BLASTX nr result
ID: Ephedra25_contig00029165
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00029165
(416 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT26579.1| hypothetical protein F775_06134 [Aegilops tauschii] 94 2e-17
ref|XP_006663835.1| PREDICTED: pentatricopeptide repeat-containi... 92 5e-17
ref|XP_004301943.1| PREDICTED: pentatricopeptide repeat-containi... 92 5e-17
ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group] g... 92 7e-17
gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japo... 92 7e-17
ref|XP_002308737.1| pentatricopeptide repeat-containing family p... 90 3e-16
ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containi... 90 4e-16
ref|XP_002307403.1| pentatricopeptide repeat-containing family p... 90 4e-16
ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [S... 89 5e-16
tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea m... 89 5e-16
gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea ... 89 5e-16
ref|XP_003612353.1| Pentatricopeptide repeat-containing protein ... 89 6e-16
gb|AFW62799.1| putative pentatricopeptide repeat family protein ... 89 8e-16
ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [S... 89 8e-16
gb|EMT20741.1| hypothetical protein F775_07206 [Aegilops tauschii] 88 1e-15
ref|XP_006663280.1| PREDICTED: pentatricopeptide repeat-containi... 87 2e-15
gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japo... 87 2e-15
ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group] g... 87 2e-15
ref|XP_006472673.1| PREDICTED: pentatricopeptide repeat-containi... 87 2e-15
ref|XP_006434069.1| hypothetical protein CICLE_v10003712mg [Citr... 87 2e-15
>gb|EMT26579.1| hypothetical protein F775_06134 [Aegilops tauschii]
Length = 575
Score = 94.0 bits (232), Expect = 2e-17
Identities = 51/138 (36%), Positives = 77/138 (55%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN MI+ Y+ + + + A+K+ M +E K+ LS + ACA A+ E
Sbjct: 69 SWNTMIAGYTQSGED-VEALKLFQRMQREGRQL------TKFTLSSTICACAAKYAINEC 121
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H + +K ++ V A+L++YAKC I+DA VF+KM K L WS + AG N
Sbjct: 122 KQLHAIAIKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPDKTLVTWSSLFAGYVQN 181
Query: 361 GRYDEAFCLFRDSIGERV 414
G ++EA CLFR++ E V
Sbjct: 182 GLHEEALCLFRNAQREGV 199
Score = 63.2 bits (152), Expect = 4e-08
Identities = 30/90 (33%), Positives = 53/90 (58%)
Frame = +1
Query: 121 KYILSGLLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFD 300
++ LS ++ ACA EG Q+H +++KC V +L+++YA+C +IE++ +F
Sbjct: 203 EFTLSAIISACASLALKIEGTQLHAVIVKCGFHGNFFVAASLVDVYARCGQIENSYALFA 262
Query: 301 KMQGKVLDCWSMMVAGLSHNGRYDEAFCLF 390
M+ K + W+ M+AG S + R E+ LF
Sbjct: 263 YMEQKNVVIWNAMIAGFSRHARSWESMILF 292
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/90 (34%), Positives = 50/90 (55%)
Frame = +1
Query: 124 YILSGLLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDK 303
+ L LL+ CAK R++ G HGL + T+ + L+N+Y KC + + A+ VFD
Sbjct: 2 FALHELLQLCAKRRSLLVGKSCHGLAIHFGMVTDTVTCNILINLYTKCGRNDCARHVFDA 61
Query: 304 MQGKVLDCWSMMVAGLSHNGRYDEAFCLFR 393
M + + W+ M+AG + +G EA LF+
Sbjct: 62 MITRSIVSWNTMIAGYTQSGEDVEALKLFQ 91
>ref|XP_006663835.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Oryza brachyantha]
Length = 630
Score = 92.4 bits (228), Expect = 5e-17
Identities = 50/133 (37%), Positives = 75/133 (56%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN MI+ Y+H + + A+K+ S M +E G K+ LS L ACA A+ E
Sbjct: 124 SWNTMIAGYTHNRED-VEALKLFSRMHRE------GTQMTKFTLSSTLCACAAKYAIIEC 176
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H + +K ++ V A+L++YAKC I+DA +F++M K WS + AG N
Sbjct: 177 KQLHTIAIKLALDSSSFVGTAVLDVYAKCNMIKDACSIFERMPEKTSVTWSSLFAGYVQN 236
Query: 361 GRYDEAFCLFRDS 399
G ++EA CLFR +
Sbjct: 237 GLHEEALCLFRSA 249
Score = 61.2 bits (147), Expect = 1e-07
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +1
Query: 130 LSGLLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQ 309
L LL+ C K+R++ G HGL + T+ + L+N+Y KC + + A++VFD M
