BLASTX nr result
ID: Ephedra25_contig00023867
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00023867
(1400 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218... 139 2e-30
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 139 2e-30
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 131 6e-28
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 127 9e-27
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 127 1e-26
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 124 1e-25
ref|XP_002326954.1| predicted protein [Populus trichocarpa] 119 3e-24
gb|EMJ27722.1| hypothetical protein PRUPE_ppa024709mg, partial [... 117 1e-23
ref|XP_002326952.1| predicted protein [Populus trichocarpa] 116 2e-23
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 115 4e-23
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 115 4e-23
gb|AFW66507.1| putative DNA-directed RNA polymerase family prote... 115 6e-23
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 114 1e-22
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 114 1e-22
ref|XP_002877497.1| hypothetical protein ARALYDRAFT_905861 [Arab... 114 1e-22
ref|XP_004963608.1| PREDICTED: DNA-directed RNA polymerase E sub... 114 1e-22
gb|EOY14369.1| Uncharacterized protein TCM_033766 [Theobroma cacao] 114 1e-22
ref|NP_001148429.1| DCL protein [Zea mays] gi|195619226|gb|ACG31... 113 2e-22
ref|XP_006434703.1| hypothetical protein CICLE_v10002565mg [Citr... 113 2e-22
ref|XP_004141259.1| PREDICTED: protein DCL, chloroplastic-like [... 113 2e-22
>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1| Protein
DCL [Medicago truncatula]
Length = 481
Score = 139 bits (351), Expect = 2e-30
Identities = 100/359 (27%), Positives = 170/359 (47%), Gaps = 29/359 (8%)
Frame = +1
Query: 10 LENGKNSEPETAGDEAEWNGHVSVTNSSCDN----GTTNVVKRDVKESSPGENNADVSTL 177
+ G++++ + + + +W V+ G T D SS G+ ++ +
Sbjct: 50 VHEGESTKVQDSWNSQKWKAAEDVSQKDSQKSSAWGATKPKSND-NRSSWGQKKDEIHVM 108
Query: 178 PEIPNSSHQKNQWQQDVVDS--------HDTWG---SPHSKPNDPKEFPS-SCGATEKQD 321
PE + S+ Q ++V DS + +WG SP ++P D K P+ S G Q+
Sbjct: 109 PEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPNNSFGKPNSQE 168
Query: 322 ------VSTSNGRKFKPTAANIARLKAKRISKNAQDKRATGTNEML-AKNKSDSVEEGSG 480
+ S+ KP + +K S ++ K + N +KN+S+ G
Sbjct: 169 NEPWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQTAGSRG 228
Query: 481 WGEALASASDRN------GSSGWEQSEKMSFHASSSPWPTSTANVRRSERLMKPRNHQNS 642
W +ASA+ + G G + +K F S S P + RS + P
Sbjct: 229 WDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRSRPVRPP----GQ 284
Query: 643 HEQLSSKYPHEMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGK 822
+L + ++ +++EP+V SI+RI++ Y +G+ L ED+ VL+ V HH + + K
Sbjct: 285 RFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETK 344
Query: 823 RGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKEF 999
G GVD++M+ H+ + SRC ++V KDG + DFSY KCL+ LV KYPE AE+F ++
Sbjct: 345 MGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKY 403
