BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00025402
         (723 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006854426.1| hypothetical protein AMTR_s00039p00210570 [A...   122   9e-26
ref|XP_006847845.1| hypothetical protein AMTR_s00029p00062590 [A...   122   1e-25
ref|XP_006406821.1| hypothetical protein EUTSA_v10022175mg [Eutr...   120   4e-25
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   120   4e-25
ref|NP_188283.1| pentatricopeptide repeat-containing protein [Ar...   119   1e-24
ref|XP_002885157.1| pentatricopeptide repeat-containing protein ...   119   1e-24
ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containi...   117   3e-24
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   115   1e-23
ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containi...   115   1e-23
ref|XP_002515711.1| pentatricopeptide repeat-containing protein,...   114   2e-23
ref|XP_006297215.1| hypothetical protein CARUB_v10013224mg [Caps...   114   3e-23
ref|XP_006426947.1| hypothetical protein CICLE_v10027522mg, part...   113   5e-23
ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arab...   113   5e-23
ref|XP_006465624.1| PREDICTED: pentatricopeptide repeat-containi...   113   7e-23
gb|EXB74521.1| hypothetical protein L484_026217 [Morus notabilis]     112   2e-22
ref|XP_006413323.1| hypothetical protein EUTSA_v10024921mg [Eutr...   111   2e-22
ref|XP_006361605.1| PREDICTED: pentatricopeptide repeat-containi...   110   4e-22
ref|XP_001785140.1| predicted protein [Physcomitrella patens] gi...   110   4e-22
ref|XP_006494746.1| PREDICTED: pentatricopeptide repeat-containi...   110   5e-22
ref|XP_006428022.1| hypothetical protein CICLE_v10024954mg [Citr...   110   5e-22

>ref|XP_006854426.1| hypothetical protein AMTR_s00039p00210570 [Amborella trichopoda]
           gi|548858102|gb|ERN15893.1| hypothetical protein
           AMTR_s00039p00210570 [Amborella trichopoda]
          Length = 674

 Score =  122 bits (307), Expect = 9e-26
 Identities = 62/176 (35%), Positives = 105/176 (59%)
 Frame = +2

Query: 194 SIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVF 373
           SI++L+ +L   +  R L    + HA + + GF   + +   ++ VY  CN++ DAR VF
Sbjct: 77  SIDDLLAYLRHAIGLRSLQLARQAHALVWILGFAQNQFISVNLITVYSTCNKLSDARLVF 136

Query: 374 DEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANE 553
           D +QWKN F++N++I  Y +  + +E L LY  + +  VRPD FTF+   K+C  +  + 
Sbjct: 137 DTIQWKNIFLWNSIISAYVKYTVWDEPLILYDKLLNSDVRPDHFTFSSVLKICAELCDSL 196

Query: 554 VANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              +I    +K+ F SD+ +  ++I M  KC  L  AR+VFD+MP++++ SW+A+I
Sbjct: 197 RGEKIRVLMEKTGFCSDVVALNALIVMYCKCEWLTFARKVFDEMPDRNIASWNAMI 252


>ref|XP_006847845.1| hypothetical protein AMTR_s00029p00062590 [Amborella trichopoda]
           gi|548851150|gb|ERN09426.1| hypothetical protein
           AMTR_s00029p00062590 [Amborella trichopoda]
          Length = 625

 Score =  122 bits (306), Expect = 1e-25
 Identities = 57/168 (33%), Positives = 97/168 (57%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C   + L  G  +HA +   G     PL   ++ +Y  C  ++DA+ VFD +Q KN 
Sbjct: 51  LQACTKTKSLCTGRVLHALLFFNGHQQNTPLQTNLINMYATCGNLLDAQLVFDRLQSKNV 110

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +N LI+G+ ++ L  E+L L++ M   G+ PD FTF F  K C  +   ++   I+  
Sbjct: 111 RSWNALIRGFIKHGLYREALILHSQMLGSGIEPDNFTFPFVLKACADLGDLQMGKSIHHQ 170

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
            ++SN+  D++ C +++ ML KC  L  A++VF+QM +K+++SW+A+I
Sbjct: 171 IERSNYKGDVYVCNALVAMLAKCGDLIEAQRVFNQMTQKNVVSWTAMI 218



 Score = 84.3 bits (207), Expect = 4e-14
 Identities = 46/168 (27%), Positives = 81/168 (48%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C +   L  G  +H  I    + G   + N ++A+   C  +++A+ VF++M  KN 
Sbjct: 152 LKACADLGDLQMGKSIHHQIERSNYKGDVYVCNALVAMLAKCGDLIEAQRVFNQMTQKNV 211

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +  +I GYA+     E+L L  +M   G+ P   T   A   C  ++A      I+  
Sbjct: 212 VSWTAMIAGYAQGGRAMEALDLLREMGKAGLSPKPVTLACALPACANLEAIWFGKEIHGH 271

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             K+    D++   ++  M  K   +  A +VFD+MP+KS++SW+ +I
Sbjct: 272 AIKTKCDDDLYVASALSDMYAKTHDMTYATKVFDKMPKKSVVSWNGMI 319



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 1/169 (0%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C N   +  G ++H H           + + +  +Y   + M  A  VFD+M  K+ 
Sbjct: 253 LPACANLEAIWFGKEIHGHAIKTKCDDDLYVASALSDMYAKTHDMTYATKVFDKMPKKSV 312

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVR-PDKFTFTFAAKVCGVVQANEVANRIYQ 574
             +N +I G  +N    ++L L+  M     R P+  T       C  + A      I+ 
Sbjct: 313 VSWNGMIAGCNQNGFSNKALDLFRKMVVTFPRKPNWVTLVNLLPSCAKLSALLHGKEIHG 372

Query: 575 DFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              K++   D   C ++I M  KC  L+ AR+VFD+MPE+ +++W+A+I
Sbjct: 373 FSVKNHIHWDTIVCNALIDMYSKCGSLELARRVFDRMPERDVITWTAMI 421



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 3/175 (1%)
 Frame = +2

Query: 206 LMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQ 385
           L++ L  C     LL G ++H             + N ++ +Y  C  +  AR VFD M 
Sbjct: 351 LVNLLPSCAKLSALLHGKEIHGFSVKNHIHWDTIVCNALIDMYSKCGSLELARRVFDRMP 410

Query: 386 WKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANR 565
            ++   +  +I GY  +   E+++ L++ M   GVRPD  TF      C      +   +
Sbjct: 411 ERDVITWTAMIAGYGMHGNGEKAVHLFSLMHQSGVRPDYVTFVGLLSSCSHAGLVDQGLK 470

