BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00021818
         (1114 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE76416.1| unknown [Picea sitchensis]                             315   3e-83
dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japo...   270   6e-70
gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indi...   270   6e-70
gb|EMT12212.1| Protein kinase APK1B, chloroplastic [Aegilops tau...   266   1e-68
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   265   3e-68
ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [A...   264   4e-68
ref|XP_006656336.1| PREDICTED: tRNA pseudouridine synthase A, mi...   260   6e-67
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   260   8e-67
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   260   8e-67
gb|AFK45334.1| unknown [Medicago truncatula]                          260   8e-67
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           260   8e-67
ref|XP_004965639.1| PREDICTED: uncharacterized protein LOC101778...   259   2e-66
gb|EOY32188.1| Pseudouridine synthase isoform 3 [Theobroma cacao]     258   2e-66
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     258   2e-66
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     258   3e-66
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   258   3e-66
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   258   4e-66
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   258   4e-66
ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [S...   258   4e-66
ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-lik...   257   5e-66

>gb|ADE76416.1| unknown [Picea sitchensis]
          Length = 448

 Score =  315 bits (806), Expect = 3e-83
 Identities = 167/287 (58%), Positives = 200/287 (69%), Gaps = 21/287 (7%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            KK +ELEAK   +EAA++VAGRTDKGVSA  QVCSFYTWRKD +  ++E+EINA A   L
Sbjct: 164  KKAQELEAKKASVEAAVAVAGRTDKGVSAFQQVCSFYTWRKDTSLEDIESEINAAALGKL 223

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEG-------------DGMC--------N 297
            KV S+ EV REFHPNFSAKWRRYLYILPL +GEG             D +C        +
Sbjct: 224  KVVSISEVSREFHPNFSAKWRRYLYILPLKDGEGNKTVVDGGSPVTYDSLCLADEGGNQS 283

Query: 298  STKEILKMEKVSATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSS 477
            +   ++ ME ++ +A  +++   KP+NF+V  VNQ LQQLEG+SLSY+IFARDTQASRS 
Sbjct: 284  TDMNVINMEAMNISATGKHQASVKPHNFNVDTVNQLLQQLEGQSLSYRIFARDTQASRSR 343

Query: 478  GPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXX 657
            GPATEC M+HARAAVATLP +G+    + + VMCVELVANRFLRKM              
Sbjct: 344  GPATECFMHHARAAVATLPYMGQDHTSKGRTVMCVELVANRFLRKMVRVLVATAVREAAA 403

Query: 658  XXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSIFLI 798
               P+  L LM ATCRRASAPPAPP+GLCLVD+GY DIN EN  FLI
Sbjct: 404  GATPDNLLKLMHATCRRASAPPAPPEGLCLVDIGYTDINQEN--FLI 448


>dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
          Length = 495

 Score =  270 bits (691), Expect = 6e-70
 Identities = 142/260 (54%), Positives = 175/260 (67%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK K+LEA+ +P+E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L
Sbjct: 161 KKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESEYKQ 360
           +   V +V REFHPNF+AKWRRYLYI PL E          K I   E+ + T E     
Sbjct: 221 RPLHVSQVSREFHPNFAAKWRRYLYIFPLDE--------DVKLISGEEQSAKTVEGPECN 272

Query: 361 LNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 540
           + KP +FDV  V++ ++QLEG+SLSYK+FARDTQASRS GP TEC M+H+RAAVA L   
Sbjct: 273 I-KPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTA 331

Query: 541 GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRASAP 720
            ++    T   +C+ELVANRFLRKM                + +  LNLMEATCRRA+AP
Sbjct: 332 DENCEEGTTRAICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAP 391

Query: 721 PAPPDGLCLVDVGYEDINNE 780
           PAPPDGLCLVDVGYED N +
Sbjct: 392 PAPPDGLCLVDVGYEDFNRQ 411


>gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group]
           gi|125598125|gb|EAZ37905.1| hypothetical protein
           OsJ_22255 [Oryza sativa Japonica Group]
          Length = 417

 Score =  270 bits (691), Expect = 6e-70
 Identities = 142/260 (54%), Positives = 175/260 (67%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK K+LEA+ +P+E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L
Sbjct: 161 KKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESEYKQ 360
           +   V +V REFHPNF+AKWRRYLYI PL E          K I   E+ + T E     
Sbjct: 221 RPLHVSQVSREFHPNFAAKWRRYLYIFPLDE--------DVKLISGEEQSAKTVEGPECN 272

