BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00021777
         (1365 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster...   149   3e-33
ref|XP_006590044.1| PREDICTED: uncharacterized protein LOC102665...   148   6e-33
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]   147   1e-32
gb|ACI62137.1| polyprotein [Drosophila melanogaster]                  146   2e-32
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   145   3e-32
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   145   5e-32
gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]   144   9e-32
gb|AAT38797.2| Polyprotein, putative [Solanum demissum]               119   1e-31
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]   144   1e-31
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   143   2e-31
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         143   2e-31
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   143   2e-31
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             128   3e-31
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   142   3e-31
emb|CBI37296.3| unnamed protein product [Vitis vinifera]              142   3e-31
ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898...   142   3e-31
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]   108   4e-31
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   110   5e-31
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   141   6e-31
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   140   2e-30

>pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
            gi|8702|emb|CAA30503.1| unnamed protein product
            [Drosophila melanogaster]
          Length = 982

 Score =  149 bits (375), Expect = 3e-33
 Identities = 83/206 (40%), Positives = 111/206 (53%), Gaps = 5/206 (2%)
 Frame = +3

Query: 750  LFIMKPIPTECFLITS*ISNLWHNRFGHVNNECLS---RISATVSHSXXXXXXXXXCDNC 920
            L++ +     CF       +LWH R GH+N   L    R                 C  C
Sbjct: 118  LYMFQGKHNSCFAAVDADGSLWHKRNGHLNTSSLQEMVRKKMVYGVEKVVFKPDAVCKTC 177

Query: 921  ITAKLHKKPFNKSSRTTTR-CLEIIHLDLCGPIN-PSTLHEKYILTFSDDLSKMT*VYFL 1094
            + AK+H +PF K++R+     L++IH DLCGP + PS    KY LTF DD S+   VYFL
Sbjct: 178  MLAKIHVQPFPKTTRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTFIDDKSRRIFVYFL 237

Query: 1095 RHKSEVFKYFLKFRKRV*TENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNP 1274
            R K EVF  F++F+K V  +   KI C   DNG EF +N F DY    GI ++  +P+ P
Sbjct: 238  RKKDEVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTP 297

Query: 1275 QQNGVVERKNKTLIEMIQSQLHSSQL 1352
            QQNGV ER N+TL+EM +  L  S+L
Sbjct: 298  QQNGVAERANRTLVEMARCMLLQSEL 323


>ref|XP_006590044.1| PREDICTED: uncharacterized protein LOC102665857 [Glycine max]
          Length = 678

 Score =  148 bits (373), Expect = 6e-33
 Identities = 82/185 (44%), Positives = 110/185 (59%), Gaps = 4/185 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNNECLSRISAT--VSHSXXXXXXXXXCDNCITAKLHKKPFNKSSRT-TTRC 980
            LWH RFGH+N + L R++    V            C+ C+  K  +K F K S T  T+ 
Sbjct: 384  LWHLRFGHLNFDGLERLAKKEMVRDLPSINHPDQLCERCLIGKQFRKSFPKESTTRATKP 443

Query: 981  LEIIHLDLCGPINPSTLHE-KYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TEN 1157
            LE+IH D+CGPI P++  + KY L F DD S+ T VYFL+ KSEVF+ F KF+  V  E+
Sbjct: 444  LELIHTDVCGPIKPNSFGKNKYFLLFIDDYSRKTWVYFLKEKSEVFENFKKFKALVEKES 503

Query: 1158 HTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQL 1337
               I     D G EFTSN+F  Y    GIR+   VP +PQQNGV ERKN+T++ M++S L
Sbjct: 504  GLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTVPRSPQQNGVAERKNRTILNMVRSML 563

Query: 1338 HSSQL 1352
             S ++
Sbjct: 564  KSKKM 568


>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
          Length = 1318

 Score =  147 bits (371), Expect = 1e-32
 Identities = 76/187 (40%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT--VSHSXXXXXXXXXCDNCITAKLHKKPFNKSSRT-TT 974
            + LWH R GH+N + +  + +   V+           C+ C+  K  + PF K S+T T 
Sbjct: 456  ARLWHRRLGHINYQFIKNMGSLNLVNDMPIITEVEKTCEVCLQGKQSRHPFPKQSQTRTA 515