Query: 566 IYQ--DFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMP-EKSMMSWSAII 721
           + +  + D    +   H  C I+ +LG+  RL+ A     ++P E   + W A++
Sbjct: 471 LIEIMEHDYGIHSRLEHQSC-IVDLLGRAGRLEEAFDYIKRIPVEPGPVVWGALL 524


>ref|XP_006406821.1| hypothetical protein EUTSA_v10022175mg [Eutrema salsugineum]
           gi|557107967|gb|ESQ48274.1| hypothetical protein
           EUTSA_v10022175mg [Eutrema salsugineum]
          Length = 655

 Score =  120 bits (301), Expect = 4e-25
 Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFT--GKKPLINKVLAVYVNCNRMVDARHVFDEMQWK 391
           L  C+    L+ G  +H H+  R  T      L+N +  +Y +CN +  ARHVFDE+   
Sbjct: 6   LKSCIRSENLILGQIIHQHLLKRSLTVTSSAVLVN-LTRLYASCNEVELARHVFDEIPHP 64

Query: 392 NT--FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANR 565
            T    ++ +I+ YA N  PE++L  Y  M   GVRP KFT+ FA K C  ++A E    
Sbjct: 65  RTNPIAWDVMIRAYASNGSPEKALDFYYKMLSSGVRPTKFTYPFALKACAGLRATEDGKL 124

Query: 566 IYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           I+     S+F +DM+ C +++    KC  L  A QVFD+MP++ +++W+A+I
Sbjct: 125 IHSHVKCSDFAADMYVCTALVDFYAKCGELDMAIQVFDEMPQRDIVAWNALI 176



 Score = 69.7 bits (169), Expect = 9e-10
 Identities = 43/156 (27%), Positives = 73/156 (46%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  VH +    GF     + N V++ Y     + DA   F E+  K+   YN+LI G  E
Sbjct: 328 GRCVHCYAIKAGFMLDLTVGNTVISFYAKHGSLCDAFRQFSEIGVKDIVSYNSLISGCLE 387

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           N   EESLRL+ DM   G++ +  T       C  + A    +  +       +  +   
Sbjct: 388 NYQAEESLRLFHDMKSSGIQTNITTLVGVLTACSHLAALGHGSSCHGYCVVHGYAINTTI 447

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           C +++ M  KC +L  A++VF+ M ++  +SW+ ++
Sbjct: 448 CNALMDMYTKCGKLDVAKRVFETMHKRDTVSWNTMM 483



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 4/171 (2%)
 Frame = +2

Query: 188 RVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARH 367
           + +I  L+  L  C +   L  G   H +  V G+     + N ++ +Y  C ++  A+ 
Sbjct: 407 QTNITTLVGVLTACSHLAALGHGSSCHGYCVVHGYAINTTICNALMDMYTKCGKLDVAKR 466

Query: 368 VFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQA 547
           VF+ M  ++T  +NT++ G   + L +E+L L+  M D GV  D+ TF      C     
Sbjct: 467 VFETMHKRDTVSWNTMMFGLGTHGLGKEALSLFDSMRDTGVNTDEVTFLAVLSACSHSGL 526

Query: 548 NEVANRIYQDFDKSNF----TSDMHSCCSIITMLGKCRRLQNARQVFDQMP 688
            +   +++    + +F      D ++C  I  +L +   L  A  + ++MP
Sbjct: 527 VDEGKQVFNSMARGDFEVIPRIDHYNC--IADLLARAGYLDEAYDLVNKMP 575



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C   R   +G  +H+H+    F     +   ++  Y  C  +  A  VFDEM  ++ 
Sbjct: 110 LKACAGLRATEDGKLIHSHVKCSDFAADMYVCTALVDFYAKCGELDMAIQVFDEMPQRDI 169

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDM-ADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQ 574
             +N LI G++ +    +   L+ DM    G+RP+  T        G   A      ++ 
Sbjct: 170 VAWNALISGFSLHCCLTDVAALFLDMRRSDGIRPNLSTIVGMFPALGRAGALREGKSVHA 229

Query: 575 DFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              ++ F++D+     I+ +  K + +  AR+VFD    K+ ++WSA+I
Sbjct: 230 YCTRNGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDTMKNEVTWSAMI 278


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  120 bits (301), Expect = 4e-25
 Identities = 58/168 (34%), Positives = 99/168 (58%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C+ R+ +  G ++HA I   G +    L  K++ +Y  CN + +A  +FD +  +N 
Sbjct: 8   LQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNL 67

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
           F++N +I+GYA N   E ++ LY  M D G+ PDKFTF F  K C  + A E   +I++D
Sbjct: 68  FLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKD 127

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             +S   SD+    ++I M  KC  +++ARQVFD++ E+ ++ W++++
Sbjct: 128 VIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSML 175



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 41/168 (24%), Positives = 79/168 (47%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C     + EG K+H  +   G      +   ++ +Y  C  +  AR VFD++  ++ 
Sbjct: 109 LKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDV 168

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +N+++  Y++N  P+ESL L   MA  G++P + TF  +               ++  
Sbjct: 169 VCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGY 228

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             +  F S+     +++ M  K   +  AR +F+ + EK ++SW+A+I
Sbjct: 229 SWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMI 276


>ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g16610 gi|11994615|dbj|BAB02752.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332642322|gb|AEE75843.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  119 bits (298), Expect = 1e-24
 Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFT-GKKPLINKVLAVYVNCNRMVDARHVFDEMQWK- 391
           L+ C+  R L+ G  +H H+  R  T     ++  +  +Y +CN +  ARHVFDE+    
Sbjct: 6   LETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPR 65

Query: 392 -NTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRI 568
            N   ++ +I+ YA N+  E++L LY  M + GVRP K+T+ F  K C  ++A +    I
Sbjct: 66  INPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLI 125

Query: 569 YQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           +   + S+F +DM+ C +++    KC  L+ A +VFD+MP++ M++W+A+I
Sbjct: 126 HSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMI 176



 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 44/156 (28%), Positives = 74/156 (47%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  VH +    GF     + N +++ Y     + DA   F E+  K+   YN+LI G   
Sbjct: 327 GRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVV 386

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           N  PEES RL+ +M   G+RPD  T       C  + A    +  +       +  +   
Sbjct: 387 NCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSI 446

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           C +++ M  KC +L  A++VFD M ++ ++SW+ ++
Sbjct: 447 CNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTML 482



