BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00021596
         (633 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006845708.1| hypothetical protein AMTR_s00019p00240430 [A...   153   3e-35
ref|XP_006280485.1| hypothetical protein CARUB_v10026422mg [Caps...   132   8e-29
ref|XP_003620948.1| Protein OSB3 [Medicago truncatula] gi|355495...   130   3e-28
ref|NP_568639.1| protein OSB3 [Arabidopsis thaliana] gi|75328911...   121   1e-25
ref|NP_974885.1| protein OSB3 [Arabidopsis thaliana] gi|33200777...   120   2e-25
ref|XP_002863546.1| hypothetical protein ARALYDRAFT_494502 [Arab...   120   2e-25
gb|AAM61481.1| unknown [Arabidopsis thaliana]                         119   7e-25
ref|XP_006393529.1| hypothetical protein EUTSA_v10011640mg [Eutr...   112   1e-22
ref|XP_001703164.1| chloroplast-targeted RNA-binding protein [Ch...   110   3e-22
ref|XP_002327104.1| predicted protein [Populus trichocarpa] gi|5...   107   3e-21
ref|XP_002529526.1| hypothetical protein RCOM_1716690 [Ricinus c...   102   9e-20
ref|XP_002510278.1| conserved hypothetical protein [Ricinus comm...   100   6e-19
ref|XP_006398112.1| hypothetical protein EUTSA_v10000889mg [Eutr...    97   4e-18
ref|XP_004513105.1| PREDICTED: protein OSB2, chloroplastic-like ...    97   4e-18
ref|XP_004295481.1| PREDICTED: protein OSB3, chloroplastic/mitoc...    96   7e-18
ref|XP_002953456.1| hypothetical protein VOLCADRAFT_82305 [Volvo...    94   4e-17
ref|XP_006282647.1| hypothetical protein CARUB_v10004988mg, part...    92   9e-17
ref|XP_002869952.1| hypothetical protein ARALYDRAFT_492872 [Arab...    92   9e-17
ref|NP_001031674.1| plastid transcriptionally active 9 [Arabidop...    92   1e-16
dbj|BAC42861.1| unknown protein [Arabidopsis thaliana]                 92   1e-16

>ref|XP_006845708.1| hypothetical protein AMTR_s00019p00240430 [Amborella trichopoda]
           gi|548848280|gb|ERN07383.1| hypothetical protein
           AMTR_s00019p00240430 [Amborella trichopoda]
          Length = 500

 Score =  153 bits (387), Expect = 3e-35
 Identities = 88/201 (43%), Positives = 114/201 (56%), Gaps = 9/201 (4%)
 Frame = +3

Query: 57  SVEDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVKPMLKEVPE 236
           +VE LWK  FA P  W+D+R  K++ +YPDF+  ++  +LWL D+ TP  V   L E PE
Sbjct: 225 AVEGLWKELFAKPYNWYDNRFDKRNPRYPDFRNKNSKEALWL-DKHTPDSVLSAL-ESPE 282

Query: 237 --KAFATSPSKEDL-------WKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMD 389
               FA     E +       W+  FADPSKW D+RK+K    HPDFKHK+T E LW+  
Sbjct: 283 FCAKFANGQKIEKIRADIGHRWEDLFADPSKWCDNRKVKTQPTHPDFKHKETGEALWLDG 342

Query: 390 IKTPCWVTPMLNNLQEKEFSASPCLEGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFR 569
            K   WV   L+ L+  E         LW+  FADPSKW DNR  K    +PDFKHK+  
Sbjct: 343 PKAE-WV---LSKLKTLEIDQRQDKGHLWEDLFADPSKWCDNRKVKTQPTHPDFKHKETG 398

Query: 570 EALWIKDIRTPVWVVVELSKL 632
           EALW+  I+ P WV+ +L  L
Sbjct: 399 EALWLDGIK-PEWVLSKLKTL 418



 Score =  148 bits (374), Expect = 1e-33
 Identities = 82/187 (43%), Positives = 104/187 (55%), Gaps = 2/187 (1%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVKPMLK--EVPEKAF 245
           W+  FADPS W D+RK+K    +PDFK   TG +LWLD  +   WV   LK  E+ ++  
Sbjct: 304 WEDLFADPSKWCDNRKVKTQPTHPDFKHKETGEALWLDGPKAE-WVLSKLKTLEIDQRQ- 361

Query: 246 ATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCWVTPMLN 425
                K  LW+  FADPSKW D+RK+K    HPDFKHK+T E LW+  IK P WV   L 
Sbjct: 362 ----DKGHLWEDLFADPSKWCDNRKVKTQPTHPDFKHKETGEALWLDGIK-PEWVLSKLK 416

Query: 426 NLQEKEFSASPCLEGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIRTPV 605
            L E +   +     LW    A+  KW DNR  K + K PDFKHKD  + LW+    TP 
Sbjct: 417 TL-EIDQRQNKDSNDLWKDLVANRDKWWDNRLSKVNPKAPDFKHKDSGKGLWLNG-STPD 474

Query: 606 WVVVELS 626
           W +  L+
Sbjct: 475 WALTNLT 481



 Score =  100 bits (249), Expect = 3e-19
 Identities = 55/128 (42%), Positives = 73/128 (57%)
 Frame = +3

Query: 69  LWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVKPMLKEVPEKAFA 248
           LW+  FADPS W D+RK+K    +PDFK   TG +LWLD  + P WV   LK + E    
Sbjct: 366 LWEDLFADPSKWCDNRKVKTQPTHPDFKHKETGEALWLDGIK-PEWVLSKLKTL-EIDQR 423

Query: 249 TSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCWVTPMLNN 428
            +    DLWK   A+  KW+D+R  K + K PDFKHKD+ + LW ++  TP W    L  
Sbjct: 424 QNKDSNDLWKDLVANRDKWWDNRLSKVNPKAPDFKHKDSGKGLW-LNGSTPDWALTNLTP 482

Query: 429 LQEKEFSA 452
            + KE +A
Sbjct: 483 SKAKEEAA 490


>ref|XP_006280485.1| hypothetical protein CARUB_v10026422mg [Capsella rubella]
           gi|482549189|gb|EOA13383.1| hypothetical protein
           CARUB_v10026422mg [Capsella rubella]
          Length = 437

