BLASTX nr result
ID: Ephedra25_contig00022701
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00022701
(821 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN66871.1| hypothetical protein VITISV_021425 [Vitis vinifera] 68 6e-15
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi... 55 4e-14
gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium ... 60 9e-14
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 62 3e-13
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 59 7e-13
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 66 7e-13
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 60 9e-13
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 65 1e-12
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 65 3e-12
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 65 3e-12
emb|CAN82144.1| hypothetical protein VITISV_043495 [Vitis vinifera] 64 3e-12
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 58 3e-12
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera] 61 5e-12
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera] 61 6e-12
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 63 9e-12
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 67 1e-11
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 65 2e-11
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 65 2e-11
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 65 2e-11
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 66 2e-11
>emb|CAN66871.1| hypothetical protein VITISV_021425 [Vitis vinifera]
Length = 338
Score = 67.8 bits (164), Expect(3) = 6e-15
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +2
Query: 581 SIWPHGRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNG 760
SI G +YF+LFIDDFT+M WV+ + K F IFK F + + + TLRS+ G
Sbjct: 260 SIPSQGNNKYFVLFIDDFTRMTWVFFMKQKSEVFSIFKKFKSFVEKQSGCYIKTLRSDKG 319
Query: 761 I*LVFKNMKNFCREKGITR 817
+ NFC+++GI R
Sbjct: 320 MEYTSSQFGNFCKDEGIER 338
Score = 31.2 bits (69), Expect(3) = 6e-15
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPM 596
E CD K + F K V R K+L+LIH D+ GPM
Sbjct: 221 EVCDGCALGKHHRQSFLKGVAWRAKKVLELIHTDICGPM 259
Score = 28.5 bits (62), Expect(3) = 6e-15
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Frame = +1
Query: 100 NLDSCCSSHMTPNAKLFTNL--TL*STMXXXXXXXXXXDYQKLINYGFGMNTVLHKYGDN 273
+LDS C++HMT N +F ++ T+ S Q L++ G V H Y
Sbjct: 80 SLDSGCTNHMTGNKNIFLDMDTTINSQGKAQLAFKLKSLEQNLLSVG---QLVEHGY--- 133
Query: 274 NIRIYFQNKPIGIG*VEGNIYVLEKLEETTN----------------MCKHESNFLWHYR 405
+++F+ I E +++K++ N M E +LWH R
Sbjct: 134 --KLHFEYNECTIYDNEQRRNLVKKIKMEKNRSFPIVFKYAENVALRMEDVEEAWLWHRR 191
Query: 406 LKHINNKYLKII 441
H+N LK++
Sbjct: 192 FGHLNFNSLKML 203
>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 822
Score = 55.1 bits (131), Expect(3) = 4e-14
Identities = 28/72 (38%), Positives = 37/72 (51%)
Frame = +2
Query: 605 RYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVFKNM 784
RY L FIDD T+M WVY L +K F+ FK F + N N ++ LR + G + K
Sbjct: 239 RYILTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEF 298
Query: 785 KNFCREKGITRE 820
F GI R+
Sbjct: 299 SEFLEGNGIERQ 310
Score = 35.4 bits (80), Expect(3) = 4e-14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 483 KCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPMEDKDI 611
KC+ +K + PFPK R L+LIH D+ GPM++ I
Sbjct: 193 KCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSI 235
Score = 33.9 bits (76), Expect(3) = 4e-14
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 352 EETTNMCKHESNFLWHYRLKHINNKYLKIIQN 447