Query: 975  RCLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*T 1151
              L++IH D+CGPI   +L+  KY + F DD S+   ++FL+ KSE  +YF+KF+  V  
Sbjct: 516  NRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFMKFKVLVEK 575

Query: 1152 ENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQS 1331
            +   KI     DNG E+TSNEFK   T++GI++   VPY+PQQNGV ERKN+T++EMI+ 
Sbjct: 576  QTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVPYSPQQNGVSERKNRTIMEMIRC 635

Query: 1332 QLHSSQL 1352
             L   Q+
Sbjct: 636  LLFEQQM 642


>gb|ACI62137.1| polyprotein [Drosophila melanogaster]
          Length = 1319

 Score =  146 bits (369), Expect = 2e-32
 Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
 Frame = +3

Query: 813  WHNRFGHVNNECLSRISA---TVSHSXXXXXXXXXCDNCITAKLHKKPFNKSS-RTTTRC 980
            WHNRFGH+N +CL  I      +            CD C  AK+H  PF ++S R T   
Sbjct: 403  WHNRFGHLNFQCLKEIKEKELVIGMDFKNMSVNINCDTCNMAKIHVLPFPQNSERATQSV 462

Query: 981  LEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TEN 1157
            LE++H D+CGP+N S+L   KY +TF DD S+   +YF+  K+EVF  F  F+  V  + 
Sbjct: 463  LELVHSDVCGPMNVSSLGGNKYFVTFIDDYSRKIFIYFMHAKNEVFDKFKLFKSYVECQT 522

Query: 1158 HTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQL 1337
              KI     DNG E+ + +F +Y    GI+++  VPY PQQNGV ER N+T++EM +S L
Sbjct: 523  GKKIKALRSDNGTEYVNRQFTEYLNTCGIKRQLTVPYTPQQNGVAERANRTIVEMAKSML 582

Query: 1338 HSSQL 1352
              ++L
Sbjct: 583  IHAKL 587


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  145 bits (367), Expect = 3e-32
 Identities = 79/187 (42%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT-VSHSXXXXXXXXXCDNCITAKLHKKPFNKS-SRTTTR 977
            SNLWH R+GH+N + L  +S   +            C+ CI  K  KKPF K  SR  + 
Sbjct: 437  SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASS 496

Query: 978  CLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
            CLEIIH DLCGP+  ++    +Y L F+DD S+M+ VYFL+ K+E F+ F KF+  V  +
Sbjct: 497  CLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQ 556

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EF SN+FK +  ++G+ +E   PY+P+QNGV ERKN+T++EM +S 
Sbjct: 557  SGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSM 616

Query: 1335 LHSSQLS 1355
            + +  LS
Sbjct: 617  MKAKNLS 623


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  145 bits (365), Expect = 5e-32
 Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 3/187 (1%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT-VSHSXXXXXXXXXCDNCITAKLHKKPFNKS-SRTTTR 977
            SNLWH R+GH+N + L  +S   +            C+ CI  K  KKPF K  SR  + 
Sbjct: 422  SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASS 481

Query: 978  CLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
            CLEIIH DLCGP+  ++    +Y L F+DD S+M+ VYFL+ K+E F+ F KF+  V  +
Sbjct: 482  CLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQ 541

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EF SN+FK +  ++G+ +E   PY+P QNGV ERKN+T++EM +S 
Sbjct: 542  SGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPYSPXQNGVAERKNRTVVEMARSM 601

Query: 1335 LHSSQLS 1355
            + +  LS
Sbjct: 602  MKAKNLS 608


>gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
          Length = 1266

 Score =  144 bits (363), Expect = 9e-32
 Identities = 75/187 (40%), Positives = 111/187 (59%), Gaps = 4/187 (2%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT--VSHSXXXXXXXXXCDNCITAKLHKKPFNKSSRT-TT 974
            + LWH R GH+N + +  + +   V+           C+ C+  K  + PF K S+T  T
Sbjct: 456  ARLWHRRLGHINYQFIKNMGSLNLVNDMPVITEVEKTCEVCLQGKQSRHPFPKQSQTRAT 515