 Score =  132 bits (332), Expect = 8e-29
 Identities = 80/205 (39%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKPMLKEVPEK 239
           WK    +P  WFD R  K +     K+PDFK  + G+SLWL     P W    L E+   
Sbjct: 229 WKHLIENPKEWFDHRGNKANGLVKPKHPDFKRKAGGLSLWLST--VPDWALLKLDELEFD 286

Query: 240 AFATSPS-------KEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKT 398
            F  +          E+ WK    +P KWFD+R  K + K PDFKHK+T E LW+ D  +
Sbjct: 287 VFVPNGDIKLKQLKGEESWKDLVQNPDKWFDNRSEKTNVKAPDFKHKETGEALWMTD--S 344

Query: 399 PCWVT---PMLNNLQEKEFSASPCL----EGLWDSFFADPSKWVDNRSFKKSNKYPDFKH 557
           P WV    P L   QE+   ++       E  W +   DPSKW DNR  K++ K PDFKH
Sbjct: 345 PIWVLSKLPPLKKNQERPLMSNTVSLHKKEESWKNLVEDPSKWWDNRVDKRNPKGPDFKH 404

Query: 558 KDFREALWIKDIRTPVWVVVELSKL 632
           K+  EALWI    +P W + EL  L
Sbjct: 405 KETGEALWISS--SPTWALSELPPL 427



 Score =  102 bits (255), Expect = 7e-20
 Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
 Frame = +3

Query: 63  EDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVK---PMLKEVP 233
           E+ WK    +P  WFD+R  K + K PDFK   TG +LW+ D  +P+WV    P LK+  
Sbjct: 302 EESWKDLVQNPDKWFDNRSEKTNVKAPDFKHKETGEALWMTD--SPIWVLSKLPPLKKNQ 359

Query: 234 EKAFATSP----SKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTP 401
           E+   ++      KE+ WK    DPSKW+D+R  K++ K PDFKHK+T E LWI    +P
Sbjct: 360 ERPLMSNTVSLHKKEESWKNLVEDPSKWWDNRVDKRNPKGPDFKHKETGEALWIS--SSP 417

Query: 402 CWVTPMLNNLQEKE 443
            W    L  L++ +
Sbjct: 418 TWALSELPPLEKNQ 431


>ref|XP_003620948.1| Protein OSB3 [Medicago truncatula] gi|355495963|gb|AES77166.1|
           Protein OSB3 [Medicago truncatula]
          Length = 491

 Score =  130 bits (327), Expect = 3e-28
 Identities = 77/212 (36%), Positives = 107/212 (50%), Gaps = 20/212 (9%)
 Frame = +3

Query: 57  SVEDLWKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKPMLK 224
           S+   W     DP  W+D R  K++     KYPDFK     +S+WLD        K +L 
Sbjct: 273 SLSSTWGDLLDDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKAS-----KSVLS 327

Query: 225 EVPEKAFATSPSK---------EDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETL 377
            + E  F T P K         ++ W     +P+KW+D+R  KK  + PDFKHKDT   L
Sbjct: 328 RLKELEFDTPPVKPKQTKDSKGDESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGVGL 387

Query: 378 WIMDIKTPCWVTPMLNNLQ-------EKEFSASPCLEGLWDSFFADPSKWVDNRSFKKSN 536
           W+ D  +P WV+  L  L+        K+   S   +  W+    +P+KW DNR  KK+ 
Sbjct: 388 WLRD--SPSWVSSRLKELEVESTSVKSKQAKDSKGSDESWNDLLQNPAKWWDNRLDKKNP 445

Query: 537 KYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
           K PDFKHKD  EALW++   +P WV+ +L  L
Sbjct: 446 KGPDFKHKDTGEALWLRG--SPSWVLPKLPPL 475



 Score =  104 bits (260), Expect = 2e-20
 Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
 Frame = +3

Query: 63  EDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVKPMLKE----- 227
           ++ W     +P+ W+D+R  KK ++ PDFK   TG+ LWL D  +P WV   LKE     
Sbjct: 350 DESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGVGLWLRD--SPSWVSSRLKELEVES 407

Query: 228 --VPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTP 401
             V  K    S   ++ W     +P+KW+D+R  KK+ K PDFKHKDT E LW+    +P
Sbjct: 408 TSVKSKQAKDSKGSDESWNDLLQNPAKWWDNRLDKKNPKGPDFKHKDTGEALWLRG--SP 465

Query: 402 CWVTPMLNNLQEKEFSA 452
            WV P L  L+ K+ SA
Sbjct: 466 SWVLPKLPPLKPKQQSA 482



 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 62/206 (30%), Positives = 90/206 (43%), Gaps = 13/206 (6%)
 Frame = +3

Query: 54  HSVEDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVKPMLKEVP 233
           H     W+     PS W      K+S K  DF+  + G             ++P LK+  
Sbjct: 217 HDTRKSWRDVINKPSQWKAVHSPKESPKNADFESKTEGE------------LQPGLKQST 264

Query: 234 EKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSN----KHPDFKHKDTHETLWIMDIKTP 401
             A   + S    W     DP KW+D R  K++     K+PDFK KD + ++W+      
Sbjct: 265 TSAKKYTGSLSSTWGDLLDDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKAS-- 322

Query: 402 CWVTPMLNNLQEKEFSASPCL---------EGLWDSFFADPSKWVDNRSFKKSNKYPDFK 554
                +L+ L+E EF   P           +  W+    +P+KW DNR  KK  + PDFK
Sbjct: 323 ---KSVLSRLKELEFDTPPVKPKQTKDSKGDESWNDLLQNPAKWWDNRVDKKYARAPDFK 379

Query: 555 HKDFREALWIKDIRTPVWVVVELSKL 632
           HKD    LW++D  +P WV   L +L
Sbjct: 380 HKDTGVGLWLRD--SPSWVSSRLKEL 403


>ref|NP_568639.1| protein OSB3 [Arabidopsis thaliana]
           gi|75328911|sp|Q8GWJ4.1|OSB3_ARATH RecName: Full=Protein
           OSB3, chloroplastic/mitochondrial; AltName:
           Full=Organellar single-stranded DNA-binding protein 3;
           Flags: Precursor gi|26452626|dbj|BAC43396.1| unknown
           protein [Arabidopsis thaliana]
           gi|28973013|gb|AAO63831.1| unknown protein [Arabidopsis
           thaliana] gi|30102734|gb|AAP21285.1| At5g44785
           [Arabidopsis thaliana] gi|110743279|dbj|BAE99530.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332007779|gb|AED95162.1| protein OSB3 [Arabidopsis
           thaliana]
          Length = 440