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 139 bits (351), Expect = 2e-30
Identities = 100/359 (27%), Positives = 170/359 (47%), Gaps = 29/359 (8%)
Frame = +1
Query: 10 LENGKNSEPETAGDEAEWNGHVSVTNSSCDN----GTTNVVKRDVKESSPGENNADVSTL 177
+ G++++ + + + +W V+ G T D SS G+ ++ +
Sbjct: 1601 VHEGESTKVQDSWNSQKWKAGEDVSQKDSQKSSAWGATKPKSND-NRSSWGQKKDEIHVM 1659
Query: 178 PEIPNSSHQKNQWQQDVVDS--------HDTWG---SPHSKPNDPKEFPS-SCGATEKQD 321
PE + S+ Q ++V DS + +WG SP ++P D K P+ S G Q+
Sbjct: 1660 PEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPNNSFGKPNSQE 1719
Query: 322 ------VSTSNGRKFKPTAANIARLKAKRISKNAQDKRATGTNEML-AKNKSDSVEEGSG 480
+ S+ KP + +K S ++ K + N +KN+S+ G
Sbjct: 1720 NEPWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQTAGSRG 1779
Query: 481 WGEALASASDRN------GSSGWEQSEKMSFHASSSPWPTSTANVRRSERLMKPRNHQNS 642
W +ASA+ + G G + +K F S S P + RS + P
Sbjct: 1780 WDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRSRPVRPP----GQ 1835
Query: 643 HEQLSSKYPHEMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGK 822
+L + ++ +++EP+V SI+RI++ Y +G+ L ED+ VL+ V HH + + K
Sbjct: 1836 RFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETK 1895
Query: 823 RGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKEF 999
G GVD++M+ H+ + SRC ++V KDG + DFSY KCL+ LV KYPE AE+F ++
Sbjct: 1896 MGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKY 1954
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 131 bits (330), Expect = 6e-28
Identities = 104/376 (27%), Positives = 170/376 (45%), Gaps = 43/376 (11%)
Frame = +1
Query: 19 GKNSEPETAGDEAEWNGHVSVTNSSCDNGTTNV-------VKRDVKESSPGENNADVSTL 177
G NS +T EW+G + G+ NV ++DV + + + +
Sbjct: 1644 GANSTGQTKSKSNEWSGRGKNKSEIPAGGSENVQDSWGSGTRKDVTQVDTSVSGSWGGSR 1703
Query: 178 PEIPNS-SHQKNQWQQDVVD---------SHDTWGSPHSKPNDPKEFPSSCGA------- 306
+ N+ S++ W ++ + D+WGS K + ++ S GA
Sbjct: 1704 KDQTNTTSNEWAGWGRNKSEIPAGGCETVQEDSWGSGKLKDDVTQKDNSGSGAWGANKTG 1763
Query: 307 ---TE-----KQDVSTSNG--RKFKPTAANIARLKAKRISKNAQ--DKRATGTNEMLAKN 450
TE + V T++G K + + N LK++ NA ++G+ + N
Sbjct: 1764 LTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKSESKVGNASWGKPNSSGSQSWDSHN 1823
Query: 451 KSDSVEEGSGWGEALASASDRN------GSSGWEQSEKMSFHASSSPWPTSTANVRRSER 612
+S+ GW +ASA+ + G G E +K F S S R+
Sbjct: 1824 QSNQNSSSRGWESHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGSNSGDWKNRN-- 1881
Query: 613 LMKPRNHQNSHEQLSSKYPHEMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKV 792
+P L S ++ +E+EP++ SI+RI++ Y +G+ L +D+ VL+ V
Sbjct: 1882 --RPPRTPGQRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYNDGDPLAADDQLFVLENV 1939
Query: 793 LVHHHNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPE 972
HH + K G G+DY+M++ H+ + SRCF++V KDG R DFSY KCL + KYPE
Sbjct: 1940 FEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPE 1999
Query: 973 HAENFI-KEFLLPRNQ 1017
AE+F K F PRN+
Sbjct: 2000 LAESFFGKYFRKPRNR 2015
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 127 bits (320), Expect = 9e-27
Identities = 96/338 (28%), Positives = 156/338 (46%), Gaps = 10/338 (2%)
