BLASTX nr result
ID: Ephedra25_contig00028016
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00028016
(511 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 71 1e-10
emb|CAA12932.1| reverse transcriptase [Pinus elliottii] 71 2e-10
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 56 5e-10
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 59 1e-09
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 68 1e-09
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 60 2e-09
emb|CAA11923.1| Reverse Transcriptase [Picea abies] 67 2e-09
emb|CAN80288.1| hypothetical protein VITISV_006820 [Vitis vinifera] 63 3e-09
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 67 3e-09
ref|NP_001057661.2| Os06g0484800 [Oryza sativa Japonica Group] g... 67 3e-09
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 56 4e-09
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 65 7e-09
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 65 9e-09
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 65 9e-09
emb|CAN81751.1| hypothetical protein VITISV_026939 [Vitis vinifera] 60 2e-08
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 64 2e-08
emb|CAN73833.1| hypothetical protein VITISV_034783 [Vitis vinifera] 64 2e-08
gb|EAZ45328.1| hypothetical protein OsJ_29974 [Oryza sativa Japo... 64 2e-08
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 64 2e-08
gb|ABF97084.1| retrotransposon protein, putative, unclassified [... 64 2e-08
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 71.2 bits (173), Expect = 1e-10
Identities = 33/95 (34%), Positives = 60/95 (63%)
Frame = -1
Query: 304 SYYFWYG*KQKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP* 125
S +F + PGP ++FF++ S+V P ++A + + + +WNST++T++P
Sbjct: 453 SEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPK 512
Query: 124 KNEVRLPSEYRPIGLCSSIYKILSKLLAKRIKFLL 20
K +E+RPI C++IYK++SKLLA+R++ +L
Sbjct: 513 KPNADRITEFRPISCCNAIYKVISKLLARRLENIL 547
>emb|CAA12932.1| reverse transcriptase [Pinus elliottii]
Length = 194
Score = 70.9 bits (172), Expect = 2e-10
Identities = 35/88 (39%), Positives = 54/88 (61%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP + +F++ +VK DI I+ DS + ++ NST I L+P E P ++R
Sbjct: 2 PGPDGITINFYKVCWEIVKNDIWEIVEDSRRSKTILKSLNSTFIALVPKVEEAHTPEKFR 61
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI LC+ IYKI+SK++A R+K +L +I
Sbjct: 62 PIALCNVIYKIISKVIANRLKIILPGII 89
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 55.8 bits (133), Expect(2) = 5e-10
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP F+ ++ D+ I ++FP N T I L+P R ++YR
Sbjct: 341 PGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYR 400
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI LC+ YKI++K++ KR++ +L +LI
Sbjct: 401 PIALCNIFYKIVAKIMTKRMQLILPKLI 428
Score = 33.5 bits (75), Expect(2) = 5e-10
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -2
Query: 462 EDENFLDIVKSYFQDLYSSR-EFDTSIIVDLIPKELS*EDVDFIMREVAEE*PHHTIFGM 286
E+ I+ YFQ +++S + D S++ + I +S D DF+ R +E +F +
Sbjct: 276 EEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSI 335
Query: 285 ARNKSLGP 262
+K+ GP
Sbjct: 336 NASKAPGP 343
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 58.5 bits (140), Expect(2) = 1e-09
Identities = 27/91 (29%), Positives = 50/91 (54%)
Frame = -1
Query: 277 QKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSE 98
+ PGP +F++ +++ + + I P NST + L+P K E + +
Sbjct: 357 KSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKD 416
Query: 97 YRPIGLCSSIYKILSKLLAKRIKFLLSRLIL 5
YRPI C+ +YK++SK++A R+K +L + I+
Sbjct: 417 YRPISCCNVLYKVISKIIANRLKLVLPKFIV 447
Score = 29.6 bits (65), Expect(2) = 1e-09
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 378 DLIPKELS*EDVDFIMREVAEE*PHHTIFGMARNKSLGP 262
DL+P S D + + V+ E H +F M +KS GP
Sbjct: 323 DLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGP 361
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 67.8 bits (164), Expect = 1e-09
Identities = 35/91 (38%), Positives = 51/91 (56%)
Frame = -1
Query: 277 QKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSE 98
+ PGP ++FF+ SL PD +A I P N+T + L+P K+E +
Sbjct: 766 KSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKD 825