Sbjct: 59 LHNLLQLCVKSRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMS 118
Query: 310 GKVLDCWSMMVAGLSHNGRYDEAFCLF 390
+ + W+ M+AG +HN EA LF
Sbjct: 119 VRSIVSWNTMIAGYTHNREDVEALKLF 145
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/95 (30%), Positives = 52/95 (54%)
Frame = +1
Query: 106 GFVPNKYILSGLLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDA 285
G ++ +S +L CA + EG Q+H +++K + V +L+++YA+C +IE +
Sbjct: 253 GIQLTEFTVSSILSTCASLALIIEGTQVHAVIVKSGFHSNLFVATSLVDVYARCGQIERS 312
Query: 286 QQVFDKMQGKVLDCWSMMVAGLSHNGRYDEAFCLF 390
+VF M+ K + W+ M+A S + EA LF
Sbjct: 313 YEVFADMEQKNVVLWNAMIASFSRHAHSWEAMILF 347
>ref|XP_004301943.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Fragaria vesca subsp. vesca]
Length = 583
Score = 92.4 bits (228), Expect = 5e-17
Identities = 46/130 (35%), Positives = 80/130 (61%)
Frame = +1
Query: 4 WNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEGM 183
W MI+A S + + A + ++ML + GF PN++ + G+L+AC + + + G
Sbjct: 216 WTTMITACSQ-QGRGMEAFSLFAQMLSD------GFSPNEFTVCGVLKACGEEKELRFGR 268
Query: 184 QIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNG 363
Q+HG ++K + +++ V AL++MYAKC +IED++ VFD M+ + W+ ++AG + G
Sbjct: 269 QLHGAIVKKIYKSDIFVATALVDMYAKCGEIEDSRYVFDGMRNRNTVTWTSIIAGYARKG 328
Query: 364 RYDEAFCLFR 393
+EA CLFR
Sbjct: 329 LSEEAICLFR 338
Score = 76.6 bits (187), Expect = 3e-12
Identities = 43/129 (33%), Positives = 64/129 (49%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW +IS +H ++ A++++ EM+++ G PN + S L+ACA V G
Sbjct: 417 SWTAIISGCAHLGHES-EAIELLKEMMED------GVEPNAFTYSSALKACANLETVLHG 469
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+H K + V AL+ MYAKC + +A QVFD M + L W M+ G + N
Sbjct: 470 QLVHSSANKSPAMSNVYVGSALIYMYAKCGYVTEASQVFDSMPERNLVSWKAMIVGYARN 529
Query: 361 GRYDEAFCL 387
G EA L
Sbjct: 530 GHCQEALKL 538
Score = 60.1 bits (144), Expect = 3e-07
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +1
Query: 1 SWNVMISAYSH--TDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVT 174
SW +++ Y + DD+ A+ + SE + E G PN + +L C K
Sbjct: 115 SWTAIVNGYLNFGLDDE---ALGLFSEAVDE------GIQPNGNMFVCVLNLCCKRLDYE 165
Query: 175 EGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLS 354
G Q+H ++K G + IV ++ +YA+C + A + FD+M + CW+ M+ S
Sbjct: 166 LGRQVHAGVVKG-GWSNMIVDSTIVKLYAQCGEFSSAFRAFDQMPKLDVICWTTMITACS 224
Query: 355 HNGRYDEAFCLFRDSIGE 408
GR EAF LF + +
Sbjct: 225 QQGRGMEAFSLFAQMLSD 242
>ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|47848643|dbj|BAD22491.1| pentatricopeptide
(PPR) repeat-containing protein-like [Oryza sativa
Japonica Group] gi|113630915|dbj|BAF24596.1|
Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 877
Score = 92.0 bits (227), Expect = 7e-17
Identities = 48/130 (36%), Positives = 78/130 (60%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN +IS + A++++ +M G VPN ++LS +L+ACA A A G
Sbjct: 270 SWNALISGCV-LNGHDHRAIELLLQMKSS------GLVPNVFMLSSILKACAGAGAFDLG 322
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
QIHG ++K ++++ + L++MYAK ++DA +VFD M + L W+ +++G SH
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382
Query: 361 GRYDEAFCLF 390
GR+DEAF +F
Sbjct: 383 GRHDEAFSIF 392
Score = 76.6 bits (187), Expect = 3e-12
Identities = 46/134 (34%), Positives = 69/134 (51%)
Frame = +1
Query: 13 MISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEGMQIH 192
MI+A S D A+K+ EML++ G P+ ++LS LL ACA A +G Q+H
Sbjct: 476 MITALSQCDHGE-GAIKLFMEMLRK------GLEPDPFVLSSLLNACASLSAYEQGKQVH 528
Query: 193 GLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNGRYD 372
L+K ++ AL+ YAKC IEDA+ F + + + WS M+ GL+ +G
Sbjct: 529 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 588
Query: 373 EAFCLFRDSIGERV 414
A LF + E +
Sbjct: 589 RALELFGRMVDEGI 602
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/121 (27%), Positives = 66/121 (54%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN ++SAY +D+ +A+++ EM+ G P ++ S ++ AC +R + G
Sbjct: 169 SWNGLMSAYVK-NDQCGDAIQVFGEMVWS------GIQPTEFGFSCVVNACTGSRNIDAG 221
