BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00021411
         (420 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]               81   1e-13
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               81   2e-13
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]               81   2e-13
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]               79   6e-13
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]    78   1e-12
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...    78   1e-12
gb|AFB73911.1| polyprotein [Citrus sinensis]                           78   1e-12
gb|AFB73912.1| polyprotein [Citrus sinensis]                           77   2e-12
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...    77   2e-12
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         77   2e-12
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...    76   4e-12
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         76   4e-12
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                76   4e-12
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 76   4e-12
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                   76   5e-12
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]    76   5e-12
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...    76   5e-12
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    75   1e-11
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      75   1e-11
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    75   1e-11

>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETL----ATSSY 147
           C+ C   GH+KK+C++ K    N  K +E S +Q  G VA T  + DGE L    ATSS 
Sbjct: 230 CYGCGMKGHVKKECWNIKK---NGEKNSEASTSQ--GCVAST--SDDGEILYSEAATSSK 282

Query: 146 SAE---NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
                 ++W++DSGA++H+ PH+D+F +Y+ +  G V++G+D+  +IAG+G
Sbjct: 283 GERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVG 333


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETL----ATSSY 147
           C+ C   GH+KK+C++ K    N  K +E S +Q  G VA T  + DGE L    ATSS 
Sbjct: 230 CYGCGMKGHVKKECWNIKK---NGEKNSEASTSQ--GCVAST--SDDGEILYSEAATSSK 282

Query: 146 SAE---NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
                 ++W++DSGA++H+ PH+D+F +Y+ +  G V++G+D+  +IAG+G
Sbjct: 283 GERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVG 333


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETL----ATSSY 147
           C+ C   GH+KK+C++ K    N  K +E S +Q  G VA T  + DGE L    ATSS 
Sbjct: 230 CYGCGMKGHVKKECWNIKK---NGEKNSEASTSQ--GCVAST--SDDGEILYSEAATSSK 282

Query: 146 SAE---NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
                 ++W++DSGA++H+ PH+D+F +Y+ +  G V++G+D+  +IAG+G
Sbjct: 283 GERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVG 333


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 43/111 (38%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETL----ATSSY 147
           C+ C   GH+KK+C++ K    N  K +E + +Q  G VA T  + DGE L    ATSS 
Sbjct: 230 CYGCGMKGHVKKECWNNKK---NGEKNSEATTSQ--GCVAST--SDDGEILYSEAATSSE 282

Query: 146 SAE---NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
                 ++W++DSGA++H+ PH+D+F +Y+ +  G V++G+D+  +IAG+G
Sbjct: 283 GERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVG 333


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDG-ETLATSSYSAE 138
           CF C+K GH KKDC     K  N  K+T N     +GD AV L   D  + L  +   + 
Sbjct: 271 CFICHKEGHFKKDC---SDKRQNTIKKTVN-----EGDAAVILDGYDSAKVLNVAEMDSG 322

Query: 137 NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAG 9
             W+LDSG SFH+CP K +F  +KE   G V LG++  CKI G
Sbjct: 323 KEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILG 365


>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 40/104 (38%), Positives = 63/104 (60%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETLATSSYSAEN 135
           C +C++ GH KKDC   + K   E    + +V +   DV   +  +   +L+ SSY  E 
Sbjct: 210 CAFCHEKGHWKKDCPKLQKK---EKVPQDANVAECKSDVESDISLI--VSLSASSYPDE- 263

Query: 134 IWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
            W+LDSG ++H+CP +D+F  ++E+  GVV++G+D  CK AGIG
Sbjct: 264 -WILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTAGIG 306


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETLATSSYSAE- 138
           C+ C K GH+KK+C+   ++   EGKE E S  Q  G VA T  + DGE L + + +   
Sbjct: 230 CYNCGKKGHVKKECW--SNQKRREGKEPETSNAQ--GCVAST--SDDGEILYSEATTVSE 283

Query: 137 ------NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
                 ++W++DSGA++H+   +++F TY+ +  G V++G+D+  +IAGIG
Sbjct: 284 GRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIG 334


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQ-------TDGDVAVTLCTVDGETLAT 156
           C+ C K GH+KK+C+   ++   EGKE E+S  Q        DG++  +  T+  E    
Sbjct: 230 CYNCGKKGHVKKECW--SNQKRREGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRKR 287

Query: 155 SSYSAENIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
            S    ++W++DSGA++H+   +++F TY+ +  G V++G+D+  +IAGIG
Sbjct: 288 LS----DVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIG 334


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAV-TLCTVDGETLATSS--YS 144
           C YC + GH   DC+  ++K  ++G        +  G  AV T    D E L   +    
Sbjct: 178 CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQ 237