EET + K E+ LWH RL H + LKI+Q+
Sbjct: 146 EETAMVAKDEATELWHKRLGHTGHSNLKILQS 177
>gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium castaneum]
Length = 2375
Score = 60.5 bits (145), Expect(3) = 9e-14
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +2
Query: 593 HGRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LV 772
H +RYFL F+DD+T VYLL SK FE FK F + TK+ TL+ +NG +
Sbjct: 486 HDGKRYFLTFLDDYTHFCVVYLLKSKSEVFEYFKCFESMVSAMFGTKIATLKCDNGREYL 545
Query: 773 FKNMKNFCREKGI 811
++ +FC+ KGI
Sbjct: 546 PNDLVSFCKGKGI 558
Score = 35.8 bits (81), Expect(3) = 9e-14
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +3
Query: 486 CDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPM 596
C+ ++K K+PF K N+T ++L+LIH DL GP+
Sbjct: 445 CEVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGPI 481
Score = 26.9 bits (58), Expect(3) = 9e-14
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 361 TNMCKHESNF-LWHYRLKHINNKYLKIIQNSS 453
+N+C+ ++ LWH RL H++NK L + ++
Sbjct: 396 SNVCEVSASLKLWHRRLGHLSNKNLVTLSKNN 427
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 61.6 bits (148), Expect(3) = 3e-13
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLI-TLRSNNGI*LV 772
G RYFLLF DD ++M+WVY L SK FE FK F K K + K I LR++ G +
Sbjct: 515 GGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKF-KAFVEKQSGKCIKVLRTDRGGEFL 573
Query: 773 FKNMKNFCREKGITRE 820
+ K FC E+G+ RE
Sbjct: 574 SNDFKVFCEEEGLHRE 589
Score = 33.5 bits (75), Expect(3) = 3e-13
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 486 CDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPME 599
C+ K K PFPK R L++IH DL GPM+
Sbjct: 473 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 510
Score = 26.6 bits (57), Expect(3) = 3e-13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 379 ESNFLWHYRLKHINNKYLKIIQNSSNLKKIVF 474
ESN LWH R H+N K LK++ K++VF
Sbjct: 436 ESN-LWHLRYGHLNVKGLKLLSK----KEMVF 462
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 58.9 bits (141), Expect(3) = 7e-13
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLI-TLRSNNGI*LV 772
G RYFLLF DD ++M+WVY L SK FE FK F K K + K I LR++ +
Sbjct: 626 GGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKF-KAFVEKQSGKCIKVLRTDRXGEFL 684
Query: 773 FKNMKNFCREKGITRE 820
+ K FC E+G+ RE
Sbjct: 685 SNDFKVFCEEEGLHRE 700
Score = 33.5 bits (75), Expect(3) = 7e-13
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 486 CDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPME 599
C+ K K PFPK R L++IH DL GPM+
Sbjct: 584 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 621
Score = 27.7 bits (60), Expect(3) = 7e-13
Identities = 43/171 (25%), Positives = 58/171 (33%), Gaps = 42/171 (24%)
Frame = +1
Query: 88 IADNN---LDSCCSSHMTPNAKLFTNLTL*STMXXXXXXXXXXDYQKLINYGFGMNTVLH 258
++ NN LDS CS+HMT LF L D Q + G TV
Sbjct: 427 VSSNNIWFLDSGCSNHMTGIKSLFKELD----ESHKLXVKLGDDXQVQVE---GKGTVAV 479
Query: 259 KYGDNNIRIYFQNKPIGIG*VEGNIYVLEKLEETTNMC---------------------- 372
G N+++ + N+Y + L E C
Sbjct: 480 NNGHGNVKLLY------------NVYFIPSLTEKLVKCGATYDKKSDQIIVDVRMAANKL 527
Query: 373 ---------KH--------ESNFLWHYRLKHINNKYLKIIQNSSNLKKIVF 474
KH ESN LWH R H+N K LK++ K++VF
Sbjct: 528 FPLEVSSIEKHALVVKETSESN-LWHLRYGHLNVKGLKLLSK----KEMVF 573
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 66.2 bits (160), Expect(3) = 7e-13
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVF 775
G +YF+LFIDDFT+M WV+ + K F IFK F + + + TLRS+ G+
Sbjct: 609 GNNKYFVLFIDDFTRMTWVFFMKQKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEYTS 668
