BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00023959
         (450 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY25883.1| Tetratricopeptide repeat-like superfamily protein...   148   6e-34
gb|ABR17838.1| unknown [Picea sitchensis]                             148   6e-34
ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|XP_004307227.1| PREDICTED: pentatricopeptide repeat-containi...   145   5e-33
gb|EMT33720.1| hypothetical protein F775_11239 [Aegilops tauschii]    145   7e-33
gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thal...   144   9e-33
ref|NP_172798.2| pentatricopeptide repeat-containing protein [Ar...   144   9e-33
ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
emb|CBI21289.3| unnamed protein product [Vitis vinifera]              144   1e-32
ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   144   2e-32
ref|XP_002870024.1| pentatricopeptide repeat-containing protein ...   143   2e-32
ref|XP_006282442.1| hypothetical protein CARUB_v10004110mg [Caps...   142   3e-32
ref|XP_004978055.1| PREDICTED: pentatricopeptide repeat-containi...   142   5e-32
ref|XP_006494379.1| PREDICTED: putative pentatricopeptide repeat...   141   8e-32
ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. l...   141   8e-32
gb|EXC10733.1| hypothetical protein L484_025317 [Morus notabilis]     141   1e-31
ref|XP_006414062.1| hypothetical protein EUTSA_v10024377mg [Eutr...   141   1e-31
gb|EOY33923.1| Tetratricopeptide repeat (TPR)-like superfamily p...   141   1e-31
ref|XP_004250510.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
ref|XP_002520500.1| pentatricopeptide repeat-containing protein,...   140   1e-31

>gb|EOY25883.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
          Length = 539

 Score =  148 bits (374), Expect = 6e-34
 Identities = 69/146 (47%), Positives = 105/146 (71%)
 Frame = +3

Query: 6   FDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHM 185
           F+EMP   R+V SWN LI GYA+N+  VE L+ F+ M+ +G V+PN   + TV+SACA +
Sbjct: 203 FEEMPE--RNVFSWNGLIGGYARNECFVEVLDTFKRMLIDGNVLPNDATLVTVLSACAKL 260

Query: 186 RSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMI 365
            +LD G+ +H YA  +G +    V N+LID+YAKCG +  A ++F+++ +KD+ISWN++I
Sbjct: 261 GALDLGKWVHVYAENNGYKGNVYVGNALIDLYAKCGMIKNAVDMFKSMDKKDLISWNTII 320

Query: 366 AGYGLHGHGKEAVELFYRMRNEGLKP 443
            G  +HGHG +A++LFY+M+N G+ P
Sbjct: 321 GGLAMHGHGADALDLFYQMKNGGMNP 346



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD++P   R+   WNSLI GYAQN    + + +F  M S G  +PN F    V+  C  
Sbjct: 7   VFDKIPE--RNTALWNSLIKGYAQNGFYEKVIFLFSQMKSMGFSLPNGFTFPIVLKCCFK 64

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYA-------------------------- 284
             +L +G  +H    + G      V  +LI+MY+                          
Sbjct: 65  CNALREGAEVHCVVIKSGFRGNPFVGTTLIEMYSGWRMTAAAYIVFSEMVDRNVVAWTSM 124

Query: 285 -----KCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHGKEAVELFYRM 422
                   +L  AR LFE  P +D++ WN+M++GY   G   EA  LF +M
Sbjct: 125 INGFILSHDLVKARFLFELAPERDIVLWNTMVSGYIEIGDMVEARNLFDQM 175



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
 Frame = +3

Query: 21  MHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQ 200
           M  +D+ISWN++I G A +    +AL++F Y +  G + P+      V+ AC HM  ++ 
Sbjct: 308 MDKKDLISWNTIIGGLAMHGHGADALDLF-YQMKNGGMNPDGITFIGVLCACTHMGLVED 366

Query: 201 G-----EIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRK-DVISWNSM 362
           G      ++ DY+ Q  +E        ++D+ A+ G L  A +  + +P + D + W ++
Sbjct: 367 GISYFLSMVDDYSIQPQIEH----YGCMVDLLARAGLLPQALDFVKKMPMEADAVIWAAL 422

Query: 363 I 365
           +
Sbjct: 423 L 423


>gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  148 bits (374), Expect = 6e-34
 Identities = 72/148 (48%), Positives = 102/148 (68%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD MP   RDV+SWN++I GY+QN Q  EAL +F  M   G + PNS  + +V+  CAH
Sbjct: 177 VFDRMPK--RDVVSWNAIIAGYSQNGQPYEALALFSEMQVNG-IKPNSSTLVSVMPVCAH 233

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + +L+QG+ IH YA + G+ES+  V+N L++MYAKCGN+  A +LFE +P +DV SWN++
Sbjct: 234 LLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAI 293

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           I GY L+    EA+  F RM+  G+KP+
Sbjct: 294 IGGYSLNSQHHEALAFFNRMQVRGIKPN 321



 Score =  147 bits (370), Expect = 2e-33
 Identities = 71/147 (48%), Positives = 103/147 (70%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +F+ MP  +RDV SWN++I GY+ N Q  EAL  F  M   G + PNS  + +V+ ACAH
Sbjct: 278 LFERMP--IRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG-IKPNSITMVSVLPACAH 334

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + +L+QG+ IH YA + G ES   V N+L++MYAKCGN+  A +LFE +P+K+V++WN++
Sbjct: 335 LFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAI 394

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKP 443
           I+GY  HGH  EA+ LF  M+ +G+KP
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKP 421



 Score =  144 bits (362), Expect = 2e-32
 Identities = 67/146 (45%), Positives = 103/146 (70%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +F+ MP   ++V++WN++I GY+Q+    EAL +F  M ++G + P+SFAI +V+ ACAH
Sbjct: 379 LFERMPK--KNVVAWNAIISGYSQHGHPHEALALFIEMQAQG-IKPDSFAIVSVLPACAH 435

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
             +L+QG+ IH Y  + G ES   V   L+D+YAKCGN+  A++LFE +P +DV+SW +M
Sbjct: 436 FLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTM 495

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLK 440
           I  YG+HGHG++A+ LF +M+  G K
Sbjct: 496 ILAYGIHGHGEDALALFSKMQETGTK 521



 Score =  100 bits (248), Expect = 3e-19
 Identities = 49/138 (35%), Positives = 78/138 (56%)
 Frame = +3

Query: 33  DVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEII 212
           + + W   I GY +N    +AL ++  M   G + P+     +V+ AC     L  G  +
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 213 HDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHG 392
           H+     G ES+  V  +L  MY KCG+L  AR++F+ +P++DV+SWN++IAGY  +G  
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 393 KEAVELFYRMRNEGLKPS 446
            EA+ LF  M+  G+KP+
Sbjct: 203 YEALALFSEMQVNGIKPN 220


>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  146 bits (369), Expect = 2e-33
 Identities = 63/149 (42%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGL-VMPNSFAIATVVSACA 179
           VFD+MP+  ++V+SW+++I  Y++N + +EAL +FR M+ E   ++PNS  + +V+ ACA
Sbjct: 240 VFDQMPV--KNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACA 297

