BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00024538
         (435 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003240529.1| PREDICTED: copia protein-like [Acyrthosiphon...   105   6e-21
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   104   1e-20
ref|XP_003241734.1| PREDICTED: copia protein-like [Acyrthosiphon...   104   1e-20
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   103   2e-20
ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [S...   103   2e-20
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc...   103   2e-20
gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subc...   102   4e-20
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi...   102   5e-20
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   102   5e-20
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   102   7e-20
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  102   7e-20
gb|ABF97142.1| retrotransposon protein, putative, Ty1-copia subc...   102   7e-20
gb|AAK53860.1|AC016781_14 Putative retroelement [Oryza sativa Ja...   102   7e-20
gb|AAB82754.1| retrofit [Oryza longistaminata]                        101   9e-20
emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]   101   9e-20
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           101   1e-19
emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]        101   1e-19
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...   100   2e-19
gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subc...   100   2e-19
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   100   2e-19

>ref|XP_003240529.1| PREDICTED: copia protein-like [Acyrthosiphon pisum]
          Length = 1279

 Score =  105 bits (262), Expect = 6e-21
 Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
 Frame = -1

Query: 420  RKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEEYRAI 241
            R+     L GF D ++A  T D K+TTGYL  +   L+SW T++Q TV  S TE EY A+
Sbjct: 1121 RQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAV 1180

Query: 240  GDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKNQK------------HFVKEQ 97
             + T E +W  +LL+D  + I  PV +  DN GAI L  +Q+            HFV+E+
Sbjct: 1181 SNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREK 1240

Query: 96   YKRRLIDIRKISTEDQPADGFTKALGGHKF 7
             K  LI+++ I T +Q AD  TK LG  +F
Sbjct: 1241 VKEGLIELKYIPTSNQLADLLTKGLGNERF 1270


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  104 bits (260), Expect = 1e-20
 Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
 Frame = -1

Query: 399  LEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEEYRAIGDLTSEI 220
            + GF D ++A    D ++T G+ V LG NL+SW  +KQ TV +S TE EY+A+ + T+EI
Sbjct: 661  VSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEI 720

Query: 219  MWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHFVKEQYKRRLID 76
            MW   LL++ G+E      +  DN GA             K ++   HFV+E+  R+L++
Sbjct: 721  MWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLE 780

Query: 75   IRKISTEDQPADGFTKAL 22
            I  IST+DQ ADGFTKA+
Sbjct: 781  IAYISTKDQVADGFTKAI 798


>ref|XP_003241734.1| PREDICTED: copia protein-like [Acyrthosiphon pisum]
          Length = 983

 Score =  104 bits (259), Expect = 1e-20
 Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
 Frame = -1

Query: 420  RKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEEYRAI 241
            R+     L GF D ++A  T D K+TTGYL  +   L+SW T++Q TV  S TE EY A+
Sbjct: 825  RQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAV 884

Query: 240  GDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKNQK------------HFVKEQ 97
             + T E +W  +LL+D  + I  PV +  DN GAI L  +Q+            HFV+E+
Sbjct: 885  SNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREK 944

Query: 96   YKRRLIDIRKISTEDQPADGFTKALGGHKF 7
             K  LI+++ I T +Q AD  +K LG  +F
Sbjct: 945  VKEELIELKYIPTSNQLADLLSKGLGNEQF 974


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  103 bits (258), Expect = 2e-20
 Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G +I K     +  F D ++A    D ++T G+ V +G NL+SW  +KQ TV +S TE E
Sbjct: 865  GLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAE 924

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
            Y+A+ + T+EIMW   LL + G+++ +   +  DN GA             K ++   HF
Sbjct: 925  YKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHF 984

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+E+  R+L+ +  IST+DQ ADGFTK L
Sbjct: 985  VRERVARKLLQVEYISTKDQVADGFTKTL 1013


>ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [Sorghum bicolor]
            gi|241942867|gb|EES16012.1| hypothetical protein
            SORBIDRAFT_08g015513 [Sorghum bicolor]
          Length = 757