Query: 776 KNMKNFCREKGITRE 820
NFC ++G+ R+
Sbjct: 669 SQFGNFCEDEGVERQ 683
Score = 29.6 bits (65), Expect(3) = 7e-13
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 516 KMPFPKVVYNRTWKLLQLIHYDLYGPM 596
+ FPK V R K+L+L+H D+ GPM
Sbjct: 577 RQSFPKGVAWRAKKVLELVHTDICGPM 603
Score = 24.3 bits (51), Expect(3) = 7e-13
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 379 ESNFLWHYRLKHINNKYLKII 441
E +LWH R H+N LK++
Sbjct: 549 EEAWLWHRRFGHLNFNSLKML 569
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 59.7 bits (143), Expect(3) = 9e-13
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLI-TLRSNNGI*LV 772
G RYFLLF +D ++M+WVY L SK FE FK F K K + K I LR++ G +
Sbjct: 449 GGSRYFLLFTNDHSRMSWVYFLQSKAETFETFKKF-KAFVEKQSGKCIKVLRTDRGGEFL 507
Query: 773 FKNMKNFCREKGITRE 820
+ K FC E+G+ RE
Sbjct: 508 SNDFKVFCEEEGLHRE 523
Score = 33.5 bits (75), Expect(3) = 9e-13
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 486 CDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPME 599
C+ K K PFPK R L++IH DL GPM+
Sbjct: 407 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 444
Score = 26.6 bits (57), Expect(3) = 9e-13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 379 ESNFLWHYRLKHINNKYLKIIQNSSNLKKIVF 474
ESN LWH R H+N K LK++ K++VF
Sbjct: 370 ESN-LWHLRYGHLNVKGLKLLSK----KEMVF 396
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 65.1 bits (157), Expect(3) = 1e-12
Identities = 31/75 (41%), Positives = 42/75 (56%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVF 775
G YF+ FIDD+T+M WVY L K EIFK F + N+ N K+ LRS+ G +
Sbjct: 457 GGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYIS 516
Query: 776 KNMKNFCREKGITRE 820
K + +C GI R+
Sbjct: 517 KEFEKYCENAGIRRQ 531
Score = 32.7 bits (73), Expect(3) = 1e-12
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Frame = +1
Query: 40 FNLKAKRSKQNRQRAHIADNN------LDSCCSSHMTPNAKLFTNLTL*STMXXXXXXXX 201
F+ K K+S++ H A +DS C++HM + LF +
Sbjct: 267 FHKKRKKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMD------------- 313
Query: 202 XXDYQKLINYGFGMNTVLHKYG-DNNIRIYFQ--NKPIGIG*VEGNIYVLEKLEETTNMC 372
Y I+ G G ++ G D + +I + N+ + +E N L ++ T M
Sbjct: 314 -SSYHAKIHMGNG--SIAQSEGKDFSCKILDRKNNRLVAKINMEKNRNFLLRMNHPTQMA 370
Query: 373 KHES---NFLWHYRLKHINNKYLKIIQNSSNLKKIVFL 477
+ LWH R+ H+N + LK+++ ++ + F+
Sbjct: 371 LRSEIDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFI 408
Score = 21.6 bits (44), Expect(3) = 1e-12
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYG 590
+ C+ K I+ FP R L+L+H D+ G
Sbjct: 413 DPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVG 449
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 65.5 bits (158), Expect(3) = 3e-12
Identities = 31/75 (41%), Positives = 42/75 (56%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVF 775
G YF+ FIDD+T+M WVY L K EIFK F + N+ N K+ LRS+ G +
Sbjct: 534 GGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYIS 593
Query: 776 KNMKNFCREKGITRE 820
K + +C GI R+
Sbjct: 594 KEFEKYCENAGIRRQ 608
Score = 31.2 bits (69), Expect(3) = 3e-12
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 47/205 (22%)
Frame = +1
Query: 4 CDMKGHDTKVCR--------FNLKAKRSKQNRQRAHIADNN------LDSCCSSHMTPNA 141
C KGH K CR F+ + ++S++ H A +DS C++HM +
Sbjct: 281 CKRKGHIAKYCRTREINRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADP 340
Query: 142 KLFTNL-------------TL*STMXXXXXXXXXXDYQKLINYGF---GMNTVLHKYG-- 267
LF + ++ + D K I + L G
Sbjct: 341 NLFREMDSSYHAKIHMGNGSIAQSEGKGTVAVQTADGPKFIKDVLLVPDLKQNLLSIGQL 400
Query: 268 -DNNIRIYFQ-----------NKPIGIG*VEGNIYVLEKLEETTNMCKHES---NFLWHY 402