Query: 975  RCLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*T 1151
              L++IH D+CGPI   +L+  KY + F DD S+   ++FL+ KSE  +YF+KF+  V  
Sbjct: 516  NRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFMKFKVLVEK 575

Query: 1152 ENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQS 1331
            +   KI     DNG E+TSNEFK   T++GI++   V Y+PQQNGV ERKN+T++EMI+ 
Sbjct: 576  QTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVTYSPQQNGVSERKNRTIMEMIRC 635

Query: 1332 QLHSSQL 1352
             L   Q+
Sbjct: 636  LLFEQQM 642


>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
          Length = 1793

 Score =  119 bits (299), Expect(3) = 1e-31
 Identities = 71/183 (38%), Positives = 100/183 (54%), Gaps = 5/183 (2%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT--VSHSXXXXXXXXXCDNCITAKLHKKPF--NKSSRTT 971
            +NLWH RFGH N   ++ +     V +          C+ C   K  K PF  N+  R  
Sbjct: 566  TNLWHKRFGHFNLRSIAEMKKKELVENMPEFLSNAQVCETCQQGKQTKLPFQANQVWRAN 625

Query: 972  TRCLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV* 1148
             + L++IH D+CGPI   +L   KY L F DD ++M  VYF+R KSEVF  F +F+  V 
Sbjct: 626  QK-LQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRLKSEVFDVFKQFKALVE 684

Query: 1149 TENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQ 1328
             + + +I     DNG E TS +F ++     I  +  +PY PQQNGV ERKN+T++EM +
Sbjct: 685  NQCNLRIKALRSDNGGEHTSFQFVEFCNSTCIECQLTLPYTPQQNGVSERKNRTVMEMAR 744

Query: 1329 SQL 1337
              L
Sbjct: 745  CLL 747



 Score = 34.7 bits (78), Expect(3) = 1e-31
 Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 21/168 (12%)
 Frame = +2

Query: 8   LSSWDAFKDSIYLIRNRMPFDALCQALLEKEQGNNQKKSANYE-VQFVQKQ--------- 157
           +SS++  KD       ++    L  AL  +EQ  N ++    E    VQKQ         
Sbjct: 286 ISSFEKSKDL-----GKLSLGELMGALQAQEQRRNMRRDKFTEGAVSVQKQIFGKGKQQV 340

Query: 158 --NKKRFQDKGRYEGK-KG*NKYCHICDRNNHDTKYYFF-------NAKGPNYNPNRRSR 307
             N K   D G   G  K     C  C R  H  KY ++       N K   +       
Sbjct: 341 NQNNKVKHDGGNNSGDVKKKFPPCKYCKRTTHLEKYCWWRVDAICGNCKQTGHISKVCKS 400

Query: 308 AKDLQQNSETHEANMVEIKEDQVY-VLYTNRDNNNAGWYLDLGCNSHM 448
             +   + +   A+  +  EDQ++ V Y + + ++  W LD GC  H+
Sbjct: 401 RANASGSLQAQVADAADAHEDQLFAVSYFSINESSDSWILDSGCTHHL 448



 Score = 31.2 bits (69), Expect(3) = 1e-31
 Identities = 20/82 (24%), Positives = 40/82 (48%)
 Frame = +1

Query: 502 VKTAGNDELPIQERGDITLNFGNDTIRLTIVLYVEGLRKNLISLYKLLTEGYNLRAFQKE 681
           VK    + + ++ RG ++++  +    +  +LY   + +NL+S+ ++L   Y+L    K 
Sbjct: 466 VKVGNGEAVEVKGRGTMSISIISGIKTIPDILYTPDMSQNLLSVGQMLENNYSLHF--KN 523

Query: 682 NEETCCQISYDNKIVVKVQNIM 747
           +E      S      VK+ NIM
Sbjct: 524 HECVVSDPSGVELFYVKMSNIM 545


>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
          Length = 1183

 Score =  144 bits (362), Expect = 1e-31
 Identities = 78/187 (41%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT-VSHSXXXXXXXXXCDNCITAKLHKKPFNKS-SRTTTR 977
            SNLWH R+GH+N + L  +S   +            C+ CI  K  KKPF K  SR  + 
Sbjct: 371  SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASS 430

