BLASTX nr result
ID: Ephedra25_contig00024991
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00024991
(1342 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 257 7e-66
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 240 9e-61
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 239 2e-60
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 239 3e-60
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 236 2e-59
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 233 1e-58
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 224 5e-56
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 224 5e-56
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 223 2e-55
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 221 5e-55
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 221 7e-55
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 221 7e-55
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 218 4e-54
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 218 4e-54
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 218 4e-54
gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops... 218 5e-54
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 218 5e-54
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme... 218 6e-54
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare] 218 6e-54
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus... 217 8e-54
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 257 bits (657), Expect = 7e-66
Identities = 160/430 (37%), Positives = 244/430 (56%), Gaps = 6/430 (1%)
Frame = -2
Query: 1299 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 1120
STV + +P + +A EL++FL+S +G S+F+C I TER NWKS G VQF+ A K
Sbjct: 4 STVKVSTIPLSALAEELLQFLESHIGPRSIFACTIVTERRNWKSKGFGRVQFETCNDAKK 63
Query: 1119 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCY---SVSGGVLSVGNMVSESALSVLWSAK 949
+ S +G L+ +G HL + L +D + RPC V+GG L VG +V E ++SV+ S
Sbjct: 64 ANDLSLEGKLVFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSWN 123
Query: 948 DCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 769
AE + +++ FYV E +K+E R +DI T T+ ILL+++ RI+
Sbjct: 124 LVKAELMPERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRIY 183
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
K+ S S ++ + CKE+ + W+RTTDFS + +GQ++ FC
Sbjct: 184 CKVP---SSSKCGRDRYHICKEEYEFDWVRTTDFSASRTIGQSTYFCWMLHESTDIAIIK 240
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
++ P + +Q L ++ V LVP + L Y+I F+LN+LVH G +S PT
Sbjct: 241 KSFPHHKEIQT-LYLDKGVSFCSSSDLVPIINTLPDCKLAYEILFQLNALVHAGKISGPT 299
Query: 408 LTCEFFNVLT-NPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLI 232
+ + ++L N N + L AL++L KS TC P + +Q + ++ N K+L S
Sbjct: 300 IGQDLLDILAGNENVAKL----ALAKLHKSEATCYDPLQIIQRHINDITR-NKKKLQSPS 354
Query: 231 VSPSKD--LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLH 58
S +D LM +R LVTPSKVYF+GPEL SN + +HF+ +A DF+RVSFVDED +L
Sbjct: 355 SSKLEDHNLMNCHRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDWSKLP 414
Query: 57 ANALTVKLKT 28
++AL+ KL++
Sbjct: 415 SDALSPKLES 424
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 240 bits (613), Expect = 9e-61
Identities = 145/444 (32%), Positives = 243/444 (54%), Gaps = 7/444 (1%)
Frame = -2
Query: 1311 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 1132
+R ++TV + N+P++ +A +L +F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQ 64
Query: 1131 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVL 961
+ S +G L+ +G+ L + D I RP G+L G +V + VL
Sbjct: 65 DKLHCLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVL 124
Query: 960 WSAKDCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTG 781
+ +D + + + F+V H E Y++E++ D+ + E+ + +LLKL+
Sbjct: 125 ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQKS-ALLLKLKHA 183
Query: 780 ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKH 601
+++Q++S S + + + CKED + W+RTTDFS ++G +S C + +G
Sbjct: 184 PKLYQRVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLS 243
Query: 600 PAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 421
+ +LP +L ++ + VP VR+P + LPY+I F+LNSLV +
Sbjct: 244 SDLLSSLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKI 303
Query: 420 SAPTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYELKNTNPK 250