++ +YF+ N+ + +E N L ++ TT M + LWH
Sbjct: 401 LEHGYAVYFEDFSCKILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSEVDISDLWHK 460
Query: 403 RLKHINNKYLKIIQNSSNLKKIVFL 477
R+ H+N + LK+++ ++ + F+
Sbjct: 461 RMGHLNYRALKLLRTKGMVQGLPFI 485
Score = 21.6 bits (44), Expect(3) = 3e-12
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYG 590
+ C+ K I+ FP R L+L+H D+ G
Sbjct: 490 DPCEGCVFGKQIRASFPHSGAWRASAPLELVHADIVG 526
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 65.1 bits (157), Expect(3) = 3e-12
Identities = 31/75 (41%), Positives = 42/75 (56%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVF 775
G YF+ FIDD+T+M WVY L K EIFK F + N+ N K+ LRS+ G +
Sbjct: 485 GGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYIS 544
Query: 776 KNMKNFCREKGITRE 820
K + +C GI R+
Sbjct: 545 KEFEKYCENAGIRRQ 559
Score = 31.6 bits (70), Expect(3) = 3e-12
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 47/205 (22%)
Frame = +1
Query: 4 CDMKGHDTKVCR--------FNLKAKRSKQNRQRAHIADNN------LDSCCSSHMTPNA 141
C KGH K CR F+ + ++S++ H A +DS C++HM +
Sbjct: 232 CKRKGHIAKYCRTREINRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADP 291
Query: 142 KLFTNL-------------TL*STMXXXXXXXXXXDYQKLINYGF---GMNTVLHKYG-- 267
LF + ++ + D K I + L G
Sbjct: 292 NLFREMDSSYHAKIHMGNGSIAQSEGKGTVAVQTADGPKFIKDVLLVPDLKQNLLSIGQL 351
Query: 268 -DNNIRIYFQ-----------NKPIGIG*VEGNIYVLEKLEETTNMCKHES---NFLWHY 402
++ +YF+ N+ + +E NI L ++ T M + LWH
Sbjct: 352 LEHGYAVYFEDFSCKILDRKNNRLVAKINMEKNINFLLRMNHPTQMALRSEIDISDLWHK 411
Query: 403 RLKHINNKYLKIIQNSSNLKKIVFL 477
R+ H+N + LK+++ ++ + F+
Sbjct: 412 RMGHLNYRALKLLRTKGMVQGLPFI 436
Score = 21.6 bits (44), Expect(3) = 3e-12
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYG 590
+ C+ K I+ FP R L+L+H D+ G
Sbjct: 441 DPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVG 477
>emb|CAN82144.1| hypothetical protein VITISV_043495 [Vitis vinifera]
Length = 567
Score = 63.9 bits (154), Expect(3) = 3e-12
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +2
Query: 593 HGRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LV 772
HG +YF+LFIDDF ++ WV+ + F IFK F + + ++TLRS+ G+
Sbjct: 201 HGNNKYFVLFIDDFXRITWVFFVKQTSKVFSIFKKFKTFVEKQSGCYIMTLRSDRGMKYT 260
Query: 773 FKNMKNFCREKGITRE 820
NFC ++G+ R+
Sbjct: 261 SSQFGNFCEDEGVERQ 276
Score = 30.0 bits (66), Expect(3) = 3e-12
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPM 596
E C+ K + F K V R K+L+LIH D+ GPM
Sbjct: 158 EICEDCXLGKHHRQSFXKGVAWRAKKVLELIHTDICGPM 196
Score = 24.3 bits (51), Expect(3) = 3e-12
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 379 ESNFLWHYRLKHINNKYLKII 441
E +LWH R H+N LK++
Sbjct: 120 EEAWLWHRRFGHLNFNRLKML 140
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 57.8 bits (138), Expect(3) = 3e-12
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLI-TLRSNNGI*LV 772
G RYFLLF DD ++M+WVY L SK FE FK F K K + K I LR++ G +
Sbjct: 500 GGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKF-KAFVEKQSGKCIKVLRTDRGGEFL 558
Query: 773 FKNMKNFCREKGITRE 820
+ K F E+G+ RE
Sbjct: 559 SNDFKVFXEEEGLHRE 574
Score = 33.5 bits (75), Expect(3) = 3e-12
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 486 CDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPME 599
C+ K K PFPK R L++IH DL GPM+
Sbjct: 458 CEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQ 495
Score = 26.6 bits (57), Expect(3) = 3e-12
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 379 ESNFLWHYRLKHINNKYLKIIQNSSNLKKIVF 474
ESN LWH R H+N K LK++ K++VF
Sbjct: 421 ESN-LWHLRYGHLNVKGLKLLSK----KEMVF 447