 Score =  121 bits (304), Expect = 1e-25
 Identities = 78/219 (35%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSK----YPDFKCMSTGMSLWLDDRRTPVWVKPMLKE---- 227
           WK    +P  W D R  K +      +PDFK    G+SLWL     P W    L+E    
Sbjct: 218 WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLWLST--APDWALLKLEELKFD 275

Query: 228 --VPEKAFATSPSK-EDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKT 398
             VP+     +  K E+ WK    +P KW D+R  K + K+PDFKHK+T E LW+ +  +
Sbjct: 276 VLVPKGNIKLNQLKGEESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--S 333

Query: 399 PCWVT---PMLNNLQEKEFSASPCL------------------EGLWDSFFADPSKWVDN 515
           P WV    P L   QE+ F ++                     E +W +   +PSKW DN
Sbjct: 334 PIWVLSKLPPLKKNQERPFMSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDN 393

Query: 516 RSFKKSNKYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
           R  K++ K PDFKHK+  EALWI D  +P W + +L  L
Sbjct: 394 RLDKRNPKGPDFKHKETGEALWIGD--SPTWALSKLPPL 430



 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
 Frame = +3

Query: 63  EDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVK---PMLKEVP 233
           E+ WK    +P  W D+R  K + KYPDFK   TG +LW+ +  +P+WV    P LK+  
Sbjct: 291 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKLPPLKKNQ 348

Query: 234 EKAFATSP------------------SKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHK 359
           E+ F ++                    +E++WK    +PSKW+D+R  K++ K PDFKHK
Sbjct: 349 ERPFMSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHK 408

Query: 360 DTHETLWIMDIKTPCWVTPMLNNLQEKE 443
           +T E LWI D  +P W    L  L++ +
Sbjct: 409 ETGEALWIGD--SPTWALSKLPPLKKNQ 434


>ref|NP_974885.1| protein OSB3 [Arabidopsis thaliana] gi|332007778|gb|AED95161.1|
           protein OSB3 [Arabidopsis thaliana]
          Length = 442

 Score =  120 bits (302), Expect = 2e-25
 Identities = 78/221 (35%), Positives = 106/221 (47%), Gaps = 34/221 (15%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSK----YPDFKCMSTGMSLWLDDRRTPVWVKPMLKE---- 227
           WK    +P  W D R  K +      +PDFK    G+SLWL     P W    L+E    
Sbjct: 218 WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLWLST--APDWALLKLEELKFD 275

Query: 228 --VPEKAFATSPSK---EDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDI 392
             VP+     +  K   E+ WK    +P KW D+R  K + K+PDFKHK+T E LW+ + 
Sbjct: 276 VLVPKGNIKLNQLKDIGEESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN- 334

Query: 393 KTPCWVT---PMLNNLQEKEFSASPCL------------------EGLWDSFFADPSKWV 509
            +P WV    P L   QE+ F ++                     E +W +   +PSKW 
Sbjct: 335 -SPIWVLSKLPPLKKNQERPFMSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWW 393

Query: 510 DNRSFKKSNKYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
           DNR  K++ K PDFKHK+  EALWI D  +P W + +L  L
Sbjct: 394 DNRLDKRNPKGPDFKHKETGEALWIGD--SPTWALSKLPPL 432



 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
 Frame = +3

Query: 63  EDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVK---PMLKEVP 233
           E+ WK    +P  W D+R  K + KYPDFK   TG +LW+ +  +P+WV    P LK+  
Sbjct: 293 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKLPPLKKNQ 350

Query: 234 EKAFATSP------------------SKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHK 359
           E+ F ++                    +E++WK    +PSKW+D+R  K++ K PDFKHK
Sbjct: 351 ERPFMSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHK 410

Query: 360 DTHETLWIMDIKTPCWVTPMLNNLQEKE 443
           +T E LWI D  +P W    L  L++ +
Sbjct: 411 ETGEALWIGD--SPTWALSKLPPLKKNQ 436


>ref|XP_002863546.1| hypothetical protein ARALYDRAFT_494502 [Arabidopsis lyrata subsp.
           lyrata] gi|297309381|gb|EFH39805.1| hypothetical protein
           ARALYDRAFT_494502 [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  120 bits (302), Expect = 2e-25
 Identities = 79/219 (36%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSK----YPDFKCMSTGMSLWLDDRRTPVWVKPMLKE---- 227
           WK    +P  W D R  K +      +PDFK    G+SLWL     P W  P LKE    
Sbjct: 218 WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLWLST--APDWALPKLKELEFD 275

Query: 228 --VPEKAFATSPSK-EDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKT 398
             VP+     +  K E+ WK    +P KW D+R  K + K+PDFKHK+T E LW+ +  +
Sbjct: 276 VLVPKGNIKLNQLKGEESWKDLVQNPDKWLDNRLDKTNVKYPDFKHKETGEALWMTN--S 333

Query: 399 PCWVT---PMLNNLQEKEFSAS--PCLE----------------GLWDSFFADPSKWVDN 515
           P WV    P L   QE+   ++  P LE                  W +   +PSKW DN
Sbjct: 334 PIWVLSKLPPLKKNQERPLMSNTVPQLELDVVVPNGNLTQLKREESWKNLVENPSKWWDN 393

Query: 516 RSFKKSNKYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
           R  K++ K PDFKHK+  E LWI +  +P W + +L  L
Sbjct: 394 RLDKRNPKAPDFKHKETGEVLWINN-NSPTWALSKLPPL 431



 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
 Frame = +3

Query: 3   WVTPMLNNLQSESFAIFHSV-------EDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMS 161
           W  P L  L+ +      ++       E+ WK    +P  W D+R  K + KYPDFK   
Sbjct: 264 WALPKLKELEFDVLVPKGNIKLNQLKGEESWKDLVQNPDKWLDNRLDKTNVKYPDFKHKE 323

Query: 162 TGMSLWLDDRRTPVWVK---PMLKEVPEKAFA------------------TSPSKEDLWK 278
           TG +LW+ +  +P+WV    P LK+  E+                     T   +E+ WK
Sbjct: 324 TGEALWMTN--SPIWVLSKLPPLKKNQERPLMSNTVPQLELDVVVPNGNLTQLKREESWK 381

