BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00025554
         (601 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_176202.1| response regulator 3 [Arabidopsis thaliana] gi|...    67   4e-09
ref|XP_002886648.1| predicted protein [Arabidopsis lyrata subsp....    67   5e-09
gb|AFU91979.1| response regulator 1 protein [Pinus pinaster]           64   2e-08
ref|NP_172517.1| two-component response regulator ARR4 [Arabidop...    61   3e-07
gb|ACN62086.1| response regulator 1 [Pinus pinea]                      61   3e-07
ref|XP_006357275.1| PREDICTED: LOW QUALITY PROTEIN: two-componen...    60   4e-07
ref|XP_004238726.1| PREDICTED: LOW QUALITY PROTEIN: two-componen...    60   4e-07
ref|XP_002892573.1| hypothetical protein ARALYDRAFT_888316 [Arab...    60   4e-07
ref|XP_006392216.1| hypothetical protein EUTSA_v10023662mg [Eutr...    60   5e-07
gb|EOY20576.1| Two-component response regulator ARR5 [Theobroma ...    59   8e-07
ref|XP_006417463.1| hypothetical protein EUTSA_v10008575mg [Eutr...    59   1e-06
ref|XP_006304102.1| hypothetical protein CARUB_v10010030mg [Caps...    59   1e-06
dbj|BAM74645.1| type-A response regulator [Torenia fournieri]          59   1e-06
ref|XP_006645383.1| PREDICTED: two-component response regulator ...    59   1e-06
ref|XP_006854776.1| hypothetical protein AMTR_s00063p00116400 [A...    58   2e-06
ref|XP_006470938.1| PREDICTED: two-component response regulator ...    58   2e-06
emb|CBX43986.1| putative A-type response regulator 4 [Populus x ...    58   2e-06
ref|XP_006420721.1| hypothetical protein CICLE_v10005987mg [Citr...    57   3e-06
ref|XP_004303597.1| PREDICTED: two-component response regulator ...    57   3e-06
gb|AGH13202.1| cytokinin response regulator 5 [Nicotiana attenuata]    57   4e-06

>ref|NP_176202.1| response regulator 3 [Arabidopsis thaliana]
           gi|51316126|sp|Q9ZWS9.1|ARR3_ARATH RecName:
           Full=Two-component response regulator ARR3
           gi|5080824|gb|AAD39333.1|AC007258_22 response regulator
           3 [Arabidopsis thaliana] gi|3953595|dbj|BAA34725.1|
           response regulator 3 [Arabidopsis thaliana]
           gi|89111918|gb|ABD60731.1| At1g59940 [Arabidopsis
           thaliana] gi|110737841|dbj|BAF00859.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332195521|gb|AEE33642.1| response regulator 3
           [Arabidopsis thaliana]
          Length = 231

 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQG-----SPTPPPPSLKRKSMSED 436
           RCLEEGAE+FLLKPVKLADVKRL+S++ + + K+ ++G     +  PPPP L   S  E 
Sbjct: 134 RCLEEGAEDFLLKPVKLADVKRLRSYLTRDV-KVAAEGNKRKLTTPPPPPPLSATSSMES 192

Query: 435 SDNT 424
           SD+T
Sbjct: 193 SDST 196


>ref|XP_002886648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297332489|gb|EFH62907.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 229

 Score = 66.6 bits (161), Expect = 5e-09
 Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGS----PTPPPPSLKRKSMSEDS 433
           RCLEEGAE+FLLKPVKLADVKRL++++ K + K+ + G+     TPPPP L   S  E  
Sbjct: 134 RCLEEGAEDFLLKPVKLADVKRLRNYLTKDV-KVAADGNKRKLTTPPPPPLSSTSSMESL 192

Query: 432 DNT 424
           D+T
Sbjct: 193 DST 195


>gb|AFU91979.1| response regulator 1 protein [Pinus pinaster]
          Length = 184

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 37/78 (47%), Positives = 52/78 (66%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSEDSDNTP 421
           RC+ EGA+EFLLKPV+L+DVK+L+SHI   L+K  S+   +  P + KRK+M++      
Sbjct: 116 RCMSEGAQEFLLKPVQLSDVKKLRSHI---LNKGRSRDQQSTSPSNNKRKTMTDSL---- 168