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H ++++ E + AL++MY K +++ A +F+KM + W+ +++G N
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281
Query: 361 G 363
G
Sbjct: 282 G 282
>gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 92.0 bits (227), Expect = 7e-17
Identities = 48/130 (36%), Positives = 78/130 (60%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN +IS + A++++ +M G VPN ++LS +L+ACA A A G
Sbjct: 177 SWNALISGCV-LNGHDHRAIELLLQMKSS------GLVPNVFMLSSILKACAGAGAFDLG 229
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
QIHG ++K ++++ + L++MYAK ++DA +VFD M + L W+ +++G SH
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 289
Query: 361 GRYDEAFCLF 390
GR+DEAF +F
Sbjct: 290 GRHDEAFSIF 299
Score = 76.6 bits (187), Expect = 3e-12
Identities = 46/134 (34%), Positives = 69/134 (51%)
Frame = +1
Query: 13 MISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEGMQIH 192
MI+A S D A+K+ EML++ G P+ ++LS LL ACA A +G Q+H
Sbjct: 383 MITALSQCDHGE-GAIKLFMEMLRK------GLEPDPFVLSSLLNACASLSAYEQGKQVH 435
Query: 193 GLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNGRYD 372
L+K ++ AL+ YAKC IEDA+ F + + + WS M+ GL+ +G
Sbjct: 436 AHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGK 495
Query: 373 EAFCLFRDSIGERV 414
A LF + E +
Sbjct: 496 RALELFGRMVDEGI 509
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/121 (27%), Positives = 66/121 (54%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN ++SAY +D+ +A+++ EM+ G P ++ S ++ AC +R + G
Sbjct: 76 SWNGLMSAYVK-NDQCGDAIQVFGEMVWS------GIQPTEFGFSCVVNACTGSRNIDAG 128
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H ++++ E + AL++MY K +++ A +F+KM + W+ +++G N
Sbjct: 129 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 188
Query: 361 G 363
G
Sbjct: 189 G 189
>ref|XP_002308737.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222854713|gb|EEE92260.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 590
Score = 90.1 bits (222), Expect = 3e-16
Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARA--VT 174
+W +I+ YS D+ +A+ ++ EML+ +G PN++ L+ LL+A + + V
Sbjct: 83 TWTALITGYSQ-HDRPQDALLLLPEMLR------IGLKPNQFTLASLLKAASGVGSTDVL 135
Query: 175 EGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLS 354
+G Q+HGL L+ ++ V A+L+MYA+C +E+AQ +FD M K W+ ++AG +
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYA 195
Query: 355 HNGRYDEAFCLFRDSIGERV 414
G+ D+AFCLF + + E V
Sbjct: 196 RKGQGDKAFCLFSNMLRENV 215
Score = 71.2 bits (173), Expect = 1e-10
Identities = 43/138 (31%), Positives = 70/138 (50%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN +I+ Y+ A + S ML+EN P + S +L ACA ++ +G
Sbjct: 186 SWNALIAGYARKGQGD-KAFCLFSNMLRENVK------PTHFTYSSVLCACASMGSLEQG 238
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+H L++K + V LL+MYAK IEDA++VFD++ + + W+ M+ G S +
Sbjct: 239 KWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQH 298
Query: 361 GRYDEAFCLFRDSIGERV 414
G A F + + R+
Sbjct: 299 GLGKVALQRFEEMLRTRI 316
Score = 58.9 bits (141), Expect = 7e-07
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = +1
Query: 139 LLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKV 318
LL+ C + EG IH LLL + ++Q LLN+YAKC + A+++FD+M +
Sbjct: 21 LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80
Query: 319 LDCWSMMVAGLSHNGRYDEAFCLFRDSI 402
+ W+ ++ G S + R +A L + +
Sbjct: 81 VVTWTALITGYSQHDRPQDALLLLPEML 108
>ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 89.7 bits (221), Expect = 4e-16
Identities = 49/131 (37%), Positives = 76/131 (58%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN MI+ Y+H+ + + A+K+ S M +E + +++ LS + ACA A+ E
Sbjct: 125 SWNTMIAGYTHSGED-VQALKLFSRMHREGTHM------SEFTLSSTICACAAKYAINEC 177
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H + LK ++ V A+L++YAKC I+DA VF+KM + L WS + AG N
Sbjct: 178 KQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQN 237
Query: 361 GRYDEAFCLFR 393
G ++EA LFR
Sbjct: 238 GLHEEALHLFR 248
Score = 63.2 bits (152), Expect = 4e-08
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 121 KYILSGLLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFD 300