Query: 279 TFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQEKE 443
               +PSKW+D+R  K++ K PDFKHK+T E LWI +  +P W    L  L++ +
Sbjct: 382 NLVENPSKWWDNRLDKRNPKAPDFKHKETGEVLWINN-NSPTWALSKLPPLKKNQ 435


>gb|AAM61481.1| unknown [Arabidopsis thaliana]
          Length = 440

 Score =  119 bits (298), Expect = 7e-25
 Identities = 77/219 (35%), Positives = 105/219 (47%), Gaps = 32/219 (14%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSK----YPDFKCMSTGMSLWLDDRRTPVWVKPMLKE---- 227
           WK    +P  W D R  K +      +PDFK    G+SLWL     P W    L+E    
Sbjct: 218 WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLWLST--APDWALLKLEELKFD 275

Query: 228 --VPEKAFATSPSK-EDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKT 398
             VP+     +  K E+ WK    +P KW D+R  K + K+PDFKHK+T E LW+ +  +
Sbjct: 276 VLVPKGNIKLNQLKGEESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--S 333

Query: 399 PCWVT---PMLNNLQEKEFSASPCL------------------EGLWDSFFADPSKWVDN 515
           P WV    P L   QE+   ++                     E +W +   +PSKW DN
Sbjct: 334 PIWVLSKLPPLKKNQERPLMSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDN 393

Query: 516 RSFKKSNKYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
           R  K++ K PDFKHK+  EALWI D  +P W + +L  L
Sbjct: 394 RLDKRNPKGPDFKHKETGEALWIGD--SPTWALSKLPPL 430



 Score = 96.7 bits (239), Expect = 5e-18
 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 21/148 (14%)
 Frame = +3

Query: 63  EDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVK---PMLKEVP 233
           E+ WK    +P  W D+R  K + KYPDFK   TG +LW+ +  +P+WV    P LK+  
Sbjct: 291 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKLPPLKKNQ 348

Query: 234 EKAFATSP------------------SKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHK 359
           E+   ++                    +E++WK    +PSKW+D+R  K++ K PDFKHK
Sbjct: 349 ERPLMSNKVSQLELDVEVPKGNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHK 408

Query: 360 DTHETLWIMDIKTPCWVTPMLNNLQEKE 443
           +T E LWI D  +P W    L  L++ +
Sbjct: 409 ETGEALWIGD--SPTWALSKLPPLKKNQ 434


>ref|XP_006393529.1| hypothetical protein EUTSA_v10011640mg [Eutrema salsugineum]
           gi|557090107|gb|ESQ30815.1| hypothetical protein
           EUTSA_v10011640mg [Eutrema salsugineum]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22
 Identities = 60/128 (46%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
 Frame = +3

Query: 258 SKED---LWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCWVTPMLNN 428
           SK D   LW  FFA+P +W+D R+ KK+ K PDFKHKDT+E  W +   TP WVT  L  
Sbjct: 190 SKNDEIHLWNAFFANPDEWWDKRRNKKNPKQPDFKHKDTNEAFW-LGSDTPVWVTRQLEL 248

Query: 429 LQEKEFSASPCLEGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIRTPVW 608
             +K            D FFA+P +W DNR  K + ++PDFKHKD  EALW+    TPVW
Sbjct: 249 FDQKR----------PDVFFANPQEWWDNRRDKLNPRWPDFKHKDTGEALWLHS-DTPVW 297

Query: 609 VVVELSKL 632
           V  +L  L
Sbjct: 298 VSRQLELL 305



 Score =  100 bits (248), Expect = 5e-19
 Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
 Frame = +3

Query: 30  QSESFAIFHSVED---LWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTP 200
           +SE+  I  S  D   LW  FFA+P  W+D R+ KK+ K PDFK   T  + WL    TP
Sbjct: 181 KSETDGIEESKNDEIHLWNAFFANPDEWWDKRRNKKNPKQPDFKHKDTNEAFWLGS-DTP 239

Query: 201 VWVKPMLKEVPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLW 380
           VWV   L+   +K       + D+   FFA+P +W+D+R+ K + + PDFKHKDT E LW
Sbjct: 240 VWVTRQLELFDQK-------RPDV---FFANPQEWWDNRRDKLNPRWPDFKHKDTGEALW 289

Query: 381 IMDIKTPCWVTPMLNNLQEKEFSAS 455
           +    TP WV+  L  L ++  + S
Sbjct: 290 LHS-DTPVWVSRQLELLDQRNANKS 313


>ref|XP_001703164.1| chloroplast-targeted RNA-binding protein [Chlamydomonas
           reinhardtii] gi|37545634|gb|AAM76787.1| RNA-binding
           protein RB38 [Chlamydomonas reinhardtii]
           gi|37723144|gb|AAP30010.1| 38 kDa RNA-binding protein
           [Chlamydomonas reinhardtii] gi|158270704|gb|EDO96540.1|
           chloroplast-targeted RNA-binding protein [Chlamydomonas
           reinhardtii]
          Length = 382

 Score =  110 bits (275), Expect = 3e-22
 Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 47/234 (20%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSKYPDF-KCMSTGMSLWLDDRRTPVWVKPMLKEVPEKAFA 248
           W+   ++P  W+D+R  K S + PDF +      +LWLD R  P WV  +L E+ E+  A
Sbjct: 141 WEALRSNPDEWYDNRNRKTSDRQPDFVRRDDRNSALWLDSRGVPEWVDELLAELDERQAA 200

Query: 249 TSPSK----------------------EDL--WKTFFADPSKWFDDRKIKKSNKHPDFKH 356
               +                      E+L  W++  A+P +W+D+R  K S++ PDF  
Sbjct: 201 RREQRVAERAAGGGDERQEGGGGRRGAEELANWESLRANPIEWYDNRSRKTSDRQPDFVR 260

Query: 357 KDTHET-LWIMDIKTPCWVTPMLNNL----------QEKEFSASPCLEGL---------- 473
           +D     LW+     P WV  +L  L          ++ E SA+P    L          
Sbjct: 261 RDDRRAALWLDSRGAPPWVGDLLAELDAAAQARRQQRQAERSAAPSTPELEAKRAAEAAN 320

