BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00024904
         (1074 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   162   2e-37
emb|CAN74302.1| hypothetical protein VITISV_031363 [Vitis vinifera]   149   2e-33
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...    86   1e-32
emb|CAN65575.1| hypothetical protein VITISV_001033 [Vitis vinifera]   142   2e-31
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      138   3e-30
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      138   4e-30
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      137   6e-30
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      135   3e-29
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      135   4e-29
gb|ABM55238.1| integrase [Beta vulgaris]                              133   1e-28
gb|ABH08430.1| putative integrase [Beta vulgaris]                     133   1e-28
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   132   3e-28
gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japoni...   131   5e-28
emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]         130   7e-28
gb|ABF94836.1| retrotransposon protein, putative, unclassified [...   130   7e-28
gb|ABF93543.1| retrotransposon protein, putative, unclassified [...   130   7e-28
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   130   9e-28
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   127   1e-26
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                126   2e-26
gb|ABF67946.1| putative Opie4 pol protein [Zea mays]                  125   4e-26

>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  162 bits (411), Expect = 2e-37
 Identities = 113/348 (32%), Positives = 171/348 (49%), Gaps = 14/348 (4%)
 Frame = -2

Query: 1058 LNASTFSNYWILDSGCTTHMTRNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKL 882
            L A      W LDSGC+ HMT  + L   +T  DGG V FG N+T K I  G   I    
Sbjct: 661  LRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTG--TIGNSS 718

Query: 881  SSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSIT-AGKRMENLYILN 705
             S   V LV  + +NLL I+  CDNG +V F +  C + + ++ SIT  GKR+EN+Y +N
Sbjct: 719  ISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKIN 778

Query: 704  -------EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTN 546
                   +  CLL   +   + HK L   ++  I  + K   V+ LP+  + + +     
Sbjct: 779  FSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGAC 838

Query: 545  KQGHLLK-----KKNIQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSL 381
            ++G ++K     K  +       L  ++         L G+K+   +    +     + +
Sbjct: 839  QKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI 898

Query: 380  KRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIP 201
            K K Y            ++E   K   VR D GGEF +  F+ FCE HGI H+FS+ R P
Sbjct: 899  KSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTP 958

Query: 200  Q*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR 57
            Q N ++ RKNRT+ E AR M +++ + K FW +AV+T+ Y+ NR  +R
Sbjct: 959  QQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIR 1006


>emb|CAN74302.1| hypothetical protein VITISV_031363 [Vitis vinifera]
          Length = 556

 Score =  149 bits (376), Expect = 2e-33
 Identities = 119/371 (32%), Positives = 171/371 (46%), Gaps = 36/371 (9%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGE-VLL 858
            W LDSGC+ HMT +      +T   GG V FG+NE  + I  G+ NI    SS  E VLL
Sbjct: 131  WFLDSGCSRHMTGDESKFXFLTKRKGGYVTFGDNEKGRII--GQDNIGNGTSSLIESVLL 188

Query: 857  VQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILN------ED 699
            V  + +NLL I+ LCD G +V F+ + C I D   + +I  G R +N+Y +N       D
Sbjct: 189  VDGLKHNLLSISQLCDKGFKVIFEASHCIIKDIQNDKTIFMGXRCDNVYAINISKYDGHD 248

Query: 698  TCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFST----QSCQTTNKQGHL 531
             C     + + + H+ L   +   I  L K   VR LP   F      + CQ   +  + 
Sbjct: 249  RCFSSMHDQSWLWHRRLGHANMDLISQLNKDELVRGLPKINFQKDKVCEXCQMGKQIKNS 308

Query: 530  LKKKN-IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYTLSX 354
             K K  I       L  ++     +   L G  ++ ++    +       L +K      
Sbjct: 309  FKNKXFISTTRPLELLHMDLFGPSRTPSLGGKSYAFFIVDDFSRYTWVFFLSQKNEAFYE 368

Query: 353  XXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRK 174
                    +NE      C+R   G EF +++F+ +C  HGI+H FSA R PQ N ++ RK
Sbjct: 369  VSKFCNKVQNEKGFTITCIRSYHGREFQNIDFEDYCNEHGINHNFSAPRTPQQNGVVERK 428