++ LS +L ACA EG+Q+H ++LKC V +L+++YA+C +IE A +F
Sbjct: 259 EFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFA 318
Query: 301 KMQGKVLDCWSMMVAGLSHNGRYDEAFCLF 390
M+ K + W+ M+A S + EA LF
Sbjct: 319 YMEHKNVVIWNAMIASFSRHAHSWEAMILF 348
Score = 57.0 bits (136), Expect = 3e-06
Identities = 29/87 (33%), Positives = 49/87 (56%)
Frame = +1
Query: 130 LSGLLRACAKARAVTEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQ 309
+S L+ CAK +++ G HGL + T+ + L+N+Y KC + + A+ VFD M
Sbjct: 60 ISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMH 119
Query: 310 GKVLDCWSMMVAGLSHNGRYDEAFCLF 390
+ + W+ M+AG +H+G +A LF
Sbjct: 120 VRSIVSWNTMIAGYTHSGEDVQALKLF 146
>ref|XP_002307403.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222856852|gb|EEE94399.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 472
Score = 89.7 bits (221), Expect = 4e-16
Identities = 49/138 (35%), Positives = 81/138 (58%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW MI+A S + A M ++ML GF+PN + SG+L+AC + +A+ G
Sbjct: 108 SWTTMITACSQ-QGRCGEAFGMFTQMLNG------GFLPNGFTASGILKACGEEKALKFG 160
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
QIHG ++K + + + V +L++MYAKC ++ D+ +VF+ M+ + W+ ++AG +
Sbjct: 161 KQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTSIIAGYARK 220
Query: 361 GRYDEAFCLFRDSIGERV 414
G +EA CLFR + RV
Sbjct: 221 GLGEEAICLFRLMMRRRV 238
Score = 72.4 bits (176), Expect = 6e-11
Identities = 43/129 (33%), Positives = 64/129 (49%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW +IS ++ ++ A++ + EM++E G PN + S L+ACA V +G
Sbjct: 310 SWTAIISGHACLGHES-EALEFLKEMMEE------GVEPNSFTYSSALKACANLETVLQG 362
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
IH K + V AL++MYA+C + +A QVFD M + L W M+ G N
Sbjct: 363 KLIHSSANKTPASSNVFVGSALIHMYARCGYVSEAIQVFDSMPERNLVTWRAMIMGYVRN 422
Query: 361 GRYDEAFCL 387
G EA L
Sbjct: 423 GLCQEALKL 431
Score = 55.1 bits (131), Expect = 1e-05
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Frame = +1
Query: 1 SWNVMISAYSH--TDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVT 174
SW MI+ Y DD+ A+ S+ +K+ G VPN +L C++
Sbjct: 8 SWTAMINGYFKFGLDDE---ALSYFSQAIKD------GVVPNSKTFVCVLNLCSRRLDFE 58
Query: 175 EGMQIHGLLLKCLGETEE-IVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGL 351
G Q+H ++K G IV A++ Y +C ++ A VFD+M + + W+ M+
Sbjct: 59 LGRQVHARVVK--GNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMITAC 116
Query: 352 SHNGRYDEAFCLF 390
S GR EAF +F
Sbjct: 117 SQQGRCGEAFGMF 129
>ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein
SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 89.4 bits (220), Expect = 5e-16
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Frame = +1
Query: 1 SWNVMISAY---SHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAV 171
SW MI+AY H D KMVSE GF PN++ + L+ACA+ +A+
Sbjct: 79 SWTTMITAYVQHGHGDKALQMFPKMVSE----------GFRPNEFTVCSALKACAEEKAL 128
Query: 172 TEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGL 351
G Q+HG ++K L + + V AL+ MYA+C ++ DAQ VFDKM + W+ M++G
Sbjct: 129 RFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTITWTSMISGY 188
Query: 352 SHNGRYDEAFCLFRDSIGERV 414
+ +G +EA LFR RV
Sbjct: 189 AQSGCGEEAVLLFRKMKMRRV 209
Score = 81.3 bits (199), Expect = 1e-13
Identities = 43/126 (34%), Positives = 71/126 (56%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
+W MIS Y++ + A+K + EML + G PN Y S L+ACA+ A+ +G
Sbjct: 281 AWTAMISGYNNLGHN-VEALKSLDEMLWD------GVAPNTYTYSSALKACARLEALRDG 333
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+IHG++ K + V +L++MY +C K+++A++VFD M L W +M+ G + N
Sbjct: 334 RRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQN 393
Query: 361 GRYDEA 378
+EA
Sbjct: 394 CLCEEA 399
>tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 89.4 bits (220), Expect = 5e-16
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Frame = +1
Query: 1 SWNVMISAY---SHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAV 171
SW MI+AY H+D A++M M+ E GF PN++ + L+ACA+ +A+