Query: 474 WDSFFADPSKWVDNRSFKKSNKYPDFKHKDFR-EALWIKDIRTPVWVVVELSKL 632
           W+S  A+P  W DNR+ K++ K PDF+ KD R +ALW+     P W+   LS+L
Sbjct: 321 WESLRANPEAWFDNRNNKQTPKSPDFRKKDDRTQALWVTSYGAPEWLNELLSEL 374



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 22/146 (15%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSKYPDF-KCMSTGMSLWLDDRRTPVWVKPMLKEVPEKAFA 248
           W++  A+P  W+D+R  K S + PDF +      +LWLD R  P WV  +L E+   A A
Sbjct: 233 WESLRANPIEWYDNRSRKTSDRQPDFVRRDDRRAALWLDSRGAPPWVGDLLAELDAAAQA 292

Query: 249 ----------TSPSKEDL----------WKTFFADPSKWFDDRKIKKSNKHPDFKHKDTH 368
                      +PS  +L          W++  A+P  WFD+R  K++ K PDF+ KD  
Sbjct: 293 RRQQRQAERSAAPSTPELEAKRAAEAANWESLRANPEAWFDNRNNKQTPKSPDFRKKDDR 352

Query: 369 -ETLWIMDIKTPCWVTPMLNNLQEKE 443
            + LW+     P W+  +L+ L  ++
Sbjct: 353 TQALWVTSYGAPEWLNELLSELDARQ 378


>ref|XP_002327104.1| predicted protein [Populus trichocarpa]
           gi|566202259|ref|XP_006375003.1| hypothetical protein
           POPTR_0014s03490g [Populus trichocarpa]
           gi|550323317|gb|ERP52800.1| hypothetical protein
           POPTR_0014s03490g [Populus trichocarpa]
          Length = 371

 Score =  107 bits (267), Expect = 3e-21
 Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
 Frame = +3

Query: 69  LWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWL--DDRRTPVWVKPMLKEVPEKA 242
           LWK FF+ P  W+D+RK KK+SK PDFK   +G +LWL  DD   P+W+K  L+ +  KA
Sbjct: 224 LWKAFFSSPHEWWDNRKFKKNSKLPDFKHKISGDALWLRPDD---PLWIKTKLQLLDWKA 280

Query: 243 FATSPSKED-----LWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCW 407
                 +       LW+ FFA P +W+D+RK KK++  PDFKHKDT E LW+     P W
Sbjct: 281 GEHCEEERHKNHLYLWQVFFASPHEWWDNRKNKKNSASPDFKHKDTGEALWLSP-NDPPW 339

Query: 408 V 410
           V
Sbjct: 340 V 340



 Score =  104 bits (259), Expect = 2e-20
 Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
 Frame = +3

Query: 270 LWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQEKEFS 449
           LWK FF+ P +W+D+RK KK++K PDFKHK + + LW+     P W+   L  L  K  +
Sbjct: 224 LWKAFFSSPHEWWDNRKFKKNSKLPDFKHKISGDALWLRP-DDPLWIKTKLQLLDWK--A 280

Query: 450 ASPCLEG-------LWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIRTPVW 608
              C E        LW  FFA P +W DNR  KK++  PDFKHKD  EALW+     P W
Sbjct: 281 GEHCEEERHKNHLYLWQVFFASPHEWWDNRKNKKNSASPDFKHKDTGEALWLSP-NDPPW 339

Query: 609 VVVELSKL 632
           V  ++  L
Sbjct: 340 VKRQIQLL 347


>ref|XP_002529526.1| hypothetical protein RCOM_1716690 [Ricinus communis]
           gi|223531010|gb|EEF32864.1| hypothetical protein
           RCOM_1716690 [Ricinus communis]
          Length = 281

 Score =  102 bits (254), Expect = 9e-20
 Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
 Frame = +3

Query: 60  VEDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTPVWVKPMLKEVP-E 236
           VE  WK     P  W+D R    + K   F+    G  L++D   TP W++  L+ +  +
Sbjct: 65  VEQSWKDLLTSPHEWWDIRSQVDNPKGASFERKKNGELLYID-HATPKWIQEKLEGMAFD 123

Query: 237 KAFATSPSKEDL----------WKTFFADPSKWFDDRKIKKSN----KHPDFKHKDTHET 374
           K       K  +          W+   +DP +W+D R  K +     KHPDFK KD    
Sbjct: 124 KKTTVEGGKGSMIKNGDSVLNSWRELASDPKQWWDYRSSKLNGLVNPKHPDFKRKDGDVA 183

Query: 375 LWIMDIKTPCWVTPMLNNLQ-EKEFSASPCL-----EGLWDSFFADPSKWVDNRSFKKSN 536
           LW+   K P W+   L  L+ + +   S  +     +  W      P+KW DNR  KK+ 
Sbjct: 184 LWLN--KAPRWILSELEKLEFDVQIPKSKQVKQHKGDANWTDLVGHPNKWWDNRLNKKNE 241

Query: 537 KYPDFKHKDFREALWIKDIRTPVWVVVEL 623
           +YPDFKHK+    LW+ +  +P WV+ EL
Sbjct: 242 RYPDFKHKETGVGLWLSN--SPTWVLSEL 268



 Score = 76.6 bits (187), Expect = 5e-12
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
 Frame = +3

Query: 57  SVEDLWKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKPMLK 224
           SV + W+   +DP  W+D R  K +     K+PDFK     ++LWL+  + P W+   L+
Sbjct: 141 SVLNSWRELASDPKQWWDYRSSKLNGLVNPKHPDFKRKDGDVALWLN--KAPRWILSELE 198

Query: 225 ------EVPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIM 386
                 ++P+         +  W      P+KW+D+R  KK+ ++PDFKHK+T   LW+ 
Sbjct: 199 KLEFDVQIPKSKQVKQHKGDANWTDLVGHPNKWWDNRLNKKNERYPDFKHKETGVGLWLS 258

Query: 387 DIKTPCWV 410
           +  +P WV
Sbjct: 259 N--SPTWV 264


>ref|XP_002510278.1| conserved hypothetical protein [Ricinus communis]
           gi|223550979|gb|EEF52465.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 378

 Score = 99.8 bits (247), Expect = 6e-19
 Identities = 63/163 (38%), Positives = 85/163 (52%), Gaps = 24/163 (14%)
 Frame = +3