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
 Frame = +2

Query: 188 RVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARH 367
           R  I  L+  L  C +   L  G   H +  V G+     + N ++ +Y  C ++  A+ 
Sbjct: 406 RPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKR 465

Query: 368 VFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQA 547
           VFD M  ++   +NT++ G+  + L +E+L L+  M + GV PD+ T       C     
Sbjct: 466 VFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGL 525

Query: 548 NEVANRIYQDFDKSNFT----SDMHSCCSIITMLGKCRRLQNARQVFDQMP 688
            +   +++    + +F      D ++C  +  +L +   L  A    ++MP
Sbjct: 526 VDEGKQLFNSMSRGDFNVIPRIDHYNC--MTDLLARAGYLDEAYDFVNKMP 574



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 13/244 (5%)
 Frame = +2

Query: 29  ILHNQAKIYSEVTCLHLRMLRNVGKSVLGKKLKPL--------WRKNHQSMSA----FTT 172
           +L N  ++Y+  +C  + + R+V   +   ++ P+        +  N  +  A    +  
Sbjct: 37  VLVNLTRLYA--SCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKM 94

Query: 173 LDNNQRVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRM 352
           L++  R +       L  C   R + +G  +H+H+    F     +   ++  Y  C  +
Sbjct: 95  LNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGEL 154

Query: 353 VDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMAD-QGVRPDKFTFTFAAKV 529
             A  VFDEM  ++   +N +I G++ +    + + L+ DM    G+ P+  T       
Sbjct: 155 EMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPA 214

Query: 530 CGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSW 709
            G   A      ++    +  F++D+     I+ +  K + +  AR+VFD   +K+ ++W
Sbjct: 215 LGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTW 274

Query: 710 SAII 721
           SA+I
Sbjct: 275 SAMI 278


>ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330997|gb|EFH61416.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 655

 Score =  119 bits (297), Expect = 1e-24
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFT-GKKPLINKVLAVYVNCNRMVDARHVFDEMQWK- 391
           L+ C+  R L+ G  +H H+  R  T     ++  +  +Y +CN +  ARHVFDE+    
Sbjct: 6   LESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPR 65

Query: 392 -NTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRI 568
            N   ++ +I+ Y  N   E++L LY  M + GVRP KFT+ F  K C  ++A E    I
Sbjct: 66  INPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLI 125

Query: 569 YQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           +     SNF +DM+ C +++    KC  L  A +VFD+MP++ +++W+A+I
Sbjct: 126 HSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMI 176



 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 45/156 (28%), Positives = 74/156 (47%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  VH +    GF     + N V++ Y     + DA   F E+  K+   YN+LI G  E
Sbjct: 327 GRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVE 386

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           N   EES RL+  M   G+RPD  T       C  + A    +  +     + +  +   
Sbjct: 387 NCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSI 446

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           C +++ M  KC +L  A++VFD M ++ ++SW+ ++
Sbjct: 447 CNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTML 482



 Score = 73.2 bits (178), Expect = 8e-11
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
 Frame = +2

Query: 188 RVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARH 367
           R  I  L+  L  C N   L  G   H +  V G+     + N ++ +Y  C ++  A+ 
Sbjct: 406 RPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMYTKCGKLYVAKR 465

Query: 368 VFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQA 547
           VFD M  ++   +NT++ G+  + L +E+L L+  M D GV PD+ T       C     
Sbjct: 466 VFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHPDEVTLLAILSACSHSGL 525

Query: 548 NEVANRIYQDFDKSNFT----SDMHSCCSIITMLGKCRRLQNARQVFDQMP 688
            +   +++    + +F      D ++C  +  +L +   L  A    ++MP
Sbjct: 526 VDEGKQLFNSMSRGDFNVIPRLDHYNC--MTDLLARAGYLDEAYDFVNKMP 574



 Score = 60.5 bits (145), Expect = 5e-07
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C   R + +G  +H+H+    F     +   ++  Y  C  +  A  VFDEM  ++ 
Sbjct: 110 LKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDI 169

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDM-ADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQ 574
             +N +I G++ +    + + L+ DM     + P+  T        G   A      ++ 
Sbjct: 170 VAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHG 229

Query: 575 DFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              +  F++D+     I+ +  K + +  AR+VFD   +K+ ++WSA+I
Sbjct: 230 YCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMI 278


>ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  117 bits (294), Expect = 3e-24
 Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 6/202 (2%)
 Frame = +2

Query: 134 WRKNHQSMSAFTTLDNNQRVSI----ENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGK 301
           + KN  S +AF   D   +  +      L+  L  C + + + EG  +H +  VR   G 
Sbjct: 237 YAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGY-AVRNSIGN 295

Query: 302 --KPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDM 475
             K   N ++ +Y NCN MVDAR +F+ ++WK+T  +N++I GYA N    ESLRL+  M
Sbjct: 296 YNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRM 355

Query: 476 ADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRL 655
           A  G  PD+ TF      C  + A      I+    K  F ++     +++ M  KC  L
Sbjct: 356 ALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSL 415

Query: 656 QNARQVFDQMPEKSMMSWSAII 721
             +R+VFD+MP+KS++SWSA++
Sbjct: 416 ACSRRVFDEMPDKSLVSWSAMV 437



 Score =  107 bits (268), Expect = 3e-21
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLIN-KVLAVYVNCNRMVDARHVFDEMQWKN 394
           L    N +   +G ++HAH+           +N K+ A Y  C  M  A  +FD +  KN
Sbjct: 66  LQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKN 125

Query: 395 TFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQ 574
           +F++N +I+GYA N LP +SL LY +M   G R D FT+ F  K CG +   E+  R++ 
Sbjct: 126 SFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHS 185

Query: 575 DFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           +       SD++   S++ M  K   +  AR VFD+M E+ + SW+ +I
Sbjct: 186 EVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMI 234



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C +  L+  G +VH+ + V G      + N +LA+Y     M  AR VFD M  ++ 
Sbjct: 168 LKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDL 227

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +NT+I GYA+N     +  ++  M   G+  D  T       C  ++A +    I+  
Sbjct: 228 TSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGY 287

Query: 578 FDKSNFTS-DMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             +++  + +     S+I M   C  + +AR++F+++  K  +SW+++I
Sbjct: 288 AVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMI 336



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C     L  GM +H+++  +GF     +   ++ +Y  C  +  +R VFDEM  K+ 
Sbjct: 371 LGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSL 430

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCG----VVQANEVANR 565
             ++ ++ GY  +    E++ +   M    V PD   FT     C     VV+  E+  +
Sbjct: 431 VSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYK 490