Frame = +1
Query: 37 ETAGDEAEWNGHVSVTNSSCDNGTTNVVKRDVKESSPGENNADVSTLPEIPNSSHQKNQW 216
E + +W VT S G+ K K S + ++ EI + +K Q
Sbjct: 1877 EDSWKSQKWKAGADVTQDSPKMGSWGATKDATKPKS-NDWSSWGKKKDEIHDGGSEKIQ- 1934
Query: 217 QQDVVDSHDTWGSPHSKPNDPKEFPSSCGATEKQDVSTSNGRKFKPTAANIARLKAKRIS 396
D+W S K S ++D S SN + K + ++
Sbjct: 1935 -------EDSWSSGKRKAES-----KSVADVMQEDSSKSNTWEHKSDDVKDSWDAKVPVA 1982
Query: 397 KNAQDKRATGTNEML-AKNKSDSVEEGSGWGEALASA---SDRN---GSSGWEQSEKMSF 555
++ K + N+ +KN+S+ GW +ASA SD+N G G E +K F
Sbjct: 1983 NSSWGKPKSQENQPWDSKNESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKNRF 2042
Query: 556 HAS--SSPWPTSTANVRRSERLMKPRNHQNSHEQLSSKYPHEMWQELEPLVTSIKRILRP 729
S S W ++ + + R +P L S ++ +++EP+V SI+RI++
Sbjct: 2043 EGSQGSQGWGSNAGDWKNKNRPARP---PGPRLDLYSSEEQDILKDIEPIVQSIRRIMQQ 2099
Query: 730 SSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDG 909
Y +G+ L ED+ VL+ V HH + + K G G+D++M+ H+ + SRCF++V KDG
Sbjct: 2100 QGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDG 2159
Query: 910 TRTDFSYIKCLKALVETKYPEHAENFI-KEFLLPRNQK 1020
+ DFSY KCL++ V KY + AE+F K F PR ++
Sbjct: 2160 KKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPRPKR 2197
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 127 bits (319), Expect = 1e-26
Identities = 86/301 (28%), Positives = 141/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 148 GENNADVSTLPEIPNSSHQKNQWQQDVVDS----HDTWGSPHSKPNDPKEFPSSCGATEK 315
G N D++ SS KN+ + S +D+WGS + + KE S K
Sbjct: 1740 GANRTDLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNK 1799
Query: 316 QDVSTSNGRKFKPTAANIARLKAKRISKNAQ--DKRATGTNEMLAKNKSDSVEEGSGWGE 489
+ K + A N KA+ NA +++ + + N+S+ GW
Sbjct: 1800 AETIDGGSEKPQEDAWNSGNWKAESKVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWES 1859
Query: 490 ALASASDRN------GSSGWEQSEKMSFHASSSPWPTSTANVRRSERLMKPRNHQNSHEQ 651
+ASA+ + G G + +K F S +N + +P
Sbjct: 1860 HIASANSESEKGFQWGKQGRDSFKKNRFEGSQG----RGSNAGDWKNRNRPPRAPGQRLD 1915
Query: 652 LSSKYPHEMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGC 831
+ S ++ +++EP++ SI+RI++ Y +G+ L ED+ VL+ V HH + + K G
Sbjct: 1916 IYSSGEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGT 1975
Query: 832 GVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFI-KEFLLP 1008
G+DY+M++ H+ + SRCF++V KDG DFSY KCL + KYP+ AE+F+ K F P
Sbjct: 1976 GIDYVMVNKHSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKP 2035
Query: 1009 R 1011
R
Sbjct: 2036 R 2036
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 124 bits (311), Expect = 1e-25
Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%)
Frame = +1
Query: 148 GENNADVSTLPEIPNSSHQKNQWQQDVVDS----HDTWGSPHSKPNDPKEFPSSCGATEK 315
G N D++ SS KN+ + S +D+WG K ND ++ S CGA +
Sbjct: 1690 GANRTDLAITKSSEWSSWGKNKTEIPAGGSANVQNDSWGL--GKLNDTQKDNSGCGAWGE 1747
Query: 316 QDVS--------TSNGRKFKPT--AANIARLKAK-RISKNAQDK-RATGTNEMLAKNKSD 459
S T +G KP A N KA+ ++ K +++ ++ + N+S+
Sbjct: 1748 NSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESKVGNTTWGKPKSSESHAWDSHNQSN 1807