Query: 180 HMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
            + +L+QG+++H Y  + GL+S  PV+++L+ +YA+CGNL +   +FE + ++DV+SWNS
Sbjct: 298 ALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNS 357

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           +I+ YG+HG G++A+++F  M ++GL PS
Sbjct: 358 LISSYGIHGFGRKAIQIFKEMIDQGLSPS 386



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSAC-- 176
           VFD+     R +  WN+L           E L+++R M   G V  + F    V+ AC  
Sbjct: 135 VFDKT--RKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG-VPSDRFTYTYVLKACVA 191

Query: 177 --AHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVIS 350
             A +  L  G  IH +  +HG E    ++ +L+DMYA+ G +  A  +F+ +P K+V+S
Sbjct: 192 SEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVS 251

Query: 351 WNSMIAGYGLHGHGKEAVELFYRM--RNEGLKPS 446
           W++MIA Y  +G   EA+ELF +M   N+ L P+
Sbjct: 252 WSAMIACYSKNGKPLEALELFRKMMLENQDLLPN 285



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 25/100 (25%), Positives = 52/100 (52%)
 Frame = +3

Query: 138 PNSFAIATVVSACAHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIAREL 317
           P       ++ +C    SL QG  +H +    G + +  +   LI+MY++  ++  AR++
Sbjct: 76  PTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKV 135

Query: 318 FENIPRKDVISWNSMIAGYGLHGHGKEAVELFYRMRNEGL 437
           F+   ++ +  WN++     L G+G+E ++L+ RM   G+
Sbjct: 136 FDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGV 175


>ref|XP_004307227.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 776

 Score =  145 bits (366), Expect = 5e-33
 Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVM-PNSFAIATVVSACA 179
           VFD+M    R+V+SW+++I  YA+N +  EA  +FR M+ E   M PNS  + +V+ ACA
Sbjct: 358 VFDQMQN--RNVVSWSAMIACYAKNARPYEAWELFRKMILEAPDMFPNSVTMVSVLQACA 415

Query: 180 HMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
            + +L+QG+ IH Y  + GL+S  PV++SLI MYA+CG L +A+++F  I RKDV+SWNS
Sbjct: 416 ALAALEQGKFIHGYILRRGLDSTLPVMSSLITMYARCGKLELAQQVFNKIKRKDVVSWNS 475

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           +I+ YG+HG+GK A+++F  M + G+ PS
Sbjct: 476 LISSYGIHGYGKRAIQVFEDMIDHGVSPS 504



 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD+   H R +  WN+L           E LN++R M + G V  + F    V+ AC  
Sbjct: 253 VFDKT--HKRTIYMWNALFRALTLAGHGTEVLNLYRQMNAIG-VPSDRFTYTYVLKACVV 309

Query: 183 MRS----LDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVIS 350
                  L +G+ IH +  +HG  +   V  +L+DMYA+ G +  A  +F+ +  ++V+S
Sbjct: 310 SECSSSLLQKGKEIHGHILRHGYGAHVHVTTTLLDMYARFGCVSYASSVFDQMQNRNVVS 369

Query: 351 WNSMIAGYGLHGHGKEAVELFYRM 422
           W++MIA Y  +    EA ELF +M
Sbjct: 370 WSAMIACYAKNARPYEAWELFRKM 393


>gb|EMT33720.1| hypothetical protein F775_11239 [Aegilops tauschii]
          Length = 711

 Score =  145 bits (365), Expect = 7e-33
 Identities = 65/139 (46%), Positives = 100/139 (71%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEI 209
           RDV++WN+L+  Y+      +AL+++  M++EG V PNS  + TV+SACA++ +L+ GE+
Sbjct: 387 RDVVTWNALLSSYSHLGHSNDALSLYDQMLTEG-VQPNSATLITVISACANLAALEHGEL 445

Query: 210 IHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGH 389
           IH Y +  GLES+  +  SL+DMY KCG LGIAR +F+++  +DV++WN MIAGYG+HG 
Sbjct: 446 IHSYVKDMGLESDVSISTSLVDMYTKCGQLGIARGIFDSMLVRDVVTWNVMIAGYGMHGD 505

Query: 390 GKEAVELFYRMRNEGLKPS 446
            K+A++LF  M    +KP+
Sbjct: 506 VKQALQLFSEMERGTIKPN 524



 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMV---SEGLVMPNSFAIATVVSA 173
           +FDEM    RDVI+W +++ G  +ND+  + +     MV    +G   PNS  + + + A
Sbjct: 70  LFDEMAE--RDVITWTAVVSGCVRNDECEKGMRYLVQMVRLAGDGGARPNSRTMESGLEA 127

Query: 174 CAHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISW 353
           C  +  L  G  +H Y  + G+     V+++L  MY+KC     A  LF  +P KDV++W
Sbjct: 128 CGVLGELSAGRCLHGYTVKEGIGDCALVVSALFSMYSKCDRTEDACVLFPELPEKDVVTW 187

Query: 354 NSMIAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
            S+I  Y   G  +EAVELF  M   GL+P +
Sbjct: 188 TSLIGTYCRRGLDREAVELFQEMEVSGLQPDE 219



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
 Frame = +3

Query: 21  MHLRDVISWNSLICGYAQNDQDVEALNVFRYMV----SEGLVMPNSFAIATVVSACAHMR 188
           +H RD  SW+ ++  Y +   DV+ L + R M      E L   NS  + + +S+C+ + 
Sbjct: 280 LHQRDAESWSLMVVLYCKAGLDVKCLELCREMHCRDHDEFLCDINS--LVSTISSCSRLG 337

Query: 189 SLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWNSMI 365
            L  G+  H ++ +  L+ E  V N+LI MY +CG   +A ++F     R+DV++WN+++
Sbjct: 338 KLRLGQSAHCFSIKCLLD-EISVANALIGMYGRCGKFDLAYKIFGVAKVRRDVVTWNALL 396

Query: 366 AGYGLHGHGKEAVELFYRMRNEGLKPS 446
           + Y   GH  +A+ L+ +M  EG++P+
Sbjct: 397 SSYSHLGHSNDALSLYDQMLTEGVQPN 423



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FD M +  RDV++WN +I GY  +    +AL +F  M   G + PNS     ++SAC H
Sbjct: 481 IFDSMLV--RDVVTWNVMIAGYGMHGDVKQALQLFSEM-ERGTIKPNSVTFLAILSACCH 537

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWNS 359
              +D+G  +     ++ LE        ++D+  K G+L  A ++   +P + D   W +
Sbjct: 538 AGYVDEGRKLFIRMGEYCLEPNLKHYACMVDLLGKSGHLQEAEDMILAMPIQPDGGVWGT 597