 Score =  103 bits (257), Expect = 2e-20
 Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 12/156 (7%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G RIRK     +  F   ++A    D ++T G+ V LG NL+SW  QKQ TV +S TE E
Sbjct: 600  GLRIRKSKCRIVSAFSYADWAGDVDDRRSTGGFAVFLGENLISWTAQKQATVSRSSTEAE 659

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
            Y+A+ + T+E+MW  +LL +  +       +  DN GA             K ++   HF
Sbjct: 660  YKALANATAEVMWVQKLLAELCVPHARVARLWCDNLGAKYLSANPVFHARTKHIEIDFHF 719

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKALGGHKFVK 1
            V+E+  ++L+DIR IS+EDQ ADGFTK+L   KF K
Sbjct: 720  VRERVAQKLLDIRFISSEDQLADGFTKSLPVTKFHK 755


>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  103 bits (257), Expect = 2e-20
 Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G +I + +   +  F D ++A    D ++T G+ V LG NL+SW  +KQ TV +S TE E
Sbjct: 1909 GLKISRSSSTLVSAFLDADWAGSIDDRRSTGGFAVFLGSNLVSWSARKQATVSRSSTEAE 1968

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
            Y+A+ + T+E+MW   LL++ G+   E   +  DN GA  L  N              HF
Sbjct: 1969 YKAVANATAEVMWVQALLKELGINSPETACMWCDNLGATYLAVNPVFHARTKHIEIDYHF 2028

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKALG 19
            V+E+  R+ ++I+ IS+ DQ ADGFTK LG
Sbjct: 2029 VRERVARKQLEIKFISSGDQVADGFTKPLG 2058


>gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1762

 Score =  102 bits (255), Expect = 4e-20
 Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
 Frame = -1

Query: 399  LEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEEYRAIGDLTSEI 220
            +  F+D ++A    D ++T G+++  G NL+SW  +KQRTV +S TE EY+A+ + T+E+
Sbjct: 1608 VSAFFDADWAGSLDDRRSTGGFVIYFGPNLVSWSARKQRTVSRSSTEAEYKAMANATAEL 1667

Query: 219  MWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHFVKEQYKRRLID 76
            +W   +L + G++I +   +  DN GA  L  N              HFV+E+   +++D
Sbjct: 1668 IWVRSVLEELGVKIDQSPVLWCDNLGATYLSSNPVFHARTKHIEIDYHFVQERVANKMLD 1727

Query: 75   IRKISTEDQPADGFTKAL 22
            IR I T+DQ ADGFTKAL
Sbjct: 1728 IRFIGTKDQIADGFTKAL 1745


>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
          Length = 391

 Score =  102 bits (254), Expect = 5e-20
 Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 12/138 (8%)
 Frame = -1

Query: 399 LEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEEYRAIGDLTSEI 220
           + GF D ++A    D ++T G+ V LG NL+SW  +KQ TV +S  E EY+A+ + T+EI
Sbjct: 231 VSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEI 290

Query: 219 MWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHFVKEQYKRRLID 76
           MW   LL++ G+E      +  DN GA             K ++   HFV+E+  R+L++
Sbjct: 291 MWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLE 350

Query: 75  IRKISTEDQPADGFTKAL 22
           I  IST+DQ ADGFTKA+
Sbjct: 351 IAYISTKDQVADGFTKAI 368


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  102 bits (254), Expect = 5e-20
 Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 12/138 (8%)
 Frame = -1

Query: 399  LEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEEYRAIGDLTSEI 220
            + GF D ++A    D ++T G+ V LG NL+SW  +KQ TV +S  E EY+A+ + T+EI
Sbjct: 1239 VSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEI 1298

Query: 219  MWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHFVKEQYKRRLID 76
            MW   LL++ G+E      +  DN GA             K ++   HFV+E+  R+L++
Sbjct: 1299 MWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLE 1358

Query: 75   IRKISTEDQPADGFTKAL 22
            I  IST+DQ ADGFTKA+
Sbjct: 1359 IAYISTKDQVADGFTKAI 1376


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  102 bits (253), Expect = 7e-20
 Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G  IR      L  F D ++A    D K+T GY + LG NL+SW ++KQ TV +S TE E
Sbjct: 1268 GLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAE 1327