Query: 460 SVEEGSGWGEALASASDRNGSS-----GWEQSEKMSFHASSSPWPTSTANVRRSERLMKP 624
GW +ASA+ N G + +K F S +N + +P
Sbjct: 1808 QNSSSQGWESHIASANSENEKGFQWGKGRDSFKKNRFEGSQG----RGSNAGDWKNRNRP 1863
Query: 625 RNHQNSHEQLSSKYPHEMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHH 804
+ S ++ +++EP++ SI+RI++ Y++G+ L ED+ VL+ V HH
Sbjct: 1864 PRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHH 1923
Query: 805 HNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAEN 984
+ + K G G+DY+M++ H+ + SRCF++V KDG DFSY KCL + KYP+ AE+
Sbjct: 1924 PDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAES 1983
Query: 985 FI-KEFLLPR 1011
F+ K F PR
Sbjct: 1984 FLGKYFRKPR 1993
>ref|XP_002326954.1| predicted protein [Populus trichocarpa]
Length = 125
Score = 119 bits (298), Expect = 3e-24
Identities = 53/108 (49%), Positives = 73/108 (67%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+W+++EP+ K IL + Y +GE+L EDE V ++LV+H N K GCG+D + +
Sbjct: 15 EIWRDIEPIAHLAKEILHSNRYKDGEQLTDEDEKAVAGRLLVYHPNCDDKVGCGLDSIAV 74
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H+ + TSRC F+VR DG DFSY KCL+A ++ KYP HAE FIKE
Sbjct: 75 DRHSHFKTSRCLFVVRSDGGWIDFSYRKCLRAYIQFKYPTHAERFIKE 122
>gb|EMJ27722.1| hypothetical protein PRUPE_ppa024709mg, partial [Prunus persica]
Length = 146
Score = 117 bits (293), Expect = 1e-23
Identities = 51/108 (47%), Positives = 73/108 (67%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+ ++EPL+ K IL Y +GERL EDE V++++L HH +++ K GCG+D +M+
Sbjct: 32 EILNDIEPLILLAKEILHSDRYMDGERLSAEDEKVVVERLLAHHPHSEDKIGCGIDSIMV 91
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H ++ SRC F++R DG DFSY KCL+A + KYP HAE FI+E
Sbjct: 92 DRHPQFRHSRCLFVIRTDGIWIDFSYQKCLRAYIRDKYPSHAERFIRE 139
>ref|XP_002326952.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 116 bits (291), Expect = 2e-23
Identities = 50/108 (46%), Positives = 73/108 (67%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
++W+++EP+ K I+ Y +GE+L EDE V +++L +H N+ K GCG+D +M+
Sbjct: 82 DIWRDIEPITHLAKEIIHSDRYMDGEQLTDEDEKVVAERLLAYHPNSDDKIGCGLDSIMV 141
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H ++ SRC F+VR DG DFSY KCL+A + +KYP HAE FIKE
Sbjct: 142 DRHPQFKNSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPTHAERFIKE 189
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 115 bits (288), Expect = 4e-23
Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 4/331 (1%)
Frame = +1
Query: 31 EPETAGDEAEWNGHVSV--TNSSCDNGTTNVVKRDVKESSPGENNADVSTLPEIPNSSHQ 204
+P A +E+ +G S +N D+G V + G ++ + + P S +
Sbjct: 1678 KPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLE 1737
Query: 205 KNQWQQDVVDSHDTWGSPHSKPNDPKEFPSSCGATEKQDVSTSNGRKFKPTAANIARLKA 384
+Q DS +WG P + C + D ST ++LK
Sbjct: 1738 ASQSWGSQNDSLGSWGQPQRASEE-------CSRESQDDSSTQ-----------FSQLKP 1779
Query: 385 KRISKNAQDKRATGTNEMLAKNKSDSVEEGS-GWGEALASASDRNGSSGWEQSEKMSFHA 561
S + +++ + NK S + S GW + + G++G E + +
Sbjct: 1780 PETSLGWEQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSKGWGGNAG-EWKNRKNRPP 1838
Query: 562 SSSPWPTSTANVRRSERLMKPRNHQNSHEQLSSKYPHEMWQELEPLVTSIKRILRPSSYT 741