Query: 360 MIAGYGLH 383
           +++   +H
Sbjct: 598 LLSACKMH 605



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 40/140 (28%), Positives = 70/140 (50%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +F E+P   +DV++W SLI  Y +   D EA+ +F+ M   GL  P+   ++ V+S   +
Sbjct: 175 LFPELPE--KDVVTWTSLIGTYCRRGLDREAVELFQEMEVSGL-QPDEVLVSCVLSGLGN 231

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
             ++ +G+  H    +        V N+LI MY K   +  A ++F  + ++D  SW+ M
Sbjct: 232 SGNVRRGKAFHAAIIKRNFGDNLLVANALISMYGKLELVDAAGKVFGILHQRDAESWSLM 291

Query: 363 IAGYGLHGHGKEAVELFYRM 422
           +  Y   G   + +EL   M
Sbjct: 292 VVLYCKAGLDVKCLELCREM 311



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = +3

Query: 138 PNSFAIATVVSACAHMRSLDQGEIIHDYARQHGL---ESETPVINSLIDMYAKCGNLGIA 308
           P+ F      SA A + +L  G  +H Y+ + GL   +    V +SL+ MYA+CG +  A
Sbjct: 8   PSRFTAPIAASAAAELAALPVGSSVHAYSVKLGLLVGDGSLAVSSSLVYMYARCGCIDDA 67

Query: 309 RELFENIPRKDVISWNSMIAG 371
            +LF+ +  +DVI+W ++++G
Sbjct: 68  MKLFDEMAERDVITWTAVVSG 88


>gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  144 bits (364), Expect = 9e-33
 Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD+MP   R+V SWN LI GYAQN +  E L  F+ MV EG V+PN   +  V+SACA 
Sbjct: 90  VFDDMPE--RNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAK 147

Query: 183 MRSLDQGEIIHDYARQHGLES-ETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
           + + D G+ +H Y    G    +  V N+LIDMY KCG + IA E+F+ I R+D+ISWN+
Sbjct: 148 LGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNT 207

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           MI G   HGHG EA+ LF+ M+N G+ P +
Sbjct: 208 MINGLAAHGHGTEALNLFHEMKNSGISPDK 237



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 37/135 (27%), Positives = 66/135 (48%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEI 209
           ++V+ W S+I GY  N   V A   F       +V+ N     T++S    M ++ +   
Sbjct: 4   KNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWN-----TMISGYIEMGNMLEARS 58

Query: 210 IHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGH 389
           + D      + S     N++++ YA  G++     +F+++P ++V SWN +I GY  +G 
Sbjct: 59  LFDQMPCRDVMSW----NTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGR 114

Query: 390 GKEAVELFYRMRNEG 434
             E +  F RM +EG
Sbjct: 115 VSEVLGSFKRMVDEG 129



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQG-E 206
           RD+ISWN++I G A +    EALN+F  M + G + P+      V+ AC HM  ++ G  
Sbjct: 200 RDLISWNTMINGLAAHGHGTEALNLFHEMKNSG-ISPDKVTFVGVLCACKHMGLVEDGLA 258

Query: 207 IIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRK-DVISWNSMI 365
             +       +  E      ++D+ ++ G L  A E    +P K D + W +++
Sbjct: 259 YFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 312


>ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|110741720|dbj|BAE98806.1| hypothetical protein
           [Arabidopsis thaliana] gi|332190892|gb|AEE29013.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 474

 Score =  144 bits (364), Expect = 9e-33
 Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD+MP   R+V SWN LI GYAQN +  E L  F+ MV EG V+PN   +  V+SACA 
Sbjct: 143 VFDDMPE--RNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAK 200

Query: 183 MRSLDQGEIIHDYARQHGLES-ETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
           + + D G+ +H Y    G    +  V N+LIDMY KCG + IA E+F+ I R+D+ISWN+
Sbjct: 201 LGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNT 260

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           MI G   HGHG EA+ LF+ M+N G+ P +
Sbjct: 261 MINGLAAHGHGTEALNLFHEMKNSGISPDK 290



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 37/135 (27%), Positives = 66/135 (48%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEI 209
           ++V+ W S+I GY  N   V A   F       +V+ N     T++S    M ++ +   
Sbjct: 57  KNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWN-----TMISGYIEMGNMLEARS 111

Query: 210 IHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGH 389
           + D      + S     N++++ YA  G++     +F+++P ++V SWN +I GY  +G 
Sbjct: 112 LFDQMPCRDVMSW----NTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGR 167

Query: 390 GKEAVELFYRMRNEG 434
             E +  F RM +EG
Sbjct: 168 VSEVLGSFKRMVDEG 182



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQG-E 206
           RD+ISWN++I G A +    EALN+F  M + G + P+      V+ AC HM  ++ G  
Sbjct: 253 RDLISWNTMINGLAAHGHGTEALNLFHEMKNSG-ISPDKVTFVGVLCACKHMGLVEDGLA 311

Query: 207 IIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRK-DVISWNSMI 365
             +       +  E      ++D+ ++ G L  A E    +P K D + W +++
Sbjct: 312 YFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 365


>ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  144 bits (363), Expect = 1e-32
 Identities = 71/148 (47%), Positives = 98/148 (66%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD M    RDVISWNS+I  YAQN    E++ +F  MV +G +  N+  ++ V+ ACAH
Sbjct: 318 VFDGMAE--RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 375

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
             S   G+ IHD   + GLES   V  S+IDMY KCG + +AR+ F+ +  K+V SW++M
Sbjct: 376 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 435

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           +AGYG+HGH KEA+E+FY M   G+KP+
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKPN 463



 Score =  112 bits (280), Expect = 5e-23
 Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 7/151 (4%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFR-YMVSE------GLVMPNSFAIAT 161
           +FDE+    R+++SW S+I GY QND    AL +F+ ++V E      G V  +  A+ +
Sbjct: 209 LFDEISH--RNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVS 266

Query: 162 VVSACAHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKD 341
           V+SAC+ +      E +H +  + G E +  V N+L+D YAKCG LG++R +F+ +  +D
Sbjct: 267 VLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD 326

Query: 342 VISWNSMIAGYGLHGHGKEAVELFYRMRNEG 434
           VISWNS+IA Y  +G   E++E+F+RM  +G
Sbjct: 327 VISWNSIIAVYAQNGMSTESMEIFHRMVKDG 357



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 47/127 (37%), Positives = 67/127 (52%)
 Frame = +3

Query: 33  DVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEII 212
           +V SWNS+I   A++   VEAL  F  M    L  PN       + +C+ +  L  G   
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSL-KPNRSTFPCAIKSCSALLDLHSGRQA 174

Query: 213 HDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHG 392
           H  A   G E +  V ++L+DMY+KCG L  AR LF+ I  ++++SW SMI GY  +   
Sbjct: 175 HQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDA 234

Query: 393 KEAVELF 413
             A+ LF
Sbjct: 235 HRALLLF 241



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
 Frame = +3

Query: 21  MHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQ 200
           M  ++V SW++++ GY  +    EAL VF  M   G V PN     +V++AC+H   L++
Sbjct: 424 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHAGLLEE 482

