BLASTX nr result
ID: Ephedra25_contig00027949
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00027949
(975 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 370 e-100
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 367 5e-99
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 367 5e-99
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 365 1e-98
ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [S... 365 1e-98
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 365 1e-98
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme... 365 1e-98
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 365 2e-98
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 365 2e-98
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 364 3e-98
gb|ACR38600.1| unknown [Zea mays] 363 4e-98
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 363 4e-98
ref|NP_001183867.1| RNA-dependent DNA polymerase [Zea mays] gi|8... 363 4e-98
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 362 9e-98
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 362 9e-98
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 362 1e-97
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 362 2e-97
ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polyme... 362 2e-97
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] 361 2e-97
ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutr... 361 3e-97
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 370 bits (951), Expect = e-100
Identities = 189/327 (57%), Positives = 239/327 (73%), Gaps = 6/327 (1%)
Frame = +2
Query: 8 SLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQAFK 184
++Q + L L MLTDRE A+D L +S D+ ++L++ML+ Y P+SE YL MML+A
Sbjct: 648 AMQEEQLQLLGKMLTDREAALDVLESLSGADSRSILVKMLNGFYEPNSEPYLSMMLKAHY 707
Query: 185 DCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVE---D 355
L K++ RIFVPKGRVL+GCLDET LNYG+VF+R+T KTK NL D
Sbjct: 708 AYQLSDLKSRCRIFVPKGRVLIGCLDETGILNYGQVFVRITVTKTKEKIGDENLQNVDGD 767
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSGS 529
T ++ GKV+VTKNPCLHPGDIRVL+A+ EL K + DC+VFPQKG RPHPNECSG
Sbjct: 768 DSTRIIVGKVVVTKNPCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQKGPRPHPNECSGG 827
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDL+FISWD+ LIPP D MD R P ++H VT+EE+ ++FV+YM+NDTLG IS
Sbjct: 828 DLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAIS 887
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
AH VHAD+EP KARS KCLELA+L AVDFAKTG PAEMP +L P+E+PDFME+ D+P
Sbjct: 888 TAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKP 947
Query: 890 MYISTGILGKLYRAAKDKLSENKKAVI 970
MYIS G+LGKLYRA + ++ + ++
Sbjct: 948 MYISNGVLGKLYRALVESTTQVRSNIV 974
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 367 bits (941), Expect = 5e-99
Identities = 189/317 (59%), Positives = 233/317 (73%), Gaps = 6/317 (1%)
Frame = +2
Query: 8 SLQRDALLHLELMLTDREKAIDFLSLMSSGDNN-MLIEMLSSGYCPSSEQYLMMMLQAFK 184
+LQ D L L MLTD+E A+D L ++ D+N +L++ML Y P+SE YL MML+A
Sbjct: 649 ALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHY 708
Query: 185 DCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVE---D 355
L K++ RIFVPKGRVL+GCLDET LNYG+VF+R+T KTK + NL D
Sbjct: 709 TYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGD 768
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSGS 529
T ++ GKV+VTKNPCLHPGDIRVL+AV EL K + DC+VFPQKGHRPHPNECSG