Query: 66  DLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWL--DDRRTPVWVKPMLK----E 227
           DLW+ FF  P  W+D RK K++ + PDFK    G +LWL  DD   P WVK  L+    E
Sbjct: 220 DLWQLFFCKPCEWWDKRKSKQNPELPDFKHKYNGENLWLRPDD---PPWVKRHLQLLDME 276

Query: 228 VPEKAFATSPSKED---------LWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLW 380
           + ++  A    K           LW+ FF++P +W+D+RK K + + PDFKHKDT E LW
Sbjct: 277 IAKQRQANGVGKSGMMRYSNRHHLWQVFFSNPHEWWDNRKNKTNRRSPDFKHKDTGEALW 336

Query: 381 IMDIKTPCWVTPMLNNL---------QEKEFSASPCLEGLWDS 482
           IM    P WV   L  L         +EK  S S   E ++D+
Sbjct: 337 IMR-DDPPWVKRQLKLLDFIMAEQCVREKVGSGSQLSEWIFDA 378



 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 54/136 (39%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
 Frame = +3

Query: 267 DLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQEKEF 446
           DLW+ FF  P +W+D RK K++ + PDFKHK   E LW+     P WV   L  L + E 
Sbjct: 220 DLWQLFFCKPCEWWDKRKSKQNPELPDFKHKYNGENLWLRPDDPP-WVKRHLQ-LLDMEI 277

Query: 447 SASPCLEG--------------LWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWI 584
           +      G              LW  FF++P +W DNR  K + + PDFKHKD  EALWI
Sbjct: 278 AKQRQANGVGKSGMMRYSNRHHLWQVFFSNPHEWWDNRKNKTNRRSPDFKHKDTGEALWI 337

Query: 585 KDIRTPVWVVVELSKL 632
                P WV  +L  L
Sbjct: 338 MR-DDPPWVKRQLKLL 352


>ref|XP_006398112.1| hypothetical protein EUTSA_v10000889mg [Eutrema salsugineum]
           gi|557099201|gb|ESQ39565.1| hypothetical protein
           EUTSA_v10000889mg [Eutrema salsugineum]
          Length = 437

 Score = 97.1 bits (240), Expect = 4e-18
 Identities = 64/196 (32%), Positives = 89/196 (45%), Gaps = 9/196 (4%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKPMLKEVPEK 239
           WK    +P  W D R  K S     ++PDFK     +SLWLD    P WV   L  +   
Sbjct: 207 WKHLLENPKEWVDHRGNKASGLVKPRHPDFKGKEGDLSLWLDS--APDWVLQKLNRLKFD 264

Query: 240 AFATSPSKEDL-----WKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETLWIMDIKTPC 404
            F      + L     WK    +P KW D R  K + K PDFKH++T E LW+ D  +P 
Sbjct: 265 VFVPKGKLKQLKGEESWKDLVENPDKWLDSRSTKTNVKAPDFKHRETGEALWMTD--SPT 322

Query: 405 WVTPMLNNLQEKEFSASPCLEGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWI 584
           WV   L  L++ +                +  + V+  + K     PDFKHK+  EALW+
Sbjct: 323 WVLSKLPPLKKTQ----------------ERPQIVNTTNVKA----PDFKHKESGEALWM 362

Query: 585 KDIRTPVWVVVELSKL 632
               +P WV+++L  L
Sbjct: 363 --TASPTWVLLKLPPL 376


>ref|XP_004513105.1| PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum]
          Length = 377

 Score = 97.1 bits (240), Expect = 4e-18
 Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 16/225 (7%)
 Frame = +3

Query: 6   VTPMLNNLQSESFAIFHSVEDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLD 185
           + P   ++ SE  +  H  E  WK    +PS W D +  K+S++   F+    G      
Sbjct: 165 INPSQKDMHSEQ-SEEHDKEKFWKDVLNNPSEWRDVQSTKESAESTAFERKPNGE----- 218

Query: 186 DRRTPVWVKPMLKEVP---EKAFATSPSKEDLWKTFFADPSKWFDDRKIKK----SNKHP 344
                  ++  +K+     EK +  S S    W     DP +W+D R  K+    S ++P
Sbjct: 219 -------IQSEVKQSMTGGEKKYPDSLSSS--WSNLLGDPKQWWDYRDSKRKELVSPRYP 269

Query: 345 DFKHKDTHETLWIMDIKTPCWVTPMLNNLQEKEFSASPCL---------EGLWDSFFADP 497
           DFK KD    +WI   + P WV   L+ LQE EF               +  W+    +P
Sbjct: 270 DFKRKDGSAPIWID--RAPKWV---LSRLQELEFDIPVVKPKQAKDGNGDQSWNDLVQNP 324

Query: 498 SKWVDNRSFKKSNKYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
           +KW DNR  KK+ + PDFKHK+  E LW+KD  +P WV+ +L  L
Sbjct: 325 AKWWDNRLNKKNERGPDFKHKETGEGLWLKD--SPSWVLPKLPPL 367


>ref|XP_004295481.1| PREDICTED: protein OSB3, chloroplastic/mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 440

 Score = 96.3 bits (238), Expect = 7e-18
 Identities = 76/229 (33%), Positives = 106/229 (46%), Gaps = 25/229 (10%)
 Frame = +3

Query: 21  NNLQSESFAIFHSVEDLWKTFFADPSIWFDDRKIKKSSKYPDFKCMSTGMSLWLDDRRTP 200
           N+  +ES    H    LWK   A P  W+  R  + S K   F+  S G    +DD  TP
Sbjct: 217 NDDMNESLKDLH----LWKDLLAKPHEWWAVRSKEGSPKAAAFERKSNGELCIIDDS-TP 271

Query: 201 VWVKPMLKEV-----PEKAFATSPSKED------LWKTFFADPSKWFD--DRKIKKSNK- 338
            W++  L+ +     P    + + S+ED       W+    +  +W D  D+K+ K  K 
Sbjct: 272 EWIQHKLESLTFDQKPMSHCSETSSREDGNSTVGTWEDLLDNSKQWKDYRDQKLNKLVKE 331

Query: 339 -HPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQEKEFSASPCLEGL----------WDSF 485
            HPDFK KD   +LW+   K P WV   L+ L+ KEF   P L+            W   
Sbjct: 332 NHPDFKRKDGGHSLWLN--KVPKWV---LSELKGKEFDV-PVLKSKQANEGRGDKSWKDL 385