Query: 978  CLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
            CLEIIH DLCGP+  ++    +Y L F++D S+M+ VYFL+ K+E F+ F KF+  V  +
Sbjct: 431  CLEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETFETFKKFKAFVEKQ 490

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EF SN+FK +  ++G+ +E   PY+P+QNGV ERKN+T++EM +S 
Sbjct: 491  SGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSM 550

Query: 1335 LHSSQLS 1355
            + +  LS
Sbjct: 551  MKAKNLS 557


>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  143 bits (360), Expect = 2e-31
 Identities = 78/187 (41%), Positives = 112/187 (59%), Gaps = 3/187 (1%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRISAT-VSHSXXXXXXXXXCDNCITAKLHKKPFNKS-SRTTTR 977
            SNLWH R+GH+N + L  +S   +            C+ CI  K  KKPF K  SR  + 
Sbjct: 548  SNLWHLRYGHLNVKGLKLLSKKEMVFELPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASS 607

Query: 978  CLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
            CLEIIH DLCGP+  ++    +Y L F+DD S+M+ VYFL+ K+E F+ F KF+  V  +
Sbjct: 608  CLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQ 667

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D   EF SN+FK +  ++G+ +E   PY+P+QNGV ERKN+T++EM +S 
Sbjct: 668  SGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSM 727

Query: 1335 LHSSQLS 1355
            + +  LS
Sbjct: 728  MXAKNLS 734


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  143 bits (360), Expect = 2e-31
 Identities = 86/186 (46%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNN---ECLSRISATVSHSXXXXXXXXXCDNCITAKLHKKPFNK-SSRTTTR 977
            LWH RFGH+N    E LSR    V            C+ C+  K  K  F K SS    +
Sbjct: 467  LWHLRFGHLNFGGLELLSR-KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 978  CLEIIHLDLCGPINPSTLHEK-YILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
             LE+IH D+CGPI P +L +  Y L F DD S+ T VYFL+ KSEVF+ F KF+  V  E
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EFTS EF  Y    GIR++  VP +PQQNGVVERKN+T++EM +S 
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSM 645

Query: 1335 LHSSQL 1352
            L S +L
Sbjct: 646  LKSKRL 651


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  143 bits (360), Expect = 2e-31
 Identities = 86/186 (46%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNN---ECLSRISATVSHSXXXXXXXXXCDNCITAKLHKKPFNK-SSRTTTR 977
            LWH RFGH+N    E LSR    V            C+ C+  K  K  F K SS    +
Sbjct: 467  LWHLRFGHLNFGGLELLSR-KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 978  CLEIIHLDLCGPINPSTLHEK-YILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
             LE+IH D+CGPI P +L +  Y L F DD S+ T VYFL+ KSEVF+ F KF+  V  E
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EFTS EF  Y    GIR++  VP +PQQNGVVERKN+T++EM +S 
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSM 645

Query: 1335 LHSSQL 1352
            L S +L
Sbjct: 646  LKSKRL 651


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  128 bits (321), Expect(3) = 3e-31
 Identities = 67/181 (37%), Positives = 104/181 (57%)
 Frame = +3

Query: 810  LWHNRFGHVNNECLSRISATVSHSXXXXXXXXXCDNCITAKLHKKPFNKSSRTTTRCLEI 989
            LWH + GH++++ +  +                C++CIT+K H+  F+ S+      LE+
Sbjct: 415  LWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLEL 474

Query: 990  IHLDLCGPINPSTLHEKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TENHTKI 1169
            +H D+     PS    KY ++F DD S+   VY ++ KS+VF  F  F+ RV  ++  KI
Sbjct: 475  VHSDVWQAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKKI 534

Query: 1170 ACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQLHSSQ 1349
             CF  DNG E+TS EF D+  K+GI+++  V Y PQQNGV ER N+TL+E  ++ L ++ 
Sbjct: 535  KCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAG 594