>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
Length = 2041
Score = 60.8 bits (146), Expect(3) = 5e-12
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +2
Query: 608 YFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVFKNMK 787
YF LFIDDF++M WVY L +K +FKSF K + + + LR++NG K
Sbjct: 1259 YFALFIDDFSRMTWVYFLKTKSQVLSMFKSFKKMVETQSGQXVKVLRTDNGGEYTSKEFS 1318
Query: 788 NFCREKGITRE 820
FC+E GI +
Sbjct: 1319 VFCQEAGIVHQ 1329
Score = 30.8 bits (68), Expect(3) = 5e-12
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPM 596
+ C+ K + PFP+ + R L+LIH D+ GPM
Sbjct: 1211 QTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPM 1249
Score = 25.4 bits (54), Expect(3) = 5e-12
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 340 LEKLEETTNMCKHESNFLWHYRLKHINNKYLKIIQNS 450
L+ +E K + + +WH R H N K L+ +Q +
Sbjct: 1161 LDLVEGHVFSAKIDESVVWHKRYXHFNLKSLRFMQEA 1197
>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
Length = 1269
Score = 61.2 bits (147), Expect(3) = 6e-12
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +2
Query: 608 YFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVFKNMK 787
YF LFIDDF++M WVY L +K +FKSF K + + + LR++NG K
Sbjct: 526 YFALFIDDFSRMTWVYFLKTKSQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFS 585
Query: 788 NFCREKGITRE 820
FC+E GI +
Sbjct: 586 VFCQEAGIVHQ 596
Score = 30.8 bits (68), Expect(3) = 6e-12
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 480 EKCDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPM 596
+ C+ K + PFP+ + R L+LIH D+ GPM
Sbjct: 478 QTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPM 516
Score = 25.0 bits (53), Expect(3) = 6e-12
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 340 LEKLEETTNMCKHESNFLWHYRLKHINNKYLKIIQNS 450
L+ +E K + + +WH R H N K L+ +Q +
Sbjct: 428 LDLVEGHVFSAKIDESVVWHKRYGHFNLKSLRFMQEA 464
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 63.2 bits (152), Expect(3) = 9e-12
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +2
Query: 596 GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCKQI*NKHNTKLITLRSNNGI*LVF 775
G RYFL+F DD+++ +WVY L K FE FK F + N+ K+ +LR++ G +
Sbjct: 520 GGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLS 579
Query: 776 KNMKNFCREKGITRE 820
+ FC E GI RE
Sbjct: 580 NDFNLFCEENGIRRE 594
Score = 27.3 bits (59), Expect(3) = 9e-12
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 292 QNK--PIGIG*VEGNIYVLEKLEETTNMCKHESNFLWHYRLKHINNKYLKII 441
QNK P+ I V + V+++ ET LWH R H+N +LK++
Sbjct: 418 QNKMFPLDISNVGNSALVVKEKNETN---------LWHLRYGHLNVNWLKLL 460
Score = 25.8 bits (55), Expect(3) = 9e-12
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 486 CDHYCRAKSIKMPFPKVVYNRTWKLLQLIHYDLYGPME 599
C+ K + FP R L+L+H DL GPM+
Sbjct: 478 CEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMK 515
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 66.6 bits (161), Expect(2) = 1e-11
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +2
Query: 533 SSVQ*NMETITVDPL*SIWPH--GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCK 706
S Q ++E I D I P G+ YFLLFIDDF++ WVY L K FEIFK F
Sbjct: 521 SRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580
Query: 707 QI*NKHNTKLITLRSNNGI*LVFKNMKNFCREKGITRE 820
+ + + T+RS+ G K +C + GI R+
Sbjct: 581 HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQ 618
Score = 30.0 bits (66), Expect(2) = 1e-11
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +1
Query: 268 DNNIRIYFQNKPI--GIG*VEGNIYVLE---KLEETTNMCKHESNFLWHYRLKHINNKYL 432
DNN+ I Q + + + ++VL + + MC E ++LWH R H+N L