Query: 173  NRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR--------------------- 57
            NRT+ E AR M N++ +PK FWV+AV+T+ Y  N  LLR                     
Sbjct: 429  NRTLQEMARTMLNENNLPKYFWVEAVNTSCYXLNIILLRPILKKTPYELXKNKKPNISYF 488

Query: 56   -VFGSECFIHN 27
             VFG +CFI N
Sbjct: 489  KVFGCKCFILN 499


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1198

 Score = 85.5 bits (210), Expect(3) = 1e-32
 Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 22/138 (15%)
 Frame = -2

Query: 383 LKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRI 204
           LK K   L          EN++ RK K +R D GGE++S EF+K+CE+ GI  Q +A   
Sbjct: 506 LKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYS 565

Query: 203 PQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR--------------- 69
            Q N +  RKNRT+ + A  M     +PK+FW +AV+T IY+ NR               
Sbjct: 566 AQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAW 625

Query: 68  -------GLLRVFGSECF 36
                  G +RVFG  C+
Sbjct: 626 YGKKPVIGHMRVFGCICY 643



 Score = 62.0 bits (149), Expect(3) = 1e-32
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNI-TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTG----- 870
            W++DSGCT HM  +  L + + ++Y   +  GN    +   KG + +    ++ G     
Sbjct: 277  WVIDSGCTNHMAADPNLFREMDSSYHAKIHMGNGSIAQSEGKGTVAVQ---TADGPKFIK 333

Query: 869  EVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMEN----LYILNE 702
            +VLLV  +  NLL I  L ++G  V F+   C I D + N + A   ME     L  +N 
Sbjct: 334  DVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCKILDRKNNRLVAKINMEKNINFLLRMNH 393

Query: 701  DT--CLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQ 555
             T   L   I+ + + HK +  ++Y  +  L     V+ LP     +  C+
Sbjct: 394  PTQMALRSEIDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCE 444



 Score = 40.8 bits (94), Expect(3) = 1e-32
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = -1

Query: 549 KQTRTSFKKK-EYTSNGKLDIIHIELCGPM*ALRFRRNKIFMLVVDDFSMMTWIAFLKEK 373
           KQ R SF     + ++  L+++H ++ G +  +    N  F+  +DD++ M W+ FLKEK
Sbjct: 450 KQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEK 509


>emb|CAN65575.1| hypothetical protein VITISV_001033 [Vitis vinifera]
          Length = 440

 Score =  142 bits (359), Expect = 2e-31
 Identities = 116/379 (30%), Positives = 170/379 (44%), Gaps = 36/379 (9%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGE-VLL 858
            W LDSGC+ +MT +      +    GG V FG+N   + I +G  NI    SS  E VLL
Sbjct: 61   WFLDSGCSRYMTGDESKFSXLIKKXGGYVTFGDNAKGRIIGQG--NIGNDTSSLIESVLL 118

Query: 857  VQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILN------ED 699
            V  + + LL I+ LC+ G +V F+ + C I D   + +I  G R +N+Y +N       D
Sbjct: 119  VDGLKHILLSISQLCEKGFKVIFEASHCIIKDIQNDKTIFMGHRCDNVYAINISKYDGYD 178

Query: 698  TCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLK-- 525
             C     + + + H  L   +   I  L KY  VR LP   F           G  +K  
Sbjct: 179  RCFSSMHDQSWLWHXRLGHANMDLISQLNKYELVRGLPKLNFKKDKVCEAYXVGKXIKNS 238

Query: 524  ---KKNIQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYTLSX 354
               K  I       L  ++     +   L G   +  +    +       L +K      
Sbjct: 239  FKNKNFISXSRPLELLHMDLFGPSRTPSLGGKSHAYVIVDDXSRYTWVLFLSQKNEAFYE 298

Query: 353  XXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRK 174
                    +NE      C+R D G EF +++F+++C  HGI+H FSA+R  Q N ++ RK
Sbjct: 299  FSKFCNNVQNEKDFTITCIRSDHGREFENIDFEEYCNEHGINHNFSASRTLQQNGVVERK 358

Query: 173  NRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR--------------------- 57
            NRT+ E AR M N++ +PK FW +AV+T+ Y+ NR LLR                     
Sbjct: 359  NRTLQEMARTMLNENNLPKYFWAEAVNTSXYVLNRILLRXILKKNPYELWKNXKPNISYF 418