Query: 361 LNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 540
           + KP +FDV  V++ ++QLEG+SLSYK+FARDTQASRS GP TEC M+H+RAAVA L   
Sbjct: 273 I-KPQSFDVGKVDKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTA 331

Query: 541 GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRASAP 720
            ++    T   +C+ELVANRFLRKM                + +  LNLMEATCRRA+AP
Sbjct: 332 DENCEEGTTRAICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAP 391

Query: 721 PAPPDGLCLVDVGYEDINNE 780
           PAPPDGLCLVDVGYED N +
Sbjct: 392 PAPPDGLCLVDVGYEDFNRQ 411


>gb|EMT12212.1| Protein kinase APK1B, chloroplastic [Aegilops tauschii]
          Length = 914

 Score =  266 bits (679), Expect = 1e-68
 Identities = 147/267 (55%), Positives = 180/267 (67%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            +K K+L+ + +PIE   +VAGRTDKGV+AL QVCSFYTWRKDV   +++  IN  A + +
Sbjct: 660  RKAKQLQERSLPIEGCATVAGRTDKGVTALQQVCSFYTWRKDVQPGDIKDTINEAAPDKI 719

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESEYKQ 360
            K   V EV REFHPNFSAKWRRYLYI PL     DG   S  E    ++ S+T   E  +
Sbjct: 720  KSLVVSEVSREFHPNFSAKWRRYLYIFPL-----DGDATSISE----DEQSSTI-LENPE 769

Query: 361  LNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 540
            L  P +FDVA V++ ++QLEG+ LSYKIFARDTQASRS GPATEC MYH+RAAV  L   
Sbjct: 770  LKAPQSFDVAKVDKIIRQLEGKMLSYKIFARDTQASRSDGPATECFMYHSRAAVTKLYSA 829

Query: 541  GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRASAP 720
             ++    T  VMCVELVANRFLRKM                D +  LNLM+ATCRRA+AP
Sbjct: 830  DENCKEGT-TVMCVELVANRFLRKMVRVLVATTIREAAAGADEDALLNLMDATCRRATAP 888

Query: 721  PAPPDGLCLVDVGYEDINNENSIFLIN 801
            PAP +GLCLVDVGYED  +E   F+++
Sbjct: 889  PAPAEGLCLVDVGYEDF-DEQRCFIVD 914


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
           gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase
           A [Medicago truncatula]
          Length = 400

 Score =  265 bits (676), Expect = 3e-68
 Identities = 140/268 (52%), Positives = 175/268 (65%), Gaps = 4/268 (1%)
 Frame = +1

Query: 4   KVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLK 183
           K + L+ KG+PI+   +VAGRTDKGV+AL QVCSFYTW+KD+   E+E  IN  A   L+
Sbjct: 134 KTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLR 193

Query: 184 VASVYEVPREFHPNFSAKWRRYLYILPLHEG----EGDGMCNSTKEILKMEKVSATAESE 351
           V SVYEV R FHPNFSAKWRRYLYI PL +G    +  G   S    +  E   + ++ E
Sbjct: 194 VVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNEICDSDSKDE 253

Query: 352 YKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATL 531
            ++ NK Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC ++HARA  A L
Sbjct: 254 LEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKL 313

Query: 532 PCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRA 711
           P     +G  T+ VMC+ELVANRFLRKM                + +  L LM+ATCRRA
Sbjct: 314 PI--TENGEETR-VMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRA 370

Query: 712 SAPPAPPDGLCLVDVGYEDINNENSIFL 795
           +APPAPPDGLCLVDVGY +   E    +
Sbjct: 371 TAPPAPPDGLCLVDVGYAEFEREKCFIM 398


>ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [Amborella trichopoda]
           gi|548854646|gb|ERN12556.1| hypothetical protein
           AMTR_s00025p00208060 [Amborella trichopoda]
          Length = 371

 Score =  264 bits (675), Expect = 4e-68
 Identities = 144/279 (51%), Positives = 174/279 (62%), Gaps = 17/279 (6%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK ++L  K +P+E   +VAGRTDKGVSAL QVCSFYTWR DV   E+E  IN +A   L
Sbjct: 91  KKAQQLRDKSLPVEGCATVAGRTDKGVSALQQVCSFYTWRTDVKTQEIEHAINTVAPGQL 150

