BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00020932
         (606 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   111   1e-22
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   111   2e-22
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   109   7e-22
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su...   108   9e-22
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   108   1e-21
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su...   108   1e-21
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   108   1e-21
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su...   108   1e-21
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   107   3e-21
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su...   107   3e-21
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub...   106   6e-21
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub...   106   6e-21
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub...   106   6e-21
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe...   106   6e-21
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...   105   1e-20
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...   102   6e-20
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub...   102   6e-20
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...   102   6e-20
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub...   101   1e-19
ref|XP_006857929.1| hypothetical protein AMTR_s00069p00150990 [A...   101   2e-19

>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
           vesca subsp. vesca]
          Length = 1438

 Score =  111 bits (278), Expect = 1e-22
 Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 4/204 (1%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   SF  G  L  DDRT+A + L+ F    RG        V D +KI       T
Sbjct: 219 HRVTEVMYSFNNGQSLMFDDRTRAYRKLVDF----RGTANELGSRVLDCLKISKINKEKT 274

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
                     D+  +E     +S  S  SGL+W+KD  LGKRSD   R VV+GDPN++L 
Sbjct: 275 G--------RDSISVEQQKIKDSP-SRTSGLRWIKDVVLGKRSDHCFRMVVVGDPNIKLS 325

Query: 362 EIGINRELAERLTVSETVNRFNRRKIREYNNHRI---TKGLSHNTRRNGVLSRGMDASQL 532
           EIGI R +AE++ +SE +N++N  K+  +   R+    +G  H  RRN  L R     +L
Sbjct: 326 EIGIPRHIAEKMQISENLNQYNFEKLFVFCQLRLGPDGRGDIH-VRRNDSLVRIRKPEEL 384

Query: 533 KIGDLYERQITDGDLIIINRTPTL 604
           ++GD+  R +++GD+++INR P++
Sbjct: 385 EMGDIIYRALSNGDVVLINRPPSI 408


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  111 bits (277), Expect = 2e-22
 Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 2/202 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   +F  G  L  DDRT+A K ++ F    +   FR  +    T KI        
Sbjct: 235 HRVTEVTHAFSNGQRLVFDDRTRAYKKMVDFRGIAKELSFRV-LDCLKTSKINPDKSVNN 293

Query: 182 NDYFQCS-KLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQL 358
           +DY     K++D+            +S  SGL+W+KD  LGKR+D S R VV+GDPN++ 
Sbjct: 294 DDYMALQRKMNDS------------SSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKF 341

Query: 359 DEIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKI 538
            EIGI   +AERL +SE +  +N  K+      R+ +    + RR G L R     +L+I
Sbjct: 342 SEIGIPCPIAERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRI 401

Query: 539 GDLYERQITDGDLIIINRTPTL 604
           GD+  R + DGD ++INR P++
Sbjct: 402 GDIIYRPLNDGDTVLINRPPSI 423


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  109 bits (272), Expect = 7e-22
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 8/208 (3%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   SF  G  L  D+RT+A K ++ F    RG        V D +KI  ++  + 
Sbjct: 240 HRVTEMAHSFSNGQRLIFDERTRAYKKVVDF----RGTANELGSRVLDCLKISKAIYNIF 295

Query: 182 N------DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGD 343
                  +Y+Q  K+ DT             +  SGL+W+KD  LGKRSD   R VV+GD
Sbjct: 296 VFCLNHVNYYQ-KKIKDTA------------TSSSGLRWIKDVVLGKRSDHCFRMVVVGD 342

Query: 344 PNLQLDEIGINRELAERLTVSETVNRFNRRKI-REYNNHRITKGLSHNTRRNGVLSRGMD 520
           PN++L EIGI   +AERL +SE ++ +N +K+      H + KG  +  RR G L R  +
Sbjct: 343 PNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIY-VRREGRLVRVRN 401

Query: 521 ASQLKIGDLYERQITDGDLIIINRTPTL 604
             +L +GD   R + DGD++++NR P++
Sbjct: 402 VLELNMGDTIYRPLADGDIVLVNRPPSI 429


>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
           max]
          Length = 1369