Query: 56   -VFGSECFIHNNDLTLVKW 3
             VFG +CFI N +  L K+
Sbjct: 419  KVFGCKCFILNTEDNLGKF 437


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  138 bits (348), Expect = 3e-30
 Identities = 111/372 (29%), Positives = 169/372 (45%), Gaps = 39/372 (10%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            W LDSGC+ HMT  ++ + NI    T+Y   V FG+    K I  GKL +H  L S  +V
Sbjct: 562  WYLDSGCSRHMTGVKEFLLNIEPCSTSY---VTFGDGSKGKIIGMGKL-VHDGLPSLNKV 617

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYILN------ 705
            LLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+        
Sbjct: 618  LLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSY 677

Query: 704  EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFS----TQSCQTTNKQG 537
              TCL    +   I H+    +H   +  ++   AVR +P+ K         CQ   KQ 
Sbjct: 678  SSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ-IGKQV 736

Query: 536  HLLKKKNIQAMGS*TLYIL--NFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
             +  +K      S  L +L  + +   ++  L G +++  +    +       ++ K  T
Sbjct: 737  KMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSET 796

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       + E     K +R D G EF +  F +FC S GI H+FSA   PQ N I+
Sbjct: 797  FEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIV 856

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR------------------ 57
             RKNRT+ EAAR M +  E+P   W +A++T  Y+ NR  LR                  
Sbjct: 857  ERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSV 916

Query: 56   ----VFGSECFI 33
                +FGS C+I
Sbjct: 917  KHFHIFGSPCYI 928


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  138 bits (347), Expect = 4e-30
 Identities = 110/372 (29%), Positives = 170/372 (45%), Gaps = 39/372 (10%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            W LDSGC+ HMT  ++ + NI    T+Y   V FG+    K    GKL +H  L S  +V
Sbjct: 563  WYLDSGCSRHMTGVKEFLVNIEPCSTSY---VTFGDGSKGKITGMGKL-VHEGLPSLNKV 618

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYI------LN 705
            LLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+       +
Sbjct: 619  LLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQESSH 678

Query: 704  EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFS----TQSCQTTNKQG 537
              TCL    +   I H+    +H   +  ++   AVR +P+ K         CQ   KQ 
Sbjct: 679  SSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ-IGKQV 737

Query: 536  HLLKKKNIQAMGS*TLYIL--NFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
             +  +K      S  L +L  + +   ++  L G +++  +    +       ++ K  T
Sbjct: 738  KMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDT 797

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       + E     K +R D G EF + +F +FC S GI H+FSA   PQ N I+
Sbjct: 798  FEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIV 857

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR------------------ 57
             RKNRT+ EAAR M +  E+P   W +A++T  Y+ NR  LR                  
Sbjct: 858  ERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTV 917

Query: 56   ----VFGSECFI 33
                +FGS C+I
Sbjct: 918  KHFHIFGSPCYI 929


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  137 bits (346), Expect = 6e-30
 Identities = 111/372 (29%), Positives = 170/372 (45%), Gaps = 39/372 (10%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            W LDSGC+ HMT  ++ + NI    T+Y   V FG+    K I  GKL +H  L S  +V
Sbjct: 562  WYLDSGCSRHMTGVKEFLLNIEPCSTSY---VTFGDGSKGKIIGMGKL-VHDGLPSLNKV 617

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYILN------ 705
            LLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+        
Sbjct: 618  LLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSY 677

Query: 704  EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFS----TQSCQTTNKQG 537
              TCL    +   I H+    +H   +  ++  +AVR +P+ K         CQ   KQ 
Sbjct: 678  SSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQ-IGKQV 736

Query: 536  HLLKKKNIQAMGS*TLYIL--NFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
             +  +K      S  L +L  + +   ++  L G +++  +    +       ++ K  T
Sbjct: 737  KMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGT 796

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       + E     K +R D G EF +  F +FC S GI H+FSA   PQ N I+
Sbjct: 797  FEVFKKLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIV 856

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR------------------ 57
             RKNRT+ EAAR M +  E+P   W +A++T  Y+ NR  LR                  
Sbjct: 857  ERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSV 916

Query: 56   ----VFGSECFI 33
                +FGS C+I
Sbjct: 917  KHFHIFGSPCYI 928