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPL----------HEGEGDGMCNSTKEILK---- 318
           +   V EV R FHPNFSAKWR YLYI PL          + G G   CN+  E  K    
Sbjct: 151 RAVYVSEVSRAFHPNFSAKWRHYLYIFPLKVEEESLGLENIGGGFIQCNNHDEERKEWVE 210

Query: 319 ---MEKVSATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPAT 489
                  S   + +Y + +KP  F V+ V++ L+QLEGR LSYK+FARDT++SR+ GP T
Sbjct: 211 NGLENGCSIMVDEDYLERSKPMRFSVSKVDRILRQLEGRLLSYKMFARDTKSSRNEGPPT 270

Query: 490 ECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDP 669
           EC +YHARAA   LPC  + DG+    VMCVELVANRFLRKM                  
Sbjct: 271 ECFLYHARAAETRLPCPDEVDGNGL-GVMCVELVANRFLRKMVRVLVATSIREAAAGAGD 329

Query: 670 NIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENS 786
           ++ L LM+ATCRRA+APPAPPDGLCLVDVGYED    N+
Sbjct: 330 DVLLRLMDATCRRATAPPAPPDGLCLVDVGYEDFKPGNT 368


>ref|XP_006656336.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Oryza
           brachyantha]
          Length = 364

 Score =  260 bits (665), Expect = 6e-67
 Identities = 142/263 (53%), Positives = 177/263 (67%), Gaps = 3/263 (1%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN    + L
Sbjct: 109 KKAKQLEARSLPIEGCAIVAGRTDKGVTALQQVCSFYTWRKDVKSRDIKDAINKATPDKL 168

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAE-SEYK 357
           ++  V EV REFHPNF+AKWRRYLYI PL E          K I   E+ S   E SEY 
Sbjct: 169 RLLHVSEVSREFHPNFAAKWRRYLYIFPLDE--------DAKPISGEEQPSKILEGSEYN 220

Query: 358 QLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATLPC 537
              KP +F+V  V++ ++QLEG+SLSYK+FARDTQASRS GP TEC M+H+RA+V  L  
Sbjct: 221 --IKPQSFNVVKVDKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRASVVKLHS 278

Query: 538 IGKH--DGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRA 711
             ++  +G R    +C+ELVANRFLRKM                + +  LNLMEATCRRA
Sbjct: 279 ADENCEEGMR---AICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRA 335

Query: 712 SAPPAPPDGLCLVDVGYEDINNE 780
           +APPAPP+GLCLVDVGY+D N +
Sbjct: 336 TAPPAPPEGLCLVDVGYDDFNRQ 358


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  260 bits (664), Expect = 8e-67
 Identities = 146/285 (51%), Positives = 175/285 (61%), Gaps = 22/285 (7%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   +
Sbjct: 174  KKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKV 233

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG-------------MCNST 303
            +V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G               N  
Sbjct: 234  RVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNEC 293

Query: 304  KEILKMEKVS---ATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRS 474
             E+   E V     + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+
Sbjct: 294  GELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRN 353

Query: 475  SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 654
             GP TEC +YHARA    LP      G R   VMCVEL+ANRFLRKM             
Sbjct: 354  VGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAA 410

Query: 655  XXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
                 +  L LM+ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 411  AGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 455


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  260 bits (664), Expect = 8e-67
 Identities = 146/285 (51%), Positives = 175/285 (61%), Gaps = 22/285 (7%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   +
Sbjct: 165  KKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKV 224

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG-------------MCNST 303
            +V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G               N  
Sbjct: 225  RVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNEC 284

Query: 304  KEILKMEKVS---ATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRS 474
             E+   E V     + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+
Sbjct: 285  GELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRN 344

Query: 475  SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 654
             GP TEC +YHARA    LP      G R   VMCVEL+ANRFLRKM             
Sbjct: 345  VGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAA 401

Query: 655  XXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
                 +  L LM+ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 402  AGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 446


>gb|AFK45334.1| unknown [Medicago truncatula]
          Length = 400

 Score =  260 bits (664), Expect = 8e-67
 Identities = 139/268 (51%), Positives = 174/268 (64%), Gaps = 4/268 (1%)
 Frame = +1

Query: 4   KVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLK 183
           K + L+ KG+PI+   +VAGRTDKGV+AL QVCSFYTW+KD+   E+E  IN  A   L+
Sbjct: 134 KTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLR 193

Query: 184 VASVYEVPREFHPNFSAKWRRYLYILPLHEG----EGDGMCNSTKEILKMEKVSATAESE 351
           V SVYEV R FHPNFSAKWRRYLYI PL +G    +  G   S    +  E   + ++ E
Sbjct: 194 VVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNEICDSDSKDE 253