Sbjct: 769 DSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGG 828
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDL+FISWD+ LIP + MD R P ++H VT+EE+ ++FV+YM+NDTLG IS
Sbjct: 829 DLDGDLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAIS 888
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
AH VHAD+E KA+S KCLELA+L AVDFAKTG PAEMP SL P+E+PDFME+ ++P
Sbjct: 889 TAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKP 948
Query: 890 MYISTGILGKLYRAAKD 940
MYIS G+LGKLYRA D
Sbjct: 949 MYISKGVLGKLYRATID 965
Score = 127 bits (320), Expect = 5e-27
Identities = 62/101 (61%), Positives = 77/101 (76%)
Frame = +2
Query: 629 LNHSVTIEEVQEYFVNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFA 808
L H + ++ ++FV+YM+ DTLG IS AH VHAD E KA+S KCLELA+L AVDFA
Sbjct: 1111 LLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFA 1170
Query: 809 KTGVPAEMPYSLFPKEYPDFMEKNDRPMYISTGILGKLYRA 931
KTG AEMP L PKE+PDFME+ ++PMY+S G+LGKLYRA
Sbjct: 1171 KTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRA 1211
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 367 bits (941), Expect = 5e-99
Identities = 188/315 (59%), Positives = 231/315 (73%), Gaps = 5/315 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
FE+L + + L+ MLT+R+ A+D L M DN N+L +ML GY P+ E YL MMLQA
Sbjct: 641 FEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQA 700
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVE-- 352
+++ L +T+ RIFVPK RVL+GCLDET LNYG+V++RVT K + + +
Sbjct: 701 YRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKV 760
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSG 526
D T V+ GKVIVTKNPCLHPGDIRVL+AV EL K ++DC++FPQKG RPHPNECSG
Sbjct: 761 DDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSG 820
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGD +FI WDE LIP +A MD R P ++H VT+EE+Q++FV+YM+NDTLG+I
Sbjct: 821 GDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVI 880
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH VHAD+EP KARS KCLELA L AVDFAKTG PAEMP L PKE+PDFME+ D+
Sbjct: 881 STAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDK 940
Query: 887 PMYISTGILGKLYRA 931
PMYIS G LGKLYRA
Sbjct: 941 PMYISNGALGKLYRA 955
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 365 bits (938), Expect = 1e-98
Identities = 179/317 (56%), Positives = 235/317 (74%), Gaps = 4/317 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
FE QR+A+ L+ +LTD KA + L LMS G+N N+L E+L GY P +E +L MMLQ
Sbjct: 638 FEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT 697
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVEDS 358
F+ LL+ +TK+RIF+P GR +MGCLDET +LNYG+VF++++ + + +L S
Sbjct: 698 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 757
Query: 359 DT---CVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNECSGS 529
+ +++G V+V KNPCLHPGD+RVL+AVN+P L HM+DCVVFPQKG RPHPNECSGS
Sbjct: 758 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGS 817
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGD+YF+ WD+ LIPP QD MD +L+H V IE+V+EYF NY++ND+LG+I+
Sbjct: 818 DLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 877
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
NAH+V AD+EP KARS CL+LA+ AVDF KTGVPAE+P L+ KEYPDFMEK D+P
Sbjct: 878 NAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 937
Query: 890 MYISTGILGKLYRAAKD 940
Y S ++GKL+RA KD
Sbjct: 938 TYESQNVIGKLFRAVKD 954
>ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein
SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 365 bits (938), Expect = 1e-98
Identities = 182/327 (55%), Positives = 240/327 (73%), Gaps = 4/327 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQAF 181
FES+Q+D + + MLT++E A+ L + D EM+ GY PSSE YL+M+L+A
Sbjct: 645 FESMQQDDMHESDGMLTNKEAALSVLGKIGGADTKTASEMVLQGYEPSSEPYLLMILKAH 704
Query: 182 KDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLV--ED 355
+ L +T+ +I V KGRVL+GCLDET +L+YG+V+IR+TK + + Y +D
Sbjct: 705 RANRLTDIRTRCKIHVQKGRVLIGCLDETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDD 764
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSGS 529
T V+ GKV VTKNPCLHPGD+RVLEAV P L + +IDCVVFPQ+G RPHPNECSG
Sbjct: 765 GKTAVIVGKVAVTKNPCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRGERPHPNECSGG 824
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDL+FI+WD++LIP DA MD P ++H+VT+EE+Q++FVNYM+ND LG+IS
Sbjct: 825 DLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVNYMINDALGVIS 884
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
AH +HAD+ PLKARSP+CL+LA L AVDFAKTG PAEMP +L P+E+PDFME+ +RP
Sbjct: 885 TAHLIHADRNPLKARSPECLQLAALHSMAVDFAKTGAPAEMPVALRPREFPDFMERWERP 944
Query: 890 MYISTGILGKLYRAAKDKLSENKKAVI 970
MY+ST +LGKLYRAA + EN +A++
Sbjct: 945 MYVSTSVLGKLYRAAL-RHEENAEALL 970
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 365 bits (937), Expect = 1e-98
Identities = 179/319 (56%), Positives = 234/319 (73%), Gaps = 6/319 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
FE+ Q+DA+ L+ +L D E A + L LMS G+N N+L EML GY P SE +L MMLQ
Sbjct: 704 FETKQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQT 763
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKI-KTKLNYDGLNLVED 355
F+ L + KTK+RIF+P GR +MGCLDET L YG+VF++ + I +L+ GL+ + +
Sbjct: 764 FRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINE 823
Query: 356 SDTC----VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNECS 523
S + V+ GKVIV KNPCLHPGD+R+L A+++P L HM++CVVFPQKG RPHPNECS
Sbjct: 824 SGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECS 883
Query: 524 GSDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGL 703
GSDLDGD+YF+SWD LIP Q M+ P + L+H VTIEE++EYF NYM+ND+LG+
Sbjct: 884 GSDLDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGI 943
Query: 704 ISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKND 883
I+NAH+V ADKEP+KA S C++LA L AVDF KTGVPA++P L+ KEYPDFM+K D
Sbjct: 944 IANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTD 1003
Query: 884 RPMYISTGILGKLYRAAKD 940
+P Y S ++GKL+R KD
Sbjct: 1004 KPTYQSRRVIGKLFREVKD 1022
>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 365 bits (937), Expect = 1e-98
Identities = 180/322 (55%), Positives = 235/322 (72%), Gaps = 4/322 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQAF 181
FE +Q+D + L+ MLT++E A+ L + S + +ML GY P SE YL+M+L+A
Sbjct: 643 FELMQQDDMRELDEMLTNKEVALSVLGKIGSAETKTAADMLLQGYEPISEPYLLMILKAH 702
Query: 182 KDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKI--KTKLNYDGLNLVED 355
+D L ++K +I VPKGRVL+GCLDET L YG+V+IR+TK + K N +D
Sbjct: 703 QDNRLTDIRSKFKIHVPKGRVLLGCLDETGKLKYGQVYIRITKNNKEQKENEQPYFSEDD 762
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSGS 529
T L GKV V+KNPCLHPGD+RVLEAV P L K ++DCVVFPQ+G RPHPNECSG
Sbjct: 763 GKTVTLVGKVAVSKNPCLHPGDVRVLEAVYDPGLHAKKLVDCVVFPQRGERPHPNECSGG 822
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDLYF++WD++LIP DA MD P ++H VT+EE+Q++ VNYML+D+LG IS