S + + VL S L ++ A L ++ K +TC +P ++++RL+ L N
Sbjct: 304 SLGAVNPDLIEVL-----SKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKN 358
Query: 249 QLNSLIVS-PSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDED 73
QL+S + +M +RVLVTPSK+Y +GPEL SN + ++F++HASDF+RV+FV+ED
Sbjct: 359 QLSSSYSRLVNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEED 418
Query: 72 LGRLHANALTVKLKTEQDILERPW 1
G+L NA V + EQ I +P+
Sbjct: 419 WGKLFPNA--VSMSVEQGIFAKPY 440
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 239 bits (610), Expect = 2e-60
Identities = 146/425 (34%), Positives = 231/425 (54%), Gaps = 4/425 (0%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 1117
TV + P+ A + +FL+SI G G+V+ +I+ ++ S IVQF A I
Sbjct: 77 TVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAEVI 136
Query: 1116 CNRSTKG-GLIIEGYHLDVKLRDKDHIHRP--CYSVSGGV-LSVGNMVSESALSVLWSAK 949
+ + + L ++ V+ + D + P Y V + L GN +SE + ++LWS
Sbjct: 137 YSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNT 196
Query: 948 DCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 769
+ EF F +KI FY+ H DYK++L ++I T ++L++Q RIF
Sbjct: 197 NVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIF 256
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
QK L S Y F + K+ D QW+R+ DF+ +C++GQ+S CL NG + P
Sbjct: 257 QK-PLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIR 315
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
EN +++ + ++ S HLVP V PD + LPY I F++NSLV +G L PT
Sbjct: 316 ENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPT 375
Query: 408 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 229
L EF+N+L N SP + +L ++ + CL+P +WLQ + + +N P++ + +
Sbjct: 376 LDTEFYNLL-NGLPSPF-VERSLEDISRLTNCCLEPAKWLQEQYKKYRNL-PRRPSPAAI 432
Query: 228 SPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANA 49
S L+ +RV VTPSKVYF GPE+N SNRV R FS++ +F+R+SF+DED G + +
Sbjct: 433 SLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTD 492
Query: 48 LTVKL 34
L+ ++
Sbjct: 493 LSKRM 497
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 239 bits (609), Expect = 3e-60
Identities = 145/445 (32%), Positives = 248/445 (55%), Gaps = 8/445 (1%)
Frame = -2
Query: 1311 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 1132
+R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRVTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQ 64
Query: 1131 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVL 961
+ + S +G L+ +G+ L + D I RP Y G+L G ++ + VL
Sbjct: 65 SKLQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVL 124
Query: 960 WSAKDCNAEFSFQGQKISFYVVHGR-EDYKIELRLDDISATSAYINEDTDTPCILLKLQT 784
+ ++ + + + F+V H + E Y++E++ DI T ED T +LLKL+
Sbjct: 125 ETWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKT-ALLLKLKH 183
Query: 783 GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRK 604
+++Q++S S + + + C+ED + W+RTTDFS ++G +S C + +G
Sbjct: 184 APKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLL 243
Query: 603 HPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 424
+ LP+ +L+++ + LVP P + LPY+I F+LNSL+H
Sbjct: 244 SSDLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHK 303
Query: 423 LSAPTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYEL-KNTN 256
+S + + VL S L ++ A L ++ K +TC +P ++++RL+ L KN+
Sbjct: 304 ISLGAVKTDLIEVL-----SKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSK 358
Query: 255 PKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDE 76
+ +S ++++M +RVLVTPSKVY +GPEL SN + ++F+ HASDF+RV+FV+E
Sbjct: 359 NQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEE 418
Query: 75 DLGRLHANALTVKLKTEQDILERPW 1
D G+L NA + + EQ I +P+
Sbjct: 419 DWGKLSPNA--ISMSVEQGIFAKPY 441
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 236 bits (602), Expect = 2e-59
Identities = 143/436 (32%), Positives = 237/436 (54%), Gaps = 3/436 (0%)
Frame = -2
Query: 1299 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 1120
ST+ + N+P + +A +L+ FL+S LG SVF+ +I TER NWKS GS VQF K
Sbjct: 7 STLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAK 66
Query: 1119 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVS---GGVLSVGNMVSESALSVLWSAK 949
+ S + L+ +L L + D + RP ++ + GVL VG M+ E +SVL S +
Sbjct: 67 AMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWE 126
Query: 948 DCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 769