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  135 bits (340), Expect = 3e-29
 Identities = 109/372 (29%), Positives = 168/372 (45%), Gaps = 39/372 (10%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            W LDSGC+ HMT  ++ + NI    T+Y   V FG+    K    GKL +H  L S  +V
Sbjct: 562  WYLDSGCSRHMTGVKEFLVNIEPCSTSY---VTFGDGSKGKITGMGKL-VHDGLPSLNKV 617

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYILN------ 705
            LLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+        
Sbjct: 618  LLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSY 677

Query: 704  EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFS----TQSCQTTNKQG 537
              TCL    +   I H+    +H   +  ++   AVR +P+ K         CQ   KQ 
Sbjct: 678  SSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ-IGKQV 736

Query: 536  HLLKKKNIQAMGS*TLYIL--NFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
             +  +K      S  L +L  + +   ++  L G +++  +    +       ++ K  T
Sbjct: 737  KMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDT 796

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       + E     K +R D G EF + +F +FC S GI H+FSA   PQ N I+
Sbjct: 797  FEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIV 856

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR------------------ 57
             RKNRT+ EA R M +  E+P   W +A++T  Y+ NR  LR                  
Sbjct: 857  ERKNRTLQEATRVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTV 916

Query: 56   ----VFGSECFI 33
                +FGS C+I
Sbjct: 917  KHFHIFGSPCYI 928


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  135 bits (339), Expect = 4e-29
 Identities = 101/341 (29%), Positives = 159/341 (46%), Gaps = 16/341 (4%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKLIKNI----TAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            W LDSGC+ HMT  ++ + NI    T+Y   V FG+    K    GKL +H  L S  +V
Sbjct: 536  WYLDSGCSRHMTGVKEFLVNIEPCSTSY---VTFGDGSKGKITGMGKL-VHDGLPSLNKV 591

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKR-MENLYILN------ 705
            LLV+ ++ NL+ I+ LCD G  V F ++ C + + +   +  G R  +N Y+        
Sbjct: 592  LLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSY 651

Query: 704  EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLK 525
              TCL    +   I H+    +H   +  ++   AVR +P+ K          + G  +K
Sbjct: 652  SSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVK 711

Query: 524  KKNIQAMGS*TLYIL-----NFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYTL 360
              N +     T  +L     + +   ++  L   +++  +    +       ++ K  T 
Sbjct: 712  MSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTF 771

Query: 359  SXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMG 180
                      + E     K +R D G EF + +F +FC S GI H+FSA   PQ N I+ 
Sbjct: 772  EVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVE 831

Query: 179  RKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR 57
            RKNRT+ EAAR M +  E+P   W +A++T  Y+ NR  LR
Sbjct: 832  RKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLR 872


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  133 bits (335), Expect = 1e-28
 Identities = 108/375 (28%), Positives = 170/375 (45%), Gaps = 36/375 (9%)
 Frame = -2

Query: 1040 SNYWILDSGCTTHMTRNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            +N W LDSGC+ HMT ++    ++T Y+GG V FG+N+      KG +   GK+      
Sbjct: 568  NNTWYLDSGCSKHMTGDKTKFLSLTTYEGGSVTFGDNK------KGNIVAMGKV------ 615

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILNED---- 699
              V+ + +NLL I+  CD G  V+F +  C I +   +  I  G R  N YI++ D    
Sbjct: 616  --VEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQ 673

Query: 698  ---TCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFST-QSCQTTNKQGHL 531
               TCL    +++ + HK L    +S +  L   + V  LPS KF   Q C    +   +
Sbjct: 674  INLTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVCDACARGKQV 733

Query: 530  LKKKNIQAMGS*TLYI-LNFVDQC---KL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
                  + + S T  + L  +D C   ++    G ++   +    +       L  K  T
Sbjct: 734  RSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSSKDET 793

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       +N +  K   +R D G EF + +FD     +G+ H FSA R PQ N ++
Sbjct: 794  YDEFLVFAKRVQNLSGHKIMHIRSDHGKEFENYKFDDLSRDNGLDHNFSAPRTPQQNGVV 853

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 60
             RKNRT+ E +  M   SE+P+ FW +AV+T  ++ NR ++                   
Sbjct: 854  ERKNRTLEEMSGTMLIASELPRNFWAEAVNTACHIINRAMMRPIINKTPYELYFGKKPNI 913