 Score =  108 bits (271), Expect = 9e-22
 Identities = 77/201 (38%), Positives = 108/201 (53%), Gaps = 1/201 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   +   GS L+ DDRT++ K L+ F    RG        V D ++I     +L 
Sbjct: 139 HRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTPNELSSRVLDCLRI----SKLN 190

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
            D    S  +D   I+    GE+   + SGL+W+KD  LGKR+D SLR VV+GDP+L+L 
Sbjct: 191 PDKTPNSIFAD---IQQRKIGENA-CNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDLELS 246

Query: 362 EIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIG 541
           E+GI   +AE L VSE VNR NR K+      R+ +    +  RNG          L+IG
Sbjct: 247 EVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDLQIG 306

Query: 542 DLYERQITDGDLIIINRTPTL 604
           D   R + DGD ++INR P++
Sbjct: 307 DKIYRPLADGDKVLINRPPSI 327


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
           [Glycine max]
          Length = 1381

 Score =  108 bits (270), Expect = 1e-21
 Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 2/202 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   +   GS L+ DDRT++ K L+ F    RG        V D ++I     +L 
Sbjct: 148 HRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSRVLDCLRI----SKLN 199

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
            D    S  +D   I+    GE+   + SGL+W+KD  LGKR+D S R VV+GDP+L+L 
Sbjct: 200 PDKTPNSIFAD---IQQRKIGENA-FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELS 255

Query: 362 EIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTRRNGVLSRGMDASQLKI 538
           EIGI   +AE L VSE VNR NR K+      H + KG   N  R G +        L+I
Sbjct: 256 EIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVCRKGSIVHLYKKEDLQI 314

Query: 539 GDLYERQITDGDLIIINRTPTL 604
           GD + R + DGD ++INR P++
Sbjct: 315 GDKFYRPLADGDKVLINRPPSI 336


>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
           [Glycine max]
          Length = 1455

 Score =  108 bits (270), Expect = 1e-21
 Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 2/202 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   +   GS L+ DDRT++ K L+ F    RG        V D ++I     +L 
Sbjct: 225 HRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSRVLDCLRI----SKLN 276

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
            D    S  +D   I+    GE+   + SGL+W+KD  LGKR+D S R VV+GDP+L+L 
Sbjct: 277 PDKTPNSIFAD---IQQRKIGENA-FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELS 332

Query: 362 EIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTRRNGVLSRGMDASQLKI 538
           EIGI   +AE L VSE VNR NR K+      H + KG   N  R G +        L+I
Sbjct: 333 EIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVCRKGSIVHLYKKEDLQI 391

Query: 539 GDLYERQITDGDLIIINRTPTL 604
           GD + R + DGD ++INR P++
Sbjct: 392 GDKFYRPLADGDKVLINRPPSI 413


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Glycine max]
          Length = 1457

 Score =  108 bits (270), Expect = 1e-21
 Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 2/202 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   +   GS L+ DDRT++ K L+ F    RG        V D ++I     +L 
Sbjct: 225 HRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSRVLDCLRI----SKLN 276

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
            D    S  +D   I+    GE+   + SGL+W+KD  LGKR+D S R VV+GDP+L+L 
Sbjct: 277 PDKTPNSIFAD---IQQRKIGENA-FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELS 332

Query: 362 EIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTRRNGVLSRGMDASQLKI 538
           EIGI   +AE L VSE VNR NR K+      H + KG   N  R G +        L+I
Sbjct: 333 EIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVCRKGSIVHLYKKEDLQI 391

Query: 539 GDLYERQITDGDLIIINRTPTL 604
           GD + R + DGD ++INR P++
Sbjct: 392 GDKFYRPLADGDKVLINRPPSI 413


>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
           [Glycine max]
          Length = 1458

 Score =  108 bits (270), Expect = 1e-21
 Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 2/202 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E   +   GS L+ DDRT++ K L+ F    RG        V D ++I     +L 
Sbjct: 225 HRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSRVLDCLRI----SKLN 276

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
            D    S  +D   I+    GE+   + SGL+W+KD  LGKR+D S R VV+GDP+L+L 
Sbjct: 277 PDKTPNSIFAD---IQQRKIGENA-FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELS 332

Query: 362 EIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTRRNGVLSRGMDASQLKI 538
           EIGI   +AE L VSE VNR NR K+      H + KG   N  R G +        L+I
Sbjct: 333 EIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVCRKGSIVHLYKKEDLQI 391

Query: 539 GDLYERQITDGDLIIINRTPTL 604
           GD + R + DGD ++INR P++
Sbjct: 392 GDKFYRPLADGDKVLINRPPSI 413


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 1687

 Score =  107 bits (267), Expect = 3e-21
 Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 1/201 (0%)
 Frame = +2

Query: 5   HRINE-RHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E  H+   G  L+ D+RT+A K L+ F    RG        V D ++   +   + 
Sbjct: 388 HRVTEVPHRLSGGYPLSFDNRTRACKKLVDF----RGTANELSSRVLDCLRFSKASFSVI 443

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
           N     + ++    ++    GE+   + SGL+W+KD  LGKR+D + R VV+GDP+L+L 
Sbjct: 444 NP--DRTPVNIFTELQQRKVGENA-CNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELS 500

Query: 362 EIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIG 541
           EIGI  ++AE L VSE VNR NR+ +      R+ +    N RRNG          L+IG
Sbjct: 501 EIGIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKEDLQIG 560

Query: 542 DLYERQITDGDLIIINRTPTL 604
           D++ R + DGD ++INR P++
Sbjct: 561 DIFYRPLVDGDKVLINRPPSI 581


>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
           brachyantha]
          Length = 1386

 Score =  107 bits (266), Expect = 3e-21
 Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 3/203 (1%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E       G  L  DDRTKA K ++    RI  ++      VF +  +       T
Sbjct: 167 HRVAEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVFASSVV-------T 219

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHS-GLKWLKDTALGKRSDFSLRAVVIGDPNLQL 358
           +   +C K S        + GES  S  + G KWLKD  L KRSD + R++++GDP + L
Sbjct: 220 SRVMECMKSSKL--YAKKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIMVGDPKISL 277

Query: 359 DEIGINRELAERLTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLK 535
           +EIGI  +LA  L VSE V+ +N   I  + N H +TK +    RRNG L     A++L+
Sbjct: 278 NEIGIPMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEVL-LVRRNGKLIFVRKANKLQ 336

Query: 536 IGDLYERQITDGDLIIINRTPTL 604
           IGD+  R + DGDL+++NR P++
Sbjct: 337 IGDIAYRLLQDGDLVLVNRPPSV 359


>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
           [Setaria italica]
          Length = 1362

 Score =  106 bits (264), Expect = 6e-21
 Identities = 68/200 (34%), Positives = 100/200 (50%)
 Frame = +2

Query: 5   HRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN 184
           HR+ E         LT DDRTKA K ++   +RI  ++     +V  +  +   +     
Sbjct: 156 HRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLK 215

Query: 185 DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDE 364
                SK +D             ++   G+KWLKD  L KRSD + R++++GDP ++L E
Sbjct: 216 SSKLYSKKTDV----------ETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWE 265

Query: 365 IGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGD 544
           IGI   LA  L VSE V+ +N   I    N  +        RRNG L     A+QL++GD
Sbjct: 266 IGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGD 325

Query: 545 LYERQITDGDLIIINRTPTL 604
           +  R + DGDLI+INR P++
Sbjct: 326 IAYRPLQDGDLILINRPPSV 345


>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
           [Setaria italica]
          Length = 1450

 Score =  106 bits (264), Expect = 6e-21
 Identities = 68/200 (34%), Positives = 100/200 (50%)
 Frame = +2

Query: 5   HRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN 184
           HR+ E         LT DDRTKA K ++   +RI  ++     +V  +  +   +     
Sbjct: 244 HRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLK 303

Query: 185 DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDE 364
                SK +D             ++   G+KWLKD  L KRSD + R++++GDP ++L E
Sbjct: 304 SSKLYSKKTDV----------ETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWE 353

Query: 365 IGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGD 544
           IGI   LA  L VSE V+ +N   I    N  +        RRNG L     A+QL++GD
Sbjct: 354 IGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGD 413

Query: 545 LYERQITDGDLIIINRTPTL 604
           +  R + DGDLI+INR P++
Sbjct: 414 IAYRPLQDGDLILINRPPSV 433


>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
           [Setaria italica] gi|514785102|ref|XP_004970757.1|
           PREDICTED: DNA-directed RNA polymerase D subunit 1-like
           isoform X4 [Setaria italica]
          Length = 1451