A + ++I F++ H +E YK+E+ ++I T+ + + +LLKL+ RI+
Sbjct: 127 GVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIY 186
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
+K+S S + ++ C ED D W+RTT+FS +VGQ++ FC + +
Sbjct: 187 KKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIF 246
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
PF++ Q ++++E+ +VP ++ G L Y++ ++LNSLVH +S
Sbjct: 247 SCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSA 306
Query: 408 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 229
+ + L + +N+ L L + C P +L+++L+ K S
Sbjct: 307 ANQDLIDFLCTLDIDTA-LNV-LQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQK 364
Query: 228 SPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANA 49
S ++M YRVLVTPS++Y +GPEL SN V ++FS +ASDF+RV+FV+ED +L A A
Sbjct: 365 RLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGA 424
Query: 48 LTVKLKTEQDILERPW 1
+T + ++ IL +P+
Sbjct: 425 VTTSI--QRGILSKPY 438
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 233 bits (594), Expect = 1e-58
Identities = 144/446 (32%), Positives = 238/446 (53%), Gaps = 9/446 (2%)
Frame = -2
Query: 1311 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPG 1132
+R ++TV + N+P++ +A +L F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQ 64
Query: 1131 LATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVL 961
+ + +G L+ +G+ L + D I RP G+L G +V + + VL
Sbjct: 65 DKLHCLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVL 124
Query: 960 WSAKDCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTG 781
+ +D + + + F+V H E Y++E++ D++ + + +LLKL+
Sbjct: 125 ETWEDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTE-GTLCSVENQKSALLLKLKHA 183
Query: 780 ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKH 601
+++Q++S S + + + CKED + WIRTTDFS ++G +S C + +G
Sbjct: 184 PKLYQRVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLS 243
Query: 600 PAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 421
+LP +L ++ + VP VR+P + LPY+I F+LNSLV +
Sbjct: 244 SDLFSSLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKI 303
Query: 420 SAPTLTCEFFNVLTNPNYSPLHINIA---LSELFKSMTTCLQPNRWLQSRLYELKNTN-- 256
S + VL S L ++ A L ++ K + C P ++++RL+ L N
Sbjct: 304 SLGAINPNLIEVL-----SKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKN 358
Query: 255 -PKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVD 79
P S +V+ S +M +RVLVTPSK+Y +GPEL SN + ++F+ HASDF+RV+FV+
Sbjct: 359 RPSSSYSRLVNHS--MMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVE 416
Query: 78 EDLGRLHANALTVKLKTEQDILERPW 1
ED G+L NA V + EQ I +P+
Sbjct: 417 EDWGKLFPNA--VSMSVEQGIFAKPY 440
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 224 bits (572), Expect = 5e-56
Identities = 143/439 (32%), Positives = 233/439 (53%), Gaps = 9/439 (2%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGS--CIVQFDNPG 1132
M T+ + P V A + +FL+S G G+V++ +++T + K G IVQF
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK---KGVGRLYAIVQFTTKE 57
Query: 1131 LATKICNRSTKGGLIIEGY-HLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSV 964
A I + + + + G +L+ + ++D + RP +++ L G +S +V
Sbjct: 58 AADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAV 117
Query: 963 LWSAKDCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQT 784
LW + F F +KI+F + H E+Y++EL ++I + T +L++L
Sbjct: 118 LWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLG 177
Query: 783 GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRK 604
RIFQK +R Y F F KE D QW+RTTDF+ + +GQ++ C++ +
Sbjct: 178 APRIFQK-GIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 236
Query: 603 HPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 424
P F EN +++ +D ++E S LVP V PDG+ LPY+I FK+N LV +G
Sbjct: 237 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 296
Query: 423 LSAPTLTCEFFNVLTNPNYSPLHINI---ALSELFKSMTTCLQPNRWLQSRLYELKNTNP 253
++ P L F+ L +P +P+ I+ AL +L+ C +P+RWL + Y T+
Sbjct: 297 VAGPLLDSNFYR-LVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ-YRKYMTSR 354
Query: 252 KQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDED 73
+ +S +S L+ +RV VTPS+VYF GPE+N SNRV RHF +F+R+SF+DED
Sbjct: 355 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 414
Query: 72 LGRLHANALTVKLKTEQDI 16
L ++H+ L+ + + DI
Sbjct: 415 LDKIHSTDLSPRGSSATDI 433