Query: 566 IYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMS-WSAII 721
           + ++++     S  +SC  ++ +LG+   L  A  +   M  K     W+A++
Sbjct: 491 MEKEYNVKPALSH-YSC--MVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALL 540


>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  115 bits (289), Expect = 1e-23
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 7/206 (3%)
 Frame = +2

Query: 125 KPLWRKNHQSMSAFTT-----LDNNQRVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRG 289
           KP ++   Q++ A  T     +DN   +  E     L+ C   + +  G+++H  I    
Sbjct: 25  KPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNL 84

Query: 290 FTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKN--TFVYNTLIKGYAENNLPEESLRL 463
                 + +K+L +Y +   M DA  VFDEM  +N   F +N+LI GYAE  L E++L L
Sbjct: 85  LRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALAL 144

Query: 464 YTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGK 643
           Y  M ++GV PD FTF    K CG + + ++   +++   +S F  D+    +++ M  K
Sbjct: 145 YFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSK 204

Query: 644 CRRLQNARQVFDQMPEKSMMSWSAII 721
           C  +  AR+VFDQ+  K ++SW++++
Sbjct: 205 CGCIVRARKVFDQIEYKDIVSWNSML 230



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 45/156 (28%), Positives = 83/156 (53%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  VH H+   GF G   ++N ++ +Y  C  +V AR VFD++++K+   +N+++ GY  
Sbjct: 176 GEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTR 235

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           + L  E+L ++  M  +G  PD       + +   + + +    I+    +     ++  
Sbjct: 236 HGLHFEALDIFDQMIQEGYEPDSVAL---STLLSNISSMKFKLHIHGWVIRHGVEWNLSI 292

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             S+I M  KC +L  A+ +F QMP+K M+SW++II
Sbjct: 293 ANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSII 328


>ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  115 bits (289), Expect = 1e-23
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 7/206 (3%)
 Frame = +2

Query: 125 KPLWRKNHQSMSAFTT-----LDNNQRVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRG 289
           KP ++   Q++ A  T     +DN   +  E     L+ C   + +  G+++H  I    
Sbjct: 25  KPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNL 84

Query: 290 FTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKN--TFVYNTLIKGYAENNLPEESLRL 463
                 + +K+L +Y +   M DA  VFDEM  +N   F +N+LI GYAE  L E++L L
Sbjct: 85  LRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALAL 144

Query: 464 YTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGK 643
           Y  M ++GV PD FTF    K CG + + ++   +++   +S F  D+    +++ M  K
Sbjct: 145 YFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSK 204

Query: 644 CRRLQNARQVFDQMPEKSMMSWSAII 721
           C  +  AR+VFDQ+  K ++SW++++
Sbjct: 205 CGCIVRARKVFDQIEYKDIVSWNSML 230



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 45/156 (28%), Positives = 83/156 (53%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  VH H+   GF G   ++N ++ +Y  C  +V AR VFD++++K+   +N+++ GY  
Sbjct: 176 GEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTR 235

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           + L  E+L ++  M  +G  PD       + +   + + +    I+    +     ++  
Sbjct: 236 HGLHFEALDIFDQMIQEGYEPDSVAL---STLLSNISSMKFKLHIHGWVIRHGVEWNLSI 292

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             S+I M  KC +L  A+ +F QMP+K M+SW++II
Sbjct: 293 ANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSII 328


>ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545148|gb|EEF46658.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 462

 Score =  114 bits (286), Expect = 2e-23
 Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
 Frame = +2

Query: 251 EGMKVHAHITV-RGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGY 427
           +G ++H ++   R       LIN ++ +Y  CN MVDAR +F+ M WK+T  +N++I GY
Sbjct: 262 QGKEIHGYVVRNRHSVFNHFLINSLIEMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGY 321

Query: 428 AENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDM 607
           A N    ESLR++  M  +G +PDK TF      C  + A E    ++    K  F++ +
Sbjct: 322 ARNRDAFESLRVFCRMVLEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSKKGFSATI 381

Query: 608 HSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
               ++I M  KC  L  A  VF++MPEK++  WSA+I
Sbjct: 382 FVATALIDMYAKCGNLACAHLVFEEMPEKNLFCWSAMI 419



 Score =  105 bits (263), Expect = 1e-20
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
 Frame = +2

Query: 251 EGMKVHAHITVRG-FTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGY 427
           +G ++HA+I   G       L  K+ A Y +C  M  A+ +FD +  KN+F++N +I+GY
Sbjct: 59  KGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLKNSFLWNFMIRGY 118

Query: 428 AENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDM 607
           A N  P ++L LY DM+  G + DKFT+ F  K CG ++  E   R++ +   + F  D+
Sbjct: 119 ACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITGFNLDI 178

Query: 608 HSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           +   S++ M  K   ++ AR VFD+MP + + SW+ +I
Sbjct: 179 YVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMI 216



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
 Frame = +2

Query: 146 HQSMSAFTTLDNNQRVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVL 325
           +Q MS+F      Q+         +  C + R +  G +VH  + + GF     + N +L
Sbjct: 131 YQDMSSF-----GQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITGFNLDIYVGNSLL 185

Query: 326 AVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKF 505
           A+Y     M  AR VFD M  ++   +NT+I GY +N  P E L ++  M   G+  D  
Sbjct: 186 AMYSKFGNMKMARMVFDRMPVRDLTSWNTMISGYLKNGKPREVLAIFNLMKQIGLSVDDM 245

Query: 506 TFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCC-SIITMLGKCRRLQNARQVFDQ 682
           T       C  + A +    I+    ++  +   H    S+I M  KC  + +AR++F+ 
Sbjct: 246 TLIGLLCTCAELFAEKQGKEIHGYVVRNRHSVFNHFLINSLIEMYCKCNSMVDARKLFEH 305

Query: 683 MPEKSMMSWSAII 721
           M  K  +SW+++I
Sbjct: 306 MAWKDTVSWNSMI 318


>ref|XP_006297215.1| hypothetical protein CARUB_v10013224mg [Capsella rubella]
           gi|482565924|gb|EOA30113.1| hypothetical protein
           CARUB_v10013224mg [Capsella rubella]
          Length = 623

 Score =  114 bits (285), Expect = 3e-23
 Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
 Frame = +2

Query: 308 LINKVLAVYVNCNRMVDARHVFDEMQWKNT--FVYNTLIKGYAENNLPEESLRLYTDMAD 481
           L+  +  +YV+CN++  ARHVFDE+    T    ++ +I+ YA N   EE+L LY  M +
Sbjct: 6   LLVNLTRLYVSCNKVEFARHVFDEIPHPRTNPIAWDVMIRAYASNGFSEEALDLYYKMLN 65