Query: 486 FADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIRTPVWVVVELSKL 632
             +P KW DNR  K + K PDFKHK+  EALW+ +  +P W +  L  L
Sbjct: 386 VENPDKWWDNRLQKWNAKGPDFKHKETGEALWLTN--SPGWAIPMLPPL 432



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
 Frame = +3

Query: 12  PMLNNLQSESFAIFHSVEDLWKTFFADPSIWFD--DRKIKKSSK--YPDFKCMSTGMSLW 179
           PM +  ++ S    +S    W+    +   W D  D+K+ K  K  +PDFK    G SLW
Sbjct: 287 PMSHCSETSSREDGNSTVGTWEDLLDNSKQWKDYRDQKLNKLVKENHPDFKRKDGGHSLW 346

Query: 180 LDDRRTPVWVKPMLK----EVP--EKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKH 341
           L+  + P WV   LK    +VP  +   A     +  WK    +P KW+D+R  K + K 
Sbjct: 347 LN--KVPKWVLSELKGKEFDVPVLKSKQANEGRGDKSWKDLVENPDKWWDNRLQKWNAKG 404

Query: 342 PDFKHKDTHETLWIMDIKTPCWVTPMLNNLQEKE 443
           PDFKHK+T E LW+ +  +P W  PML  L+ ++
Sbjct: 405 PDFKHKETGEALWLTN--SPGWAIPMLPPLKTQQ 436


>ref|XP_002953456.1| hypothetical protein VOLCADRAFT_82305 [Volvox carteri f.
           nagariensis] gi|300261215|gb|EFJ45429.1| hypothetical
           protein VOLCADRAFT_82305 [Volvox carteri f. nagariensis]
          Length = 413

 Score = 93.6 bits (231), Expect = 4e-17
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 44/231 (19%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSKYPDF-KCMSTGMSLWLDDRRTPVWVKPMLKEVPEKAFA 248
           W    A+P+ W+D+RK K + K PDF +     +++W+D R TP W +  L E+  +   
Sbjct: 44  WDALRANPNEWYDNRKRKTNPKAPDFVRKDDRSVAIWIDGRDTPGWYEEFLDELDSRQGG 103

Query: 249 TS------------------PSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHE- 371
                                ++   W++   +P +WFD+R  K + + PDF+ KD    
Sbjct: 104 QQRGDRFGGDRPGGDRNDRRAAEMANWESLRNNPEEWFDNRSRKTNPRAPDFRRKDDRAV 163

Query: 372 TLWIMDIKTPCWVTPMLNNLQEKEFSASPCLE-----------------------GLWDS 482
            LWI     P W+  +L+ L  ++   S                             WDS
Sbjct: 164 ALWIDSYGAPEWLDDLLHELDARQSQRSSGYSQQQQGGYQQAPDQYVEDKRAAEMAKWDS 223

Query: 483 FFADPSKWVDNRSFKKSNKYPDFKHKDFRE-ALWIKDIRTPVWVVVELSKL 632
             ++P  W DNR  K + K PDFK K  R  ALW+   + P ++   L++L
Sbjct: 224 LRSNPELWFDNRRTKTNPKAPDFKLKSDRSVALWLSSYQLPDYLDDLLAEL 274



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 72/252 (28%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSKYPDFKCMST-GMSLWLDDRRTPVWVKPMLKEVPEK--- 239
           W++   +P  WFD+R  K + + PDF+      ++LW+D    P W+  +L E+  +   
Sbjct: 130 WESLRNNPEEWFDNRSRKTNPRAPDFRRKDDRAVALWIDSYGAPEWLDDLLHELDARQSQ 189

Query: 240 -----------AFATSPSK--EDL-------WKTFFADPSKWFDDRKIKKSNKHPDFKHK 359
                       +  +P +  ED        W +  ++P  WFD+R+ K + K PDFK K
Sbjct: 190 RSSGYSQQQQGGYQQAPDQYVEDKRAAEMAKWDSLRSNPELWFDNRRTKTNPKAPDFKLK 249

Query: 360 -DTHETLWIMDIKTPCWVTPMLNNL----------------QEKEFSASP---------- 458
            D    LW+   + P ++  +L  L                Q++++   P          
Sbjct: 250 SDRSVALWLSSYQLPDYLDDLLAELDARYDQRMNGQQQYYQQQQDYQPYPEQQQGYADYQ 309

Query: 459 --------------------CLEGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFRE-A 575
                                 +  W+S   +P +W DNR  K++ K PDF++KD R   
Sbjct: 310 QQQQPQQSYQQSDSREAKIAQEQANWESLRNNPEQWFDNRYTKQNPKAPDFRNKDDRSLV 369

Query: 576 LWIKDIRTPVWV 611
           LW+     P W+
Sbjct: 370 LWLTSRSAPEWI 381



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 48/171 (28%)
 Frame = +3

Query: 72  WKTFFADPSIWFDDRKIKKSSKYPDFKCMST-GMSLWLDDRRTPVWVKPMLKEV------ 230
           W +  ++P +WFD+R+ K + K PDFK  S   ++LWL   + P ++  +L E+      
Sbjct: 221 WDSLRSNPELWFDNRRTKTNPKAPDFKLKSDRSVALWLSSYQLPDYLDDLLAELDARYDQ 280

Query: 231 ---------------------------------PEKAFATSPSKEDL-------WKTFFA 290
                                            P++++  S S+E         W++   
Sbjct: 281 RMNGQQQYYQQQQDYQPYPEQQQGYADYQQQQQPQQSYQQSDSREAKIAQEQANWESLRN 340

Query: 291 DPSKWFDDRKIKKSNKHPDFKHKDTHE-TLWIMDIKTPCWVTPMLNNLQEK 440
           +P +WFD+R  K++ K PDF++KD     LW+     P W+  +L  L  +
Sbjct: 341 NPEQWFDNRYTKQNPKAPDFRNKDDRSLVLWLTSRSAPEWINELLPELDAR 391


>ref|XP_006282647.1| hypothetical protein CARUB_v10004988mg, partial [Capsella rubella]
           gi|482551352|gb|EOA15545.1| hypothetical protein
           CARUB_v10004988mg, partial [Capsella rubella]
          Length = 394

 Score = 92.4 bits (228), Expect = 9e-17
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
 Frame = +3

Query: 48  IFHSVEDLWKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKP 215
           +     D W     +P  W+D R+ K +     ++PDFK   + +SLWL+  + P WV P
Sbjct: 252 VMDEASDSWNRLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSLSLWLN--KAPNWVLP 309