S AN+R R + E+ ++ ++EP++ SI++++ S Y
Sbjct: 1839 KSPGMSNDDANLRALYTASGQRLDMFTSEE------QDILADIEPIMQSIRKVMHQSGYN 1892
Query: 742 NGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTD 921
+G+ L ED++ VL+ V H + K G G+D+ M+ H+ + SRCF++V DG + D
Sbjct: 1893 DGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKED 1952
Query: 922 FSYIKCLKALVETKYPEHAENFI-KEFLLPR 1011
FSY KCL ++ KYP+ AE F+ K F PR
Sbjct: 1953 FSYRKCLDNFIKGKYPDLAEMFVAKYFRKPR 1983
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 115 bits (288), Expect = 4e-23
Identities = 90/370 (24%), Positives = 160/370 (43%), Gaps = 38/370 (10%)
Frame = +1
Query: 16 NGKNSEPETAGDEAEWNGHVSVTNSSCDNGTTNVVKRDVKESSPGENNADVSTLPEIPNS 195
N K+S+ E+ G A W G T S ++ K +S P + PE +
Sbjct: 1485 NKKSSKTESDG--ATW-GSSDKTKSGAAAWSSWDKKNMETDSEPAAWGSQSKNKPETESG 1541
Query: 196 SHQKNQWQQDVVDSHDT---WGSPHSKPNDPKEFPSSCGATEKQDVSTSNG-RKFKPTAA 363
W ++ WG K ++ + P++ G +K+ +T +G + T A
Sbjct: 1542 PSTWGAWDTKKSETESGPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGSTDA 1601
Query: 364 NIARLKAKRISKNAQDKRATGTNEMLAKNKSDSVEEGSGWGEALASASDRNGSSG----W 531
+ K S+ D A G+ + WG+ +A++ + + W
Sbjct: 1602 AVWGFSDKNNSETESDAAAWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPW 1661
Query: 532 -----------EQSEKMSFHASSSPWPTSTA---------NVRRSERLMKPRNHQN---- 639
+ E++ + + +P+S +R+ PR+ N
Sbjct: 1662 VSLKETKSRDKDDKERIQWGNPAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDNLAPM 1721
Query: 640 ---SHEQLSS--KYPHEMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHH 804
+ ++L S E+ ++EP++ ++++I+ PS+Y +G+ + +D+ VL+K+L H
Sbjct: 1722 FTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFH 1781
Query: 805 HNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAEN 984
+ K G GVD++ +D H + SRCFF+V DG + DFSY K L + KYP+ AE
Sbjct: 1782 PQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEE 1841
Query: 985 FI-KEFLLPR 1011
FI K F PR
Sbjct: 1842 FIDKYFTKPR 1851
>gb|AFW66507.1| putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 660
Score = 115 bits (287), Expect = 6e-23
Identities = 88/328 (26%), Positives = 148/328 (45%), Gaps = 15/328 (4%)
Frame = +1
Query: 82 TNSSCDNGTTNVVKRDVKESSPGENNADVSTLPEIPNSSHQKNQWQQD----VVDSHDTW 249
TN+ D+ NV+ + G+ + +S ++++ + D V DTW
Sbjct: 233 TNADHDSSYNNVMPSSEIAWNAGDGTGRPNAKSNAESSWGEEDKMESDDHPKVPKESDTW 292
Query: 250 --GSPHSKPNDPKE-FPSSCGATEKQDVSTSNGRKFKPTAANIARLKAKRISKNAQDKRA 420
G + P D + S + ++ +T +G K + +K +++ K
Sbjct: 293 NTGRSNESPWDNTDALQDSWVKSAARNNNTQDGSWDK-----VVSMKDLDSLQDSWSKAT 347
Query: 421 TGTNEM-------LAKNKSDSVEEGSGWGEALASASDRNGSSGWEQSEKMSFHASSSPWP 579
TN+ +AKN DS E S WG A + + +G+ W+ + A S W
Sbjct: 348 IQTNDAQNDSWDNVAKNAPDSAAEDS-WGAATPAETTDSGNKEWKSD---GWGAKSGNWS 403
Query: 580 TSTANVRRSERLMKPRNHQNSHEQLSSKYPHE-MWQELEPLVTSIKRILRPSSYTNGERL 756
+ N R R R ++ + + E+EP+ ++ I R + +G RL
Sbjct: 404 SQRNNPGRPPRRPDERGPPPPRQRFELTVAEKNILLEVEPIKLRVRSIFREAC--DGVRL 461
Query: 757 QPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIK 936
PEDE +L+KVL HH Q K +DYL ++ H + +RCFF+V DG++ DFSY+K