Query: 59   ---RVFGSECFIHNN 24
               R FG +C++HNN
Sbjct: 914  TYFRTFGCKCYVHNN 928


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  133 bits (335), Expect = 1e-28
 Identities = 108/375 (28%), Positives = 170/375 (45%), Gaps = 36/375 (9%)
 Frame = -2

Query: 1040 SNYWILDSGCTTHMTRNRKLIKNITAYDGG-V*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            +N W LDSGC+ HMT ++    ++T Y+GG V FG+N+      KG +   GK+      
Sbjct: 568  NNTWYLDSGCSKHMTGDKTKFLSLTTYEGGSVTFGDNK------KGNIVAMGKV------ 615

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFD-NEENSITAGKRMENLYILNED---- 699
              V+ + +NLL I+  CD G  V+F +  C I +   +  I  G R  N YI++ D    
Sbjct: 616  --VEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQ 673

Query: 698  ---TCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFST-QSCQTTNKQGHL 531
               TCL    +++ + HK L    +S +  L   + V  LPS KF   Q C    +   +
Sbjct: 674  INLTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVCDACARGKQV 733

Query: 530  LKKKNIQAMGS*TLYI-LNFVDQC---KL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
                  + + S T  + L  +D C   ++    G ++   +    +       L  K  T
Sbjct: 734  RSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSSKDET 793

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       +N +  K   +R D G EF + +FD     +G+ H FSA R PQ N ++
Sbjct: 794  YDEFLVFAKRVQNLSGHKIMHIRSDHGKEFENYKFDDLSRDNGLDHNFSAPRTPQQNGVV 853

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 60
             RKNRT+ E +  M   SE+P+ FW +AV+T  ++ NR ++                   
Sbjct: 854  ERKNRTLEEMSGTMLIASELPRNFWAEAVNTACHIINRAMMRPIINKTPYELYFGKKPNI 913

Query: 59   ---RVFGSECFIHNN 24
               R FG +C++HNN
Sbjct: 914  TYFRTFGCKCYVHNN 928


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  132 bits (331), Expect = 3e-28
 Identities = 103/378 (27%), Positives = 155/378 (41%), Gaps = 33/378 (8%)
 Frame = -2

Query: 1037 NYWILDSGCTTHMTRNRKLIKNITA-YDGGV*FGNNETCKEI*KGKLNIHGKLSSTG--E 867
            N W++DSGCT HMT N KL   I   +   +  GN        KG + +  +    G  +
Sbjct: 28   NTWLIDSGCTNHMTPNEKLFTKINRDFKVPIRVGNGAVMMSEGKGDIEVMTRKDKRGIRD 87

Query: 866  VLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSI----TAGKRMENLYILNED 699
            VLLV  +  NLL +  +  NG +V  + N C I D+    I       K     ++ NE+
Sbjct: 88   VLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSARKKIGEVEMVNKSFHLRWLSNEE 147

Query: 698  TCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGH----L 531
            T ++   E T + HK L    +SN+  L     V  LP        C++     H     
Sbjct: 148  TAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVEEGKCESCILSKHSRDPF 207

Query: 530  LKKKNIQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYTLSXX 351
             K+   +A     L   +     +   + G+++       +        LK K       
Sbjct: 208  PKESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDATRMVWVYFLKAKSEVFQTF 267

Query: 350  XXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRKN 171
                   EN A  + K +R D G E+LS EF +F E +GI  Q +A   PQ N++  R+N
Sbjct: 268  KKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFLEGNGIERQLTAAYSPQQNEVSERRN 327

Query: 170  RTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----------------------GLLR 57
            R+++E AR M    ++P   W +AVH   Y  NR                        ++
Sbjct: 328  RSLVEMARAMIKAKDLPLKLWAEAVHVAAYAQNRTPTRTLKNKTPLEAWSDSKPSVSHMK 387

Query: 56   VFGSECFIHNNDLTLVKW 3
            VFGS C++H  D    KW
Sbjct: 388  VFGSICYVHIPDEKRRKW 405


>gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108712101|gb|ABF99896.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1969

 Score =  131 bits (329), Expect = 5e-28
 Identities = 97/374 (25%), Positives = 168/374 (44%), Gaps = 38/374 (10%)
 Frame = -2