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 224 bits (572), Expect = 5e-56
Identities = 142/439 (32%), Positives = 233/439 (53%), Gaps = 7/439 (1%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 1117
+V + N+P+T+ A E++++L + LG+ SVF+ +I T R NW S G VQF + + +
Sbjct: 9 SVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEA 68
Query: 1116 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVLWSAKD 946
+ S K L+++ +L + D I RP + GVL VG M E+ L VL +
Sbjct: 69 LSLSLKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEG 128
Query: 945 CNAEFSFQGQKISFYVVHGRE-DYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 769
F + ++I F++ G+E YK+ + +DI Y + ++LKL+ G RI+
Sbjct: 129 VRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIY 188
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
QK+S S + N + +CKED D W+RTTD S ++GQ++ FC + G +
Sbjct: 189 QKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTF 248
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
N P+++ + L +E+ VP +R L Y++ F+LNSLVH +S
Sbjct: 249 RNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAA 307
Query: 408 LTCEFFNVLTNPNYSPLHIN---IALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNS 238
+ + +L N L +N I L +L K TC P +++ L E ++ PK L
Sbjct: 308 VDSDLIKILRN-----LTVNTAIIILQKLHKLKMTCYDPLSFVKQSLRESLSSPPKSLT- 361
Query: 237 LIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLH 58
++M +R L+TPSK++ +GPE SN V +HF+ +ASDFIRV+FV+ED +L
Sbjct: 362 -----ENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLP 416
Query: 57 ANALTVKLKTEQDILERPW 1
ANA++ + ++ I +P+
Sbjct: 417 ANAISTSI--QRGIFAKPF 433
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 223 bits (567), Expect = 2e-55
Identities = 134/440 (30%), Positives = 236/440 (53%), Gaps = 6/440 (1%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 1126
+S TV + N+P++ A +L++FL+S LG +VF+ +I ++ NWKS G VQF+
Sbjct: 8 LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67
Query: 1125 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSVGNMVSESALSVLWSAKD 946
++ + S L+ + L + D D I RP + + GVL G M+S+ +SVL S +
Sbjct: 68 SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFMLSDHRMSVLESWEG 127
Query: 945 CNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 769
Q +++ F+V H + Y++E +DI + Y + ED +LLK++ G RI+
Sbjct: 128 IAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIY 187
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
+K + + + + + ++F KED + W+RTTDFS ++G ++ FC +
Sbjct: 188 KKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVF 247
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
+ P ++ +L +E+ L VP V+ LPY+ F+LNSLVH +S +
Sbjct: 248 TSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLAS 307
Query: 408 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLIV 229
+ E ++L + + + +L K TC +P ++++++L+ L N + L+
Sbjct: 308 VDDELIDLLADLDEETR--AVVFQKLHKMSFTCYEPLKFVKTQLHVLSN----KKKGLLQ 361
Query: 228 SP-----SKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 64
SP ++M +R L+TP+K+Y +GPEL SN V +HF+ ASDF+R++FV+E+ +
Sbjct: 362 SPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNK 421
Query: 63 LHANALTVKLKTEQDILERP 4
L NA V ++ I +P
Sbjct: 422 LPTNA--VSTGVQKGIFSKP 439
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 221 bits (563), Expect = 5e-55
Identities = 132/431 (30%), Positives = 234/431 (54%), Gaps = 9/431 (2%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 1117
TV + N+P T A++L+ +L++ +G SVF+ +I ++ TNWKS G VQF+ +K
Sbjct: 10 TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69
Query: 1116 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYS---VSGGVLSVGNMVSESALSVLWSAKD 946
+ L++ + L + D I RP ++ G L G + +SVL S +
Sbjct: 70 LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129
Query: 945 CNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTP-CILLKLQTGARIF 769
+ Q++ F+V HG + +K+E+ ++I Y +++ P +LLKL+ G RI+
Sbjct: 130 VRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIY 189
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
QK++ + + + ++FCKE+ + W+RTTDFS ++G ++ F +
Sbjct: 190 QKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVF 249
Query: 588 ENLPFF-EMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAP 412
+ P + E ++D L + + SP VP V+ LPY+ F+LNSLVH +S