Query: 97 YRPIGLCSSIYKILSKLLAKRIKFLLSRLIL 5
YRPI C+ +YK++SK+LA R+K LL IL
Sbjct: 826 YRPISCCNVLYKVISKILANRLKLLLPSFIL 856
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 60.5 bits (145), Expect(2) = 2e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Frame = -1
Query: 277 QKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSE 98
+ PGP ++F++ + ++ +++ I P NST + L+P K E R +
Sbjct: 190 KSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKD 249
Query: 97 YRPIGLCSSIYKILSKLLAKRIKFLLSRLIL 5
YRPI C+ +YK +SK+LA R+K +L + I+
Sbjct: 250 YRPISCCNVLYKAISKILANRLKRILPKFIV 280
Score = 26.6 bits (57), Expect(2) = 2e-09
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -2
Query: 432 SYFQDLYSSREFD-----TSIIVDLIPKELS*EDVDFIMREVAEE*PHHTIFGMARNKSL 268
+YFQD + D + +L+P S +D + R V E IF M ++KS
Sbjct: 133 NYFQDFLQTIPADYEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSP 192
Query: 267 GP 262
GP
Sbjct: 193 GP 194
>emb|CAA11923.1| Reverse Transcriptase [Picea abies]
Length = 182
Score = 67.0 bits (162), Expect = 2e-09
Identities = 33/88 (37%), Positives = 52/88 (59%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP DFF ++++ ++ I+ DS N+T ITL+P + P++YR
Sbjct: 2 PGPDGFTNDFFHHCWAMIRHEVWEILEDSRAMGQVLQALNATFITLIPKEGNALRPAQYR 61
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI LC+ IYK+L+K++A+R K LL +I
Sbjct: 62 PIALCNVIYKLLTKVIARRFKPLLPAII 89
>emb|CAN80288.1| hypothetical protein VITISV_006820 [Vitis vinifera]
Length = 1894
Score = 62.8 bits (151), Expect(2) = 3e-09
Identities = 30/88 (34%), Positives = 53/88 (60%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP F+Q+ +VK +++ + + +Y+SF N+T + L+P K ++R
Sbjct: 1199 PGPDGFTMAFWQDCWDVVKEEVMKLFKEFFEYESFAKSLNTTFLVLIPKKGGADDLGDFR 1258
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI L S+YK+L+K+LA R+K +L R++
Sbjct: 1259 PISLLGSLYKLLAKVLANRLKKVLDRVV 1286
Score = 23.9 bits (50), Expect(2) = 3e-09
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 465 SEDENFLDIVKSYFQDLYSSREFDTSIIVDLIPKELS*EDVDFIMREVAEE*PHHTIFGM 286
+ED+ + + + FQ+L S + I L K+L+ + + + +EE H + M
Sbjct: 1134 TEDQEVREGIVNAFQNLLSEEPGWRTDIEGLQLKQLNSREAENLEVPFSEEEIHFALMEM 1193
Query: 285 ARNKSLGP 262
+K+ GP
Sbjct: 1194 RGDKAPGP 1201
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/91 (36%), Positives = 56/91 (61%)
Frame = -1
Query: 280 KQKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPS 101
++ PGP + FFQ++ +++K D+L+++N Q F N+T+I L+P +
Sbjct: 227 EKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMT 286
Query: 100 EYRPIGLCSSIYKILSKLLAKRIKFLLSRLI 8
E RPI LC+ YK++SK+L +R+K +L LI
Sbjct: 287 ELRPISLCNVGYKVISKILCQRLKTVLPNLI 317
>ref|NP_001057661.2| Os06g0484800 [Oryza sativa Japonica Group]
gi|125597263|gb|EAZ37043.1| hypothetical protein
OsJ_21387 [Oryza sativa Japonica Group]
gi|255677053|dbj|BAF19575.2| Os06g0484800 [Oryza sativa
Japonica Group]
Length = 935
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/81 (40%), Positives = 49/81 (60%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP + F++ S +K D++ ++ D Q + P E N T+I L+P KN P ++R
Sbjct: 267 PGPDGLNAAFYRSAWSWIKDDLMTLVQDFYQTGNIPPELNKTNIVLIPKKNRSISPKDFR 326
Query: 91 PIGLCSSIYKILSKLLAKRIK 29
PI LC+ YKIL+K +A RIK
Sbjct: 327 PISLCNVPYKILAKSIANRIK 347
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 56.2 bits (134), Expect(2) = 4e-09
Identities = 34/88 (38%), Positives = 47/88 (53%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PG FFQ N S V +I A + + P + N T + L+P + S+YR
Sbjct: 422 PGRDGFSASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIPAPQKVSDYR 481
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI LCS YKI++KLLAKR++ +L I
Sbjct: 482 PIALCSVYYKIIAKLLAKRLQPILHSCI 509
Score = 30.0 bits (66), Expect(2) = 4e-09
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 462 EDENFLDIVKSYFQDLYSSREFD-TSIIVDLI 370
ED ++ + YFQD+++S+E D TS++ + +
Sbjct: 357 EDSEIIETISDYFQDIFTSQEGDRTSVVAEAL 388
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 65.5 bits (158), Expect = 7e-09
Identities = 32/88 (36%), Positives = 54/88 (61%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP F+Q LVKP+++ ++++ + FP +N T I L+P + +L +R