Query: 1040 SNYWILDSGCTTHMTRNRKLIKNITAYDGG--V*FGNNETCKEI*KGKLNIHGKLSSTGE 867
            SN W++DSGC+ HMT   K   ++T   G   + FG+  + + + KG + ++ K     +
Sbjct: 751  SNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLK-D 809

Query: 866  VLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMENLYILNEDT--- 696
            V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    R+  ++  N D+   
Sbjct: 810  VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAP 869

Query: 695  ----CLLRNIENTSI*--HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGH 534
                CL+ + EN  +   H+ L  I + ++  +   + +R LP  K          + G 
Sbjct: 870  GPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGK 928

Query: 533  LLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKG 369
            +    +     +   G   L  ++ V   ++  + G  +   +    +       L+ K 
Sbjct: 929  MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 988

Query: 368  YTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NK 189
             T             E     + +R D G EF +  F+ FC+S G+ HQFS+  +PQ N 
Sbjct: 989  ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 1048

Query: 188  IMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR-------------------- 69
            ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR                    
Sbjct: 1049 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 1108

Query: 68   --GLLRVFGSECFI 33
                LRVFG +CF+
Sbjct: 1109 KVSHLRVFGCKCFV 1122


>emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]
          Length = 2256

 Score =  130 bits (328), Expect = 7e-28
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 42/389 (10%)
 Frame = -2

Query: 1073 LTEYMLNASTF----SNYWILDSGCTTHMTRNRKLIKNIT--AYDGGV*FGNNETCKEI* 912
            L E +  +S F    SN W++DSGC+ HMT   K   ++T  + D  + FG+  + + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 911  KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGK 732
            KG + ++ K     +V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 731  RMENLYILNEDT-------CLLRNIENTSI*--HKILRQIHYSNI*NLVKYNAVRSLPSN 579
            R+  ++  N D+       CL+ + EN  +   H+ L  I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 578  KFSTQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*T 414
            K          + G +    +     +   G   L  ++ V   ++  + G  +   +  
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 413  TSA**HGSRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHG 234
              +       L+ K  T             E     + +R D G EF +  F+ FC+S G
Sbjct: 953  DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSG 1012

Query: 233  IHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----- 69
            + HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR     
Sbjct: 1013 VEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRT 1072

Query: 68   -----------------GLLRVFGSECFI 33
                               LRVFG +CF+
Sbjct: 1073 ILHKTPYELRFGRRPKVSHLRVFGCKCFV 1101


>gb|ABF94836.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1948

 Score =  130 bits (328), Expect = 7e-28
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 42/389 (10%)
 Frame = -2

Query: 1073 LTEYMLNASTF----SNYWILDSGCTTHMTRNRKLIKNIT--AYDGGV*FGNNETCKEI* 912
            L E +  +S F    SN W++DSGC+ HMT   K   ++T  + D  + FG+  + + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 911  KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGK 732
            KG + ++ K     +V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 731  RMENLYILNEDT-------CLLRNIENTSI*--HKILRQIHYSNI*NLVKYNAVRSLPSN 579
            R+  ++  N D+       CL+ + EN  +   H+ L  I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 578  KFSTQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*T 414
            K          + G +    +     +   G   L  ++ V   ++  + G  +   +  
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 413  TSA**HGSRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHG 234
              +       L+ K  T             E     + +R D G EF +  F+ FC+S G
Sbjct: 953  DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSG 1012

Query: 233  IHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----- 69
            + HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR     
Sbjct: 1013 VEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRT 1072

Query: 68   -----------------GLLRVFGSECFI 33
                               LRVFG +CF+
Sbjct: 1073 ILHKTPYELRFGRRPKVSHLRVFGCKCFV 1101


>gb|ABF93543.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 2124

 Score =  130 bits (328), Expect = 7e-28
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 42/389 (10%)
 Frame = -2

Query: 1073 LTEYMLNASTF----SNYWILDSGCTTHMTRNRKLIKNIT--AYDGGV*FGNNETCKEI* 912
            L E +  +S F    SN W++DSGC+ HMT   K   ++T  + D  + FG+  + + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 911  KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGK 732
            KG + ++ K     +V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 731  RMENLYILNEDT-------CLLRNIENTSI*--HKILRQIHYSNI*NLVKYNAVRSLPSN 579
            R+  ++  N D+       CL+ + EN  +   H+ L  I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 578  KFSTQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*T 414
            K          + G +    +     +   G   L  ++ V   ++  + G  +   +  
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 413  TSA**HGSRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHG 234
              +       L+ K  T             E     + +R D G EF +  F+ FC+S G
Sbjct: 953  DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSG 1012