Sbjct: 823 DLDGDLYFVTWDDKLIPEKADAPMDYTGARPRIMDHVVTLEEIQQHVVNYMLSDSLGAIS 882
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
NAH +HAD++P+KARSP+CL+LA L AVDFAKTG PAE+P SL P+E+PDFME+ D+P
Sbjct: 883 NAHLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAELPRSLRPREFPDFMERWDKP 942
Query: 890 MYISTGILGKLYRAAKDKLSEN 955
MYIS G+LGKLYRAA ++ +
Sbjct: 943 MYISNGVLGKLYRAAVSRMESS 964
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 365 bits (936), Expect = 2e-98
Identities = 178/315 (56%), Positives = 234/315 (74%), Gaps = 2/315 (0%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
F QR A+ L +LTD KA + L LMS+G++ N+L E+L GY P+ E +L MMLQ
Sbjct: 625 FLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQT 684
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVEDS 358
F+ LL+ +TK+RIF+P GR +MGCLDET +L YG+VF++ + + + +D + +
Sbjct: 685 FRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSL 744
Query: 359 DTC-VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNECSGSDL 535
D+C +++GKV+V KNPCLHPGD+RVL AVN+P+L HM+DCVVFPQKGHRPHPNECSGSDL
Sbjct: 745 DSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDL 804
Query: 536 DGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLISNA 715
DGD+YF+ WD LIPP Q MD PP +++ VTIEEV+EYFVNY++ND+LG+I+NA
Sbjct: 805 DGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANA 864
Query: 716 HSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRPMY 895
H+V AD + KA S CL+LAKL AVDF KTGVPAE+P L+ KEYPDFMEK D+ Y
Sbjct: 865 HTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTY 924
Query: 896 ISTGILGKLYRAAKD 940
IS ++G+L+R KD
Sbjct: 925 ISHNVIGQLFREVKD 939
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 365 bits (936), Expect = 2e-98
Identities = 186/328 (56%), Positives = 241/328 (73%), Gaps = 5/328 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFL-SLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQA 178
FE LQ+ L L MLT+RE A++ L +L + N+LI+ML GY P+ E YL MMLQA
Sbjct: 491 FEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNVEPYLSMMLQA 550
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKL-NYDGLNLVE- 352
+ + L++ +++ RIFVPKGR+L+GCLDET L+YG+V++R+T K +L + D +
Sbjct: 551 YHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDADQASFHRV 610
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSG 526
D T V+ GKVIVTKNPCLHPGDIRVLEAV EL K ++DC++FPQKG RPHPNECSG
Sbjct: 611 DETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGERPHPNECSG 670
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGD +FISWD+ LIP ++ MD R P K++H VT+EE+Q++F++YM+NDTLG I
Sbjct: 671 GDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFIDYMINDTLGAI 730
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH VHAD+EP KARS KCL+LA+L AVDFAKTG PAEMP +L PKE+PDFME+ D+
Sbjct: 731 STAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFPDFMERIDK 790
Query: 887 PMYISTGILGKLYRAAKDKLSENKKAVI 970
MYIS G+LGKLYR D + + +
Sbjct: 791 KMYISGGVLGKLYRGTLDSTRQQRSKFV 818
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 364 bits (934), Expect = 3e-98
Identities = 183/316 (57%), Positives = 228/316 (72%), Gaps = 3/316 (0%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
FE Q +A+ L+ +LTD KA + L LMS G+N N+L EML GY P E YL MMLQ
Sbjct: 632 FEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQT 691
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL--NLVE 352
F+ LL+ +TKSRIF+P GR +MGCLDET +L YG+VF++++ + + + N +
