BLASTX nr result
ID: Ephedra25_contig00022549
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra25_contig00022549 (798 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae... 424 e-116 gb|AAW22900.1| RNA polymerase II second largest subunit [Microcy... 423 e-116 gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon e... 423 e-116 gb|AAW22901.1| RNA polymerase II second largest subunit [Stanger... 422 e-116 gb|AAW22905.1| RNA polymerase II second largest subunit [Welwits... 422 e-116 gb|AAW22910.1| RNA polymerase II second largest subunit [Saxegot... 422 e-116 gb|AAW22909.1| RNA polymerase II second largest subunit [Podocar... 422 e-116 gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalo... 422 e-116 gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus b... 422 e-116 gb|AAW22898.1| RNA polymerase II second largest subunit [Encepha... 421 e-115 gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydi... 421 e-115 gb|AAW22914.1| RNA polymerase II second largest subunit [Cunning... 421 e-115 gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia i... 421 e-115 gb|AAS86818.1| RNA polymerase II second largest subunit, partial... 421 e-115 gb|AAS86819.1| RNA polymerase II second largest subunit, partial... 421 e-115 gb|AAS86816.1| RNA polymerase II second largest subunit, partial... 420 e-115 gb|AAS86830.1| RPB140, partial [Liquidambar acalycina] 420 e-115 gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum ... 420 e-115 gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu... 420 e-115 gb|AAS86825.1| RNA polymerase II second largest subunit, partial... 420 e-115 >gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata] Length = 555 Score = 424 bits (1089), Expect = e-116 Identities = 209/271 (77%), Positives = 238/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 248 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 307 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 308 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 366 Query: 441 KTSSLDGKE----AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KTS + + A RYTRRD ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 367 KTSPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 426 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTYCQEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 427 IGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 486 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 487 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 517 >gb|AAW22900.1| RNA polymerase II second largest subunit [Microcycas calocoma] Length = 545 Score = 423 bits (1088), Expect = e-116 Identities = 208/271 (76%), Positives = 239/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 245 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 304 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 +YRSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 305 FYRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 363 Query: 441 KTSSL----DGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + G +A RYT+RD+ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 364 KTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 423 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTYCQEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 424 IGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 483 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 484 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 514 >gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon edule] Length = 538 Score = 423 bits (1088), Expect = e-116 Identities = 208/271 (76%), Positives = 239/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 231 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 290 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 +YRSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 291 FYRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 349 Query: 441 KTSSL----DGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + G +A RYT+RD+ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 350 KTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 409 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTYCQEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 410 IGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 469 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 470 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 500 >gb|AAW22901.1| RNA polymerase II second largest subunit [Stangeria eriopus] Length = 538 Score = 422 bits (1086), Expect = e-116 Identities = 206/271 (76%), Positives = 240/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAI+CYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 231 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSL 290 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 +YRSYR EEK +G +KE FG P+ ++T+GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 291 FYRSYRDEEKRMGTLIKEEFGRPNRENTIGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 349 Query: 441 KTSSL----DGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + G +A RYT+RD+ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 350 KTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 409 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTYCQEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 410 IGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 469 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 470 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 500 >gb|AAW22905.1| RNA polymerase II second largest subunit [Welwitschia mirabilis] Length = 553 Score = 422 bits (1085), Expect = e-116 Identities = 206/269 (76%), Positives = 237/269 (88%), Gaps = 3/269 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 248 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 307 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P +T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 308 FFRSYRDEEKRMGTLVKEEFGRPSRDNTAGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 366 Query: 441 KTS--SLDGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQIG 268 KT+ + D GRYTRRD+ST+++HSE GMVDQVLLTTNQDGLR +++R+R+VRIPQIG Sbjct: 367 KTTPTNQDENAGGRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIG 426 Query: 267 DKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVSAH 88 DKFSSRHGQKGTVGMTYCQEDMP+T++GITP+IIVNPHAIPSRMTIGQLIECIMGKV+AH Sbjct: 427 DKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 486 Query: 87 TGKEADATPFTSVTVDSIGKALHGCGYQM 1 GKE DATPFT VTVD+I KALH CGYQM Sbjct: 487 MGKEGDATPFTDVTVDNISKALHKCGYQM 515 >gb|AAW22910.1| RNA polymerase II second largest subunit [Saxegothaea conspicua] Length = 526 Score = 422 bits (1084), Expect = e-116 