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGL 480
Query: 433 KIIQNSSNLKKIVFLVRSVIIIVEPN 510
+++ +VR + I PN
Sbjct: 481 ELLSRKE-------MVRGLPCINHPN 499
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 65.5 bits (158), Expect(2) = 2e-11
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +2
Query: 533 SSVQ*NMETITVDPL*SIWPH--GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCK 706
S Q +E I D I P G+ YFLLFIDDF++ WVY L K FEIFK F
Sbjct: 521 SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580
Query: 707 QI*NKHNTKLITLRSNNGI*LVFKNMKNFCREKGITRE 820
+ + + T+RS+ G K +C + GI R+
Sbjct: 581 HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQ 618
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +1
Query: 268 DNNIRIYFQNKPI--GIG*VEGNIYVLE---KLEETTNMCKHESNFLWHYRLKHINNKYL 432
DNN+ I Q + + + ++VL + + MC E ++LWH R H+N L
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGL 480
Query: 433 KIIQNSSNLKKIVFLVRSVIIIVEPN 510
+++ +VR + I PN
Sbjct: 481 ELLSRKE-------MVRGLPCINHPN 499
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 65.5 bits (158), Expect(2) = 2e-11
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +2
Query: 533 SSVQ*NMETITVDPL*SIWPH--GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCK 706
S Q +E I D I P G+ YFLLFIDDF++ WVY L K FEIFK F
Sbjct: 521 SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580
Query: 707 QI*NKHNTKLITLRSNNGI*LVFKNMKNFCREKGITRE 820
+ + + T+RS+ G K +C + GI R+
Sbjct: 581 HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQ 618
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +1
Query: 268 DNNIRIYFQNKPI--GIG*VEGNIYVLE---KLEETTNMCKHESNFLWHYRLKHINNKYL 432
DNN+ I Q + + + ++VL + + MC E ++LWH R H+N L
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGL 480
Query: 433 KIIQNSSNLKKIVFLVRSVIIIVEPN 510
+++ +VR + I PN
Sbjct: 481 ELLSRKE-------MVRGLPCINHPN 499
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 65.5 bits (158), Expect(2) = 2e-11
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +2
Query: 533 SSVQ*NMETITVDPL*SIWPH--GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCK 706
S Q +E I D I P G+ YFLLFIDDF++ WVY L K FEIFK F
Sbjct: 521 SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580
Query: 707 QI*NKHNTKLITLRSNNGI*LVFKNMKNFCREKGITRE 820
+ + + T+RS+ G K +C + GI R+
Sbjct: 581 HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQ 618
Score = 30.0 bits (66), Expect(2) = 2e-11
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +1
Query: 268 DNNIRIYFQNKPI--GIG*VEGNIYVLE---KLEETTNMCKHESNFLWHYRLKHINNKYL 432
DNN+ I Q + + + ++VL + + MC E ++LWH R H+N L
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGL 480
Query: 433 KIIQNSSNLKKIVFLVRSVIIIVEPN 510
+++ +VR + I PN
Sbjct: 481 ELLSRKE-------MVRGLPCINHPN 499
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1272
Score = 65.9 bits (159), Expect(2) = 2e-11
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +2
Query: 533 SSVQ*NMETITVDPL*SIWPH--GRQRYFLLFIDDFTKMNWVYLLHSKDPFFEIFKSFCK 706
S Q +E I D I P G+ YFLLFIDDF++ WVY L K FEIFK F
Sbjct: 521 SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580
Query: 707 QI*NKHNTKLITLRSNNGI*LVFKNMKNFCREKGITRE 820
+ + + T+RS++G K +C + GI R+
Sbjct: 581 HVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQ 618
Score = 29.6 bits (65), Expect(2) = 2e-11
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 349 LEETTNMCKHESNFLWHYRLKHINNKYLKIIQNSSNLKKIVFLVRSVIIIVEPN 510
+ + MC E ++LWH R H+N L+++ +VR + I PN
Sbjct: 453 IAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKE-------MVRGLPCINHPN 499