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
            Y+A+ + T+E++W   LL + G+ +T    +  DN GA             K ++   HF
Sbjct: 1328 YKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHF 1387

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+++   + +DIR IST DQ ADGFTKAL
Sbjct: 1388 VRDRVLSKKLDIRLISTNDQVADGFTKAL 1416


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  102 bits (253), Expect = 7e-20
 Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G  I K     + G+ D ++A    D K+T G+ V LG NL+SW  +KQ TV +S TE E
Sbjct: 1271 GLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAE 1330

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
            Y+A+ + T+E++W   LLR+ G++  +   I  DN GA             K ++   HF
Sbjct: 1331 YKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHF 1390

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+E+  ++L++I  + + DQ ADGFTKAL
Sbjct: 1391 VRERVSQKLLEIDFVPSGDQVADGFTKAL 1419


>gb|ABF97142.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 658

 Score =  102 bits (253), Expect = 7e-20
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432 GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
           G +I K     +  F D ++A    D ++T G+ V +G NL+SW  +KQ TV +S TE E
Sbjct: 153 GLKIGKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAE 212

Query: 252 YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
           Y+A+ + T+EIMW   LL + G+++ +   +  DN GA  ++ N              HF
Sbjct: 213 YKALENATAEIMWIQTLLHELGIQVPKTAKVWCDNIGATYMIANPVFYARTKHIEVDYHF 272

Query: 108 VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
           V+E+  ++L+ +  IST DQ  DGFTK L
Sbjct: 273 VRERVAQKLLQVEYISTNDQVVDGFTKTL 301


>gb|AAK53860.1|AC016781_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1096

 Score =  102 bits (253), Expect = 7e-20
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G +I K     +  F D ++A    D ++T G+ V +G NL+SW  +KQ TV +S TE E
Sbjct: 932  GLKIGKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAE 991

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
            Y+A+ + T+EIMW   LL + G+++ +   +  DN GA  ++ N              HF
Sbjct: 992  YKALENATAEIMWIQTLLHELGIQVPKTAKVWCDNIGATYMIANPVFYARTKHIEVDYHF 1051

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+E+  ++L+ +  IST DQ  DGFTK L
Sbjct: 1052 VRERVAQKLLQVEYISTNDQVVDGFTKTL 1080


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  101 bits (252), Expect = 9e-20
 Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G  I K     + G+ D ++A    D K+T G+ V LG NL+SW  +KQ TV +S TE E
Sbjct: 1280 GLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAE 1339

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
            Y+A+ + T+E++W   LL++ G+E  +   I  DN GA             K ++   HF
Sbjct: 1340 YKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHF 1399

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+E+  ++L++I  + + DQ ADGFTKAL
Sbjct: 1400 VRERVSQKLLEIDFVPSGDQVADGFTKAL 1428


>emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]
          Length = 1300

 Score =  101 bits (252), Expect = 9e-20
 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G   +K     L G+ D +YA       +TTGY+  LG   +SW +++Q TV  S TE E
Sbjct: 1126 GLLYKKXEDCKLVGYCDADYAGDHDTRXSTTGYVFMLGSGAISWCSKRQPTVSLSTTEAE 1185

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
            YRA    T E MW I+L+ D    +   VP+  DN  A++L +N              HF
Sbjct: 1186 YRAAAMATQESMWLIRLMNDLHQLVDYAVPLYCDNQSAVRLAENPVFHARTKHVEVHYHF 1245

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKALGGHKF 7
            ++E+  +  +++ +I +EDQ AD FTK L G KF
Sbjct: 1246 IREKVLKEEVELNQIKSEDQVADLFTKGLSGSKF 1279


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  101 bits (251), Expect = 1e-19
 Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G +I +     +  F D ++A  + D ++T G+ + LG NL+SW  +KQ TV +S TE E
Sbjct: 916  GLKIGRSDSTTISAFSDADWAGCSDDRRSTGGFAIFLGFNLISWSARKQATVSRSSTEAE 975