Sbjct: 692 FRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIG 751
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNECSGSD 532
V++G V V KNPCLHPGD+RVL+AVNIP L HM+DCVVFPQKG RPHPNECSGSD
Sbjct: 752 REHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSD 811
Query: 533 LDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLISN 712
LDGD+YF+ WD LIP Q MD PP++L+ VT E++QEYFVNYM+ND+LG+I+N
Sbjct: 812 LDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIAN 871
Query: 713 AHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRPM 892
AH+ ADKE KARS CLELAKL AVDF KTGVPA +P L+ KE+PDFMEK DRP
Sbjct: 872 AHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPS 931
Query: 893 YISTGILGKLYRAAKD 940
Y S ++GKL+RA KD
Sbjct: 932 YESNKVIGKLFRAVKD 947
>gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 363 bits (933), Expect = 4e-98
Identities = 178/315 (56%), Positives = 232/315 (73%), Gaps = 4/315 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQAF 181
FES+Q+D + + MLT++E A+ L + GD +ML GY PSSE YL+M+L+A
Sbjct: 42 FESMQQDDMHESDGMLTNKEAALSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAH 101
Query: 182 KDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLV--ED 355
+ L +T+ +I V KGRVL+GCLDET L YG+V+IR+TK + Y +D
Sbjct: 102 RANRLTDIRTRCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDD 161
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSGS 529
T V+ GKV +TKNPCLHPGD+RVLEAV P L + +IDCVVFPQ+G RPHPNECSG
Sbjct: 162 GKTAVIVGKVAITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGG 221
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDL+FI+WD++LIP DA MD P ++H+VT+EE+Q++FV+YM+NDTLG IS
Sbjct: 222 DLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAIS 281
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
AH +HAD++PLKARSP+C++LA L AVDFAKTG PAEMP +L P+E+PDFME+ +RP
Sbjct: 282 TAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERP 341
Query: 890 MYISTGILGKLYRAA 934
MY+S G+LGKLYRAA
Sbjct: 342 MYVSNGVLGKLYRAA 356
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 363 bits (933), Expect = 4e-98
Identities = 177/317 (55%), Positives = 233/317 (73%), Gaps = 4/317 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
FE QR+A+ L+ MLTD +A + L LMS G+N N+L EML GY P +E +L MMLQ
Sbjct: 634 FERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQT 693
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVED- 355
F+ LL+ +TK+RIF+P GR +MGCLDET +L +G+VF++ + + + YD ++ +
Sbjct: 694 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSER 753
Query: 356 --SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNECSGS 529
++KG V+V KNPCLHPGD+R+L+AV++P L HM+DCVVFPQKG RPHPNECSGS
Sbjct: 754 GRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGS 813
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGD+YF+ WD LIP Q + MD PP +L+H VTIEEV+EYF NY++ND+LG+I+
Sbjct: 814 DLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIA 873
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
NAH+ HADKE LKA S C+ELA+ AVDF KTGVPAE+P +L +EYPDFMEK D+P
Sbjct: 874 NAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKP 933
Query: 890 MYISTGILGKLYRAAKD 940
Y S ++GKL+R KD
Sbjct: 934 SYESRNVIGKLFREVKD 950
>ref|NP_001183867.1| RNA-dependent DNA polymerase [Zea mays] gi|89473792|gb|ABD72708.1|
RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase
[Zea mays] gi|414586834|tpg|DAA37405.1| TPA: mediator of
paramutation1 [Zea mays]
Length = 1127
Score = 363 bits (933), Expect = 4e-98