Query: 482 QGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQN 661
            GVRP K+T+ F  K C  ++A E    I+     SNF +DM+ C +++    KC  L  
Sbjct: 66  SGVRPTKYTYPFVLKACAGLRAMEDGKLIHSHVTCSNFATDMYVCTALVDFYAKCGELDM 125

Query: 662 ARQVFDQMPEKSMMSWSAII 721
           A QVFDQMP++ +++W+A+I
Sbjct: 126 ALQVFDQMPKRDIVAWNAMI 145



 Score = 76.6 bits (187), Expect = 7e-12
 Identities = 44/156 (28%), Positives = 75/156 (48%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  VH +    GF     + N +++ Y     + DA   F E+  K+   YN+LI G  E
Sbjct: 296 GQCVHCYAVKAGFILDLTVGNTIISFYAKYGSLSDAFKQFGEIGLKDVVSYNSLISGCVE 355

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           N   EESL L+ DM   G++PD  T       C  + A   A+  +       + ++   
Sbjct: 356 NCRSEESLCLFHDMKSSGMKPDITTLLGVLTACSHLAALGHASSCHGYCVVHGYAANTRI 415

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           C +++ +  KC +L  A++VFD M  + ++SW+ ++
Sbjct: 416 CNALMDVYTKCGKLDLAKRVFDTMQNRDIVSWNTVL 451



 Score = 70.5 bits (171), Expect = 5e-10
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 5/188 (2%)
 Frame = +2

Query: 140 KNHQSMSAFTTLDNN-QRVSIENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLIN 316
           ++ +S+  F  + ++  +  I  L+  L  C +   L      H +  V G+     + N
Sbjct: 358 RSEESLCLFHDMKSSGMKPDITTLLGVLTACSHLAALGHASSCHGYCVVHGYAANTRICN 417

Query: 317 KVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRP 496
            ++ VY  C ++  A+ VFD MQ ++   +NT++ G+  + L +E+L L+  M D GV P
Sbjct: 418 ALMDVYTKCGKLDLAKRVFDTMQNRDIVSWNTVLFGFGIHGLGKEALSLFNSMHDTGVYP 477

Query: 497 DKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFT----SDMHSCCSIITMLGKCRRLQNA 664
           D+ TF      CG     +   +++      ++      D + C  +  +L +   L  A
Sbjct: 478 DEVTFLAILSACGHSGLVDEGKQLFNSMSSGDYNVIPRIDHYIC--MTDLLTRAGYLDEA 535

Query: 665 RQVFDQMP 688
               ++MP
Sbjct: 536 YDFVNKMP 543



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C   R + +G  +H+H+T   F     +   ++  Y  C  +  A  VFD+M  ++ 
Sbjct: 79  LKACAGLRAMEDGKLIHSHVTCSNFATDMYVCTALVDFYAKCGELDMALQVFDQMPKRDI 138

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMAD-QGVRPDKFTFTFAAKVCGVVQANEVANRIYQ 574
             +N +I G++ +    + + L+ +M    G+RP+  T        G   A      ++ 
Sbjct: 139 VAWNAMISGFSLHCCLTDVIGLFLNMRRIDGLRPNLSTIVGMFPALGRAGALREGKAVHG 198

Query: 575 DFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              +  F++D+     I+ +  K + L  AR+VFD +  K+ ++WSA+I
Sbjct: 199 YCTRIGFSNDLVFETGILDVYAKSKCLIYARRVFDSVSLKNEVTWSAMI 247


>ref|XP_006426947.1| hypothetical protein CICLE_v10027522mg, partial [Citrus clementina]
           gi|557528937|gb|ESR40187.1| hypothetical protein
           CICLE_v10027522mg, partial [Citrus clementina]
          Length = 488

 Score =  113 bits (283), Expect = 5e-23
 Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 7/175 (4%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C+ ++ +  G ++HA I+  GF     L  K++ +Y  C+ + +A  +FD +  +N 
Sbjct: 16  LQSCIAQKAVSPGKQIHALISQMGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNL 75

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
           F++N LI+GYA N   E ++ LY  + + G+ PD FTF FA K C  + A E   RI++D
Sbjct: 76  FLWNVLIRGYAWNGPYEVAIELYYRLLEFGLVPDNFTFPFALKACSALSAIEEGRRIHED 135

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQ-------MPEKSMMSWSAII 721
             ++ + +D+    ++I M  KC  + NARQVFD+       + EK ++SW+A+I
Sbjct: 136 VIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDVVLREKRVVSWNAMI 190


>ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
           lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein
           ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata]
          Length = 758

 Score =  113 bits (283), Expect = 5e-23
 Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 2/170 (1%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L+ C N R +  G++VH  I          + +K++ +Y +C     A  VFD M  + +
Sbjct: 330 LETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLYASCGYAEVAHEVFDRMSKRES 389

Query: 398 --FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIY 571
             F +N+LI GYAE    E+++ LY  MA+ GV+PD+FTF    K CG + + ++   I+
Sbjct: 390 SPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIH 449

Query: 572 QDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           +D  K+ F  D+H   +++ M  KC  +  AR VFD +P K  +SW++++
Sbjct: 450 RDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKDYVSWNSML 499



 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 41/156 (26%), Positives = 78/156 (50%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  +H  +   GF     ++N ++ +Y  C  +V AR+VFD +  K+   +N+++ GY  
Sbjct: 445 GEAIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKDYVSWNSMLTGYLH 504

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           + L  E+L ++  M   G+ PDK      + V   V + +   +++    +     ++  
Sbjct: 505 HGLLHEALDIFRLMVQNGIDPDKVAI---SSVLARVLSFKHGRQLHGWVIRRGMEWELSV 561

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++I +  K  +L  A  +FDQM E+  +SW+AII
Sbjct: 562 ANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAII 597


>ref|XP_006465624.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Citrus sinensis]
          Length = 644

 Score =  113 bits (282), Expect = 7e-23
 Identities = 56/168 (33%), Positives = 99/168 (58%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C+ ++ +  G ++HA I+  GF     L  K++ +Y  C+ + +A  +FD +  +N 
Sbjct: 78  LQSCIAQKAVSPGKQIHALISQMGFGFHPVLATKLVHLYSACDCLHNAHQLFDRIPQRNL 137

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
           F++N LI+ YA N   E ++ LY  + + G+ PD FTF FA K C  + A E   RI++D
Sbjct: 138 FLWNVLIRAYAWNGPYEVAIELYYRLLEIGLVPDNFTFPFALKACSALSAIEEGRRIHED 197