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
            Y+A+ + T+E++W   LL++ G+   +   +  DN GA  L  N              HF
Sbjct: 976  YKALANATAEVIWIQTLLKELGVSQPKAAVLWCDNIGATYLSANPVFHARTKHIEVDYHF 1035

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKA 25
            V+E+  +RL+DIR IS+ DQ ADGFTKA
Sbjct: 1036 VRERVVQRLLDIRFISSGDQLADGFTKA 1063


>emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]
          Length = 1131

 Score =  101 bits (251), Expect = 1e-19
 Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G +I +     +  F D ++A  + D ++T G+ + LG NL+SW  +KQ TV +S TE E
Sbjct: 750  GLKIGRSDSTTISAFSDADWAGCSDDRRSTGGFAIFLGFNLISWSARKQATVSRSSTEAE 809

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
            Y+A+ + T+E++W   LL++ G+   +   +  DN GA  L  N              HF
Sbjct: 810  YKALANATAEVIWIQTLLKELGVSQPKAAVLWCDNIGATYLSANPVFHARTKHIEVDYHF 869

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKA 25
            V+E+  +RL+DIR IS+ DQ ADGFTKA
Sbjct: 870  VRERVVQRLLDIRFISSGDQLADGFTKA 897


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
            gi|31430072|gb|AAP52036.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1058

 Score =  100 bits (250), Expect = 2e-19
 Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G ++ K +   +  + D ++AD   D ++T G+ V LG NL+SW  +KQ TV +S TE E
Sbjct: 886  GLKVEKSSSNIVSAYSDADWADCLDDKRSTGGFAVFLGSNLISWNARKQATVSRSSTEAE 945

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGAIKLVKN------------QKHF 109
            Y+A+ + T+EIMW  +LL + G+    P  +  DN GA  L  N              HF
Sbjct: 946  YKALANATAEIMWVRKLLEELGISHPGPSQLWCDNIGATYLSVNPVFHARTKHIEIDYHF 1005

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+EQ  ++ + ++ + ++DQ ADGFTKAL
Sbjct: 1006 VREQVAQKQLALQFVPSQDQVADGFTKAL 1034


>gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 552

 Score =  100 bits (249), Expect = 2e-19
 Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432 GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
           G RI K +   + GF D ++A    D ++T G+ V LG NL+SW  +KQ TV +S TE E
Sbjct: 386 GLRISKSSSLLVSGFCDADWAGCLDDRRSTGGFAVFLGSNLVSWSARKQTTVSRSSTEAE 445

Query: 252 YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
           Y+A+ D  +EIMW   LL + G+E  +   +  DN GA             K ++   + 
Sbjct: 446 YKALADTKAEIMWLQTLLYEIGIETPKAAKVWCDNVGAKYLSVNPMFHARTKHIEVDYYI 505

Query: 108 VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
           V+E+  R+L++I  IS++DQ A GFTK+L
Sbjct: 506 VRERVSRKLLEIEYISSKDQIAYGFTKSL 534


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  100 bits (249), Expect = 2e-19
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 12/149 (8%)
 Frame = -1

Query: 432  GSRIRKGTPYNLEGFYDGNYADKTSDGKATTGYLVTLGGNLLSWVTQKQRTVLKSVTEEE 253
            G +I K     +  F D ++A    D  +T G+ V +G NL+SW  +KQ TV +S TE E
Sbjct: 1265 GLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAE 1324

Query: 252  YRAIGDLTSEIMWFIQLLRDYGMEITEPVPISSDNDGA------------IKLVKNQKHF 109
            Y+A+ ++T+EIMW   LL + G++  +   +  DN GA             K ++   HF
Sbjct: 1325 YKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHF 1384

Query: 108  VKEQYKRRLIDIRKISTEDQPADGFTKAL 22
            V+E+  R+ + +  IST+DQ ADGFTK L
Sbjct: 1385 VRERVARKFLQVEYISTKDQVADGFTKTL 1413