Query: 1350 L 1352
            L
Sbjct: 595  L 595



 Score = 31.2 bits (69), Expect(3) = 3e-31
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 7/146 (4%)
 Frame = +2

Query: 44  LIRNRMPFDALCQALLEKEQGNNQKKSANYEVQ------FVQKQNKKRFQDKGRYEGKKG 205
           ++ + + FD +  A+LE+E     K+     +Q       ++ ++ +R Q  GR   K  
Sbjct: 163 ILTDYLVFDDVAAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSS 222

Query: 206 *-NKYCHICDRNNHDTKYYFFNAKGPNYNPNRRSRAKDLQQNSETHEANMVEIKEDQVYV 382
             N  C+ C +  H  K  +  A+  N   N  S + D   ++   EA++          
Sbjct: 223 KKNLTCYNCGKKGHLKKDCWNLAQNSNPQGNVASTSDD--GSALCCEASIAR-------- 272

Query: 383 LYTNRDNNNAGWYLDLGCNSHMTGKK 460
               R      W +D G   HMT +K
Sbjct: 273 --EGRKRFADIWLIDSGATYHMTSRK 296



 Score = 24.6 bits (52), Expect(3) = 3e-31
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +1

Query: 490 NGKFVKTAGNDELPIQERGDITLNFGNDTIR-LTIVLYVEGLRKNLISLYKLLTEGYNLR 666
           +G  V +  +  L I   G I L   + T++ +  V +V+GL+KNL+S Y +L       
Sbjct: 306 SGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLS-YGILDNS---- 360

Query: 667 AFQKENEETCCQISYDNKIVVKVQNI 744
           A Q E ++   +I     +V+K + I
Sbjct: 361 ATQIETQKGVMKIFQGALVVMKGEKI 386


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  142 bits (358), Expect = 3e-31
 Identities = 85/186 (45%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNN---ECLSRISATVSHSXXXXXXXXXCDNCITAKLHKKPFNK-SSRTTTR 977
            LWH RFGH+N    E LSR    V            C+ C+  K  K  F K SS    +
Sbjct: 467  LWHLRFGHLNFGGLELLSR-KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 978  CLEIIHLDLCGPINPSTLHEK-YILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
             LE+IH D+CGPI P +L +  Y L F DD S+ T VYFL+ KSEVF+ F KF+  V  E
Sbjct: 526  SLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EFTS EF  Y    GIR++  VP +PQQNGV ERKN+T++EM +S 
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSM 645

Query: 1335 LHSSQL 1352
            L S +L
Sbjct: 646  LKSKRL 651


>emb|CBI37296.3| unnamed protein product [Vitis vinifera]
          Length = 3048

 Score =  142 bits (358), Expect = 3e-31
 Identities = 80/209 (38%), Positives = 115/209 (55%), Gaps = 6/209 (2%)
 Frame = +3

Query: 756  IMKPIPTECF-LITS*ISNLWHNRFGHVNNECLSRISAT--VSHSXXXXXXXXXCDNCIT 926
            + +PI + CF  +T  I  LWH R+GH++ + L  +     V+           C +C+ 
Sbjct: 434  LSQPISSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLV 493

Query: 927  AKLHKKPFNKSSR-TTTRCLEIIHLDLCGPINP-STLHEKYILTFSDDLSKMT*VYFLRH 1100
             K H+    K S       L+++H D+CGPINP S   ++Y+LTF+DD S+ T VYFL  
Sbjct: 494  GKQHRSSIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTWVYFLVE 553

Query: 1101 KSEVFKYFLKFRKRV*TENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQ 1280
            KSE F  F  F+  V  E  + + C   D G EFTS EF  +    GIR++    Y PQQ
Sbjct: 554  KSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRRQLTAAYTPQQ 613

Query: 1281 NGVVERKNKTLIEMIQSQLHSSQL-STKW 1364
            NGV ERKN+T++ M++S L + +L  T W
Sbjct: 614  NGVAERKNRTIMNMVRSMLSAKKLPKTFW 642


>ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898|gb|EDW75799.1| GK15001
            [Drosophila willistoni]
          Length = 1249

 Score =  142 bits (358), Expect = 3e-31
 Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
 Frame = +3