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++ + +D+    ++I M  KC  + NARQVFD++ E+ ++ W+++I
Sbjct: 198 VIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDVVVWNSMI 245



 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 40/168 (23%), Positives = 84/168 (50%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C     + EG ++H  +    +     +   ++ +Y  C+ +V+AR VFD++  ++ 
Sbjct: 179 LKACSALSAIEEGRRIHEDVIRNKWETDVFVGAALIDMYAKCSCVVNARQVFDKILERDV 238

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
            V+N++I  Y +N   +ES+ L  +M   G++P + T          + A      ++  
Sbjct: 239 VVWNSMIAAYGQNGQADESIELCREMILTGLKPSEATLVTVISASTDIAALPQGRELHGF 298

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             +  F  ++    +++ M  KC  ++ AR +F+Q+ EK ++SW+A+I
Sbjct: 299 SWRHRFELNVKVKTALVDMYAKCGLVKVARNLFEQLGEKRVVSWNAMI 346


>gb|EXB74521.1| hypothetical protein L484_026217 [Morus notabilis]
          Length = 651

 Score =  112 bits (279), Expect = 2e-22
 Identities = 53/168 (31%), Positives = 97/168 (57%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           +  C+ R+ +  G ++H+H+   G      L  K++ +Y  C  + +A H+FD +  +N 
Sbjct: 84  IQSCITRKAIKPGKQLHSHLCQMGLGFNTFLATKLVNMYCVCGSLWNAHHLFDRIPKRNL 143

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
           F++N LI+GYA N   E ++ LY  M D G+ PD++TF F  K C  + A EV  +I++ 
Sbjct: 144 FLWNVLIRGYAWNGPYEVAIALYNQMFDCGLVPDRYTFPFVLKACSALSAIEVGRKIHER 203

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              +   +D++   ++I M  KC   Q+AR+VFD++ E+  + W++++
Sbjct: 204 VVYTMCETDVYVGAALIDMYAKCCCPQSARRVFDKIEERDAVLWNSML 251



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 39/168 (23%), Positives = 81/168 (48%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C     +  G K+H  +          +   ++ +Y  C     AR VFD+++ ++ 
Sbjct: 185 LKACSALSAIEVGRKIHERVVYTMCETDVYVGAALIDMYAKCCCPQSARRVFDKIEERDA 244

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
            ++N+++  Y +N  P+ESL L ++M   G+RP + T          + A      ++  
Sbjct: 245 VLWNSMLAAYTQNGHPDESLALCSEMVLAGLRPTEATLVTVISASADIVALPAGKELHGF 304

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++ F S+     +++ M  K   ++ AR +F+++ EK ++SW+A+I
Sbjct: 305 SLRNGFESNDKVKTALVDMYAKSGSVKVARTLFERLGEKRVVSWNAMI 352


>ref|XP_006413323.1| hypothetical protein EUTSA_v10024921mg [Eutrema salsugineum]
           gi|557114493|gb|ESQ54776.1| hypothetical protein
           EUTSA_v10024921mg [Eutrema salsugineum]
          Length = 523

 Score =  111 bits (278), Expect = 2e-22
 Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 7/195 (3%)
 Frame = +2

Query: 158 SAFTTLDNNQRVSI-----ENLMHHLDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKV 322
           S  T L+ + R  I     E     L+ C + R +  G++VH  I V        + +K+
Sbjct: 70  SVITDLETSARKGITISEPEIFASLLETCYSLRAIDLGVRVHRLIPVHLLRNNLGISSKL 129

Query: 323 LAVYVNCNRMVDARHVFDEMQWKNT--FVYNTLIKGYAENNLPEESLRLYTDMADQGVRP 496
           + +Y +C     A  VFD M  + +  F +N+LI GYAE+   E+++ LY  MA++GV+P
Sbjct: 130 VRLYASCGYAEVAHEVFDRMSKRKSSAFAWNSLISGYAESGQYEDAMALYFQMAEEGVKP 189

Query: 497 DKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVF 676
           D+FTF    K CG + + ++   I++D  K  +  D++   +++ M  KC  +   R VF
Sbjct: 190 DRFTFPRVLKACGGIGSIQIGEAIHRDLVKQGYGYDVYVLNALVDMYAKCGDIVKGRNVF 249

Query: 677 DQMPEKSMMSWSAII 721
           D +P K  +SW++++
Sbjct: 250 DMIPNKDYVSWNSML 264



 Score = 66.6 bits (161), Expect = 8e-09
 Identities = 37/156 (23%), Positives = 79/156 (50%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G  +H  +  +G+     ++N ++ +Y  C  +V  R+VFD +  K+   +N+++  Y  
Sbjct: 210 GEAIHRDLVKQGYGYDVYVLNALVDMYAKCGDIVKGRNVFDMIPNKDYVSWNSMLTSYLH 269

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           + L +E++ ++  M   G+ PDK   +    V   V + +   +++    +     ++  
Sbjct: 270 HGLLQEAMHIFRLMVQDGIEPDKVAIS---SVLARVLSFKHGRQLHGWAIRRGMECELSV 326

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++I +  K  +L  A  +FDQM E+ ++SW+AII
Sbjct: 327 VNALIVLYSKRGQLSQACFIFDQMLERDIVSWNAII 362


>ref|XP_006361605.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Solanum tuberosum]
          Length = 602

 Score =  110 bits (276), Expect = 4e-22
 Identities = 53/168 (31%), Positives = 95/168 (56%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C+ R+ +  G ++HAH+ + G      L  K++ +Y  C+++ +A H+FD +   N 
Sbjct: 36  LQSCIGRKAVEPGKQLHAHLCLTGLGYNINLATKLVNLYSVCDKLPNAHHLFDRIPKGNI 95

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
           F++N LI+GYA N   E ++ LY  M D G  PD FTF F  K C  + A EV   I++ 
Sbjct: 96  FLWNVLIRGYAWNGPYEAAISLYYQMIDYGHVPDNFTFPFVLKACSALSAIEVGKDIHEY 155

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++ +  D+    ++I M  KC  +  +R+VF+ + E+ ++ W++++
Sbjct: 156 AKRTKWDKDVFVGAALIDMYAKCGCVGRSREVFEDVVERDVVVWNSML 203



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 36/134 (26%), Positives = 70/134 (52%)
 Frame = +2