Query: 420 LPSQSSERRPRVGELSVA 367
             S  +ERRPR   L+VA
Sbjct: 169 --SPPAERRPRPSGLTVA 184


>ref|NP_172517.1| two-component response regulator ARR4 [Arabidopsis thaliana]
           gi|51315817|sp|O82798.1|ARR4_ARATH RecName:
           Full=Two-component response regulator ARR4; AltName:
           Full=Response regulator 1
           gi|5091539|gb|AAD39568.1|AC007067_8 T10O24.8
           [Arabidopsis thaliana] gi|3273196|dbj|BAA31143.1|
           responce regulator1 [Arabidopsis thaliana]
           gi|3323583|gb|AAC26636.1| two-component response
           regulator homolog [Arabidopsis thaliana]
           gi|3953597|dbj|BAA34726.1| response regulator 4
           [Arabidopsis thaliana] gi|87116590|gb|ABD19659.1|
           At1g10470 [Arabidopsis thaliana]
           gi|110740750|dbj|BAE98474.1| putative response regulator
           3 [Arabidopsis thaliana] gi|332190462|gb|AEE28583.1|
           two-component response regulator ARR4 [Arabidopsis
           thaliana]
          Length = 259

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTP----------PPPSLKRK 451
           RCLEEGA++FLLKPVKLADVKRL+SH+ K +   +      P          PPPS    
Sbjct: 135 RCLEEGAQDFLLKPVKLADVKRLRSHLTKDVKLSNGNKRKLPEDSSSVNSSLPPPSPPLT 194

Query: 450 SMSEDSDNTPLPSQSSERRPRVGELSV 370
              E S    + ++SS+  P +  + +
Sbjct: 195 ISPESSPPLTVSTESSDSSPPLSPVEI 221


>gb|ACN62086.1| response regulator 1 [Pinus pinea]
          Length = 184

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 37/78 (47%), Positives = 51/78 (65%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSEDSDNTP 421
           RC+ EGAEEFLLKPV+L+DVK+L+SHI   L+K  S+   +    + KRK+M++      
Sbjct: 116 RCMSEGAEEFLLKPVQLSDVKKLRSHI---LNKGGSRDQQSTSLSNNKRKTMTDSL---- 168

Query: 420 LPSQSSERRPRVGELSVA 367
             S  +ERRPR   L+VA
Sbjct: 169 --SPPAERRPRPSGLTVA 184


>ref|XP_006357275.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
           ARR4-like [Solanum tuberosum]
          Length = 263

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIV---------KGLS--KIHSQGSPTPPPPSLKR 454
           RCLEEGAE+FLLKPVKLADVKRLKS++          KG++  K+    S     P+L  
Sbjct: 147 RCLEEGAEDFLLKPVKLADVKRLKSYMFNEDRFRGEEKGMNKRKLPESSSDDSSTPTLSP 206

Query: 453 KSMSEDSDNTPL-PSQSSERRPRVGELSVA 367
              S D  +TP  PS SS   P+    S++
Sbjct: 207 SPSSLDLSSTPSPPSTSSPSSPKAFSSSLS 236


>ref|XP_004238726.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator
           ARR4-like [Solanum lycopersicum]
          Length = 248

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIV---------KGLS--KIHSQGSPTPPPPSLKR 454
           RCLEEGAE+FLLKPVKLADVKRLKS++          KG++  K+    S     P+L  
Sbjct: 129 RCLEEGAEDFLLKPVKLADVKRLKSYMFNEDRFRGEEKGMNKRKLPESSSDDSSTPTLSP 188

Query: 453 KSMSEDSDNTPL-PSQSSERRPRVGELSVA 367
              S D  +TP  PS SS   P+    S++
Sbjct: 189 SPSSLDLSSTPSPPSTSSPSSPKAFSSSLS 218