Query: 729  KSTEHNGLFIMKPIPTECFLITS*ISNLWHNRFGHVNNECLSRISA---TVSHSXXXXXX 899
            K+ +   LF+ +      F       +LWH RFGH+N + L++I++       S      
Sbjct: 367  KAKKIGNLFVFEAESENLFAAVGEDVSLWHKRFGHLNYKSLTQIASKGLVRGLSVTNFAP 426

Query: 900  XXXCDNCITAKLHKKPFNKSSRT-TTRCLEIIHLDLCGPINPSTLH-EKYILTFSDDLSK 1073
               C  C+ +K+H +PF K + + ++  L+++H D+CGP    +L   +Y LTF DD S+
Sbjct: 427  NTPCKTCMVSKIHVQPFPKMTESRSSELLQLVHSDVCGPFGTKSLGGSRYFLTFIDDKSR 486

Query: 1074 MT*VYFLRHKSEVFKYFLKFRKRV*TENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKE 1253
               VYFL+ K EVF  FL+F+  V  +   K+ C   DNG E+ +N F DY  K GI ++
Sbjct: 487  RIFVYFLKGKDEVFGKFLEFKSLVERQTGKKLKCIRSDNGREYVNNAFDDYLKKNGILRQ 546

Query: 1254 EIVPYNPQQNGVVERKNKTLIEMIQSQLHSSQL 1352
              + Y PQQNGV ER N+TL+EM +  L  S L
Sbjct: 547  LTIAYTPQQNGVAERANRTLVEMSRCLLAQSGL 579


>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
          Length = 1220

 Score =  108 bits (271), Expect(3) = 4e-31
 Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
 Frame = +3

Query: 804  SNLWHNRFGHVNNECLSRI--SATVSHSXXXXXXXXXCDNCITAKLHKKPFNKS-SRTTT 974
            S +WH  +GH N + L  +  +  V            C++C   K  ++PF ++ S+  T
Sbjct: 433  SVVWHKSYGHFNLKSLRFMQEAGMVEDMLEISVNAQTCESCELGKQQRQPFPQNMSKRAT 492

Query: 975  RCLEIIHLDLCGPINPSTLHEK-YILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*T 1151
              LE+IH  +CGP++ ++L    Y   F DDLS+MT VYFL+ KS+V   F  F+K V T
Sbjct: 493  HELELIHSYICGPMSIASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSMFKSFKKMVET 552

Query: 1152 ENHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQS 1331
            ++   +     DNG E+ S EF               PY PQQN V ERKNKT++EM + 
Sbjct: 553  QSGQNVKVLIIDNGGEYISKEF-----------NLTAPYLPQQNEVSERKNKTVMEMARC 601

Query: 1332 QLHSSQL 1352
             L   +L
Sbjct: 602  MLFEKRL 608



 Score = 42.7 bits (99), Expect(3) = 4e-31
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
 Frame = +2

Query: 155 QNKKRFQD-KGRYEG--KKG*NKYCHICDRNNHDTKYYFFNAKGPNYNPNR--------- 298
           Q KK F++ KG+ EG  +KG    C  C R NH  K  +   K P +N N          
Sbjct: 203 QGKKFFKNNKGKVEGFSRKGKFPSCFHCRRTNHAEKDCWNKGK-PLFNCNFCNKLCHSEK 261

Query: 299 --RSRAKDLQQNSETHEANMVEIKEDQVYVLYTNRDNNNAG---WYLDLGCNSHMT 451
             R++ K  QQ  E + + + E K D  ++   ++  ++     W +D GC SHMT
Sbjct: 262 YCRAKKKQSQQQPEKNASVIEENKNDDEHLFMASQTLSSHELNTWLIDSGCTSHMT 317



 Score = 32.0 bits (71), Expect(3) = 4e-31
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +1

Query: 502 VKTAGNDELPIQERGDITLNFGNDTIRLTIVLYVEGLRKNLISLYKLLTEGYNLRAFQKE 681
           VK    + +  + +G I ++    T  +T VLY+  L +NL+S+ ++L  GY +      
Sbjct: 334 VKLGNGEVVQAKGKGTIAISTKRGTKIVTNVLYIPDLDQNLLSVAQMLRNGYAV----SF 389