Sbjct: 8 SWTTMITAYVQHGHSD----KALQMFPTMVSE------GFRPNEFTVCSALKACAEEKAL 57
Query: 172 TEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGL 351
G Q+HG ++K L + + V AL+ MYA+C ++ DAQ VFDKM + W+ M++G
Sbjct: 58 RFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGY 117
Query: 352 SHNGRYDEAFCLFRDSIGERV 414
+ +G +EA LFR RV
Sbjct: 118 AQSGCGEEAVLLFRKMKMRRV 138
Score = 89.0 bits (219), Expect = 6e-16
Identities = 46/126 (36%), Positives = 74/126 (58%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
+W MIS Y++ + A+K + EML + G VPN Y S L+ACA+ A+ +G
Sbjct: 210 AWTAMISGYNNLGHN-VEALKSLDEMLWD------GVVPNTYTYSSALKACARLEALQDG 262
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+IHG++ K + V +L++MY +C K+++A++VFD M L W +M+ G + N
Sbjct: 263 RRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQN 322
Query: 361 GRYDEA 378
GR +EA
Sbjct: 323 GRSEEA 328
>gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide
repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 89.4 bits (220), Expect = 5e-16
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Frame = +1
Query: 1 SWNVMISAY---SHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAV 171
SW MI+AY H+D A++M M+ E GF PN++ + L+ACA+ +A+
Sbjct: 257 SWTTMITAYVQHGHSD----KALQMFPTMVSE------GFRPNEFTVCSALKACAEEKAL 306
Query: 172 TEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGL 351
G Q+HG ++K L + + V AL+ MYA+C ++ DAQ VFDKM + W+ M++G
Sbjct: 307 RFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGY 366
Query: 352 SHNGRYDEAFCLFRDSIGERV 414
+ +G +EA LFR RV
Sbjct: 367 AQSGCGEEAVLLFRKMKMRRV 387
Score = 89.0 bits (219), Expect = 6e-16
Identities = 46/126 (36%), Positives = 74/126 (58%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
+W MIS Y++ + A+K + EML + G VPN Y S L+ACA+ A+ +G
Sbjct: 459 AWTAMISGYNNLGHN-VEALKSLDEMLWD------GVVPNTYTYSSALKACARLEALQDG 511
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+IHG++ K + V +L++MY +C K+++A++VFD M L W +M+ G + N
Sbjct: 512 RRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQN 571
Query: 361 GRYDEA 378
GR +EA
Sbjct: 572 GRSEEA 577
>ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513688|gb|AES95311.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 795
Score = 89.0 bits (219), Expect = 6e-16
Identities = 47/138 (34%), Positives = 80/138 (57%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
+WNVMIS ++ D + ++ SEM +E G P++ + LL+ C+ + E
Sbjct: 218 AWNVMISGFAQNGDFRM-VQRLFSEMWEEQ-----GLKPDRITFASLLKCCS---VLNEV 268
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
MQIHG++ K E + +V+ A++++YAKCR + +++FD M+ K WS M++G + N
Sbjct: 269 MQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMISGYTMN 328
Query: 361 GRYDEAFCLFRDSIGERV 414
R +EA F+D +RV
Sbjct: 329 NRGEEAVNFFKDMCRQRV 346
Score = 60.8 bits (146), Expect = 2e-07
Identities = 31/121 (25%), Positives = 65/121 (53%)
Frame = +1
Query: 4 WNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEGM 183
W+ MIS Y+ +++ AV +M ++ + +++LS L+AC + + G+
Sbjct: 318 WSSMISGYT-MNNRGEEAVNFFKDMCRQRVKLD------QHVLSSTLKACVEIEDLNTGV 370
Query: 184 QIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNG 363
Q+HGL++K + + V LLN+YA ++ D +++F ++ K + W+ M+ + G
Sbjct: 371 QVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILAQARPG 430
Query: 364 R 366
+
Sbjct: 431 Q 431
Score = 58.2 bits (139), Expect = 1e-06
Identities = 32/126 (25%), Positives = 67/126 (53%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW+ +I ++ A+++ EML E N+ Y L + AC++ ++EG
Sbjct: 521 SWSSIIGTCKQNRMES-KALELCKEMLDEGINF------TSYSLPLCISACSQLLTISEG 573
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H +K + + ++++MYAKC IE++++VFD+ ++ +++G +H+
Sbjct: 574 KQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVFDEQLKPNEVTFNAIISGYAHH 633
Query: 361 GRYDEA 378
G+ +A
Sbjct: 634 GKAQQA 639
Score = 57.4 bits (137), Expect = 2e-06
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTIN-AVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTE 177
+W +IS SH +++ A +M + M + PN+ + LLRAC +
