BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00028153
         (494 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAH79979.1| putative unclassified retrotransposon protein [O...    60   3e-07
ref|XP_002446549.1| hypothetical protein SORBIDRAFT_06g017955 [S...    59   9e-07
ref|XP_002457847.1| hypothetical protein SORBIDRAFT_03g015536 [S...    57   2e-06
ref|NP_001173560.1| Os03g0643433 [Oryza sativa Japonica Group] g...    56   6e-06
gb|AAP53939.1| retrotransposon protein, putative, unclassified [...    55   1e-05

>dbj|BAH79979.1| putative unclassified retrotransposon protein [Oryza sativa Indica
            Group]
          Length = 1283

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 49/86 (56%)
 Frame = +3

Query: 3    PPSISKQINVLFRNFFWVKSDKPESIGFPRCAWKDCCSPTQIGGLGLHNIDFHSKALSSK 182
            P  + K+++     F+W   D+ +     +  W   C P + GGLG+H++D  + AL SK
Sbjct: 1176 PRGVLKKLDYFRSRFYWQCDDQKKKYRLTK--WSIMCRPKEQGGLGIHDLDMKNIALLSK 1233

Query: 183  WIFRSLSSNATWKQLLFHRDLQGRIV 260
            W+F+ L ++  W+QL+ ++ L  ++V
Sbjct: 1234 WLFKLLMTDGVWQQLIRNKYLGSKLV 1259


>ref|XP_002446549.1| hypothetical protein SORBIDRAFT_06g017955 [Sorghum bicolor]
           gi|241937732|gb|EES10877.1| hypothetical protein
           SORBIDRAFT_06g017955 [Sorghum bicolor]
          Length = 292

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
 Frame = +3

Query: 3   PPSISKQINVLFRNFFWVKSDKPESIGFPRCAWKDCCSPTQIGGLGLHNIDFHSKALSSK 182
           P ++ ++I+     FFW      +     +  W+  C P   GG+G++N+D  +K L SK
Sbjct: 5   PRAVLEKIDCFRSRFFWQNDQHKKKYRLAK--WEVLCQPRDQGGIGIYNLDIQNKCLLSK 62

Query: 183 WIFRSLSSNATWKQLLFHRDLQ----GRIVK-----YAWWNPMNFEYTIFILDKFKSPSY 335
           W+F+ L+ +  W++LL ++ ++    G  VK     + W + MN +        FK    
Sbjct: 63  WLFKLLNEDGMWQELLRNKYIKDKTLGSCVKKSTDSHFWKSLMNIKDLFMEFGSFKINDG 122

Query: 336 FLLHLVLKAWNAIKP 380
                 +  W   KP
Sbjct: 123 SQTRFWVDTWLGNKP 137


>ref|XP_002457847.1| hypothetical protein SORBIDRAFT_03g015536 [Sorghum bicolor]
           gi|241929822|gb|EES02967.1| hypothetical protein
           SORBIDRAFT_03g015536 [Sorghum bicolor]
          Length = 327

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 26/98 (26%), Positives = 48/98 (48%)
 Frame = +3

Query: 3   PPSISKQINVLFRNFFWVKSDKPESIGFPRCAWKDCCSPTQIGGLGLHNIDFHSKALSSK 182
           P  + ++I+     F+W      +     R  W+  C P   GGLG+ N++  +K L SK
Sbjct: 57  PKGVLEKIDCFRSRFYWQNDQHKKKYRLVR--WEVMCQPRDQGGLGIQNLELQNKCLLSK 114

Query: 183 WIFRSLSSNATWKQLLFHRDLQGRIVKYAWWNPMNFEY 296
           W+F+ L+ N  W+ LL ++ ++ +        PM+  +
Sbjct: 115 WLFKLLNENGMWQDLLRNKYIKDKTFSGCAKKPMDSHF 152


>ref|NP_001173560.1| Os03g0643433 [Oryza sativa Japonica Group]
           gi|255674738|dbj|BAH92288.1| Os03g0643433 [Oryza sativa
           Japonica Group]
          Length = 721

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/86 (27%), Positives = 44/86 (51%)
 Frame = +3

Query: 3   PPSISKQINVLFRNFFWVKSDKPESIGFPRCAWKDCCSPTQIGGLGLHNIDFHSKALSSK 182
           P  I K+++     FFW   +  +     +  W   CSP + GGLG+ N++  ++ L SK
Sbjct: 567 PKGILKKLDYYRSRFFWQCDENKKKYRLAK--WSVLCSPKECGGLGIQNLETQNRCLLSK 624

Query: 183 WIFRSLSSNATWKQLLFHRDLQGRIV 260
           W+F+ ++    W+ LL  + L  + +
Sbjct: 625 WLFQLINEEGVWQTLLRRKYLSNKTI 650


>gb|AAP53939.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1652

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 23/86 (26%), Positives = 44/86 (51%)
 Frame = +3

Query: 3    PPSISKQINVLFRNFFWVKSDKPESIGFPRCAWKDCCSPTQIGGLGLHNIDFHSKALSSK 182
            P  I K+++     FFW   +  +     R  W   C P + GGLG+ N++  +K L SK
Sbjct: 1526 PKGILKKLDYYRSRFFWQCDEHKKKYRLAR--WSVLCKPKECGGLGIQNLEIQNKCLLSK 1583

Query: 183  WIFRSLSSNATWKQLLFHRDLQGRIV 260
            W+++ ++    W+ +L ++ L  + +
Sbjct: 1584 WLYKLINEEGVWQDILRNKYLTKKTI 1609