Identities = 208/271 (76%), Positives = 240/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 219 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 278 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 279 FFRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 337 Query: 441 KTSSLDGKEAG----RYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + +E+G +YTRRD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VRIPQ Sbjct: 338 KTTPVSQEESGNQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 397 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 398 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 457 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI KALH CGYQM Sbjct: 458 AHMGKEGDATPFTDVTVDSISKALHKCGYQM 488 >gb|AAW22909.1| RNA polymerase II second largest subunit [Podocarpus coriaceus] Length = 514 Score = 422 bits (1084), Expect = e-116 Identities = 208/271 (76%), Positives = 240/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 216 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 275 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 276 FFRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 334 Query: 441 KTSSLDGKEAG----RYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + +E+G +YTRRD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VRIPQ Sbjct: 335 KTTPVSQEESGNQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 394 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 395 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 454 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI KALH CGYQM Sbjct: 455 AHMGKEGDATPFTDVTVDSISKALHKCGYQM 485 >gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalotaxus fortunei] Length = 533 Score = 422 bits (1084), Expect = e-116 Identities = 208/271 (76%), Positives = 240/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 227 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 286 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 287 FFRSYRDEEKRMGTLVKEEFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 345 Query: 441 KTSSLDGKEAG----RYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + E+G +YT+RD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VRIPQ Sbjct: 346 KTTPIAQDESGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 405 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 406 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 465 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI KALH CGYQM Sbjct: 466 AHMGKEGDATPFTDVTVDSISKALHKCGYQM 496 >gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus brevifolia] Length = 549 Score = 422 bits (1084), Expect = e-116 Identities = 208/271 (76%), Positives = 240/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAI+CYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 224 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSL 283 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 284 FFRSYRDEEKRMGTLVKEEFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 342 Query: 441 KTSSLDGKEAG----RYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + EAG +YT+RD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VRIPQ Sbjct: 343 KTTPIAQDEAGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 402 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 403 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 462 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI KALH CGYQM Sbjct: 463 AHMGKEGDATPFTDVTVDSISKALHKCGYQM 493 >gb|AAW22898.1| RNA polymerase II second largest subunit [Encephalartos barteri] Length = 527 Score = 421 bits (1083), Expect = e-115 Identities = 207/271 (76%), Positives = 238/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPL TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 229 VLYYPQKPLXTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 288 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 +YRSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 289 FYRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 347 Query: 441 KTSSL----DGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + G +A RYT+RD+ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 348 KTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 407 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTYCQEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 408 IGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 467 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 468 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 498 >gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum] Length = 498 Score = 421 bits (1083), Expect = e-115 Identities = 207/271 (76%), Positives = 240/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 203 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 262 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 263 FFRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 321 Query: 441 KTSSLDGKEAG----RYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + +E+G +YTRRD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VR+PQ Sbjct: 322 KTTPVSQEESGNQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRVPQ 381 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 382 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 441 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI KALH CGYQM Sbjct: 442 AHMGKEGDATPFTDVTVDSISKALHKCGYQM 472 >gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata] Length = 550 Score = 421 bits (1083), Expect = e-115 Identities = 207/271 (76%), Positives = 239/271 (88%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 225 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 284 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 285 FFRSYRDEEKRMGTLVKEEFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 343 Query: 441 KTSSL----DGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + G + +YT+RD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VRIPQ Sbjct: 344 KTTPIAQDDSGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 403 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 404 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 463 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI KALH CGYQM Sbjct: 464 AHMGKEGDATPFTDVTVDSISKALHKCGYQM 494 >gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia integrifolia] Length = 556 Score = 421 bits (1082), Expect = e-115 Identities = 207/271 (76%), Positives = 238/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 258 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 317 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 +YRSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 318 FYRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 376 Query: 441 