Sbjct: 250 RSFPLYRENLKDLSLEDGEKFCSP-TETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLA 308
Query: 411 TLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQL 244
++ E ++L + + + +L K +TC +P ++++++L+ L K+ P Q
Sbjct: 309 SVNDELIDLLASLDAETK--AVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQ 366
Query: 243 NSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGR 64
L+ ++M +R L+TPSK+Y +GPEL SN V +HF+ +ASDF+R++FV+ED +
Sbjct: 367 KRLV---DNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSK 423
Query: 63 LHANALTVKLK 31
L NA+++ LK
Sbjct: 424 LPNNAISITLK 434
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 221 bits (562), Expect = 7e-55
Identities = 127/425 (29%), Positives = 231/425 (54%), Gaps = 4/425 (0%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 1126
+S+TV + N+P++ A +L++FL+S +G +VF+ +I ++ NWKS G VQF+
Sbjct: 9 LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68
Query: 1125 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSVGNMVSESALSVLWSAKD 946
++ + S L+ + L + D D I RP + + GVL G ++S+ +SVL S +
Sbjct: 69 SRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGVLYAGFVLSDHRMSVLESWEG 128
Query: 945 CNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 769
+++ F+V H + Y++E +DI + Y + ED +LLK++ G RI+
Sbjct: 129 VAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIY 188
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
+K + + + + + ++FCKED + W+RTTDFS ++G ++ FC +
Sbjct: 189 KKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVF 248
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
++ P ++ +L +E+ VP V+ LPY+ F+LNSLVH +S +
Sbjct: 249 KSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLAS 308
Query: 408 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTN---PKQLNS 238
+ E ++L + + +L K TC +P ++++++L+ L N P+
Sbjct: 309 VDDELIDLLAGLDEETR--AVIFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQK 366
Query: 237 LIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLH 58
+ ++M +R L+TP+K+Y +GPEL SN V +HF+ HASDF+R++FV+E+ +L
Sbjct: 367 RLT--DSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLP 424
Query: 57 ANALT 43
NA++
Sbjct: 425 TNAVS 429
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 221 bits (562), Expect = 7e-55
Identities = 143/430 (33%), Positives = 226/430 (52%), Gaps = 8/430 (1%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 1117
TV + N+P+T +A EL FL+S LG ++++ +I TE NWKS G VQF+
Sbjct: 8 TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67
Query: 1116 CNRSTKGGLIIEGYHLDVKLRDKDHIHRPCY---SVSGGVLSVGNMVSESALSVLWSAKD 946
S +G L+ G L + D I RP V GVL VG +V + + VL S +
Sbjct: 68 DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEG 127
Query: 945 CNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 766
+ ++ F+V E YK+E+ DD+ +SA +LLKL+ +IFQ
Sbjct: 128 VKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQ 187
Query: 765 KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFVE 586
K + S + + + KED + W+RTTDFS ++GQ++ FC + G
Sbjct: 188 KFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFA 247
Query: 585 NLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPTL 406
+ P+++ + EL +E LVP V+ G L Y+I F+LNSLVH +S +
Sbjct: 248 SFPYYKDL-TELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISLAAV 306
Query: 405 TCEFFNVLTNPNYSPLHINI-ALSELFKSMTTCLQPNRWLQSRLY----ELKNTNPKQLN 241
+ +L+N P+ I L +L K +T P +++++ + +KN P +
Sbjct: 307 DTDLIEILSN---LPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHS 363
Query: 240 SLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRL 61
L + ++M +RVLVTPSK+Y +GPEL SN V +H++ +ASDF+RVSFV+ED +L
Sbjct: 364 RL---TNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKL 420
Query: 60 HANALTVKLK 31
+NAL++ ++
Sbjct: 421 PSNALSMSIR 430
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 218 bits (556), Expect = 4e-54
Identities = 134/437 (30%), Positives = 224/437 (51%), Gaps = 5/437 (1%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 1117
TV + N+P+T +A +L FL+S LG SVF+ +I TER NWKS G VQF + LA K+
Sbjct: 9 TVRVTNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTS--LAAKL 66
Query: 1116 CNR--STKGGLIIEGYHLDVKLRDKDHIHRPC---YSVSGGVLSVGNMVSESALSVLWSA 952
+ S + +L + D + P + GVL G M+ + ++VL S
Sbjct: 67 VAQALSLSNNFVFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQSW 126