Query: 233  IHHQFSANRIPQ*NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----- 69
            + HQFS+  +PQ N ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR     
Sbjct: 1013 VEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRT 1072

Query: 68   -----------------GLLRVFGSECFI 33
                               LRVFG +CF+
Sbjct: 1073 ILHKTPYELRFGRRPKVSHLRVFGCKCFV 1101


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
            Group]
          Length = 2145

 Score =  130 bits (327), Expect = 9e-28
 Identities = 97/374 (25%), Positives = 169/374 (45%), Gaps = 38/374 (10%)
 Frame = -2

Query: 1040 SNYWILDSGCTTHMTRNRKLIKNIT--AYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGE 867
            SN W++DSGC+ HMT   K   ++T  + D  + FG+  + + + KG + ++ K     +
Sbjct: 751  SNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLK-D 809

Query: 866  VLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMENLYILNEDT--- 696
            V LV  + YNLL ++ LCD  LEVRF+++   + D  E+ +    R+  ++  N D+   
Sbjct: 810  VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAP 869

Query: 695  ----CLLRNIENTSI*--HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGH 534
                CL+ + EN  +   H+ L  I + ++  +   + +R LP  K          + G 
Sbjct: 870  GPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGK 928

Query: 533  LLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKG 369
            +    +     +   G   L  ++ V   ++  + G  +   +    +       L+ K 
Sbjct: 929  MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 988

Query: 368  YTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NK 189
             T             E     + +R D G EF +  F+ FC+S G+ HQFS+  +PQ N 
Sbjct: 989  ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 1048

Query: 188  IMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR-------------------- 69
            ++ RKNRT++E AR M ++   P+ FW +A+    ++ NR                    
Sbjct: 1049 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 1108

Query: 68   --GLLRVFGSECFI 33
                LRVFG +CF+
Sbjct: 1109 KVSHLRVFGCKCFV 1122


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  127 bits (318), Expect = 1e-26
 Identities = 104/370 (28%), Positives = 163/370 (44%), Gaps = 34/370 (9%)
 Frame = -2

Query: 1037 NYWILDSGCTTHMTRNRKLIKNIT-AYDGGV*FGNNETCKEI*KGKLNIHGKLSS--TGE 867
            N W++DSGCT+HMT++  +  +I  +    V  GN E  +   KG + I  K  +     
Sbjct: 314  NTWLIDSGCTSHMTKHLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAISTKRGTKIVTN 373

Query: 866  VLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSITAGKRMENLYILNEDTC-- 693
            VL +  +  NLL +  +  NG  V F+ N C+I D     I   K   N + L  D    
Sbjct: 374  VLYIPDLDQNLLSVAQMLRNGYAVSFKENFCFISDVHGTKIAKIKMNGNSFYLKLDLVEG 433

Query: 692  --LLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLKKK 519
                  I+ + + HK     +  ++  + +   V  +P    + Q+C++  + G   ++ 
Sbjct: 434  HVFSAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESC-ELGKQQRQP 492

Query: 518  NIQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRS-----LKRKGYTLSX 354
              Q M     + L  +       +  T  S  +         SR      LK K   LS 
Sbjct: 493  FPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSM 552

Query: 353  XXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIMGRK 174
                    E ++ +  K +R D GGE+ S EF  FC+  GI HQ +A   PQ N +  RK
Sbjct: 553  FKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYSPQQNGVSKRK 612

Query: 173  NRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----------------GL------L 60
            NRT++E AR M  + ++PK  W +AV+T++YL NR                G+      L
Sbjct: 613  NRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKPSVKHL 672

Query: 59   RVFGSECFIH 30
            +VFGS C++H
Sbjct: 673  KVFGSFCYLH 682


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  126 bits (316), Expect = 2e-26
 Identities = 109/386 (28%), Positives = 168/386 (43%), Gaps = 37/386 (9%)
 Frame = -2