Sbjct: 116 TWTTLIS--SHLKYGSVSKAFEMFNHMRVSDER------PNENTFAVLLRACTNRELWSV 167
Query: 178 GMQIHGLLLKCLGETEEIVQGALLNMYAK-CRKIEDAQQVFDKMQGKVLDCWSMMVAGLS 354
G+QIHGLL++C E E+ +L+ MY K + DA +VF + + + W++M++G +
Sbjct: 168 GLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFA 227
Query: 355 HNGRYDEAFCLFRD 396
NG + LF +
Sbjct: 228 QNGDFRMVQRLFSE 241
>gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 88.6 bits (218), Expect = 8e-16
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Frame = +1
Query: 1 SWNVMISA-YSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTE 177
SWN IS +H D A++++ +M G VPN + LS +L+ACA A A
Sbjct: 273 SWNAFISGCVTHGHDH--RALELLLQMKSS------GLVPNVFTLSSVLKACAGAGAFNL 324
Query: 178 GMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSH 357
G QIHG ++K + + +E V L++MYAK ++DA++VFD M + L W+ +++G SH
Sbjct: 325 GRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSH 384
Query: 358 NGRYDEAFCLF 390
+GR+ E LF
Sbjct: 385 DGRHGEVLSLF 395
Score = 74.3 bits (181), Expect = 2e-11
Identities = 45/138 (32%), Positives = 69/138 (50%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
S M++A S D +A+K+ +ML++ G P+ ++LS LL AC A +G
Sbjct: 477 SSTTMMTALSQCDHGE-DAIKLFVQMLRK------GLEPDSFVLSSLLNACTSLSAYEQG 529
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H L+K ++ AL+ YAKC IEDA F + + + WS M+ GL+ +
Sbjct: 530 KQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQH 589
Query: 361 GRYDEAFCLFRDSIGERV 414
G A LF + E V
Sbjct: 590 GHGKRALDLFHRMLDEGV 607
Score = 64.3 bits (155), Expect = 2e-08
Identities = 38/121 (31%), Positives = 65/121 (53%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN MISAY +D++ +A+ + EM+ PN++ S ++ AC +R + G
Sbjct: 172 SWNTMISAYVK-NDQSGDAIGVFREMVWSGER------PNEFGFSCVVNACTGSRDLEAG 224
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+HG +++ E + AL++MY+K IE A VF+KM + W+ ++G +
Sbjct: 225 RQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTH 284
Query: 361 G 363
G
Sbjct: 285 G 285
>ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
gi|241932203|gb|EES05348.1| hypothetical protein
SORBIDRAFT_04g024590 [Sorghum bicolor]
Length = 691
Score = 88.6 bits (218), Expect = 8e-16
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Frame = +1
Query: 1 SWNVMISA-YSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTE 177
SWN +I+ +H D A++++ +M LG VPN + LS +L+ACA A A
Sbjct: 270 SWNALIAGCVTHGHDH--RALELLLQMKP------LGVVPNVFTLSSVLKACAGAGAFNL 321
Query: 178 GMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSH 357
G QIHG ++K +++E V L++MYAK ++DA++VFD M + L W+ +++G SH
Sbjct: 322 GRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSH 381
Query: 358 NGRYDEAFCLF 390
+GR+ E LF
Sbjct: 382 DGRHGEVLSLF 392
Score = 75.9 bits (185), Expect = 5e-12
Identities = 46/134 (34%), Positives = 69/134 (51%)
Frame = +1
Query: 13 MISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEGMQIH 192
M++A S D +A+K+ +ML++ G P+ ++LS LL ACA A +G Q+H
Sbjct: 478 MMTALSQCDHGE-DAIKLFVQMLRK------GLEPDSFVLSSLLNACASLSAYEQGKQVH 530
Query: 193 GLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNGRYD 372
L+K ++ AL+ YAKC IEDA F + K + WS M+ GL+ +G
Sbjct: 531 AHLIKRQFTSDVFAGNALVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGK 590
Query: 373 EAFCLFRDSIGERV 414
A LF + E V
Sbjct: 591 RALELFHRMLDEGV 604
Score = 62.0 bits (149), Expect = 8e-08
Identities = 38/121 (31%), Positives = 65/121 (53%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN MISAY +D+ +AV + EM+ PN++ S ++ AC +R G
Sbjct: 169 SWNGMISAYVK-NDRCRDAVGVFREMVWSGER------PNEFGFSCVVNACTGSRDWETG 221
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+HG++++ + + AL++MY+K IE A VF+K+ + W+ ++AG +
Sbjct: 222 RQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTH 281
Query: 361 G 363
G
Sbjct: 282 G 282
>gb|EMT20741.1| hypothetical protein F775_07206 [Aegilops tauschii]
Length = 737
Score = 88.2 bits (217), Expect = 1e-15
Identities = 49/130 (37%), Positives = 75/130 (57%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
+W+ MI+ Y+ + +A +M +ML GF P ++ L G+L AC+ A+ EG