 Score =  106 bits (264), Expect = 6e-21
 Identities = 68/200 (34%), Positives = 100/200 (50%)
 Frame = +2

Query: 5   HRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN 184
           HR+ E         LT DDRTKA K ++   +RI  ++     +V  +  +   +     
Sbjct: 245 HRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLK 304

Query: 185 DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDE 364
                SK +D             ++   G+KWLKD  L KRSD + R++++GDP ++L E
Sbjct: 305 SSKLYSKKTDV----------ETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWE 354

Query: 365 IGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGD 544
           IGI   LA  L VSE V+ +N   I    N  +        RRNG L     A+QL++GD
Sbjct: 355 IGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGD 414

Query: 545 LYERQITDGDLIIINRTPTL 604
           +  R + DGDLI+INR P++
Sbjct: 415 IAYRPLQDGDLILINRPPSV 434


>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  106 bits (264), Expect = 6e-21
 Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
 Frame = +2

Query: 242 GESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNR 421
           G    S  SGL+W+KD  LGKRSD   R VV+GDPN++L EIGI  ++AERL +SE +NR
Sbjct: 271 GSHDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENLNR 330

Query: 422 FNRRKIREYNNHRI-TKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTP 598
           +N  K+    N R+  KG  H  RR G L       +L++GD   R ++DGD+++INR P
Sbjct: 331 WNIEKLDASCNLRLMVKGEMH-VRRKGSLVWVRQTDELQMGDTIYRPLSDGDIVLINRPP 389

Query: 599 TL 604
           ++
Sbjct: 390 SI 391


>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
           brachyantha]
          Length = 1492

 Score =  105 bits (262), Expect = 1e-20
 Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 3/203 (1%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E       G  L  DDRTKA K ++    RI  ++      V+ +  +       T
Sbjct: 273 HRVVEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVYASSAV-------T 325

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHS-GLKWLKDTALGKRSDFSLRAVVIGDPNLQL 358
           +   +C K S        + GES  S  + G KWLKD  L KRSD + R+V++GDP + L
Sbjct: 326 SRVMECLKSSKL--YSRKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSVMVGDPKINL 383

Query: 359 DEIGINRELAERLTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLK 535
           +EIG+  +LA  L VSE V+ +N   I  + N H +TK +    RRNG L     A++L+
Sbjct: 384 NEIGMPMDLALNLVVSEQVSSYNFETINLKCNLHLLTKEVL-LVRRNGRLIFIRKANKLE 442

Query: 536 IGDLYERQITDGDLIIINRTPTL 604
           IGD+  R + DGDLI++NR P++
Sbjct: 443 IGDIAYRPLQDGDLILVNRPPSV 465


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
           mays]
          Length = 1444

 Score =  102 bits (255), Expect = 6e-20
 Identities = 68/200 (34%), Positives = 100/200 (50%)
 Frame = +2

Query: 5   HRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN 184
           HR+ E         LT DDRTKA K ++    RI  ++     +V  +  +   +     
Sbjct: 245 HRVVEIGYGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLK 304

Query: 185 DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDE 364
                SK +D         GE+    + G+KWLKD  L KRSD   R++++GDP ++L E
Sbjct: 305 SSKLYSKKAD---------GETSTDTY-GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWE 354

Query: 365 IGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGD 544
           IGI  +L+  L VSE V+ +N +      N  +        RRNG L     A QL+IGD
Sbjct: 355 IGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGD 414

Query: 545 LYERQITDGDLIIINRTPTL 604
           +  R + DGD+I+INR P++
Sbjct: 415 IAYRPLQDGDIILINRPPSV 434


>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
           mays]
          Length = 871

 Score =  102 bits (255), Expect = 6e-20
 Identities = 68/200 (34%), Positives = 100/200 (50%)
 Frame = +2

Query: 5   HRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN 184
           HR+ E         LT DDRTKA K ++    RI  ++     +V  +  +   +     
Sbjct: 245 HRVVEIGYGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLK 304

Query: 185 DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDE 364
                SK +D         GE+    + G+KWLKD  L KRSD   R++++GDP ++L E
Sbjct: 305 SSKLYSKKAD---------GETSTDTY-GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWE 354