KTSSL----DGKEAGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + G +A RYT+RD+ST+L+HS GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 377 KTTPVTQDESGGQAARYTKRDQSTSLRHSXSGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 436 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTYCQEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 437 IGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 496 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 497 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 527 >gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon] Length = 546 Score = 421 bits (1082), Expect = e-115 Identities = 205/269 (76%), Positives = 238/269 (88%), Gaps = 3/269 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 241 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 300 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G +KE FG P +T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 301 FFRSYRDEEKRMGTLIKEEFGRPSRDNTSGMR-HGSYDKLDDDGLAPPGTRVSGEDIIIG 359 Query: 441 KTSSLDGKE--AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQIG 268 KT+ ++ E G++TRRD+ST+L+HSE GMVDQVLLTTNQDGLR ++VR+R+VRIPQIG Sbjct: 360 KTTPINQDENAGGKFTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIG 419 Query: 267 DKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVSAH 88 DKFSSRHGQKGTVGMTYCQEDMP+T++GITP+IIVNPHAIPSRMTIGQLIECIMGKV+AH Sbjct: 420 DKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 479 Query: 87 TGKEADATPFTSVTVDSIGKALHGCGYQM 1 GKE DATPFT VTVD+I KALH CGYQM Sbjct: 480 MGKEGDATPFTDVTVDNISKALHKCGYQM 508 >gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea sansibarensis] Length = 572 Score = 421 bits (1081), Expect = e-115 Identities = 209/271 (77%), Positives = 237/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 240 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 300 FFRSYRDEEKKMGTLVKEDFGKPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 358 Query: 441 KTSSLDGKE----AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KTS + E A RYTRRD ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 359 KTSPIPQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 418 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 419 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 478 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 479 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 509 >gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta] Length = 567 Score = 420 bits (1080), Expect = e-115 Identities = 208/271 (76%), Positives = 238/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 242 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 301 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 +YRSYR EEK +G VKE FG P+ ++T GM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 302 FYRSYRDEEKRMGTLVKEEFGRPNRENTTGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 360 Query: 441 KTSSLDGKEAG----RYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + EAG RYT+RD+ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 361 KTTPITQDEAGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 420 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 511 >gb|AAS86830.1| RPB140, partial [Liquidambar acalycina] Length = 540 Score = 420 bits (1080), Expect = e-115 Identities = 209/271 (77%), Positives = 236/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS++DRGFFRSL Sbjct: 242 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSL 301 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ DTMGM +G YEKL+ DG+ PPGT++ GED IIG Sbjct: 302 FFRSYRDEEKKMGTLVKEDFGRPNRADTMGMR-HGSYEKLDDDGLAPPGTRVSGEDVIIG 360 Query: 441 KTSSLDGKE----AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + E A RYTRRD ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 361 KTTPIAQDESQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 421 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 481 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 511 >gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum] Length = 565 Score = 420 bits (1079), Expect = e-115 Identities = 208/271 (76%), Positives = 237/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 240 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 300 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 358 Query: 441 KTSSLDGKE----AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + E A RYTRRD STAL+HSE GMVDQVLLTTN DGLR ++VR+R+VR+PQ Sbjct: 359 KTTPIAQDESQGQASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQ 418 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 419 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 478 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVDSI +ALH CGYQM Sbjct: 479 AHMGKEGDATPFTDVTVDSISRALHKCGYQM 509 >gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis] Length = 923 Score = 420 bits (1079), Expect = e-115 Identities = 208/271 (76%), Positives = 238/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 625 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 684 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 685 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 743 Query: 441 KTSSLDGKE----AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + +E A RYTRRD ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 744 KTTPIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 803 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 804 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 863 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 864 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 894 >gb|AAS86825.1| RNA polymerase II second largest subunit, partial [Platanus orientalis] Length = 536 Score = 420 bits (1079), Expect = e-115 Identities = 208/271 (76%), Positives = 238/271 (87%), Gaps = 5/271 (1%) Frame = -1 Query: 798 VLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFRSL 619 VL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFRSL Sbjct: 238 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 297 Query: 618 YYRSYRGEEK-VGQRVKETFGLPHLKDTMGMNLNGGYEKLEKDGIVPPGTKLVGEDYIIG 442 ++RSYR EEK +G VKE FG P+ ++TMGM +G Y+KL+ DG+ PPGT++ GED IIG Sbjct: 298 FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIG 356 Query: 441 KTSSLDGKE----AGRYTRRDRSTALKHSEKGMVDQVLLTTNQDGLRSIRVRLRNVRIPQ 274 KT+ + +E A RYTRRD ST+L+HSE GMVDQVLLTTN DGLR ++VR+R+VRIPQ Sbjct: 357 KTTPIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 416 Query: 273 IGDKFSSRHGQKGTVGMTYCQEDMPFTVQGITPEIIVNPHAIPSRMTIGQLIECIMGKVS 94 IGDKFSSRHGQKGTVGMTY QEDMP+TV+GITP+IIVNPHAIPSRMTIGQLIECIMGKV+ Sbjct: 417 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 476 Query: 93 AHTGKEADATPFTSVTVDSIGKALHGCGYQM 1 AH GKE DATPFT VTVD+I KALH CGYQM Sbjct: 477 AHMGKEGDATPFTDVTVDNISKALHKCGYQM 507