Query: 320 VLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPD 499
           ++ +Y  C  +  +R VF+++  ++  V+N+++  Y++N  PE+ L L  +MA  GVRP 
Sbjct: 171 LIDMYAKCGCVGRSREVFEDVVERDVVVWNSMLAAYSQNGHPEDCLDLCGEMACGGVRPT 230

Query: 500 KFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFD 679
           + T   A      V A      ++    +  F S      +++ M  K   ++ AR +F+
Sbjct: 231 EATLVTAISASADVAALRQGMELHGYSWRQGFDSLDKVKTALVDMYAKSGSVKVARILFE 290

Query: 680 QMPEKSMMSWSAII 721
            + EK ++SW+A+I
Sbjct: 291 GLQEKRVVSWNAMI 304


>ref|XP_001785140.1| predicted protein [Physcomitrella patens]
           gi|162663262|gb|EDQ50036.1| predicted protein
           [Physcomitrella patens]
          Length = 922

 Score =  110 bits (276), Expect = 4e-22
 Identities = 55/168 (32%), Positives = 95/168 (56%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C N   L +G+K+HA+I   G   +  + N ++++Y  C  + +AR VFD ++  N 
Sbjct: 260 LGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNR 319

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +N +I GY E  + EE+ RL+ DM  +G +PD+FT+     +C           ++  
Sbjct: 320 VSWNAMIAGYGEGFM-EEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQ 378

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++ + +D+    ++I+M  KC  L+ AR+VF+QMPEK+ +SW+A I
Sbjct: 379 IVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFI 426



 Score =  103 bits (257), Expect = 6e-20
 Identities = 52/168 (30%), Positives = 95/168 (56%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L +C+  + L EG KVH H+    F     L N ++++Y  C  + DA +VF  M+ K+ 
Sbjct: 58  LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +N +I GYA +   +E++ L+  M  +G++P++ +F      C      E   +I+  
Sbjct: 118 VSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSH 177

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             K+ + SD++   ++I M  KC  L+ AR+VF++M E++++SW+A+I
Sbjct: 178 ITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMI 225



 Score = 83.2 bits (204), Expect = 8e-14
 Identities = 44/168 (26%), Positives = 84/168 (50%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C    +L  G ++H+HIT  G+     +   ++ +Y  C  +  AR VF+EM+ +N 
Sbjct: 159 LSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNV 218

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +  +I GY ++   +E+  L+  +   G +P+K +F      C      E   +++  
Sbjct: 219 VSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAY 278

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             ++    ++    ++I+M  +C  L NARQVFD +   + +SW+A+I
Sbjct: 279 IKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMI 326



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 38/168 (22%), Positives = 80/168 (47%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L+ C +      G  +H  I   G      + N ++++Y  C ++ DAR VF  ++ ++ 
Sbjct: 461 LNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDL 520

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             +N +I  Y ++     +  L+     +G + DK+TF    +    ++  +   +I+  
Sbjct: 521 GSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGL 580

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
            +K+    D+    ++I M  KC  L++A  VF  + EK ++ W+A++
Sbjct: 581 VEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAML 628



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 42/165 (25%), Positives = 80/165 (48%)
 Frame = +2

Query: 227 CMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVY 406
           C +R  L  G ++H+ I    +     +   ++++Y  C  + +AR VF++M  KN   +
Sbjct: 363 CADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSW 422

Query: 407 NTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDK 586
           N  I     +   +E+ +++  M    V PD  TF      C   +  E    I+   D+
Sbjct: 423 NAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQ 482

Query: 587 SNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
               S+     ++I+M G+C +L +AR+VF ++  + + SW+A+I
Sbjct: 483 WGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMI 527



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
 Frame = +2

Query: 254  GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
            G K+H  +   G      ++  ++ +Y  C  + DA  VF  +Q K+   +N ++  Y  
Sbjct: 574  GRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNH 633

Query: 434  NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
            ++  +++L+L+  M  +GV PD  T+T     C  + A E   + +    ++   +D   
Sbjct: 634  SDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEAAMETDTRH 693

Query: 614  CCSIITMLGKCRRLQNARQVFDQM-PEKSMMSWSAII 721
               ++  LG+   L+ A +  +++  E   + W +++
Sbjct: 694  YACMVAALGRASLLKEAEEFIEEISSESDALMWESLL 730


>ref|XP_006494746.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Citrus sinensis]
          Length = 850

 Score =  110 bits (275), Expect = 5e-22
 Identities = 57/168 (33%), Positives = 95/168 (56%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C   + +  G ++HAH+  RG      +IN ++  Y  C R+  AR +FDE++ KN 
Sbjct: 266 LSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNI 325

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             + TLI GY +N+   E+++L+T+M   G +PD F  +     CG V+A E   +++  
Sbjct: 326 ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAY 385

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             K+N  SD     S++ M  KC  L  AR+VFD M +++++S++A+I
Sbjct: 386 SFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 433



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 46/168 (27%), Positives = 84/168 (50%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C +   L +G +VHA+           + N ++ +Y  C+ + +AR VFD M  +N 
Sbjct: 367 LTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNV 426

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             YN +I+GY++     E+L L+ +M    V P   TF     +   V + E + +I+  
Sbjct: 427 VSYNAMIEGYSKQEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGL 486

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             K     D+ +  ++I    KC   ++AR VFD+M ++ ++ W+A++
Sbjct: 487 IIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAML 534



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 37/156 (23%), Positives = 76/156 (48%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G ++H+ +   GF     +   ++ +Y     + DA+ VFD +  K    + T+I GY +
Sbjct: 177 GEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVK 236

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           +   + SL L+  M +  V  DK+  +     C ++Q      +I+    +     D+  
Sbjct: 237 SGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSV 296

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              ++    KC R++ AR++FD++  K+++SW+ +I
Sbjct: 297 INVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLI 332



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 35/134 (26%), Positives = 64/134 (47%)
 Frame = +2

Query: 320 VLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPD 499
           ++  Y  C    DAR VFDEM  ++  V+N ++ GY +    EE+++LY ++     RP+
Sbjct: 502 LIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN 561

Query: 500 KFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFD 679
           +FTF         + + +   + +    K     D     ++I M  KC  L++A + F 
Sbjct: 562 EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDPFITSALIDMYAKCGSLEDAYETFG 621

Query: 680 QMPEKSMMSWSAII 721
               K +  W+++I
Sbjct: 622 STTWKDVACWNSMI 635



 Score = 63.2 bits (152), Expect = 8e-08
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
 Frame = +2