Query: 682 NEETCCQISYDNKIVVKVQ 738
            E  C   +   K + K++
Sbjct: 390 KENFCFITNVQEKEIAKIK 408


>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  110 bits (275), Expect(3) = 5e-31
 Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNNECLSRISA---TVSHSXXXXXXXXXCDNCITAKLHKKPF-NKSSRTTTR 977
            +WH R GH N   +S+IS                  C  C   K+ K  F +K   +T+R
Sbjct: 799  VWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSR 858

Query: 978  CLEIIHLDLCGPINPSTLH-EKYILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
             LE++H+DL GP+N ++L+  KY L   DD S+ T V F++ K    + F  F  ++ +E
Sbjct: 859  PLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSE 918

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
               KI     D+G EF +  F+ +  K GI  E   P  PQQNGVVERKN+TL EM ++ 
Sbjct: 919  KELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTM 978

Query: 1335 LHSSQLS 1355
            +H + L+
Sbjct: 979  IHENNLA 985



 Score = 40.8 bits (94), Expect(3) = 5e-31
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = +1

Query: 457 KMTFLNLKVSNNGKFVKTAGNDELPIQERGDITLNFGNDTIRLTIVLYVEGLRKNLISLY 636
           K  FL L + + G+ VK  GN    I   G I    GN +I +  V  V+GL+ NL+S+ 
Sbjct: 684 KALFLTLTMKDGGE-VKFGGNQTGKIIGTGTI----GNSSISINNVWLVDGLKHNLLSIS 738

Query: 637 KLLTEGYNLRAFQKENEETCCQISYDNKIVV----KVQNI 744
           +    GY++  F K N   C  ++ D+K +     +V+N+
Sbjct: 739 QFCDNGYDV-TFSKTN---CTLVNKDDKSITFKGKRVENV 774



 Score = 32.0 bits (71), Expect(3) = 5e-31
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 416 WYLDLGCNSHMTGKK 460
           WYLD GC+ HMTG+K
Sbjct: 670 WYLDSGCSRHMTGEK 684


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  141 bits (356), Expect = 6e-31
 Identities = 85/186 (45%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNN---ECLSRISATVSHSXXXXXXXXXCDNCITAKLHKKPFNK-SSRTTTR 977
            LWH RFGH+N    E LSR    V            C+ C+  K  K  F K SS    +
Sbjct: 467  LWHLRFGHLNFGGLELLSR-KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 978  CLEIIHLDLCGPINPSTLHEK-YILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
             LE+IH D+CGPI P +L +  Y L F DD S+ T VYFL+ KSEVF+ F KF+  V  E
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D G EFTS EF  Y    GIR++  VP +PQQNGV ERKN+T++EM +S 
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSM 645

Query: 1335 LHSSQL 1352
            L S +L
Sbjct: 646  LKSKRL 651


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  140 bits (352), Expect = 2e-30
 Identities = 84/186 (45%), Positives = 106/186 (56%), Gaps = 5/186 (2%)
 Frame = +3

Query: 810  LWHNRFGHVNN---ECLSRISATVSHSXXXXXXXXXCDNCITAKLHKKPFNK-SSRTTTR 977
            LWH RFGH+N    E LSR    V            C+ C+     K  F K SS    +
Sbjct: 467  LWHLRFGHLNFGGLELLSR-KEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQK 525

Query: 978  CLEIIHLDLCGPINPSTLHEK-YILTFSDDLSKMT*VYFLRHKSEVFKYFLKFRKRV*TE 1154
             LE+IH D+CGPI P +L +  Y L F DD S+ T VYFL+ KSEVF+ F KF+  V  E
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 1155 NHTKIACFCFDNGIEFTSNEFKDYYTKKGIRKEEIVPYNPQQNGVVERKNKTLIEMIQSQ 1334
            +   I     D+G EFTS EF  Y    GIR++  VP +PQQNGV ERKN+T++EM +S 
Sbjct: 586  SGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSM 645

Query: 1335 LHSSQL 1352
            L S +L
Sbjct: 646  LKSKRL 651