Query: 201 G-----EIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWNSM 362
           G      + H++  + G+E        ++D+  + G L  A +L + +  R D + W ++
Sbjct: 483 GWHWFKAMSHEFDVEPGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 538

Query: 363 IAGYGLH 383
           +    +H
Sbjct: 539 LGACRMH 545


>emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  144 bits (363), Expect = 1e-32
 Identities = 71/148 (47%), Positives = 98/148 (66%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD M    RDVISWNS+I  YAQN    E++ +F  MV +G +  N+  ++ V+ ACAH
Sbjct: 164 VFDGMAE--RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 221

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
             S   G+ IHD   + GLES   V  S+IDMY KCG + +AR+ F+ +  K+V SW++M
Sbjct: 222 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 281

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           +AGYG+HGH KEA+E+FY M   G+KP+
Sbjct: 282 VAGYGMHGHAKEALEVFYEMNMAGVKPN 309



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 46/127 (36%), Positives = 67/127 (52%)
 Frame = +3

Query: 33  DVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEII 212
           +V SWNS+I   A++   VEAL  F  M    L  PN       + +C+ +  L  G   
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSL-KPNRSTFPCAIKSCSALLDLHSGRQA 98

Query: 213 HDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHG 392
           H  A   G E +  V ++L+DMY+KCG L  AR LF+ I  ++++SW SMI GY  +   
Sbjct: 99  HQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDA 158

Query: 393 KEAVELF 413
             A+ +F
Sbjct: 159 HRALRVF 165



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
 Frame = +3

Query: 21  MHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQ 200
           M  ++V SW++++ GY  +    EAL VF  M   G V PN     +V++AC+H   L++
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHAGLLEE 328

Query: 201 G-----EIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWNSM 362
           G      + H++  + G+E        ++D+  + G L  A +L + +  R D + W ++
Sbjct: 329 GWHWFKAMSHEFDVEPGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 384

Query: 363 IAGYGLH 383
           +    +H
Sbjct: 385 LGACRMH 391


>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  144 bits (362), Expect = 2e-32
 Identities = 68/149 (45%), Positives = 101/149 (67%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM   ++D++SWN++I GY++N    EALN+F  M       PNS  +A ++ ACA 
Sbjct: 409 VFSEM--QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS--KPNSITMACILPACAS 464

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + +L++G+ IH +  ++G   +  V N+L+DMY KCG LG+AR LF+ IP KD++SW  M
Sbjct: 465 LAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 524

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           IAGYG+HG+G EA+  F  MRN G++P +
Sbjct: 525 IAGYGMHGYGSEAIAAFNEMRNSGIEPDE 553



 Score =  111 bits (277), Expect = 1e-22
 Identities = 52/132 (39%), Positives = 84/132 (63%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEI 209
           R V+SW S+I GYA+      ++ +F  M  EG + P+ F I T++ ACA    L+ G+ 
Sbjct: 315 RSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEG-ISPDIFTITTILHACACTGLLENGKD 373

Query: 210 IHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGH 389
           +H+Y +++ ++S+  V N+L+DMYAKCG++G A  +F  +  KD++SWN+MI GY  +  
Sbjct: 374 VHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSL 433

Query: 390 GKEAVELFYRMR 425
             EA+ LF  M+
Sbjct: 434 PNEALNLFVEMQ 445



 Score =  105 bits (261), Expect = 8e-21
 Identities = 57/147 (38%), Positives = 84/147 (57%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FDE+    RDVISWNS+I GY  N    + L++F  M+  G +  +   + +VV+ C++
Sbjct: 207 LFDELGD--RDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSVVAGCSN 263

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
              L  G  +H YA +     E  + N L+DMY+K GNL  A ++FE +  + V+SW SM
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKP 443
           IAGY   G    +V LF+ M  EG+ P
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGISP 350



 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 29/94 (30%), Positives = 54/94 (57%)
 Frame = +3

Query: 159 TVVSACAHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRK 338
           +V+  CA ++S+  G  IH   + + +E +  + + L+ MY  CG+L   R +F+ +  +
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 339 DVISWNSMIAGYGLHGHGKEAVELFYRMRNEGLK 440
            V  WN ++ GY   G+ +E++ LF RMR  G++
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR 199



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FD +P   +D++SW  +I GY  +    EA+  F  M + G + P+  +  +++ AC+H
Sbjct: 509 LFDMIPE--KDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSG-IEPDEVSFISILYACSH 565

Query: 183 MRSLDQGEIIHDYARQH-GLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWN 356
              LD+G    +  R +  +E ++     ++D+ A+ GNL  A +  + +P   D   W 
Sbjct: 566 SGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWG 625

Query: 357 SMIAG 371
           +++ G
Sbjct: 626 ALLCG 630


>ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315860|gb|EFH46283.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 871

 Score =  143 bits (361), Expect = 2e-32
 Identities = 70/149 (46%), Positives = 102/149 (68%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM   ++D+ISWN++I GY++N    EAL++F  ++ E    P+   +A V+ ACA 
Sbjct: 454 VFSEM--RVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACAS 511

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + + D+G  IH Y  ++G  S+  V NSL+DMYAKCG L +AR LF++I  KD++SW  M
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           IAGYG+HG GKEA+ LF +MR  G++P +
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDE 600



 Score =  105 bits (262), Expect = 6e-21
 Identities = 59/147 (40%), Positives = 84/147 (57%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFDEM    RDVISWNS+I GY  N    + L+VF  M+  G+ +  +  I +V + CA 
Sbjct: 252 VFDEMTE--RDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLA-TIVSVFAGCAD 308

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
            R +  G  +H +  +     E    N+L+DMY+KCG+L  A+ +F  +  + V+S+ SM
Sbjct: 309 SRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSM 368

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKP 443
           IAGY   G   EAV+LF  M  EG+ P
Sbjct: 369 IAGYAREGLAGEAVKLFEEMEEEGISP 395



 Score =  102 bits (253), Expect = 7e-20
 Identities = 52/137 (37%), Positives = 86/137 (62%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM    R V+S+ S+I GYA+     EA+ +F  M  EG + P+ + +  V++ CA 
Sbjct: 353 VFREMSG--RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG-ISPDVYTVTAVLNCCAR 409

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
            R LD+G+ +H++ +++ +  +  V N+L+DMYAKCG++  A  +F  +  KD+ISWN++
Sbjct: 410 NRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTV 469

Query: 363 IAGYGLHGHGKEAVELF 413
           I GY  + +  EA+ LF
Sbjct: 470 IGGYSKNCYANEALSLF 486



 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 44/146 (30%), Positives = 83/146 (56%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD++   +   + WN L+   A++     ++ +F+ M+S G+ M +S+  + V  + + 
Sbjct: 151 VFDQVK--IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEM-DSYTFSCVSKSFSS 207

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           +RS++ GE +H Y  + G      V NSL+  Y K   +  AR++F+ +  +DVISWNS+
Sbjct: 208 LRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSI 267

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLK 440
           I GY  +G  ++ + +F +M   G++
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIE 293