Sbjct: 290 TWSAMITGYAQNGNAE-SAFRMFLQMLAA------GFSPTEFTLVGVLNACSDVGALMEG 342
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q HGL++K E + V+ AL++MYAKC I DA++ FD+ + W+ MVAG N
Sbjct: 343 KQTHGLMVKLGFEVQVYVKSALVDMYAKCGCITDAKEGFDQFHELDIVLWTAMVAGHVQN 402
Query: 361 GRYDEAFCLF 390
G Y+EA L+
Sbjct: 403 GEYEEALRLY 412
Score = 70.5 bits (171), Expect = 2e-10
Identities = 40/131 (30%), Positives = 67/131 (51%)
Frame = +1
Query: 4 WNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEGM 183
W M++ + + A+++ + M KE G +P ++ +L+ACA A+ G
Sbjct: 392 WTAMVAGHVQNGEYE-EALRLYARMDKE------GIIPTNLTITSVLKACAGLAALEPGK 444
Query: 184 QIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNG 363
Q+H +LK V AL MY+KC ++D VF +M K + W+ +++G S NG
Sbjct: 445 QLHTQILKFGFGLGSSVGSALSTMYSKCGNLDDGTVVFRRMPHKDVIAWNSIISGFSQNG 504
Query: 364 RYDEAFCLFRD 396
R +EA LF +
Sbjct: 505 RGNEALDLFEE 515
Score = 60.1 bits (144), Expect = 3e-07
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SWN +++ SH + A+ M+ ++ +P+ + + + A A+AR+ + G
Sbjct: 84 SWNSLLNPLSHHHPRA--ALSNFRSMMFSSSP---AILPSPHSFAAVFTAAARARSASAG 138
Query: 181 MQIHGLLLKCLGETEEI-VQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSH 357
H L K T + V ALL+MY K + DA++VFD+M + W+ MVAG +
Sbjct: 139 AAAHALACKVPSATSNVFVSTALLSMYCKLDLVPDARRVFDEMPLRNEFSWAAMVAGYAS 198
Query: 358 NGRYDEAFCLFRDSIGE 408
+EAF +F+ + E
Sbjct: 199 TKCSEEAFEIFQLMLAE 215
>ref|XP_006663280.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Oryza brachyantha]
Length = 621
Score = 87.4 bits (215), Expect = 2e-15
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Frame = +1
Query: 1 SWNVMISAY---SHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAV 171
SW MI+AY H D A++M SEM+ E GF PN++ + +L+ACA+ + V
Sbjct: 253 SWTTMITAYVQHGHGDQ----ALRMFSEMVSE------GFRPNEFTVCSVLKACAEEKTV 302
Query: 172 TEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGL 351
G Q+H ++K + + + V AL+ MYA+C +I DAQ VFD M + W+ M++G
Sbjct: 303 RFGKQLHCAVVKKMYKNDIHVGSALVTMYARCGEIFDAQTVFDMMPRRNTITWTSMISGY 362
Query: 352 SHNGRYDEAFCLFRDSIGERV 414
+ +G ++A LFR RV
Sbjct: 363 AQSGHGEKAILLFRKMKMRRV 383
Score = 81.3 bits (199), Expect = 1e-13
Identities = 43/126 (34%), Positives = 70/126 (55%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW +IS Y++ + A+K + +ML + G PN Y S L+ACAK A+ G
Sbjct: 455 SWTALISGYNNLGHN-VEALKSLDDMLWD------GVKPNTYTYSSALKACAKLEALQYG 507
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+IHG + K + V +L++MY +C K+++A++VFD M L W +++ G + N
Sbjct: 508 RKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVIITGFAQN 567
Query: 361 GRYDEA 378
G +EA
Sbjct: 568 GLCEEA 573
Score = 55.8 bits (133), Expect = 6e-06
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Frame = +1
Query: 1 SWNVMISAY---SHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAV 171
SW M++AY H + MV L+ N+ L FV LL++C +
Sbjct: 153 SWTAMMNAYLKLGHYGEVVRLFFDMVGSGLQGNS---LTFVC-------LLKSCGERCDA 202
Query: 172 TEGMQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGL 351
G Q+H ++K G + IV A+ + YA+C + A +FDKM + + W+ M+
Sbjct: 203 KLGQQVHCCIVKG-GWSNVIVDSAVAHFYAQCGNVASASAIFDKMASRDVISWTTMITAY 261
Query: 352 SHNGRYDEAFCLFRDSIGE 408
+G D+A +F + + E
Sbjct: 262 VQHGHGDQALRMFSEMVSE 280
>gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 87.4 bits (215), Expect = 2e-15
Identities = 50/138 (36%), Positives = 79/138 (57%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW MI+AY A++M SEM+ E GF PN++ + +L+ACA+ +AV G
Sbjct: 215 SWTTMITAYVQHGHGG-QALRMFSEMVSE------GFRPNEFTVCSVLKACAEEKAVRFG 267
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H +LK + + + + AL+ MYA+C ++ DAQ VFD M + W+ M++G + +
Sbjct: 268 KQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQS 327
Query: 361 GRYDEAFCLFRDSIGERV 414
G ++A LFR RV
Sbjct: 328 GHGEKAILLFRKMKMRRV 345
Score = 80.9 bits (198), Expect = 2e-13
Identities = 43/126 (34%), Positives = 69/126 (54%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW +IS Y++ + A+K + +ML + G PN Y S L+ACAK A+ G
