVNQVLKTHPPMEKAWLFFSWASKLKGFKHDQFTYTTMLD 147

Query: 34  LLGKAGRIEDM 2
           + G+AGRI  M
Sbjct: 148 IFGEAGRISSM 158


>ref|XP_004228517.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Solanum lycopersicum]
          Length = 591

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 29/71 (40%), Positives = 45/71 (63%)
 Frame = -3

Query: 214 SWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMID 35
           +W++A+ +L    P+ W    V +VL+THPP + A  FF+W +    F H+  TYT+M+D
Sbjct: 89  TWDSAQEQL-MELPIKWDSYTVNQVLKTHPPMEKAWLFFSWASKLKGFKHDQFTYTTMLD 147

Query: 34  LLGKAGRIEDM 2
           + G+AGRI  M
Sbjct: 148 IFGEAGRISSM 158


>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 29/71 (40%), Positives = 45/71 (63%)
 Frame = -3

Query: 214 SWEAARHELEWNYPVSWSPLLVCRVLRTHPPPDVALCFFNWVASRPHFWHNSRTYTSMID 35
           +W++A+ +LE    + W    V +VL++HPP + A  FFNW +    F H+  TYT+M+D
Sbjct: 142 TWDSAQEQLE-KLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLD 200

Query: 34  LLGKAGRIEDM 2
           + G+A RIE M
Sbjct: 201 IFGEARRIESM 211