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FD++    +D++SW  +I GY  +    EA+ +F  M   G + P+  +  +++ AC+H
Sbjct: 556 LFDDITS--KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG-IEPDEISFVSLLYACSH 612

Query: 183 MRSLDQGEIIHDYARQH-GLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWN 356
              +D+G    +  R    +E        ++DM A+ GNL  A    EN+P   D   W 
Sbjct: 613 SGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWG 672

Query: 357 SMIAGYGLH 383
           +++ G  +H
Sbjct: 673 ALLCGCRIH 681


>ref|XP_006282442.1| hypothetical protein CARUB_v10004110mg [Capsella rubella]
           gi|482551147|gb|EOA15340.1| hypothetical protein
           CARUB_v10004110mg [Capsella rubella]
          Length = 872

 Score =  142 bits (359), Expect = 3e-32
 Identities = 70/149 (46%), Positives = 101/149 (67%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM   +RD+ISWN++I GY++N    EAL++F  ++ E    P+   +A V+ ACA 
Sbjct: 455 VFSEM--RVRDIISWNTVIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 512

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + + D+G  IH Y  ++G  S+  V NSL+DMYAKCG L +AR LF++I  KD++SW  M
Sbjct: 513 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARMLFDDIASKDLVSWTVM 572

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           IAGYG+HG GKEA+ LF +MR  G++  +
Sbjct: 573 IAGYGMHGFGKEAIALFNQMREAGIEADE 601



 Score =  108 bits (269), Expect = 9e-22
 Identities = 60/147 (40%), Positives = 85/147 (57%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFDEM    RDVISWNS+I GY  N    + L+VF  M+  G+ +  +  I +V +ACA 
Sbjct: 253 VFDEMTE--RDVISWNSIINGYVSNGLAEQGLSVFVQMLVSGVEIDLA-TIVSVFAACAD 309

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
            R +  G  +H +  +     E    N+L+DMY+KCG+L  A+ +F  +  + V+S+ SM
Sbjct: 310 SRLISLGRAVHGFGMKACFSREDRFCNTLLDMYSKCGDLDSAKAVFTEMSDRSVVSYTSM 369

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKP 443
           IAGY   G   EAV+LF  M  EG+ P
Sbjct: 370 IAGYAREGLAGEAVKLFGEMEKEGISP 396



 Score =  100 bits (250), Expect = 2e-19
 Identities = 52/143 (36%), Positives = 88/143 (61%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM    R V+S+ S+I GYA+     EA+ +F  M  EG + P+ + +  V++ CA 
Sbjct: 354 VFTEMSD--RSVVSYTSMIAGYAREGLAGEAVKLFGEMEKEG-ISPDVYTVTAVLNCCAR 410

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
            R LD+G+ +H++ +++ +  +  V N+L+DMYAKCG++  A  +F  +  +D+ISWN++
Sbjct: 411 NRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVRDIISWNTV 470

Query: 363 IAGYGLHGHGKEAVELFYRMRNE 431
           I GY  + +  EA+ LF  +  E
Sbjct: 471 IGGYSKNCYANEALSLFNLLLEE 493



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 43/146 (29%), Positives = 83/146 (56%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD++   +   + WN L+   A++     ++ +F+ M+S G+ M +S+  + +  + + 
Sbjct: 152 VFDQVK--IEKALFWNILMNELAKSGDFSGSIGLFKKMMSLGVEM-DSYTFSCISKSFSS 208

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           +RS++ GE +H Y  + G      V NSL+  Y K   +  AR++F+ +  +DVISWNS+
Sbjct: 209 LRSVNGGEQLHGYILKSGFGDRNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSI 268

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLK 440
           I GY  +G  ++ + +F +M   G++
Sbjct: 269 INGYVSNGLAEQGLSVFVQMLVSGVE 294



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FD++    +D++SW  +I GY  +    EA+ +F  M   G +  +  +  +++ AC+H
Sbjct: 557 LFDDIAS--KDLVSWTVMIAGYGMHGFGKEAIALFNQMREAG-IEADEISFVSLLYACSH 613

Query: 183 MRSLDQGEIIHDYARQH-GLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWN 356
              +D+G  I +  R    +E        ++DM A+ GNL  A    EN+P   D   W 
Sbjct: 614 SGLVDEGWRIFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWG 673

Query: 357 SMIAGYGLH 383
           +++ G  +H
Sbjct: 674 ALLCGCRIH 682


>ref|XP_004978055.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Setaria italica]
          Length = 772

 Score =  142 bits (358), Expect = 5e-32
 Identities = 63/138 (45%), Positives = 100/138 (72%)
 Frame = +3

Query: 33  DVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEII 212
           DV++WN+LI  YA       A++++  M++EGL  PNS  + TV+SACA++ +L++GE +
Sbjct: 490 DVVTWNALISSYAHLGHSNAAVSLYDQMLTEGL-KPNSATLITVISACANLVALERGEQV 548

Query: 213 HDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHG 392
           H Y ++ G ES+  +  +L+DMYAKCG LGIAR +F+++ ++DV++WN MI+GYG+HG  
Sbjct: 549 HSYVKEMGWESDVSISTALVDMYAKCGQLGIARRIFDSMLQRDVVAWNVMISGYGMHGEA 608

Query: 393 KEAVELFYRMRNEGLKPS 446
           K+A+ELF  M    +KP+
Sbjct: 609 KQALELFGEMERGSVKPN 626



 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMV---SEGLVMPNSFAIATVVSA 173
           VF+EMP   RDV++W +++ G  +N +  E L     M+    +G   PNS  + + + A
Sbjct: 171 VFEEMPE--RDVVAWTAVVSGCVRNGECAEGLRYLVEMIRLAGDGGARPNSRTMESGLEA 228

Query: 174 CAHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISW 353
           C  +  L+ G  +H Y  + G+     V ++L  MY+KC +   A  LF  +P KDV+SW
Sbjct: 229 CGVLGELNSGRCLHGYVVKIGVGDSPLVASALFSMYSKCNSTEDAYILFSELPEKDVVSW 288

Query: 354 NSMIAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
            S+I  Y   G   EA+ELF  M   G++P +
Sbjct: 289 TSLIGAYCRRGLITEAIELFQEMEESGVQPDE 320



 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
 Frame = +3

Query: 21  MHLRDVISWNSLICGYAQNDQDVEALNVFRYMV----SEGLVMPNSFAIATVVSACAHMR 188
           +H +DV SWN +I GY +   DV+ L ++R +      E L   NS  + + +S+C+ + 
Sbjct: 381 LHQQDVESWNLMIVGYCKAGWDVQCLELYRELQFRDKDEFLCDANS--LVSAISSCSRLA 438

Query: 189 SLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRK-DVISWNSMI 365
            L  G   H Y+ +H L+    V N LI MY +CG    AR++F+    K DV++WN++I
Sbjct: 439 ELRLGRSAHCYSIKHLLDDNLSVANVLIGMYGRCGKFNNARKIFDLAKLKGDVVTWNALI 498