Query: 143 AENIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
             + W+LD+G ++H+CP++D+F TY+ V+ G V +GD+  CK+AG+G
Sbjct: 238 TSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVG 284


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 39/103 (37%), Positives = 54/103 (52%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETLATSSYSAEN 135
           CFYC K GH  +DC+  K K + E K  + +V   DG           + L  S+ + + 
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQE-KSGDAAVASDDGSDGYQ----SADLLVASNSNTKG 290

Query: 134 IWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGI 6
            WV+DSG SFH+CP K  F  Y+ V  G V +G++  C I GI
Sbjct: 291 QWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGI 333


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 35/104 (33%), Positives = 58/104 (55%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETLATSSYSAEN 135
           C+YC K GH+KKDCY  K KM +EG+     + +           V  E L+ +    ++
Sbjct: 256 CWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEK---------LVFSEALSVNEQMVKD 306

Query: 134 IWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
           +W+LDSG + H+   +D+F +++E  N  + LGDD++ +  G G
Sbjct: 307 LWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQG 350


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAV-TLCTVDGETLATSSYSAE 138
           C YC + GH    C+  + K    GK       + +G  AV T    D E L   +  A+
Sbjct: 236 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 137 NI--WVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
               W+LD+  ++H+CP++D+F TY+ V+ G V +GDD  C++AGIG
Sbjct: 296 TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIG 342


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAV-TLCTVDGETLATSSYSAE 138
           C YC + GH    C+  + K    GK       + +G  AV T    D E L   +  A+
Sbjct: 53  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 112

Query: 137 NI--WVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
               W+LD+  ++H+CP++D+F TY+ V+ G V +GDD  C++AGIG
Sbjct: 113 TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIG 159


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAV-TLCTVDGETLATSSYSAE 138
           C YC + GH    C+  + K    GK       + +G  AV T    D E L   +  A+
Sbjct: 221 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQ 280

Query: 137 NI--WVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
               W+LD+  ++H+CP++D+F TY+ V+ G V +GDD  C++AGIG
Sbjct: 281 TSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIG 327


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGETL---ATSSYS 144
           C+ C K GH+KKDC+   +K + E K +E S +Q  G VA T  + DGE L   A  S  
Sbjct: 230 CYNCGKRGHLKKDCW--SNKKSGE-KSSEASTSQ--GCVAST--SDDGEVLYSEAAVSTK 282

Query: 143 AEN----IWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
            +N    +W++DSGA++H+ P +D+F TY+ V  G V +G+D+  +I GIG
Sbjct: 283 GKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIG 333


>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAVTLCTVDGE-TLATSSYSAE 138
           CF C+K GH KKDC   +    N  K+T N     +GD  + L   D    L  +   + 
Sbjct: 228 CFICHKEGHFKKDCPDMRQ---NTXKKTMN-----EGDATMILDGYDNAGVLNVAEVDSG 279

Query: 137 NIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
             W+LDSG SFH+CP K +F  +KE   G V LG++  CKI G G
Sbjct: 280 KEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTG 324


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHF----KSKMANEGKETENSVNQTDGDVAVTLCTVDGETLATSSY 147
           C+ C K GH KK CY +    KSK         +    T+      +     ETL  +  
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTD- 279

Query: 146 SAENIWVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
           S  N WVLD+G SFH+ P KD+F+ +KE+ +G V +G+D    + GIG
Sbjct: 280 SIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIG 327


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVA-VTLCTVDGETLATSSYSAE 138
           C YC + GH   +C+  + K     K       + +G  A VT    D E L   +  A+
Sbjct: 178 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKSDAELLVAYAGCAQ 237

Query: 137 NI--WVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
               W+LD+  ++H+CP++D+F TY+ V+ G V +GDD  C++AGIG
Sbjct: 238 TSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIG 284


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAV-TLCTVDGETLATSSYSAE 138
           C YC + GH   +C+  + K    GK       + +G  AV T    D E L   +  A+
Sbjct: 271 CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQ 330

Query: 137 NI--WVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
               W+LD+  ++H+CP++D+F TY+ ++ G V +GDD  C++AGIG
Sbjct: 331 TSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIG 377


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
 Frame = -2

Query: 314 CFYCNKPGHIKKDCYHFKSKMANEGKETENSVNQTDGDVAV-TLCTVDGETLATSSYSAE 138
           C YC + GH   +C+  + K    GK       + +G  AV T    D E L   +  A+
Sbjct: 271 CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQ 330

Query: 137 NI--WVLDSGASFHVCPHKDFFRTYKEVKNGVVHLGDDYTCKIAGIG 3
               W+LD+  ++H+CP++D+F TY+ ++ G V +GDD  C++AGIG
Sbjct: 331 TSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIG 377