Identities = 178/315 (56%), Positives = 232/315 (73%), Gaps = 4/315 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQAF 181
FES+Q+D + + MLT++E A+ L + GD +ML GY PSSE YL+M+L+A
Sbjct: 644 FESMQQDDMHESDGMLTNKEAALSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAH 703
Query: 182 KDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLV--ED 355
+ L +T+ +I V KGRVL+GCLDET L YG+V+IR+TK + Y +D
Sbjct: 704 RANRLTDIRTRCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDD 763
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSGS 529
T V+ GKV +TKNPCLHPGD+RVLEAV P L + +IDCVVFPQ+G RPHPNECSG
Sbjct: 764 GKTAVIVGKVAITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGG 823
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDL+FI+WD++LIP DA MD P ++H+VT+EE+Q++FV+YM+NDTLG IS
Sbjct: 824 DLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAIS 883
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
AH +HAD++PLKARSP+C++LA L AVDFAKTG PAEMP +L P+E+PDFME+ +RP
Sbjct: 884 TAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERP 943
Query: 890 MYISTGILGKLYRAA 934
MY+S G+LGKLYRAA
Sbjct: 944 MYVSNGVLGKLYRAA 958
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 362 bits (930), Expect = 9e-98
Identities = 181/328 (55%), Positives = 238/328 (72%), Gaps = 5/328 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
F +L R+ LL L M T+RE A++ L ++ D+ N+L++ML GY P++E YL MM+Q+
Sbjct: 639 FLALLREQLLLLGKMRTNREAALNVLENLNGSDSSNILVKMLLQGYEPNAEPYLSMMIQS 698
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVE-- 352
+ + L KT+ RIFVPKG+VL+GCLDET L YG+V++R+T K +L +
Sbjct: 699 YYENQLSDLKTRCRIFVPKGKVLIGCLDETGILEYGQVYVRLTMKKAELEAGNQSFFRKV 758
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKH--MIDCVVFPQKGHRPHPNECSG 526
D +T ++ GKV+VTKNPCLHPGD+RVLEAV +L+ ++DC+VFPQKG RPHPNECSG
Sbjct: 759 DDETSIVVGKVVVTKNPCLHPGDVRVLEAVYDAKLEEEGLVDCLVFPQKGERPHPNECSG 818
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGDL+FISWD LIPP A MD I R P ++H VT+EE+Q++FV+YM+NDTLG I
Sbjct: 819 GDLDGDLFFISWDTNLIPPRTTAPMDYIGRRPRIMDHDVTLEEIQKFFVDYMINDTLGGI 878
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH +HAD+EP KA S CL+LA L AVDFAKTG PAEMP +L P++YPDFME+ DR
Sbjct: 879 STAHLIHADREPEKAFSENCLQLATLHSMAVDFAKTGAPAEMPRALRPRDYPDFMERLDR 938
Query: 887 PMYISTGILGKLYRAAKDKLSENKKAVI 970
PMY+S G LGKLYRA + S+ ++
Sbjct: 939 PMYVSNGALGKLYRATVESESQGSSNLV 966
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 362 bits (930), Expect = 9e-98
Identities = 183/328 (55%), Positives = 235/328 (71%), Gaps = 5/328 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYLMMMLQA 178
FE+LQ++ L L+ MLTD++ A++ L D NN+L++ML+ GY P+ E YL MMLQA
Sbjct: 641 FEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQA 700
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVE-- 352
+++ RIFVPKGR+L+GCLDET LNYG+V+ +T K++L N
Sbjct: 701 HYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTI 760
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSG 526
D +L GKV+VTKNPCLHPGD+RVLEA+ EL K ++DC++FPQKG RPH NECSG
Sbjct: 761 DETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSG 820
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGDLYFISWDE LIPP +A MD R P ++H V +EE+Q++FV+YM+NDTLG I
Sbjct: 821 GDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAI 880
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH VHAD+EP KA S KCLELA L AVDFAKTG PAEMP L P+E+PDFME+ D+