Query: 352 YKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATL 531
            ++ NK Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC ++HARA  A L
Sbjct: 254 LEKENKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKL 313

Query: 532 PCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRA 711
           P     +G  T+ VMC+ELVANRFLRKM                + +  L LM+ATCRRA
Sbjct: 314 PI--TENGEETR-VMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRA 370

Query: 712 SAPPAPPDGLCLVDVGYEDINNENSIFL 795
           +APPAPPDGL LVDVGY +   E    +
Sbjct: 371 TAPPAPPDGLGLVDVGYAEFEREKCFIM 398


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  260 bits (664), Expect = 8e-67
 Identities = 146/285 (51%), Positives = 175/285 (61%), Gaps = 22/285 (7%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK ++L+ +  P+E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   +
Sbjct: 145 KKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKV 204

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEG------EGDG-------------MCNST 303
           +V S+ EV R FHPNFSAKWRRYLYI PL++G      EG+G               N  
Sbjct: 205 RVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNEC 264

Query: 304 KEILKMEKVS---ATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRS 474
            E+   E V     + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+
Sbjct: 265 GELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRN 324

Query: 475 SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 654
            GP TEC +YHARA    LP      G R   VMCVEL+ANRFLRKM             
Sbjct: 325 VGPPTECFLYHARATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAA 381

Query: 655 XXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
                +  L LM+ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 382 AGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 426


>ref|XP_004965639.1| PREDICTED: uncharacterized protein LOC101778125 [Setaria italica]
          Length = 422

 Score =  259 bits (661), Expect = 2e-66
 Identities = 140/260 (53%), Positives = 173/260 (66%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           +K K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + +++  I   A + L
Sbjct: 168 RKAKQLEARSLPIEGGAIVAGRTDKGVTALQQVCSFYTWRKDVKSEDIKDAIKEAAPDKL 227

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESEYKQ 360
           K   V EV REFHPNF+AKWRRY+YI PL E     +     E+LK         SE+  
Sbjct: 228 KPLHVSEVAREFHPNFAAKWRRYMYIFPLDEDAKSIIGEGHSEVLK--------NSEH-- 277

Query: 361 LNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 540
           + KP +FDVA V++ L++L G++LSYK+FARDTQASRS GP TEC M+H+RAA A L C 
Sbjct: 278 IIKPQSFDVAKVDEILRKLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAAAKLYC- 336

Query: 541 GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRASAP 720
              D     +VMCVELVANRFLRKM                  +  LNLMEAT RRA+AP
Sbjct: 337 ANEDYKEGLSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLNLMEATDRRATAP 396

Query: 721 PAPPDGLCLVDVGYEDINNE 780
           PAPP+GLCLVDVGY+D + +
Sbjct: 397 PAPPEGLCLVDVGYKDFSKQ 416


>gb|EOY32188.1| Pseudouridine synthase isoform 3 [Theobroma cacao]
          Length = 303

 Score =  258 bits (660), Expect = 2e-66
 Identities = 146/286 (51%), Positives = 175/286 (61%), Gaps = 23/286 (8%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK + L+ K  P+E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L
Sbjct: 19  KKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKL 78

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGM-CNSTKEI--------------- 312
           +V SV EV R FHPNFSAKWR YLYI PL   E +   C + KE+               
Sbjct: 79  RVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNG 138

Query: 313 ----LKMEKVSATAESEYKQL---NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASR 471
               ++ E V     S+   L   NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR
Sbjct: 139 YLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASR 198

Query: 472 SSGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXX 651
           + GP TEC MYHARAA A +PC    +G   + VMCVELVANRFLRKM            
Sbjct: 199 NIGPPTECFMYHARAAEARIPCSDHGEG---REVMCVELVANRFLRKMVRVLVATSIREA 255

Query: 652 XXXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
               + +  L LM ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 256 AAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 301


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  258 bits (660), Expect = 2e-66
 Identities = 146/286 (51%), Positives = 175/286 (61%), Gaps = 23/286 (8%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            KK + L+ K  P+E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L
Sbjct: 160  KKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKL 219

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGM-CNSTKEI--------------- 312
            +V SV EV R FHPNFSAKWR YLYI PL   E +   C + KE+               
Sbjct: 220  RVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNG 279