>ref|XP_002892573.1| hypothetical protein ARALYDRAFT_888316 [Arabidopsis lyrata subsp.
           lyrata] gi|297338415|gb|EFH68832.1| hypothetical protein
           ARALYDRAFT_888316 [Arabidopsis lyrata subsp. lyrata]
          Length = 258

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTP----------PPPSLKRK 451
           RCLEEGA++FLLKPVKLADVKRL++H+ K +   +      P          PPPS    
Sbjct: 132 RCLEEGAQDFLLKPVKLADVKRLRNHLTKDVKLSNGNKRKLPDDSDSVNSSLPPPSPPLT 191

Query: 450 SMSEDSDNTPLPSQSSERRPRVGELSV 370
              E S    + ++SS+  P++  + +
Sbjct: 192 ISPESSPPLTISTESSDSSPQLSPVEM 218


>ref|XP_006392216.1| hypothetical protein EUTSA_v10023662mg [Eutrema salsugineum]
           gi|557088722|gb|ESQ29502.1| hypothetical protein
           EUTSA_v10023662mg [Eutrema salsugineum]
          Length = 236

 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 31/72 (43%), Positives = 42/72 (58%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSEDSDNTP 421
           RCLEEGAE+FLLKPVKLADVKRL++++ K +          PP PS    +      ++P
Sbjct: 134 RCLEEGAEDFLLKPVKLADVKRLRNYLTKDVKVADGNKPIAPPSPSSTTTTADATLPSSP 193

Query: 420 LPSQSSERRPRV 385
           +   S+   P V
Sbjct: 194 VEFVSTSPSPPV 205


>gb|EOY20576.1| Two-component response regulator ARR5 [Theobroma cacao]
          Length = 228

 Score = 59.3 bits (142), Expect = 8e-07
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGL------SKIHSQGSPTPPPPSLKRKSMSE 439
           RCLEEGAEEFL+KPVKL+DVKRLK  I++G       S+++ +       P L   S+S 
Sbjct: 116 RCLEEGAEEFLVKPVKLSDVKRLKDFIMRGETEENGGSRVNKRKLEDDGHPPLSSSSLSS 175

Query: 438 DSDNTPLPSQSS 403
            S +   PS  S
Sbjct: 176 SSSSASAPSSPS 187


>ref|XP_006417463.1| hypothetical protein EUTSA_v10008575mg [Eutrema salsugineum]
           gi|557095234|gb|ESQ35816.1| hypothetical protein
           EUTSA_v10008575mg [Eutrema salsugineum]
          Length = 250

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHS------------QGSPTPPPPSLK 457
           RCLEEGAE+FLLKPVKLADVKRL++++ K +   +               S  PPPPSL 
Sbjct: 131 RCLEEGAEDFLLKPVKLADVKRLRNYLTKDVKLSNGNKRKLPEDSDSVHASLPPPPPSLT 190

Query: 456 RKSMSEDS 433
               S DS
Sbjct: 191 LSPDSSDS 198


>ref|XP_006304102.1| hypothetical protein CARUB_v10010030mg [Capsella rubella]
           gi|482572813|gb|EOA37000.1| hypothetical protein
           CARUB_v10010030mg [Capsella rubella]
          Length = 265

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 17/77 (22%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIH---------SQGSPTPPPPSLKRKS 448
           RCLEEGA++FLLKPVKLADVKRL+SH+ K L+  +            S  PPP ++  +S
Sbjct: 140 RCLEEGAQDFLLKPVKLADVKRLRSHLSKDLNLSNGGNKRKLPEDSDSVIPPPLTISPES 199

Query: 447 MS--------EDSDNTP 421
            S        E SD++P
Sbjct: 200 SSSPPLTISPESSDSSP 216


>dbj|BAM74645.1| type-A response regulator [Torenia fournieri]
          Length = 213

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 33/66 (50%), Positives = 41/66 (62%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSEDSDNTP 421
           RCLEEGAEEFL+KPVKL+DVKRL+  ++KG  K     +        KRKS   D D++ 
Sbjct: 121 RCLEEGAEEFLVKPVKLSDVKRLRDFVIKGKMK----KTNNEKQRCYKRKSQQLDDDDSC 176