Query: 1049 STFSNYWILDSGCTTHMTRNRKLIKNI--TAYDGGV*FGNNETCKEI*KGKLNIHGKLSS 876
            S+  + W+LDSGCT HMT  + +   +  T     + FG++   K I  GK+ I  +  S
Sbjct: 729  SSGGSSWVLDSGCTNHMTGEKDMFHTLQLTQEAQEIVFGDSGKSKVIGIGKIPISDQ-QS 787

Query: 875  TGEVLLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSIT-AGKRMENLYILN-- 705
               VLLV  +SYNLL ++ LC  G    F      I   E++S+   G+    LY+++  
Sbjct: 788  LSNVLLVDSLSYNLLSVSQLCGMGYNCLFSDVDVKILRREDSSVAFTGRLKGKLYLVDFT 847

Query: 704  -----EDTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQ----SCQT 552
                  +TCL+   +   + H+ L  +   N+  L K N +  L +  F       +CQ 
Sbjct: 848  TSKVTPETCLVAKSDKGWLWHRRLAHVGMRNLAKLQKDNHIIGLTNVVFEKDRVCGACQA 907

Query: 551  TNKQGHLLKKKNI-QAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKR 375
              + G   + KN+        L  ++         + G+K+   +    +       L  
Sbjct: 908  GKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSRFTWVFFLSD 967

Query: 374  KGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ* 195
            KG T           +NE   K K VR D G EF +   ++F    GI H+FS    PQ 
Sbjct: 968  KGETQEILKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEFSVPYTPQQ 1027

Query: 194  NKIMGRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL--------------- 60
            N ++ RKNRT++EAAR M ++ + P  FW +AV+T  +  NR  L               
Sbjct: 1028 NGVVERKNRTLIEAARTMLDEYKTPDNFWAEAVNTACHAINRLYLHKIYKKTAYELLTGN 1087

Query: 59   -------RVFGSECFIHNNDLTLVKW 3
                   RVFG +CFI N  +   K+
Sbjct: 1088 KPKVDYFRVFGCKCFILNKKVKSSKF 1113


>gb|ABF67946.1| putative Opie4 pol protein [Zea mays]
          Length = 1068

 Score =  125 bits (313), Expect = 4e-26
 Identities = 104/372 (27%), Positives = 164/372 (44%), Gaps = 39/372 (10%)
 Frame = -2

Query: 1031 WILDSGCTTHMTRNRKL----IKNITAYDGGV*FGNNETCKEI*KGKLNIHGKLSSTGEV 864
            WI+DSGCT HMT  +K+    +KN  + D  + FG+    K    GK+ I  +  S   V
Sbjct: 11   WIIDSGCTNHMTGEKKMFTSYVKNKDSQDSII-FGDGNQGKVKGLGKIAISNE-HSISNV 68

Query: 863  LLVQHMSYNLLRINNLCDNGLEVRFQRNLCYIFDNEENSIT-AGKRMENLYILNE----- 702
             LV+ + YNLL ++ LC+ G    F      +F   + S+   G   + LY+++      
Sbjct: 69   FLVESLGYNLLSVSQLCNMGYNCLFTNVDVSVFRRSDGSLAFKGVLDDKLYLVDFAKEEA 128

Query: 701  --DTCLLRNIENTSI*HKILRQIHYSNI*NLVKYNAVRSLPSNKFSTQ----SCQTTNKQ 540
              D CL+       + H+ L  +   N+  L+K   V  L + +F       +CQ   + 
Sbjct: 129  GLDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQAGKQV 188

Query: 539  GHLLKKKNIQAMGS*T-LYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGSRSLKRKGYT 363
            G     KN+        L  ++         + G+K+   +    +       L+ K  T
Sbjct: 189  GGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSET 248

Query: 362  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCESHGIHHQFSANRIPQ*NKIM 183
                       +NE   K K +R D G EF +L+ ++F E  GI H+FSA   PQ N ++
Sbjct: 249  QGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVV 308

Query: 182  GRKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 60
             RKNRT+++ AR M  + + P+ FW +AV+T  +  NR  L                   
Sbjct: 309  ERKNRTLIDMARTMLGEFKTPERFWSEAVNTACHAINRVYLHRLLKKTSYELLTGNKPNV 368

Query: 59   ---RVFGSECFI 33
               RVFGS+C+I
Sbjct: 369  SYFRVFGSKCYI 380