Query: 366 AGYGLHGHGKEAVELFYRMRNEGLKPS 446
           + Y   GH   AV L+ +M  EGLKP+
Sbjct: 499 SSYAHLGHSNAAVSLYDQMLTEGLKPN 525



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 41/141 (29%), Positives = 74/141 (52%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +F E+P   +DV+SW SLI  Y +     EA+ +F+ M   G V P+   ++ +++   +
Sbjct: 276 LFSELPE--KDVVSWTSLIGAYCRRGLITEAIELFQEMEESG-VQPDEVLVSCLLAGLGN 332

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + ++  G+  H    +   E      N+LI MY K   + +A  +F ++ ++DV SWN M
Sbjct: 333 IGNVRGGKAFHAVITKRNFEDSVLTGNALISMYGKFELVDVAGRVFRSLHQQDVESWNLM 392

Query: 363 IAGYGLHGHGKEAVELFYRMR 425
           I GY   G   + +EL+  ++
Sbjct: 393 IVGYCKAGWDVQCLELYRELQ 413



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
 Frame = +3

Query: 33  DVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEII 212
           D   WNSLI  +        AL   R M++ G   P+ F      SA A + +L  G  +
Sbjct: 74  DAFLWNSLIRAHHCASDFAAALAAHRRMLASG-ARPSRFTTPLAASAAAELGALGVGASV 132

Query: 213 HDYARQHGL----ESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGL 380
           H Y  + GL         V +SL+ +YA+CG +G A ++FE +P +DV++W ++++G   
Sbjct: 133 HAYCVRCGLLVGDGGSVAVASSLVYVYARCGVVGDAVKVFEEMPERDVVAWTAVVSGCVR 192

Query: 381 HGHGKEAVELFYRM 422
           +G   E +     M
Sbjct: 193 NGECAEGLRYLVEM 206



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FD M    RDV++WN +I GY  + +  +AL +F  M   G V PN      ++SAC H
Sbjct: 583 IFDSMLQ--RDVVAWNVMISGYGMHGEAKQALELFGEM-ERGSVKPNGVTFLAILSACCH 639

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWNS 359
              +++G  +     ++ LE        ++D+  K G+L  A ++   +P   D   W +
Sbjct: 640 SGFVEEGRKLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGVWGT 699

Query: 360 MIAGYGLH 383
           +++   +H
Sbjct: 700 LLSACKVH 707


>ref|XP_006494379.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Citrus sinensis]
          Length = 600

 Score =  141 bits (356), Expect = 8e-32
 Identities = 72/148 (48%), Positives = 102/148 (68%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FDEMP   RDVISW SLI GY++ +Q VEA+ +FR M+    V P+   +ATV+SACAH
Sbjct: 305 LFDEMPR--RDVISWTSLITGYSRGNQFVEAVKLFREMML-AKVKPDEITLATVLSACAH 361

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + SLD GE IHDY ++HG + +  + NSLIDMY KCG +  A  +F  + +KD +SW S+
Sbjct: 362 IGSLDMGEAIHDYIKRHGTKCDLYLGNSLIDMYCKCGVVENALVVFHEMEKKDSVSWTSI 421

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           I+G  ++G    A+ELF +M  EG++P+
Sbjct: 422 ISGLAVNGFADYALELFMQMLREGVRPT 449



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 45/135 (33%), Positives = 77/135 (57%)
 Frame = +3

Query: 36  VISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEIIH 215
           ++ +N +I G +Q+DQ  EA++++  M  +G    N      V  ACA ++ +  G+ +H
Sbjct: 81  LLVFNHMIQGLSQSDQPNEAIDMYNNMYHQGFTGDN-LTFIFVFKACARVKDVFHGQKVH 139

Query: 216 DYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHGK 395
            +  + G  S   V N+LI +YA CG LG+AR+LF+ +  +D++SWNS+  GY      +
Sbjct: 140 AHILKLGFGSYLFVSNALIHLYASCGRLGLARKLFDIMTNRDLVSWNSLNCGYSQCKRFE 199

Query: 396 EAVELFYRMRNEGLK 440
           E + LF  M+   +K
Sbjct: 200 EVLALFNSMQEVNVK 214



 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 45/131 (34%), Positives = 76/131 (58%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEI 209
           RD++SWNSL CGY+Q  +  E L +F  M  E  V  ++  +  V+ AC+ +   D  + 
Sbjct: 180 RDLVSWNSLNCGYSQCKRFEEVLALFNSM-QEVNVKADAVTMVKVILACSSLGRWDIADS 238

Query: 210 IHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGH 389
           +  Y  ++ +E +  + N+LID+Y + G + +A+E F  +  K+++SWN++I GY   G 
Sbjct: 239 MVKYIEENNIEFDVYLGNTLIDVYGRRGLVDLAQEAFNQMLDKNIVSWNALIIGYAKVGR 298

Query: 390 GKEAVELFYRM 422
             EA +LF  M
Sbjct: 299 LIEAQKLFDEM 309



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM    +D +SW S+I G A N     AL +F  M+ EG V P   +   ++ AC H
Sbjct: 406 VFHEMEK--KDSVSWTSIISGLAVNGFADYALELFMQMLREG-VRPTHGSFVGILLACTH 462

Query: 183 MRSLDQG-EIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWN 356
              +D+G +      + +GL  E      ++D+ ++ GN+  A E  + +P   DV+ W 
Sbjct: 463 AGLIDEGLQYFESMEKVYGLTPEMKHYGCVVDLLSRSGNVEKAYEFMKAMPIAPDVVVWR 522

Query: 357 SMIAGYGLHGH 389
            +++   LHG+
Sbjct: 523 ILLSASKLHGN 533


>ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 471

 Score =  141 bits (356), Expect = 8e-32
 Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFDEM    R+V SWN LI GYAQN +  E L  F+ MV EG V PN   +  V+SACA 
Sbjct: 140 VFDEMLE--RNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAK 197

Query: 183 MRSLDQGEIIHDYARQHGLES-ETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
           + + D G+ +H Y    G    +  V N+LIDMY KCG + IA E+F+ I R+D+ISWN+
Sbjct: 198 LGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNT 257

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           MI G   HGHG EA++LF+ M+N G+ P +
Sbjct: 258 MINGLAAHGHGTEALDLFHEMKNCGISPDK 287



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 36/135 (26%), Positives = 64/135 (47%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEI 209
           ++V+ W S+I GY  N   V A   F       +V+ N     T+V+    M ++ +   
Sbjct: 54  KNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWN-----TMVAGYIEMGNMMEARS 108

Query: 210 IHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGH 389
           + D      + S     N++++ YA  G++     +F+ +  ++V SWN +I GY  +G 
Sbjct: 109 LFDQMPCRDVMSW----NTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGR 164

Query: 390 GKEAVELFYRMRNEG 434
             E +  F RM +EG
Sbjct: 165 VSEVLGSFKRMVDEG 179


>gb|EXC10733.1| hypothetical protein L484_025317 [Morus notabilis]
          Length = 659