Query: 260 KVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENN 439
           +VHA I + G      L N +L  Y   N +  AR +FD M  +N   +++L+  Y +  
Sbjct: 73  QVHAQIVISGLQCDTFLANMLLRNYSKANDLDGARKLFDTMSERNLVSWSSLVSMYTKKG 132

Query: 440 LPEESLRLYTDMADQG-VRPDKFTFTFAAKVC----GVVQANEVANRIYQDFDKSNFTSD 604
             EE+L ++      G  RPD +  +     C    G         +++    KS F  D
Sbjct: 133 YGEEALMVFIGFLKVGNGRPDDYILSSVICACTQLGGGGDGGNAGEQMHSFVIKSGFDRD 192

Query: 605 MHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
           ++   S++ +  K   + +A+ VFD +  K+ +SW+ II
Sbjct: 193 VYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTII 231



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
 Frame = +2

Query: 245  LLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKG 424
            L  G + H H+   G      + + ++ +Y  C  + DA   F    WK+   +N++I  
Sbjct: 578  LKHGQQFHNHLIKLGLDFDPFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICT 637

Query: 425  YAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSD 604
             A +  P ++L L+ +M  +G+ P+  TF      C      E     +Q          
Sbjct: 638  NAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 697

Query: 605  MHSCCSIITMLGKCRRLQNARQVFDQMPEK-SMMSWSAII 721
            M    S+ ++LG+  +L  A+   ++MP K + + W +++
Sbjct: 698  MEHYASVASLLGRAGKLYEAKDFIEKMPIKPAAVVWRSLL 737


>ref|XP_006428022.1| hypothetical protein CICLE_v10024954mg [Citrus clementina]
           gi|557530012|gb|ESR41262.1| hypothetical protein
           CICLE_v10024954mg [Citrus clementina]
          Length = 759

 Score =  110 bits (275), Expect = 5e-22
 Identities = 57/168 (33%), Positives = 95/168 (56%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C   + +  G ++HAH+  RG      +IN ++  Y  C R+  AR +FDE++ KN 
Sbjct: 175 LSACSMLQFVGGGKQIHAHVLRRGMGMDVSVINVLMDFYSKCGRVKMARRLFDEIEVKNI 234

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             + TLI GY +N+   E+++L+T+M   G +PD F  +     CG V+A E   +++  
Sbjct: 235 ISWTTLIGGYMQNSFDREAMKLFTEMTRSGWKPDDFACSSVLTSCGSVEALEQGRQVHAY 294

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             K+N  SD     S++ M  KC  L  AR+VFD M +++++S++A+I
Sbjct: 295 SFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNVVSYNAMI 342



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 46/168 (27%), Positives = 84/168 (50%)
 Frame = +2

Query: 218 LDQCMNRRLLLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNT 397
           L  C +   L +G +VHA+           + N ++ +Y  C+ + +AR VFD M  +N 
Sbjct: 276 LTSCGSVEALEQGRQVHAYSFKANIESDNFVKNSLVDMYAKCDSLTEARKVFDVMADRNV 335

Query: 398 FVYNTLIKGYAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQD 577
             YN +I+GY++     E+L L+ +M    V P   TF     +   V + E + +I+  
Sbjct: 336 VSYNAMIEGYSKQEKLSEALDLFHEMRVGFVPPGLLTFVSLLGLSSSVFSLESSKQIHGL 395

Query: 578 FDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
             K     D+ +  ++I    KC   ++AR VFD+M ++ ++ W+A++
Sbjct: 396 IIKYGVFLDVFAGSALIDAYSKCFSNKDARLVFDEMNQRDIVVWNAML 443



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 37/156 (23%), Positives = 76/156 (48%)
 Frame = +2

Query: 254 GMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAE 433
           G ++H+ +   GF     +   ++ +Y     + DA+ VFD +  K    + T+I GY +
Sbjct: 86  GEQMHSFVIKSGFDRDVYVGTSLMNLYAKNGSVDDAKFVFDGLMVKTAVSWTTIITGYVK 145

Query: 434 NNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHS 613
           +   + SL L+  M +  V  DK+  +     C ++Q      +I+    +     D+  
Sbjct: 146 SGRSDLSLNLFNQMRETDVVHDKYLLSSVLSACSMLQFVGGGKQIHAHVLRRGMGMDVSV 205

Query: 614 CCSIITMLGKCRRLQNARQVFDQMPEKSMMSWSAII 721
              ++    KC R++ AR++FD++  K+++SW+ +I
Sbjct: 206 INVLMDFYSKCGRVKMARRLFDEIEVKNIISWTTLI 241



 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 35/134 (26%), Positives = 64/134 (47%)
 Frame = +2

Query: 320 VLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKGYAENNLPEESLRLYTDMADQGVRPD 499
           ++  Y  C    DAR VFDEM  ++  V+N ++ GY +    EE+++LY ++     RP+
Sbjct: 411 LIDAYSKCFSNKDARLVFDEMNQRDIVVWNAMLLGYTQQLENEEAIKLYLELLLSQQRPN 470

Query: 500 KFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSDMHSCCSIITMLGKCRRLQNARQVFD 679
           +FTF         + + +   + +    K     D     ++I M  KC  L++A + F 
Sbjct: 471 EFTFAALITAASNLGSLKHGQQFHNHLIKLGLDFDPFITSALIDMYAKCGSLEDAYETFG 530

Query: 680 QMPEKSMMSWSAII 721
               K +  W+++I
Sbjct: 531 STTWKDVACWNSMI 544



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
 Frame = +2

Query: 245 LLEGMKVHAHITVRGFTGKKPLINKVLAVYVNCNRMVDARHVFDEMQWKNTFVYNTLIKG 424
           L  G + H H+   G      + + ++ +Y  C  + DA   F    WK+   +N++I  
Sbjct: 487 LKHGQQFHNHLIKLGLDFDPFITSALIDMYAKCGSLEDAYETFGSTTWKDVACWNSMICT 546

Query: 425 YAENNLPEESLRLYTDMADQGVRPDKFTFTFAAKVCGVVQANEVANRIYQDFDKSNFTSD 604
            A +  P ++L L+ +M  +G+ P+  TF      C      E     +Q          
Sbjct: 547 NAHHGEPMKALLLFREMIIEGLEPNYITFVGVLSACSHAGLIEDGLDHFQSMAGFGIEPG 606

Query: 605 MHSCCSIITMLGKCRRLQNARQVFDQMPEK-SMMSWSAII 721
           M    S+ ++LG+  +L  A+   ++MP K + + W +++
Sbjct: 607 MEHYASVASLLGRAGKLYEAKDFIEKMPIKPAAVVWRSLL 646