Query: 420 LPSQSS 403
             S SS
Sbjct: 177 TDSNSS 182


>ref|XP_006645383.1| PREDICTED: two-component response regulator ARR8-like [Oryza
           brachyantha]
          Length = 225

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPP 469
           RCLE+GAEEF LKPVKLAD+K+LKSH++K   +   Q   TPPP
Sbjct: 119 RCLEDGAEEFFLKPVKLADMKKLKSHLLK---RKQQQPDKTPPP 159


>ref|XP_006854776.1| hypothetical protein AMTR_s00063p00116400 [Amborella trichopoda]
           gi|548858480|gb|ERN16243.1| hypothetical protein
           AMTR_s00063p00116400 [Amborella trichopoda]
          Length = 196

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSL------KRKSMSE 439
           RCLEEGAEEF LKPV+L+D+ +LK H++K    I    +PT   P        KRK  + 
Sbjct: 118 RCLEEGAEEFFLKPVQLSDMIKLKPHLMKSAKSI----NPTTLSPQKSSSNPNKRKPNAM 173

Query: 438 DSDNTPLPSQSSERRPRVGELSVA 367
            +++ PL  Q   RRPR   L+V+
Sbjct: 174 STESAPLSPQ--RRRPRYNGLTVS 195


>ref|XP_006470938.1| PREDICTED: two-component response regulator ARR9-like [Citrus
           sinensis]
          Length = 187

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSE 439
           RCLEEGAEEF LKPV+LADV +LK H++KG+SK  ++    P   + KRK + E
Sbjct: 110 RCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEINE----PNNINNKRKGLEE 159


>emb|CBX43986.1| putative A-type response regulator 4 [Populus x canadensis]
          Length = 193

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/54 (55%), Positives = 36/54 (66%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSE 439
           RCLEEGAEEF LKPV+L+DV +L+ H++KG  K   Q       PS KRK M E
Sbjct: 125 RCLEEGAEEFFLKPVQLSDVNKLRPHLMKGRCKEEDQ-------PSNKRKGMEE 171


>ref|XP_006420721.1| hypothetical protein CICLE_v10005987mg [Citrus clementina]
           gi|557522594|gb|ESR33961.1| hypothetical protein
           CICLE_v10005987mg [Citrus clementina]
          Length = 187

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 30/54 (55%), Positives = 38/54 (70%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSE 439
           RCLEEGAEEF LKPV+LADV +LK H++KG+SK   +    P   + KRK + E
Sbjct: 110 RCLEEGAEEFFLKPVQLADVNKLKPHLMKGISKEIKE----PNNINNKRKGLEE 159


>ref|XP_004303597.1| PREDICTED: two-component response regulator ARR9-like [Fragaria
           vesca subsp. vesca]
          Length = 225

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 36/88 (40%), Positives = 43/88 (48%), Gaps = 34/88 (38%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPT------------------- 478
           RCLEEGAEEF LKPV+L+D+ RL+  I+K  SK H+Q  PT                   
Sbjct: 119 RCLEEGAEEFFLKPVRLSDLNRLRPRIIKTKSKDHNQEKPTNFEEQASQKLEISKDQQEQ 178

Query: 477 --------------PPPPSL-KRKSMSE 439
                         PPPPS  KRK+M E
Sbjct: 179 EEEELLHHQLQLQQPPPPSTNKRKTMEE 206


>gb|AGH13202.1| cytokinin response regulator 5 [Nicotiana attenuata]
          Length = 201

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 33/63 (52%), Positives = 39/63 (61%)
 Frame = -2

Query: 600 RCLEEGAEEFLLKPVKLADVKRLKSHIVKGLSKIHSQGSPTPPPPSLKRKSMSEDSDNTP 421
           RCLEEGAEEFLLKPVKL+DVKRLK+ I++G               S KRK   +DS    
Sbjct: 109 RCLEEGAEEFLLKPVKLSDVKRLKNFILRGEGDNEETDKRIKEGSSRKRK-FQDDSLTQS 167

Query: 420 LPS 412
           +PS
Sbjct: 168 VPS 170