 Score =  141 bits (355), Expect = 1e-31
 Identities = 63/150 (42%), Positives = 109/150 (72%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGL-VMPNSFAIATVVSACA 179
           VFDEMPM  ++V+SW+++I  Y +N++  EAL +F  M  E    +PNS  + +V+ ACA
Sbjct: 241 VFDEMPM--KNVVSWSAMIACYVKNERPFEALELFWEMTLENRDSLPNSVTMVSVLQACA 298

Query: 180 HMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
            + +L+QG++IH Y  + GL+S  PV+++L+ MYA+CG L I + +F+ + ++DV+SWNS
Sbjct: 299 AIVALEQGKLIHGYILRRGLDSILPVMSTLVTMYARCGKLEIGQRVFDQMDKRDVVSWNS 358

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           +I+ YG+HG+G++A+++F  M + G+ P++
Sbjct: 359 LISSYGIHGYGRKAIQIFKDMISNGVSPNE 388



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRS----LD 197
           R +  WN++    A     ++   ++  M     +  + F    V+ AC    S    L 
Sbjct: 142 RTIYVWNAVFRALALAGHGMDVFELYCRMNWSSGIESDRFTYTYVLKACVASESSISLLR 201

Query: 198 QGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYG 377
           +G+ IH +  + G E+   ++ +L+DMYA+ G +  A  +F+ +P K+V+SW++MIA Y 
Sbjct: 202 KGKEIHAHVLRRGFEACVHIMTTLVDMYARFGCVLNASCVFDEMPMKNVVSWSAMIACYV 261

Query: 378 LHGHGKEAVELFYRMRNE 431
            +    EA+ELF+ M  E
Sbjct: 262 KNERPFEALELFWEMTLE 279



 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD+M    RDV+SWNSLI  Y  +    +A+ +F+ M+S G V PN     +V+ AC+H
Sbjct: 344 VFDQMDK--RDVVSWNSLISSYGIHGYGRKAIQIFKDMISNG-VSPNEITFISVLGACSH 400

Query: 183 MRSLDQGEIIHD-YARQHGLESETPVINSLIDMYAKCGNLGIARELFENI---PRKDVIS 350
              + +G+++ D   R+HG+         L+D+  +   L  A ++ E++   P   V  
Sbjct: 401 AGLVVEGKMLFDSMCREHGMYPSMEHYACLVDLLGRANRLDEAAKVVEDMRIEPGSKV-- 458

Query: 351 WNSMIAGYGLH 383
           W +++    +H
Sbjct: 459 WGALLGSCKIH 469


>ref|XP_006414062.1| hypothetical protein EUTSA_v10024377mg [Eutrema salsugineum]
           gi|557115232|gb|ESQ55515.1| hypothetical protein
           EUTSA_v10024377mg [Eutrema salsugineum]
          Length = 872

 Score =  141 bits (355), Expect = 1e-31
 Identities = 68/149 (45%), Positives = 101/149 (67%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EMP+  +D+ISWN++I GY++N    EAL++F  ++ E  +  +   +A V+ ACA 
Sbjct: 455 VFSEMPV--KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKQLNADERTVACVLPACAS 512

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + + D+G  IH Y  ++G  S+  V NSL+DMYAKCG L +AR LF+ +  KD++SW  M
Sbjct: 513 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDEVASKDLVSWTVM 572

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPSQ 449
           IAGYG+HG G E++ LF RMR  G++P +
Sbjct: 573 IAGYGMHGIGAESIALFNRMREAGIEPDE 601



 Score =  103 bits (258), Expect = 2e-20
 Identities = 59/147 (40%), Positives = 85/147 (57%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFDEM    RDVISWNS+I GY  N    + L++F  M+S G+ +  +  I +V ++CA 
Sbjct: 253 VFDEMTE--RDVISWNSMINGYVSNGLAEQGLSLFVQMLSSGMDIDLA-TIVSVFASCAD 309

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
            R L  G  +H    +  L  +    N+L+DMYAKCG+L  +  +F  +  + V+S+ SM
Sbjct: 310 SRLLSLGRAVHSLGLKACLGRQERFCNTLLDMYAKCGDLDSSIAVFTEMSDRSVVSYTSM 369

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKP 443
           IAGY   G   EAV+LF  M  +G+ P
Sbjct: 370 IAGYAREGLAGEAVKLFTEMEEKGISP 396



 Score =  101 bits (252), Expect = 9e-20
 Identities = 51/143 (35%), Positives = 89/143 (62%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VF EM    R V+S+ S+I GYA+     EA+ +F  M  +G + P+ + +  V++ CA 
Sbjct: 354 VFTEMSD--RSVVSYTSMIAGYAREGLAGEAVKLFTEMEEKG-ISPDVYTVTAVLNCCAR 410

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
            R L++G+ +H++ +++ +  +  + N+L+DMYAKCG++  A  +F  +P KD+ISWN++
Sbjct: 411 NRLLEEGKRVHEWIKENDMGFDIFLSNALMDMYAKCGSMQEAELVFSEMPVKDIISWNTI 470

Query: 363 IAGYGLHGHGKEAVELFYRMRNE 431
           I GY  + +  EA+ LF  +  E
Sbjct: 471 IGGYSKNCYANEALSLFNLLLEE 493



 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 44/145 (30%), Positives = 82/145 (56%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD +   +   + WN L+   A++     ++ +F+ M+S G+ M +S+  + +  + + 
Sbjct: 152 VFDHV--RIEKALFWNILMNELAKSGDFSGSIGLFKKMLSSGVEM-DSYTFSCISKSFSS 208

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           +RS++ GE +H +  + G      V NSL+  Y K   +  AR++F+ +  +DVISWNSM
Sbjct: 209 LRSVNGGEQLHGFILKSGFGDCNSVANSLVAFYLKNQRVESARKVFDEMTERDVISWNSM 268

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGL 437
           I GY  +G  ++ + LF +M + G+
Sbjct: 269 INGYVSNGLAEQGLSLFVQMLSSGM 293



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           +FDE+    +D++SW  +I GY  +    E++ +F  M   G + P+  +  +V+ AC+H
Sbjct: 557 LFDEVAS--KDLVSWTVMIAGYGMHGIGAESIALFNRMREAG-IEPDEISFVSVLYACSH 613

Query: 183 MRSLDQGEIIHDYARQH-GLESETPVINSLIDMYAKCGNLGIARELFENIP-RKDVISWN 356
              +D+G    +  R    +E        ++DM A+ GNL  A    EN+P   D   W 
Sbjct: 614 SGLVDEGWRFFNIMRHECKIEPTLEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWG 673

Query: 357 SMIAGYGLH 383
           +++ G  +H
Sbjct: 674 ALLCGCRIH 682


>gb|EOY33923.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao]
          Length = 651

 Score =  141 bits (355), Expect = 1e-31
 Identities = 65/149 (43%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGL-VMPNSFAIATVVSACA 179
           VF EMP+  R+V+SW+++I  YA+N +  EAL +FR M+ E     PNS  + +V+ ACA
Sbjct: 233 VFGEMPV--RNVVSWSAMIACYAKNGKSFEALELFREMMVETHDSFPNSVTMVSVLQACA 290