Sbjct: 453 PGPDGFQPLFYQRFWDLVKPNVMHLVSEILSGRDFPEGFNDTFIVLIPKMDIPQLAKHFR 512
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PIGLC+ +YKI++K++ R+K +L LI
Sbjct: 513 PIGLCNIVYKIVTKVIINRLKPILPSLI 540
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 65.1 bits (157), Expect = 9e-09
Identities = 33/89 (37%), Positives = 50/89 (56%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP ++FF+ S+ D +A I P N+T + L+P K+E L +YR
Sbjct: 44 PGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYR 103
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLIL 5
PI C+ IYK++SK++A R+K +L IL
Sbjct: 104 PISCCNVIYKVISKIIANRLKVMLPTFIL 132
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/90 (35%), Positives = 52/90 (57%)
Frame = -1
Query: 277 QKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSE 98
+ PGP ++FF+E+ ++ P+ + I P NST + L+P K E + +
Sbjct: 22 KSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKD 81
Query: 97 YRPIGLCSSIYKILSKLLAKRIKFLLSRLI 8
YRPI C+ +YK++SK+LA R+K LL + I
Sbjct: 82 YRPISCCNVMYKVISKILANRLKLLLPQFI 111
>emb|CAN81751.1| hypothetical protein VITISV_026939 [Vitis vinifera]
Length = 1653
Score = 60.1 bits (144), Expect(2) = 2e-08
Identities = 30/88 (34%), Positives = 51/88 (57%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP F+Q+ +VK +++ + + Y SF N+T + L+P K ++R
Sbjct: 1068 PGPDGFTMAFWQDCWDVVKEEVMELFKEFFXYGSFAKSLNTTFLVLIPKKGGADDLGDFR 1127
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI L S+YK+L+K+LA R+K +L R++
Sbjct: 1128 PISLLGSLYKLLAKVLANRLKKVLDRVV 1155
Score = 23.9 bits (50), Expect(2) = 2e-08
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 465 SEDENFLDIVKSYFQDLYSSREFDTSIIVDLIPKELS*EDVDFIMREVAEE*PHHTIFGM 286
+ED+ + + + FQ+L S + I L K+L+ + + + +EE H + M
Sbjct: 1003 TEDQEVREGIVNAFQNLLSEEPGWRADIEGLQLKQLNSREAENLEVPFSEEEIHFALMEM 1062
Query: 285 ARNKSLGP 262
+K+ GP
Sbjct: 1063 RGDKAPGP 1070
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/87 (34%), Positives = 54/87 (62%)
Frame = -1
Query: 268 GPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYRP 89
GP +FF++ S++ P++LA I++ +WN+T++ L+P + SE+RP
Sbjct: 326 GPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRP 385
Query: 88 IGLCSSIYKILSKLLAKRIKFLLSRLI 8
I +++YK++SKLL R++ LLS +I
Sbjct: 386 ISCLNTLYKVISKLLTSRLQGLLSAVI 412
>emb|CAN73833.1| hypothetical protein VITISV_034783 [Vitis vinifera]
Length = 1168
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/88 (36%), Positives = 52/88 (59%)
Frame = -1
Query: 271 PGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYR 92
PGP F+Q + LVK +I+ + + +SF N NST + L+P K ++R
Sbjct: 958 PGPDGFTIAFWQSSWGLVKEEIMDLFREFYNQRSFANSLNSTFLVLIPKKGGAEDLGDFR 1017
Query: 91 PIGLCSSIYKILSKLLAKRIKFLLSRLI 8
PI L S+YK+L+K+LA R+K +L +++
Sbjct: 1018 PISLLGSLYKLLAKVLANRLKKVLDKVV 1045
>gb|EAZ45328.1| hypothetical protein OsJ_29974 [Oryza sativa Japonica Group]
Length = 469
Score = 63.9 bits (154), Expect = 2e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Frame = -1
Query: 295 FWYG*KQKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNE 116
F G + PGP F+Q N L+K D++ + + P+ N+T+I L+P N+
Sbjct: 121 FQIGPLKAPGPDGFPARFYQRNWGLIKSDVVRAVKEFFHTGIMPDGINATAIVLIPKVNQ 180
Query: 115 VRLPSEYRPIGLCSSIYKILSKLLAKRIKFLLSRLI 8
E+RPI LC+ IYKI+SK L R++ +L LI
Sbjct: 181 PMELKEFRPISLCNVIYKIVSKCLVNRLRPILDDLI 216
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/87 (34%), Positives = 54/87 (62%)
Frame = -1
Query: 268 GPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNEVRLPSEYRP 89
GP +FF++ S++ P++LA I++ +WN+T++ L+P + SE+RP
Sbjct: 326 GPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRP 385
Query: 88 IGLCSSIYKILSKLLAKRIKFLLSRLI 8
I +++YK++SKLL R++ LLS +I
Sbjct: 386 ISCLNTLYKVISKLLTSRLQGLLSAVI 412
>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1184
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/96 (31%), Positives = 57/96 (59%)
Frame = -1
Query: 295 FWYG*KQKPGPSLVVTDFFQEN*SLVKPDILAIINDSPQYQSFPNEWNSTSITLLP*KNE 116
F G + PGP + F++ +++ D++ + D+ P+ WN T++ ++P ++
Sbjct: 301 FSIGDLKAPGPDGLHAVFYKRFWDMLESDLVKEVLDAINTMKIPDGWNDTTVVMIPKVDK 360
Query: 115 VRLPSEYRPIGLCSSIYKILSKLLAKRIKFLLSRLI 8
+++RPI LC+ +YKI+SK+LA R+K LL +I
Sbjct: 361 PDRVTQFRPISLCNVVYKIISKMLANRLKCLLPEII 396