Query: 951 KDCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARI 772
+ A + ++ F+V + YK+E+ +D+ T Y +D LL+L+ G +I
Sbjct: 127 EGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPKI 186
Query: 771 FQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAF 592
++++S F A + + CKED + W+RTTDF E+ ++G ++ C D
Sbjct: 187 YKRISRPSKFVA---DRYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSSDT 243
Query: 591 VENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAP 412
+ P++ +L++E+ VP ++ P G L Y+I F+LNSLVH +S
Sbjct: 244 FRSFPYYREGMKDLILEDSDEFCSVSETVPLIKCPAGSNLSYEILFQLNSLVHMQKISFA 303
Query: 411 TLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLI 232
+ + + N N + +L K +TC P ++ + L+ +++
Sbjct: 304 SADADLIEYFGSLNIDTA--NAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKNPSSAIK 361
Query: 231 VSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHAN 52
LM +R L+TPSK+Y +GPEL SN V ++F+ +ASDF+RV+FV+ED G+LH +
Sbjct: 362 RLTENSLMSCHRALITPSKIYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPH 421
Query: 51 ALTVKLKTEQDILERPW 1
++ + EQ I +P+
Sbjct: 422 VVSTSI--EQGIFAKPY 436
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 218 bits (556), Expect = 4e-54
Identities = 130/440 (29%), Positives = 234/440 (53%), Gaps = 8/440 (1%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 1117
TV + N+P++ A +L+ FL+S +G SVF+ +I ++ +NWKS GS VQF+ +K
Sbjct: 10 TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69
Query: 1116 CNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVLWSAKD 946
+ S+ L+ + L + D + RP C + G L G + +SV+ S +
Sbjct: 70 LSLSSNDKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEG 129
Query: 945 CNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIFQ 766
+ ++ F+V H + +K+E+ ++I + ++ + +LLKL+ G RI+Q
Sbjct: 130 VKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQ 189
Query: 765 KLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFVE 586
++ + + + ++FCKED W+RTTDFS ++G ++ FC +
Sbjct: 190 RMEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFR 249
Query: 585 NLPFF-EMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
+ P + E ++D L + + SP VP V+ LPY+ F+LNSLVH +S +
Sbjct: 250 SFPLYRENLKDLSLEDGEEFCSP-TETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLAS 308
Query: 408 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYEL----KNTNPKQLN 241
+ E +++ + + + +L K +TC +P R+++++L+ L K+ P
Sbjct: 309 VDDELIDLIASLDDETK--AVIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQK 366
Query: 240 SLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRL 61
L ++M +R L+TPSK+Y +GPEL SN V +HF+ +ASDF+R++FV+ED +L
Sbjct: 367 RL---ADNNIMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKL 423
Query: 60 HANALTVKLKTEQDILERPW 1
NA++ L ++ I +P+
Sbjct: 424 PINAVSTSL--QKGIFAKPF 441
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 218 bits (556), Expect = 4e-54
Identities = 140/436 (32%), Positives = 224/436 (51%), Gaps = 8/436 (1%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 1126
M T+ + P +V ++ F++ GEG+VF+ +++ + + I+QF A
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFA-IIQFTTANSA 59
Query: 1125 TKICNRSTK--GGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVL 961
T + +R+ L +L + ++D + RP +S+ LS G +S+ SVL
Sbjct: 60 TSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVL 119
Query: 960 WSAKDCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTG 781
W +D F +K+ F H YK+EL ++I + + T +L++L
Sbjct: 120 WKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179
Query: 780 ARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKH 601
R+F+ + S + + F F K+ D QWIR DF+ +GQ+S CL+ NGR+
Sbjct: 180 PRVFEN-DVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238
Query: 600 PAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGIL 421
P F EN ++E + + ++ V S LVP V P GV + YDI FK+NSLV H L
Sbjct: 239 PNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACL 298
Query: 420 SAPTLTCEFFNVLTNPNYSPLH-INIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPK 250
+ P L +F+ L +P P I AL +++ S C +P +WL Q + Y +P+
Sbjct: 299 AGPALDGDFYR-LVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR 357
Query: 249 QLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDL 70
S +S L+ RV +TP KVYF GPE+N SNRV RHF +H +F+RVSFVDE+L
Sbjct: 358 ---SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414