Sbjct: 462 NPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLK 521
Query: 937 CLKALVETKYPEHAENFIKEFLLPRNQK 1020
CL+ V Y E A+ F ++L PR ++
Sbjct: 522 CLENFVRKSYTEDADTFCMKYLRPRRRQ 549
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 114 bits (285), Expect = 1e-22
Identities = 90/353 (25%), Positives = 154/353 (43%), Gaps = 20/353 (5%)
Frame = +1
Query: 16 NGKNSEPETAG---DEAEWNGHVSVTNSSCDNGTTNVVKRDVKESSPGENNADVSTLPEI 186
+G +E + +G D +EW H + T S NG+ D K S N + L ++
Sbjct: 1509 SGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASW---NTKALDKLDDV 1565
Query: 187 PNSSHQKNQWQQDVVDSHDTWGSPHSKPNDPKEFPSSCGATEKQDVSTSNGRKFKPT-AA 363
++ V +S WG+ E S A EK V G
Sbjct: 1566 GSA----------VENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGT 1615
Query: 364 NIARLKAKRISKNAQ--DKRATGTNEMLAKNKSDSVEEGSGWGEALASASDRNGSSGWEQ 537
+ + +++++NA+ D + G + +N+S + W A+ W Q
Sbjct: 1616 DDSSWGKQKLTENAKGTDDSSWGKQKH-TENESSQPASSNAWDLPDATGGSETEMQVWGQ 1674
Query: 538 SEKMSFH------ASSSPWPTSTANVRRSERLMKPRNHQNSHEQLS-------SKYPHEM 678
S K F +SS W RS ++ + N+ ++ + ++
Sbjct: 1675 SRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDI 1734
Query: 679 WQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMIDY 858
++EP++ SI+RI+ S Y +G+RL +D++ + V +H + K G G+D+ +D
Sbjct: 1735 LSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDK 1794
Query: 859 HNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFI-KEFLLPRN 1014
H + SRC F+V DG++ DFSY KCL++ + KYPE + FI K F PR+
Sbjct: 1795 HGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRRPRS 1847
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 114 bits (285), Expect = 1e-22
Identities = 88/345 (25%), Positives = 147/345 (42%), Gaps = 18/345 (5%)
Frame = +1
Query: 31 EPETAGDEAEWNGHVSV--TNSSCDNGTTNVVKRDVKESSPGENNADVSTLPEIPNSSHQ 204
+P A +E+ +G S +N D+G V + G ++ + + P S +
Sbjct: 1618 KPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLE 1677
Query: 205 KNQWQQDVVDSHDTWGSPHSKPNDPKEFPSSCGATEKQDVSTSNGRKFKPTAANIARLKA 384
+Q DS +WG P + C + E QD S++ + KP ++ +
Sbjct: 1678 ASQSWGSQNDSLGSWGQPQRASEE-------C-SRESQDDSSTQFSQLKPPETSLGWEQQ 1729
Query: 385 KRISKNAQDKRATGTNEMLAKNKSDSVEEGSGWGEALASASDRNGSSGWEQSEKMS--FH 558
K S E GWG S S++ S GW++ + S +
Sbjct: 1730 K------------------------SPEVSHGWGSHKES-SEQTSSHGWDKKNQGSKGWG 1764
Query: 559 ASSSPWPTSTANVRRSERLMKPRNHQNSHEQLSSKYP-------------HEMWQELEPL 699
++ W R R K N L + Y ++ ++EP+
Sbjct: 1765 GNAGEWKN------RKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPI 1818
Query: 700 VTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMIDYHNEYPTS 879
+ SI++++ S Y +G+ L ED++ VL+ V H + K G G+D+ M+ H+ + S
Sbjct: 1819 MQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQES 1878
Query: 880 RCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFI-KEFLLPR 1011
RCF++V DG + DFSY KCL ++ KYP+ AE F+ K F PR
Sbjct: 1879 RCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPR 1923
>ref|XP_002877497.1| hypothetical protein ARALYDRAFT_905861 [Arabidopsis lyrata subsp.