Sbjct: 881 STAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDK 940
Query: 887 PMYISTGILGKLYRAAKDKLSENKKAVI 970
PMYIS+ +LGKLYRAA + + + ++
Sbjct: 941 PMYISSNVLGKLYRAAVKSIEQERSRLV 968
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 362 bits (929), Expect = 1e-97
Identities = 181/328 (55%), Positives = 236/328 (71%), Gaps = 5/328 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYLMMMLQA 178
FE+LQ++ L L M DR A+ L +S D NN+L+++L GY P+ E YL MMLQA
Sbjct: 644 FEALQQEQLDLLGRMRKDRNVALSSLEKLSGADSNNILVKLLLQGYEPNLEPYLSMMLQA 703
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVT--KIKTKLNYDGLNLVE 352
+ +L K++ R++VPKGR+L+GCLDET +LNYG+V++R+T K + ++ +
Sbjct: 704 HYEHHLADLKSRCRMYVPKGRILVGCLDETGTLNYGQVYLRITMTKAEQEMGHQSFFQRV 763
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSG 526
D TC++ GKV+VTKNPCLHPGDIRVLEAV L K+M+DC++FPQKG RPHPNECSG
Sbjct: 764 DEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVGLEEKNMVDCILFPQKGERPHPNECSG 823
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGDL+FISWD+ LIPP MD R P ++H VT+EE+Q++FV+YM+ND LG I
Sbjct: 824 GDLDGDLFFISWDKSLIPPTTVPPMDYSARRPRNMDHDVTLEEIQKFFVDYMINDNLGAI 883
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH VH+D EP KA S KCLELA L AVDFAKTG PAE+ + L PKE+PDFME+ +R
Sbjct: 884 STAHLVHSDHEPEKAMSKKCLELADLHSMAVDFAKTGAPAELSWILKPKEFPDFMERVER 943
Query: 887 PMYISTGILGKLYRAAKDKLSENKKAVI 970
PMYIS G LGKLYRA + + + + V+
Sbjct: 944 PMYISNGALGKLYRAIRSSVVQEQTIVV 971
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 362 bits (928), Expect = 2e-97
Identities = 186/315 (59%), Positives = 232/315 (73%), Gaps = 5/315 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFL-SLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQA 178
FE+LQ++ L L MLT+RE A+D L SL + N+L++ML GY P+ E YL MML A
Sbjct: 649 FETLQQEQLHLLGQMLTNREAALDVLQSLCGADSQNILVKMLLQGYEPNVEPYLSMMLLA 708
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVE-- 352
L K + RI+VPKG+VL+GCLDETA+LNYG+V++R++ K +L + N
Sbjct: 709 NHVSLLSDLKCRCRIYVPKGQVLVGCLDETATLNYGQVYVRLSIKKAELEHADQNFFHKV 768
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPEL--KHMIDCVVFPQKGHRPHPNECSG 526
D T ++ GKV+VTKNPCLHPGD+RVLEAV EL K ++DC+VFPQKG RPHPNECSG
Sbjct: 769 DEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYEAELEDKGLVDCLVFPQKGERPHPNECSG 828
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGD +FISWD+ LIP DA MD P ++H VT+EE+Q++FV+YM+NDTLG I
Sbjct: 829 GDLDGDQFFISWDKDLIPCQTDAPMDYTGSRPRIMDHEVTLEEIQKFFVDYMINDTLGAI 888
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH VHAD+EP KARS KCLELA L AVDFAKTG PAEMP SL P+E+PDFM++ D+
Sbjct: 889 STAHLVHADREPDKARSEKCLELATLHSMAVDFAKTGAPAEMPRSLKPREFPDFMQRVDK 948
Query: 887 PMYISTGILGKLYRA 931
PMY S G+LGKLYRA
Sbjct: 949 PMYASLGVLGKLYRA 963
>ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 362 bits (928), Expect = 2e-97
Identities = 180/322 (55%), Positives = 233/322 (72%), Gaps = 4/322 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDNNMLIEMLSSGYCPSSEQYLMMMLQAF 181
FE +Q+D + L+ MLT++E A+ L + S + +ML GY P SE YL+M+L+A
Sbjct: 640 FELMQQDDMCELDEMLTNKEIALSVLGKIGSAETKTAADMLLQGYKPISEPYLLMILKAH 699
Query: 182 KDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKI--KTKLNYDGLNLVED 355
+D L ++K +I VPKGRVL+GCLDET L YG+V+IR+TK + K N +D
Sbjct: 700 QDNRLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITKNNKEQKENEQPYFCKDD 759
Query: 356 SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELK--HMIDCVVFPQKGHRPHPNECSGS 529