Query: 69 GRLHANALTVKLKTEQ 22
+L + L+ + + ++
Sbjct: 415 DKLFSTDLSSRSQNKK 430
>gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
Length = 1144
Score = 218 bits (555), Expect = 5e-54
Identities = 137/440 (31%), Positives = 227/440 (51%), Gaps = 22/440 (5%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 1120
T+ + P TV A + + L+ I+G G+VF+ +++ + + S IVQF + A+
Sbjct: 5 TIQVSGFPSTVNADHVKDLLEQIVGTGNVFAIKLRPPKNISANSKSFAIVQFQSEAHASL 64
Query: 1119 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVLWSAK 949
+ N + + L HL + ++D + RP +++ L G ++ E ALSVLWS
Sbjct: 65 VLNAARRNALRSGSNHLKARYAERDIVPRPRTTIFNLQDATLHFGCLLREKALSVLWSGT 124
Query: 948 DCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKL------- 790
+ + EF F ++I F +++ + YK+EL + I + +L++L
Sbjct: 125 NVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLRDFDNLS 184
Query: 789 ---------QTGARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQAS 637
Q +I+++ ++R S S Y F + ++D D QW RTTDF+ + ++GQ+
Sbjct: 185 WRNVSVSQVQAAPKIYEQ-NIRRSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSY 243
Query: 636 VFCLDFANGRKHPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIA 457
+ CL+ + P E ++E+ D ++ S VP V+ +PY+I
Sbjct: 244 ILCLELPHICYLPNIREYFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSHHFTDVPYEIL 303
Query: 456 FKLNSLVHHGILSAPTLTCEFFNVLTNPNYSPL-HINIALSELFKSMTTCLQPNRWLQSR 280
FK+N LV +G LS PTL F+ L +P Y + HI AL ++ TCL P +WL S
Sbjct: 304 FKINHLVQNGTLSGPTLDDNFYR-LVSPGYECIDHIKRALEKMSYLKKTCLNPTKWL-SE 361
Query: 279 LYELKNTNPKQLNSLIVSPSKD-LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASD 103
Y+ K + L ++ D L+ YRV +TP+KVYF GPE+N SNRV RH++ +
Sbjct: 362 QYKKKRRSRYMLKLPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRHYAADLDN 421
Query: 102 FIRVSFVDEDLGRLHANALT 43
F+R+SFVDED +L + L+
Sbjct: 422 FLRISFVDEDCEKLRSTDLS 441
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 218 bits (555), Expect = 5e-54
Identities = 144/435 (33%), Positives = 224/435 (51%), Gaps = 8/435 (1%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCI---VQFDNP 1135
M T+ + +P V A+E+ EFL+ GEG++ + +IK KSG S VQF +
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQP----KSGVSMTHAKVQFTSL 56
Query: 1134 GLATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSV 964
LA I + + + L G +L + D D I +P +S+ L G +S V
Sbjct: 57 RLAELIISLAKQ--LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCV 114
Query: 963 LWSAKDCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQT 784
LW A + + +F F +K F++ HG E+YK+EL ++I +T +L++L
Sbjct: 115 LWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLD 174
Query: 783 GARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRK 604
+I++K SA + KE D QW+R DF+ +C++GQ+S CL+ +G +
Sbjct: 175 APQIYEK-----DVSA-----LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQ 224
Query: 603 HPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGI 424
P F EN ++ + ++E+ S HLVP V P G LP+ I FK+N+LV +G
Sbjct: 225 LPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGC 284
Query: 423 LSAPTLTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWL--QSRLYELKNTNPK 250
LS PTL FF + + I AL +L+ C +P RWL Q R Y K
Sbjct: 285 LSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQV--- 341
Query: 249 QLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDL 70
S +S L+ RV +TP KVYF GPE+N SNRV R++ + +F+RVSF+DE+
Sbjct: 342 -AGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENS 400
Query: 69 GRLHANALTVKLKTE 25
++H+ ++ ++ E
Sbjct: 401 EKIHSTVISPRMSNE 415
>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
italica]
Length = 1123
Score = 218 bits (554), Expect = 6e-54
Identities = 138/439 (31%), Positives = 228/439 (51%), Gaps = 10/439 (2%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGL 1129
M T+ + T A + +FL+ I G G+V++ +++ R S IVQF
Sbjct: 1 MGRTIQVSGFALTDSAEYVKDFLERIAGAGTVYALKLRHPRNITATSKAFAIVQFQTQEC 60
Query: 1128 ATKICNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVLW 958
A+ + N + + L +L + D+D + RP +S+ L +G +V E+ L L+
Sbjct: 61 ASLVENAAQRNALRSRCIYLKARPADRDIVPRPRIAMFSLDAAALHLGCLVKENILYTLF 120
Query: 957 SAKDCNAEFSFQGQKISFYVVHGREDYKIELRLDDI-----SATSAYINEDTDTPCILLK 793
S ++ + +F F +KI FY+ + YK+EL + I AY+++ T +L +
Sbjct: 121 SVRNISVQFGFDMKKIYFYLSYNLIKYKLELSYESIWEMQLHRPPAYLSQ---TKFLLFQ 177