lyrata] gi|297323335|gb|EFH53756.1| hypothetical protein
ARALYDRAFT_905861 [Arabidopsis lyrata subsp. lyrata]
Length = 203
Score = 114 bits (285), Expect = 1e-22
Identities = 52/108 (48%), Positives = 74/108 (68%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+ +++EP+ K IL Y +GERL+ EDE V++K+L +H ++ K GCG+D++M+
Sbjct: 89 EILRDIEPIALLAKEILHSDRYLDGERLEFEDEKIVMEKLLAYHPYSKDKIGCGLDFIMV 148
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H ++ SRC F+VR DG DFSY KCL+A V KYP HAE FI+E
Sbjct: 149 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIRE 196
>ref|XP_004963608.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Setaria
italica]
Length = 189
Score = 114 bits (284), Expect = 1e-22
Identities = 54/108 (50%), Positives = 71/108 (65%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+ +++EP+V IK IL Y +GE L P DE V++K+L H AQ K GCG+D +M+
Sbjct: 77 EILRDIEPVVQLIKDILHSDRYGDGECLCPNDENVVVQKLLAFHPRAQDKIGCGLDAIMV 136
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H E+ SRC F+VR DG DFSY KCL+A + KYP H E FI+E
Sbjct: 137 DRHPEFRKSRCLFVVRTDGVWIDFSYQKCLRAYIREKYPSHGERFIRE 184
>gb|EOY14369.1| Uncharacterized protein TCM_033766 [Theobroma cacao]
Length = 197
Score = 114 bits (284), Expect = 1e-22
Identities = 51/106 (48%), Positives = 73/106 (68%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+ +++EP+++ K IL Y +GERL EDE V++K+L HH +++ K GCG+D +M+
Sbjct: 83 EILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMV 142
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFI 990
D H ++ SRC F+VR DG DFSY KCL+A + KYP HAE FI
Sbjct: 143 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI 188
>ref|NP_001148429.1| DCL protein [Zea mays] gi|195619226|gb|ACG31443.1| DCL protein [Zea
mays] gi|414872815|tpg|DAA51372.1| TPA: DCL protein [Zea
mays]
Length = 188
Score = 113 bits (283), Expect = 2e-22
Identities = 53/108 (49%), Positives = 73/108 (67%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+ ++++P+V IK IL Y +GE L P DE V++K+L +H AQ K GCG+D +M+
Sbjct: 76 EILRDIDPVVLLIKDILHSDRYGDGECLCPRDENVVVEKLLSYHPRAQDKIGCGLDAIMV 135
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H E+ SRC F+VR DG DFSY KCL+A + KYP HA+ FI+E
Sbjct: 136 DRHPEFRKSRCLFVVRTDGVWIDFSYQKCLRAYIREKYPSHADRFIRE 183
>ref|XP_006434703.1| hypothetical protein CICLE_v10002565mg [Citrus clementina]
gi|557536825|gb|ESR47943.1| hypothetical protein
CICLE_v10002565mg [Citrus clementina]
Length = 194
Score = 113 bits (282), Expect = 2e-22
Identities = 50/108 (46%), Positives = 74/108 (68%)
Frame = +1
Query: 673 EMWQELEPLVTSIKRILRPSSYTNGERLQPEDEAEVLKKVLVHHHNAQGKRGCGVDYLMI 852
E+ +++EP++ K IL Y +GERL +DE V++K+L +H +++ K GCG+D +M+
Sbjct: 80 EILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMV 139
Query: 853 DYHNEYPTSRCFFIVRKDGTRTDFSYIKCLKALVETKYPEHAENFIKE 996
D H ++ SRC F+VR DG DFSY KCL+A + KYP HAE FI+E
Sbjct: 140 DRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIRE 187
>ref|XP_004141259.1| PREDICTED: protein DCL, chloroplastic-like [Cucumis sativus]
gi|449519344|ref|XP_004166695.1| PREDICTED: protein DCL,
chloroplastic-like [Cucumis sativus]
Length = 225
Score = 113 bits (282), Expect = 2e-22
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 9/135 (6%)
Frame = +1
Query: 613 LMKPRNHQNSHEQLSSKYPHEM-WQELE--------PLVTSIKRILRPSSYTNGERLQPE 765
L P +S E+ ++ E+ W + E PLV ++ +L Y NG+RL+PE
Sbjct: 78 LAGPSEDDDSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPE 137
Query: 766 DEAEVLKKVLVHHHNAQGKRGCGVDYLMIDYHNEYPTSRCFFIVRKDGTRTDFSYIKCLK 945
E +L+++L +H ++ K GCGVDY+ + YH ++ +SRC FIVRKDG DFSY KC+K
Sbjct: 138 HEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK 197
Query: 946 ALVETKYPEHAENFI 990
L+ YP +AE+FI
Sbjct: 198 GLIRKNYPLYAESFI 212