BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00027597
         (1297 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou...    48   4e-06
gb|ABE77191.1| putative non-LTR retroelement reverse transcripta...    58   1e-05

>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
           gi|31430304|gb|AAP52238.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 764

 Score = 47.8 bits (112), Expect(2) = 4e-06
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 975 HKVPWDICCRPKSMGGLGIIGIKQHGLALFYKWIIKSLEGNED 847
           H + W+  CRPK  GGLG I  ++  +AL  KWI +   G ED
Sbjct: 374 HMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKED 416



 Score = 31.2 bits (69), Expect(2) = 4e-06
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = -1

Query: 736 GFIPIKA-----IWKSWNEINKYLDWNHPPSISNIDKTNIWWHPMLENAPLRT 593
           GF   KA      WK  +E+ K++D      + N   TN W    +   PL+T
Sbjct: 432 GFFQSKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGETPLKT 484


>gb|ABE77191.1| putative non-LTR retroelement reverse transcriptase [Sorghum bicolor]
          Length = 1505

 Score = 57.8 bits (138), Expect = 1e-05
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
 Frame = -2

Query: 1107 KKKINCWDIYY*S------------RCRDTCIMSCIGVPKSLISCSESKA-----KGHKD 979
            K+K++CW + Y S                  +MS   +PK +I   +        +G  D
Sbjct: 1289 KQKLSCWKVKYLSYGGRLVLLNSVLSSLPMFMMSFFEIPKGVIKNLDHYRSRFFWQGSSD 1348

Query: 978  SHK---VPWDICCRPKSMGGLGIIGIKQHGLALFYKWIIKSLEGNEDWKILFRER----- 823
             HK     WDI CRPK  GGLGI+ ++     L  KW++  L     W+ L R +     
Sbjct: 1349 KHKYRLAKWDIICRPKDQGGLGILNLQLQNKCLLAKWLVNLLNTEGIWQSLLRNKYLSSK 1408

Query: 822  ----ITHCKYNNHYW 790
                +T  +  +H+W
Sbjct: 1409 NLSQVTAKRNVSHFW 1423