T L GKV V+KNPCLHPGD+RVLEAV EL ++DCVVFPQ+G RPHPNECSG
Sbjct: 760 GKTVTLVGKVAVSKNPCLHPGDVRVLEAVCDLELHATKLVDCVVFPQRGERPHPNECSGG 819
Query: 530 DLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLIS 709
DLDGDLYF++WD+RLIP D MD P ++H VT+EE+Q++ VNYML+D+LG IS
Sbjct: 820 DLDGDLYFVTWDDRLIPEKADTPMDYTAARPRIMDHVVTLEEIQQHVVNYMLSDSLGAIS 879
Query: 710 NAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDRP 889
NAH +HAD++P+KARSP+CL LA L AVDFAKTG PAE+P SL P+E+PDFME+ D+P
Sbjct: 880 NAHLIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELPRSLRPREFPDFMERWDKP 939
Query: 890 MYISTGILGKLYRAAKDKLSEN 955
MYISTG+LGKLYRAA ++ +
Sbjct: 940 MYISTGVLGKLYRAAVSRMESS 961
>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 361 bits (927), Expect = 2e-97
Identities = 181/322 (56%), Positives = 231/322 (71%), Gaps = 5/322 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYLMMMLQA 178
F+ Q +A+ L+ +L D KA + L LMS G+N N+L EML+ GY P +E +L MMLQ
Sbjct: 313 FKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQT 372
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGLNLVEDS 358
F+ LL +T++RIF+PKGR +MGCLDE+ +L YG+VF++ T + Y+ + DS
Sbjct: 373 FRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHFNDS 432
Query: 359 DTC----VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNECSG 526
+ +LKG V+V KNPCLHPGDIRVL+AV++P L HM+DCVVFPQKG RPHPNECSG
Sbjct: 433 GSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSG 492
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
SDLDGD+YF+ WD LIPP Q MD P +L+H VTIEEV+EYF NYM+ND LG+I
Sbjct: 493 SDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVI 552
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
+NAH V AD+EP A S C+ELA+L AVDF KTGVPAE+P L PKEYPDFMEK D+
Sbjct: 553 ANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDK 612
Query: 887 PMYISTGILGKLYRAAKDKLSE 952
Y S ++GKL+R KDK ++
Sbjct: 613 TTYHSEKVIGKLFREVKDKTTQ 634
>ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutrema salsugineum]
gi|557097970|gb|ESQ38406.1| hypothetical protein
EUTSA_v10028370mg [Eutrema salsugineum]
Length = 1124
Score = 361 bits (926), Expect = 3e-97
Identities = 178/324 (54%), Positives = 234/324 (72%), Gaps = 5/324 (1%)
Frame = +2
Query: 2 FESLQRDALLHLELMLTDREKAIDFLSLMSS-GDNNMLIEMLSSGYCPSSEQYLMMMLQA 178
FE++QR L L ML DR+ A++ L +S G N+L++ML GY PSSE YL+MML+
Sbjct: 647 FEAMQRGHLSMLGNMLEDRDAALNVLQKLSGEGSKNLLVKMLLLGYAPSSEPYLLMMLRV 706
Query: 179 FKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNY--DGLNLVE 352
+ L + K++ RI VPKGR+L+GC+DE L YG+V++RVT K +L G
Sbjct: 707 HHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELESREQGYFHKI 766
Query: 353 DSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIP--ELKHMIDCVVFPQKGHRPHPNECSG 526
D +T V+ GKV+VTKNPCLHPGDIRVL+A+ E K +DC+VFPQKG RPHPNECSG
Sbjct: 767 DEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEISFEQKGFLDCIVFPQKGERPHPNECSG 826
Query: 527 SDLDGDLYFISWDERLIPPFQDAAMDCIDRPPSKLNHSVTIEEVQEYFVNYMLNDTLGLI 706
DLDGD +F+SWDE+LIP D MD P ++H VT+EE+ ++FV+YM++DTLG+I
Sbjct: 827 GDLDGDQFFVSWDEKLIPSQMDPPMDYAGSRPRIMDHDVTLEEIHKFFVDYMISDTLGVI 886
Query: 707 SNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFPKEYPDFMEKNDR 886
S AH +HAD++P KARS KCLELA L +AVDFAKTG PAEMPY+L P+E+PDF+E+ ++
Sbjct: 887 STAHLIHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEK 946
Query: 887 PMYISTGILGKLYRAAKDKLSENK 958
PMYIS + GKLYRA K L++ K
Sbjct: 947 PMYISESVFGKLYRAVKRSLAQRK 970