Sbjct: 417 SWTALISGYNNLGHN-VEALKSLDDMLWD------GVKPNTYTYSSALKACAKLEALQYG 469
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+IHG + K + V +L++MY +C K+++A+ VFD M L W +++ G + N
Sbjct: 470 RKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFAQN 529
Query: 361 GRYDEA 378
G +EA
Sbjct: 530 GLCEEA 535
>ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein
[Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative,
expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa
Japonica Group]
Length = 616
Score = 87.4 bits (215), Expect = 2e-15
Identities = 50/138 (36%), Positives = 79/138 (57%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW MI+AY A++M SEM+ E GF PN++ + +L+ACA+ +AV G
Sbjct: 248 SWTTMITAYVQHGHGG-QALRMFSEMVSE------GFRPNEFTVCSVLKACAEEKAVRFG 300
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H +LK + + + + AL+ MYA+C ++ DAQ VFD M + W+ M++G + +
Sbjct: 301 KQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQS 360
Query: 361 GRYDEAFCLFRDSIGERV 414
G ++A LFR RV
Sbjct: 361 GHGEKAILLFRKMKMRRV 378
Score = 80.9 bits (198), Expect = 2e-13
Identities = 43/126 (34%), Positives = 69/126 (54%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW +IS Y++ + A+K + +ML + G PN Y S L+ACAK A+ G
Sbjct: 450 SWTALISGYNNLGHN-VEALKSLDDMLWD------GVKPNTYTYSSALKACAKLEALQYG 502
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
+IHG + K + V +L++MY +C K+++A+ VFD M L W +++ G + N
Sbjct: 503 RKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFAQN 562
Query: 361 GRYDEA 378
G +EA
Sbjct: 563 GLCEEA 568
>ref|XP_006472673.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Citrus sinensis]
Length = 620
Score = 87.0 bits (214), Expect = 2e-15
Identities = 47/131 (35%), Positives = 79/131 (60%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW MI+A S + A+ M S ML E GF+PN++ + +L+AC + RA+ G
Sbjct: 256 SWTAMITACSQ-QARGDEAIFMFSRMLSE------GFLPNEFTVCSVLKACGEERALKLG 308
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H ++K L + + ++ +L++MYAKC +I D+++VFD+M + W+ ++AG +
Sbjct: 309 RQLHAAIVKKLYKDDVFIRTSLVDMYAKCGEILDSRRVFDEMGNRNTVTWTSIIAGYARE 368
Query: 361 GRYDEAFCLFR 393
G +EA LFR
Sbjct: 369 GLGEEAIGLFR 379
Score = 84.0 bits (206), Expect = 2e-14
Identities = 49/129 (37%), Positives = 68/129 (52%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW +IS Y+ ++ A+ + +ML+E G PN + S L+ACAK V++G
Sbjct: 458 SWTAIISGYACLGHES-EALDFLKDMLEE------GVEPNPFTYSSALKACAKLENVSQG 510
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
M IH + K + V AL+NMYAKC I +A QVFD M + L W M+ G + N
Sbjct: 511 MLIHSSVKKTTSLSNVYVGSALINMYAKCGYISEASQVFDNMPERNLFTWKSMIVGYARN 570
Query: 361 GRYDEAFCL 387
G EA L
Sbjct: 571 GLCQEALKL 579
Score = 61.6 bits (148), Expect = 1e-07
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Frame = +1
Query: 25 YSHTDDKTINAVKMVSEM-LKENNNYELGFVPN------KYILSGLLRACAKARAVTEGM 183
Y T + N K + L++N + E P+ +L+ LR+C + V
Sbjct: 52 YRETTNSHTNFHKSSDDFSLQDNADAESSHAPSVSQSVDSNLLAIWLRSCNTVKQVK--- 108
Query: 184 QIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHNG 363
+IH ++LK L ++ V L+++Y K K+ +A++VFDKM + + W+ MV G S G
Sbjct: 109 RIHAIVLKSLRKSVLYVDNNLISVYVKLGKLVEARKVFDKMSERNVVSWTAMVNGYSRFG 168
Query: 364 RYDEAFCLFRDSI 402
DEAF LF +SI
Sbjct: 169 FVDEAFMLFSESI 181
>ref|XP_006434069.1| hypothetical protein CICLE_v10003712mg [Citrus clementina]
gi|557536191|gb|ESR47309.1| hypothetical protein
CICLE_v10003712mg [Citrus clementina]
Length = 438
Score = 87.0 bits (214), Expect = 2e-15
Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Frame = +1
Query: 1 SWNVMISAYSHTDDKTINAVKMVSEMLKENNNYELGFVPNKYILSGLLRACAKARAVTEG 180
SW MI+A S + A+ M S ML E GF+PN++ + +L+AC + RA+ G
Sbjct: 239 SWTAMITACSQ-QARGDEAIFMFSRMLSE------GFLPNEFTVCSVLKACGEERALKLG 291
Query: 181 MQIHGLLLKCLGETEEIVQGALLNMYAKCRKIEDAQQVFDKMQGKVLDCWSMMVAGLSHN 360
Q+H ++K L + + ++ +L++MYAKC +I D+++VFD+M + W+ +++G +
Sbjct: 292 RQLHAAIVKKLYKDDVFIRTSLVDMYAKCGEILDSRRVFDEMGNRNTVTWTSIISGYARE 351
Query: 361 GRYDEAFCLFR-----DSIGER 411
G +EA LFR DS+ ER
Sbjct: 352 GLGEEAIGLFRASQVFDSMPER 373