Query: 792 LQTGARIFQKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFAN 613
+Q +I++ L R S Y F + ++D D QW RT DF+ + ++GQ+S+ CL+
Sbjct: 178 VQAAPKIYELLP-RRSGLMYEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQ 236
Query: 612 GRKHPAFVENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVH 433
+ P + +++ + + S VP V+ PD + +PY+I FK+N LV
Sbjct: 237 QCELPNIADYFVYYKEHNLDFECQKGYSYSCGNSFVPIVKSPDYIEVPYEILFKINHLVQ 296
Query: 432 HGILSAPTLTCEFFNVLTNPNYSPL-HINIALSELFKSMTTCLQPNRWLQSRLYELKNTN 256
+G LS PTL FF L +P + P+ HI AL ++ +TCL P WL + +++ +
Sbjct: 297 NGTLSGPTLDDNFF-CLVSPKHVPIDHIKRALLKMSYLKSTCLNPTNWLALQYSKIRKSR 355
Query: 255 PKQLNSLIVSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDE 76
S +S L+ +RV VTP+KVYF GPE+N SNRV RHFS +F+R+SFVDE
Sbjct: 356 YALQRSSGISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADLDNFLRISFVDE 415
Query: 75 DLGRLHANALTVKLKTEQD 19
D +L + L+ + + D
Sbjct: 416 DCEKLRSVDLSPRSASGND 434
>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 218 bits (554), Expect = 6e-54
Identities = 131/424 (30%), Positives = 228/424 (53%), Gaps = 6/424 (1%)
Frame = -2
Query: 1296 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERT-NWKSGGSCIVQFDNPGLATK 1120
T+ + P TV A + + L+ I+G G+VF+ +++ + + S IVQF + A+
Sbjct: 5 TLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHASL 64
Query: 1119 ICNRSTKGGLIIEGYHLDVKLRDKDHIHRP---CYSVSGGVLSVGNMVSESALSVLWSAK 949
+ N + + L ++L + ++D + RP +++ G L G ++ E LSVLWS
Sbjct: 65 VLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVLWSGT 124
Query: 948 DCNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAYINEDTDTPCILLKLQTGARIF 769
+ + EF F ++I F +++ + YK+EL + I + +L+++Q +I+
Sbjct: 125 NVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIY 184
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
++ ++R S S Y F + ++D D QW RTTDF+ + ++GQ+ + CL+ + P
Sbjct: 185 EQ-NIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPNIR 243
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
E ++E+ D ++ S VP V+ +PY+I FK+N LV +G LS PT
Sbjct: 244 EYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPT 303
Query: 408 LTCEFFNVLTNPNYSPL-HINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQLNSLI 232
L F+ L +P Y + I AL ++ TCL P WL + +++ + + L S
Sbjct: 304 LDDNFYR-LVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRS--RVLTSPN 360
Query: 231 VSPSKD-LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHA 55
++ D L+ YRV +TP+KVYF GPE+N SNRV R+++ +F+R+SFVDED +L +
Sbjct: 361 ITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRS 420
Query: 54 NALT 43
L+
Sbjct: 421 TDLS 424
>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 217 bits (553), Expect = 8e-54
Identities = 133/437 (30%), Positives = 236/437 (54%), Gaps = 2/437 (0%)
Frame = -2
Query: 1305 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 1126
+S TV + N+PR+ A +L+ F++S +G +VF+ +I ++ NWKS G+ VQF+
Sbjct: 8 LSHTVSVFNIPRSATAKDLLHFIESKVGSSTVFALEIFSDNVNWKSRGAGRVQFEALDAK 67
Query: 1125 TKICNRSTKGGLIIEGYHLDVKLRDKDHIHRPCYSVSGGVLSVGNMVSESALSVLWSAKD 946
++ + S L+I + L + +D I RP + + GVL G M+S+ +SVL S +
Sbjct: 68 SRALSLSQLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGLMLSDDRMSVLESWEG 127
Query: 945 CNAEFSFQGQKISFYVVHGREDYKIELRLDDISATSAY-INEDTDTPCILLKLQTGARIF 769
Q +K+ F V+H + Y++E+ +DI + Y + + +LLKL+ G +I+
Sbjct: 128 VAGLVVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLGAEGKLNALLLKLKFGPKIY 187
Query: 768 QKLSLRESFSAYLKNHFKFCKEDVDVQWIRTTDFSENCAVGQASVFCLDFANGRKHPAFV 589
+K + + + + + FCKED + W+RTTDFS ++G ++ FC + A +
Sbjct: 188 KKKMGPDVATKFRNDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVF 247
Query: 588 ENLPFFEMMQDELLMENDVLLSPCPHLVPYVRVPDGVTLPYDIAFKLNSLVHHGILSAPT 409
+LP ++ +L++E+ VP V+ LPY+ F+LNSLVH +S +
Sbjct: 248 TSLPLYKENLRDLVLEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLAS 307
Query: 408 LTCEFFNVLTNPNYSPLHINIALSELFKSMTTCLQPNRWLQSRLYELKNTNPKQ-LNSLI 232
+ E ++L + + +L + TC P ++++++L+ L N Q L+S
Sbjct: 308 VDDELIDLLGGLDEEIR--AVIFQKLHQMGFTCYDPLKFVKTQLHVLSNKKRSQPLSSQK 365
Query: 231 VSPSKDLMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHAN 52
++M +R LVTP+K+Y +GPEL SN V +HF+ ASDF+R++FV+E+ +L
Sbjct: 366 RLIDNNIMSCHRALVTPTKIYCLGPELETSNHVVKHFASCASDFMRITFVEENWNKLPNY 425
Query: 51 ALTVKLKTEQDILERPW 1
A V ++ I +P+
Sbjct: 426 A--VSTGVQKGIFSKPF 440