Query: 180 HMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
            + +L+QG++IH Y  + GL+S  PVI++LI MY++CG L + + +F+ + ++DV+SWNS
Sbjct: 291 ALAALEQGKLIHAYILRRGLDSVLPVISALITMYSRCGKLELGQRIFDQMEKRDVVSWNS 350

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           +I+ Y +HG GK+A+++F  M ++G+ PS
Sbjct: 351 LISSYAVHGFGKKAIQIFQEMIHQGVSPS 379



 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
 Frame = +3

Query: 30  RDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSL----D 197
           R +  WN+L           E L ++R M   G +  + F    V+ AC     L     
Sbjct: 135 RTIFVWNALFRALTLAGFGEEVLGLYRQMNRTG-IPSDRFTYTYVLKACVASECLVSLLK 193

Query: 198 QGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYG 377
           +G+ IH Y  +HG E+   ++ +L+DMYA+ G +  A  +F  +P ++V+SW++MIA Y 
Sbjct: 194 KGKEIHAYILRHGYEAHVHIMTTLVDMYARFGCVSCASFVFGEMPVRNVVSWSAMIACYA 253

Query: 378 LHGHGKEAVELFYRMRNE 431
            +G   EA+ELF  M  E
Sbjct: 254 KNGKSFEALELFREMMVE 271



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 27/100 (27%), Positives = 53/100 (53%)
 Frame = +3

Query: 138 PNSFAIATVVSACAHMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIAREL 317
           P+      ++ +CAH  SL   + +H +  Q+G + +  ++  LI MY+   +L  AR+L
Sbjct: 69  PSQRTYELLILSCAHQNSLSLAQSLHSHISQNGFDQDPFLVTKLISMYSALDSLDDARKL 128

Query: 318 FENIPRKDVISWNSMIAGYGLHGHGKEAVELFYRMRNEGL 437
           F+   ++ +  WN++     L G G+E + L+ +M   G+
Sbjct: 129 FDKTRKRTIFVWNALFRALTLAGFGEEVLGLYRQMNRTGI 168


>ref|XP_004250510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Solanum lycopersicum]
          Length = 652

 Score =  140 bits (354), Expect = 1e-31
 Identities = 63/148 (42%), Positives = 108/148 (72%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD+MP   ++++SW+++I  YA+N + +EA +VFR M++  +++PNS  + +VV ACA 
Sbjct: 235 VFDQMPQ--KNMVSWSAMIGCYAKNGKPLEAFDVFRDMMNH-VLLPNSVTMVSVVQACAA 291

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + +L+QG+++H Y  + GL+S  PV+++L+ MYA+CG L + R +F+ + ++DV++WNSM
Sbjct: 292 LGALEQGKVLHGYILRKGLDSILPVLSALVTMYARCGALELGRRVFDQMGKRDVVAWNSM 351

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           I+ YG+HG G +A+E F  M   G+ PS
Sbjct: 352 ISSYGIHGFGGKAIETFREMIRHGVSPS 379



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 47/148 (31%), Positives = 82/148 (55%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAH 182
           VFD++  + R +  WN+           VE L ++  M S G++  + F    V+ ACA 
Sbjct: 135 VFDKI--NNRTIFLWNAFFRALTLAGNGVEVLKLYTRMNSIGIIS-DRFTYTYVLKACA- 190

Query: 183 MRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSM 362
           + SL + + IH    +HG  + T ++ +LID+YA+ G +  A  +F+ +P+K+++SW++M
Sbjct: 191 VASLPKHKEIHAQLFRHGYHTHTHIMTTLIDVYARFGYVENAACVFDQMPQKNMVSWSAM 250

Query: 363 IAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           I  Y  +G   EA ++F  M N  L P+
Sbjct: 251 IGCYAKNGKPLEAFDVFRDMMNHVLLPN 278



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 31/132 (23%), Positives = 61/132 (46%)
 Frame = +3

Query: 42  SWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNSFAIATVVSACAHMRSLDQGEIIHDY 221
           ++N  I  Y +  +  +AL +     +     PN      ++ +C+   S   G  +H  
Sbjct: 49  NYNDSIQSYCKKGELKQALQLLSQEPN-----PNQHTYELLILSCSEKNSFHDGLTVHRK 103

Query: 222 ARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNSMIAGYGLHGHGKEA 401
               G E +  +   LI+MY+   ++  AR++F+ I  + +  WN+      L G+G E 
Sbjct: 104 LIDDGFEQDPFLATKLINMYSNLDSIDHARQVFDKINNRTIFLWNAFFRALTLAGNGVEV 163

Query: 402 VELFYRMRNEGL 437
           ++L+ RM + G+
Sbjct: 164 LKLYTRMNSIGI 175


>ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540342|gb|EEF41913.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 414

 Score =  140 bits (354), Expect = 1e-31
 Identities = 66/149 (44%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVM-PNSFAIATVVSACA 179
           VF EM +  ++V+SW+++I  YA+N +  EAL +FR M+ E   M PNS  + +V+ ACA
Sbjct: 233 VFSEMSV--KNVVSWSAMIACYAKNGRPFEALELFREMMLETKDMCPNSVTMVSVLQACA 290

Query: 180 HMRSLDQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVISWNS 359
            + +L+QG+++H Y  + GL+S  PVI+SL+ MYA+CG L +A+ +F+ + ++DV+SWNS
Sbjct: 291 ALAALEQGKLLHGYILRRGLDSILPVISSLVTMYARCGKLQLAQHVFDQMDKRDVVSWNS 350

Query: 360 MIAGYGLHGHGKEAVELFYRMRNEGLKPS 446
           +I+ YG+HG GK+A+++F  M   G+ PS
Sbjct: 351 LISSYGVHGFGKKAIQIFKDMTRNGVFPS 379



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
 Frame = +3

Query: 3   VFDEMPMHLRDVISWNSLICGYAQNDQDVEALNVFRYMVSEGLVMPNS-FAIATVVSACA 179
           VFD+     R +  +N+L           E L ++R M S G  MP+  F    V+ AC 
Sbjct: 128 VFDKT--RSRTLYVYNALFRALTLVGNGEEVLRLYRRMNSIG--MPSDRFTYTYVLKACV 183

Query: 180 HMRSL----DQGEIIHDYARQHGLESETPVINSLIDMYAKCGNLGIARELFENIPRKDVI 347
              SL     +G+ IH    + G E+   ++ +L+DMYA+ G +  A  +F  +  K+V+
Sbjct: 184 ASNSLLSLLKKGKEIHAQILRRGYEAHVHIMTTLVDMYARFGYVSYASCVFSEMSVKNVV 243

Query: 348 SWNSMIAGYGLHGHGKEAVELFYRMRNE 431
           SW++MIA Y  +G   EA+ELF  M  E
Sbjct: 244 SWSAMIACYAKNGRPFEALELFREMMLE 271