Query: 216 MLKE------VPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETL 377
            L+       VP+         E+ WK    +P KW+D+R  K++ K PDFKHK+T E L
Sbjct: 310 KLEGLEFDVLVPKARIVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEAL 369

Query: 378 WIMDIKTPCWVTPMLNNLQEKEFS 449
           W+ +  +P W+ P L  +++K+ S
Sbjct: 370 WLNE--SPTWLLPKLPPVKKKQES 391



 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
 Frame = +3

Query: 267 DLWKTFFADPSKWFDDRKIKKSN----KHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQ 434
           D W     +P +W+D R+ K +     +HPDFK KD+  +LW+   K P WV P L  L+
Sbjct: 258 DSWNRLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSLSLWLN--KAPNWVLPKLEGLE 315

Query: 435 EKEFSASPCL------EGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIR 596
                    +      E  W     +P KW DNR  K++ K PDFKHK+  EALW+ +  
Sbjct: 316 FDVLVPKARIVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNE-- 373

Query: 597 TPVWVVVEL 623
           +P W++ +L
Sbjct: 374 SPTWLLPKL 382


>ref|XP_002869952.1| hypothetical protein ARALYDRAFT_492872 [Arabidopsis lyrata subsp.
           lyrata] gi|297315788|gb|EFH46211.1| hypothetical protein
           ARALYDRAFT_492872 [Arabidopsis lyrata subsp. lyrata]
          Length = 365

 Score = 92.4 bits (228), Expect = 9e-17
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
 Frame = +3

Query: 48  IFHSVEDLWKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKP 215
           +     D W     +P  W+D R+ K +     ++PDFK   + +SLWL+  + P WV P
Sbjct: 224 VIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSLSLWLN--KAPNWVLP 281

Query: 216 MLKE------VPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETL 377
            L+       VP+         E+ WK    +P KW+D+R  K++ K PDFKHK+T E L
Sbjct: 282 KLEGLKFDVLVPKGRVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEAL 341

Query: 378 WIMDIKTPCWVTPMLNNLQEKEFS 449
           W+ +  +P WV P L  +++K+ S
Sbjct: 342 WLNE--SPTWVLPKLPPVKKKQES 363



 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
 Frame = +3

Query: 267 DLWKTFFADPSKWFDDRKIKKSN----KHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQ 434
           D W     +P +W+D R+ K +     +HPDFK KD+  +LW+   K P WV P L  L+
Sbjct: 230 DSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSLSLWLN--KAPNWVLPKLEGLK 287

Query: 435 EKEFSASPCL------EGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIR 596
                    +      E  W     +P KW DNR  K++ K PDFKHK+  EALW+ +  
Sbjct: 288 FDVLVPKGRVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNE-- 345

Query: 597 TPVWVVVEL 623
           +P WV+ +L
Sbjct: 346 SPTWVLPKL 354


>ref|NP_001031674.1| plastid transcriptionally active 9 [Arabidopsis thaliana]
           gi|332658861|gb|AEE84261.1| plastid transcriptionally
           active 9 [Arabidopsis thaliana]
          Length = 371

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
 Frame = +3

Query: 48  IFHSVEDLWKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKP 215
           +     D W     +P  W+D R+ K +     ++PDFK   +  SLWL+  + P WV P
Sbjct: 229 VIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWLN--KAPNWVLP 286

Query: 216 MLKE------VPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETL 377
            L+       VP+         E+ WK    +P KW+D+R  K++ K PDFKHK+T E L
Sbjct: 287 KLEGLEFDVLVPKARVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEAL 346

Query: 378 WIMDIKTPCWVTPMLNNLQEKEFS 449
           W+ +  +P WV P L  +++K+ S
Sbjct: 347 WLNE--SPTWVLPKLPPVKKKQES 368



 Score = 86.3 bits (212), Expect = 7e-15
 Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
 Frame = +3

Query: 267 DLWKTFFADPSKWFDDRKIKKSN----KHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQ 434
           D W     +P +W+D R+ K +     +HPDFK KD+  +LW+   K P WV P L  L+
Sbjct: 235 DSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWLN--KAPNWVLPKLEGLE 292

Query: 435 EKEFSASPCL------EGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIR 596
                    +      E  W     +P KW DNR  K++ K PDFKHK+  EALW+ +  
Sbjct: 293 FDVLVPKARVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNE-- 350

Query: 597 TPVWVVVEL 623
           +P WV+ +L
Sbjct: 351 SPTWVLPKL 359


>dbj|BAC42861.1| unknown protein [Arabidopsis thaliana]
          Length = 371

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
 Frame = +3

Query: 48  IFHSVEDLWKTFFADPSIWFDDRKIKKSS----KYPDFKCMSTGMSLWLDDRRTPVWVKP 215
           +     D W     +P  W+D R+ K +     ++PDFK   +  SLWL+  + P WV P
Sbjct: 229 VIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWLN--KAPNWVLP 286

Query: 216 MLKE------VPEKAFATSPSKEDLWKTFFADPSKWFDDRKIKKSNKHPDFKHKDTHETL 377
            L+       VP+         E+ WK    +P KW+D+R  K++ K PDFKHK+T E L
Sbjct: 287 KLEGLEFDVLVPKARVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEAL 346

Query: 378 WIMDIKTPCWVTPMLNNLQEKEFS 449
           W+ +  +P WV P L  +++K+ S
Sbjct: 347 WLNE--SPTWVLPKLPPVKKKQES 368



 Score = 86.3 bits (212), Expect = 7e-15
 Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
 Frame = +3

Query: 267 DLWKTFFADPSKWFDDRKIKKSN----KHPDFKHKDTHETLWIMDIKTPCWVTPMLNNLQ 434
           D W     +P +W+D R+ K +     +HPDFK KD+  +LW+   K P WV P L  L+
Sbjct: 235 DSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWLN--KAPNWVLPKLEGLE 292

Query: 435 EKEFSASPCL------EGLWDSFFADPSKWVDNRSFKKSNKYPDFKHKDFREALWIKDIR 596
                    +      E  W     +P KW DNR  K++ K PDFKHK+  EALW+ +  
Sbjct: 293 FDVLVPKARVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNE-- 350

Query: 597 TPVWVVVEL 623
           +P WV+ +L
Sbjct: 351 SPTWVLPKL 359