Query: 365 IGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGD 544
           IGI  +L+  L VSE V+ +N +      N  +        RRNG L     A QL+IGD
Sbjct: 355 IGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGD 414

Query: 545 LYERQITDGDLIIINRTPTL 604
           +  R + DGD+I+INR P++
Sbjct: 415 IAYRPLQDGDIILINRPPSV 434


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
           gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
           D largest subunit [Zea mays]
           gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent
           RNA polymerase D largest subunit family protein [Zea
           mays] gi|414869426|tpg|DAA47983.1| TPA: putative DNA
           dependent RNA polymerase D largest subunit family
           protein [Zea mays]
          Length = 1444

 Score =  102 bits (255), Expect = 6e-20
 Identities = 68/200 (34%), Positives = 100/200 (50%)
 Frame = +2

Query: 5   HRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN 184
           HR+ E         LT DDRTKA K ++    RI  ++     +V  +  +   +     
Sbjct: 245 HRVVEIGYGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLK 304

Query: 185 DYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDE 364
                SK +D         GE+    + G+KWLKD  L KRSD   R++++GDP ++L E
Sbjct: 305 SSKLYSKKAD---------GETSTDTY-GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWE 354

Query: 365 IGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGD 544
           IGI  +L+  L VSE V+ +N +      N  +        RRNG L     A QL+IGD
Sbjct: 355 IGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGD 414

Query: 545 LYERQITDGDLIIINRTPTL 604
           +  R + DGD+I+INR P++
Sbjct: 415 IAYRPLQDGDIILINRPPSV 434


>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like
           [Brachypodium distachyon]
          Length = 1470

 Score =  101 bits (252), Expect = 1e-19
 Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 3/203 (1%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E    F  G  L  DDRTKA K  +   ++I  ++     +V  +  +   +    
Sbjct: 245 HRVAEMPYRFSDGPSLAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLASSFVTSRVMECL 304

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHS-GLKWLKDTALGKRSDFSLRAVVIGDPNLQL 358
                 SK +D       ++G S   + S G KWLKD  L KRSD++ R++++GDP ++L
Sbjct: 305 QSSKLYSKKTDK-ESSTDSYGTSVKKNDSYGTKWLKDAILSKRSDYAFRSIMVGDPKIRL 363

Query: 359 DEIGINRELAERLTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLK 535
            EIGI  +LA+ L V E V+ +N + I  + N H + K L    RRNG L      +QL+
Sbjct: 364 HEIGIPMDLAD-LFVPEHVSIYNFKSINLKCNLHLLAKELL-IARRNGKLIYVRKENQLE 421

Query: 536 IGDLYERQITDGDLIIINRTPTL 604
           IGD+  R + DGDLI++NR P++
Sbjct: 422 IGDIVYRPLQDGDLILVNRPPSV 444


>ref|XP_006857929.1| hypothetical protein AMTR_s00069p00150990 [Amborella trichopoda]
           gi|548862031|gb|ERN19396.1| hypothetical protein
           AMTR_s00069p00150990 [Amborella trichopoda]
          Length = 966

 Score =  101 bits (251), Expect = 2e-19
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 1/201 (0%)
 Frame = +2

Query: 5   HRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLT 181
           HR+ E    F  G  + PD+RT ALK L+    ++                +V + G L 
Sbjct: 318 HRVMESKNLFTDGPHIMPDNRTMALKKLISASNQLLFMG-----------NLVTTRGNLV 366

Query: 182 NDYFQCSKLSDTCPIENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLD 361
            DYF+ SK       + V +G S +S     KW KDT LGKR++++ R  V+GDP ++L 
Sbjct: 367 LDYFKESKFGGKKLWKAVANGGSSSS-----KWFKDTVLGKRTNYAFRMTVVGDPKIKLG 421

Query: 362 EIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIG 541
           EIG  R+++E L + + VN FN + +       + +      RR G L        L++G
Sbjct: 422 EIGFPRDISENLMIPQHVNLFNLKMLTSCAYSILQQKTVFYVRRKGDLVPVKHPYDLEVG 481

Query: 542 DLYERQITDGDLIIINRTPTL 604
           D+  R + DGDL++INR P++
Sbjct: 482 DVIYRNLRDGDLLMINRPPSV 502