Query: 313  ----LKMEKVSATAESEYKQL---NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASR 471
                ++ E V     S+   L   NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR
Sbjct: 280  YLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASR 339

Query: 472  SSGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXX 651
            + GP TEC MYHARAA A +PC    +G   + VMCVELVANRFLRKM            
Sbjct: 340  NIGPPTECFMYHARAAEARIPCSDHGEG---REVMCVELVANRFLRKMVRVLVATSIREA 396

Query: 652  XXXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
                + +  L LM ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 397  AAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 442


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  258 bits (659), Expect = 3e-66
 Identities = 146/286 (51%), Positives = 175/286 (61%), Gaps = 23/286 (8%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            KK + L+ K  P+E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L
Sbjct: 160  KKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKL 219

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGM-CNSTKEI--------------- 312
            +V SV EV R FHPNFSAKWR YLYI PL   E +   C + KE+               
Sbjct: 220  RVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNG 279

Query: 313  ----LKMEKVSATAESEYKQL---NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASR 471
                ++ E V     S+   L   NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR
Sbjct: 280  YLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASR 339

Query: 472  SSGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXX 651
            + GP TEC MYHARAA A +PC   +D    + VMCVELVANRFLRKM            
Sbjct: 340  NIGPPTECFMYHARAAEARIPC-SVNDHGEGREVMCVELVANRFLRKMVRVLVATSIREA 398

Query: 652  XXXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
                + +  L LM ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 399  AAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 444


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 443

 Score =  258 bits (659), Expect = 3e-66
 Identities = 144/280 (51%), Positives = 171/280 (61%), Gaps = 22/280 (7%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           KK ++L+    P+E    VAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN+ A   +
Sbjct: 160 KKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINSSAPGKI 219

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEG-------------------DGMCNST 303
           +V SV EV R FHPNFSAKWRRYLYI P+++GE                    D   N  
Sbjct: 220 RVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYDEQRNGC 279

Query: 304 KEILKMEKVSATAESEYKQL---NKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRS 474
            E+   E V     S+  +L    KP  F +  VNQ LQQLEG+ LSYKIFARDT+ASR+
Sbjct: 280 AELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFARDTKASRN 339

Query: 475 SGPATECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXX 654
            GP TEC +YHARA  A LPC    +G   + VMCVELVANRFLRKM             
Sbjct: 340 VGPPTECFIYHARATEARLPCPDHGEG---RKVMCVELVANRFLRKMVRVLVATSIREAA 396

Query: 655 XXXDPNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDIN 774
              + +  L LM+A+CRRASAPPAPPDGLCL DVGY + +
Sbjct: 397 AGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFD 436


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  258 bits (658), Expect = 4e-66
 Identities = 143/281 (50%), Positives = 175/281 (62%), Gaps = 18/281 (6%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            K+ K L+ K  P+E    VAGRTDKGV+AL QVCSFYTWRKDV   E+E  IN+ A   +
Sbjct: 173  KRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKPSEIEDAINSAAPGKI 232

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGE-GDGMCNSTKEI--------------- 312
            +V SV +V R FHPNFSAKWRRYLYI PL++GE  +   +S  E+               
Sbjct: 233  RVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSIDSEVEVENFHTSNNVGKQSNG 292

Query: 313  --LKMEKVSATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPA 486
                +E +    E  +    KP NF +  VN  LQ+LEG+ LSYK FARDT+ASR+ GP 
Sbjct: 293  CYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPP 352

Query: 487  TECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXD 666
            TEC +YHARA  ATLPC     G   K VMCVELVANRFLRKM                D
Sbjct: 353  TECFIYHARATEATLPCPVNDHGEGRK-VMCVELVANRFLRKMVRVLVATLVREAAAGAD 411

Query: 667  PNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
             +  L L++ATCRRA+APPAPP+GLCLVDVGY + + +NS+
Sbjct: 412  EDALLKLVDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSL 452


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
            gi|557556408|gb|ESR66422.1| hypothetical protein
            CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  258 bits (658), Expect = 4e-66
 Identities = 143/281 (50%), Positives = 175/281 (62%), Gaps = 18/281 (6%)
 Frame = +1

Query: 1    KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
            K+ K L+ K  P+E    VAGRTDKGV+AL QVCSFYTWRKDV   E+E  IN+ A   +
Sbjct: 166  KRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKPSEIEDAINSAAPGKI 225

Query: 181  KVASVYEVPREFHPNFSAKWRRYLYILPLHEGE-GDGMCNSTKEI--------------- 312
            +V SV +V R FHPNFSAKWRRYLYI PL++GE  +   +S  E+               
Sbjct: 226  RVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSIDSEVEVENFHTSNNVGKQSNG 285

Query: 313  --LKMEKVSATAESEYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPA 486
                +E +    E  +    KP NF +  VN  LQ+LEG+ LSYK FARDT+ASR+ GP 
Sbjct: 286  CYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPP 345

Query: 487  TECTMYHARAAVATLPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXD 666
            TEC +YHARA  ATLPC     G   K VMCVELVANRFLRKM                D
Sbjct: 346  TECFIYHARATEATLPCPVNDHGEGRK-VMCVELVANRFLRKMVRVLVATLVREAAAGAD 404

Query: 667  PNIFLNLMEATCRRASAPPAPPDGLCLVDVGYEDINNENSI 789
             +  L L++ATCRRA+APPAPP+GLCLVDVGY + + +NS+
Sbjct: 405  EDALLKLVDATCRRATAPPAPPEGLCLVDVGYTNFDPQNSL 445


>ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor]
           gi|241917024|gb|EER90168.1| hypothetical protein
           SORBIDRAFT_10g026490 [Sorghum bicolor]
          Length = 318

 Score =  258 bits (658), Expect = 4e-66
 Identities = 142/260 (54%), Positives = 169/260 (65%)
 Frame = +1

Query: 1   KKVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECL 180
           +K K+LEA+ +PIE    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L
Sbjct: 63  RKAKQLEARSLPIEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINEAAPDKL 122

Query: 181 KVASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKEILKMEKVSATAESEYKQ 360
           K   V EVPREFHPNFSAKWRRY+YI PL E            IL     S   E+    
Sbjct: 123 KPLHVSEVPREFHPNFSAKWRRYMYIFPLDE--------DANLILGEAHSSKILENSEHN 174

Query: 361 LNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVATLPCI 540
           + KP +FDVA V++ L+ L G++LSYK+FARDTQASRS GP TEC M+H+RAAVA L   
Sbjct: 175 I-KPQSFDVAKVDKILKTLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLH-Y 232

Query: 541 GKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRRASAP 720
              D      VMCVELVANRFLRKM                  +  LNLMEAT RRA+AP
Sbjct: 233 ANEDYKEGMMVMCVELVANRFLRKMVRVLVATAIREAAAGAGDDALLNLMEATDRRATAP 292

Query: 721 PAPPDGLCLVDVGYEDINNE 780
           PAPP+GLCL+DVGYED   +
Sbjct: 293 PAPPEGLCLIDVGYEDFTKQ 312


>ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-like [Cicer arietinum]
          Length = 422

 Score =  257 bits (657), Expect = 5e-66
 Identities = 139/269 (51%), Positives = 173/269 (64%), Gaps = 5/269 (1%)
 Frame = +1

Query: 4   KVKELEAKGIPIEAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLK 183
           K + L+ KG+PIE   SVAGRTDKGV+AL QVCSFYTW+KD+   ++E  IN  A   L+
Sbjct: 157 KTQLLKEKGLPIEGCASVAGRTDKGVTALQQVCSFYTWKKDINPRDIEDAINDGAPGKLR 216

Query: 184 VASVYEVPREFHPNFSAKWRRYLYILPLHEGEGDGMCNSTKE-----ILKMEKVSATAES 348
           V SV+EV R FHPNFSAKWRRYLYI PL + EGD   + + E      +  E   + ++ 
Sbjct: 217 VISVHEVSRAFHPNFSAKWRRYLYIFPLTD-EGDKDQSGSNEESCDRFIYNEVCDSVSKD 275

Query: 349 EYKQLNKPYNFDVALVNQFLQQLEGRSLSYKIFARDTQASRSSGPATECTMYHARAAVAT 528
           E +   K Y F V  VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC +YHARA  A 
Sbjct: 276 ELENEMKSYVFSVRKVNRLLQKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEAR 335

Query: 529 LPCIGKHDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXXDPNIFLNLMEATCRR 708
           LP     +      VMC+ELVANRFLRKM                + +  L LM+ATCRR
Sbjct: 336 LPTTDNGEA----RVMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLRLMDATCRR 391

Query: 709 ASAPPAPPDGLCLVDVGYEDINNENSIFL 795
           A+APPAPPDGLCLVDVGY + + +    L
Sbjct: 392 ATAPPAPPDGLCLVDVGYAEFDQKKCFIL 420